Citrus Sinensis ID: 013821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MLLRSSSTPVNIGSLVSPSLSDSPNKDVEEDTNRLNSTTLSCSSPPTSQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAPSFEIYSSVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEEEGEYEEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHccHHHHccHHHHHHHHcHHHHHcccccccHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHccccccccHHHHHcccccccccccccccccccccccccccEEEEcccccccccccEEEEEEccccccccccccccccHcccccccccHccccHHHccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHccc
Coil and Loop (DISEMBL)
mllrssstpvnigslvspslsdspnkdveedtnrlnsttlscsspptsqencssslkglrrassdgnlkglahshsscdiEDQIRYLCAQkkssclhnkanktmlrsapsfeiyssvegveseevSLTRTVTigedldgsgissgdfsfgskknmglieeegeyeeeglngigeeierpvsppmylamglgisvpgfddagevvdlimpnfddsAEAEEYYKRMideypchplLLRNYAQLLQKKGdlyraedyynhatmadpgdgesWMQYAKLVWELHRDQHRALTYFERaalaapqdsnILAAYACFLWemeddgeddkaQEEHIqvlpiqskgdlegAEEYFSRAilanpgdgeiMSQYAKLVWELHHDHDKALCYFeravqaspadsHVLAAYACFLweteededdskssdqfqqvapirqGAVTTANVYA
Flexible Loop (DISEMBL)
mllrssstpvnigslvspslsdspnkDVEEDTNRLnsttlscsspptsqeNCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAPSFEiyssvegveseeVSLTRTVtigedldgsgissgdfsfgsKKNMGLIEEEGEYEEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAalaapqdsNILAAYACFLWEMEDDGEDDKAQEEHIQVlpiqskgdlEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDqfqqvapirqgaVTTANVYA
Low Complexity Region (SEG)
MLLRSSSTPVNIGSLVSPSLSDSPNKDVEEDTNRLNsttlscsspptsQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAPSFEIYssvegveseevsLTRTVTigedldgsgissgdfsfgsKKNMglieeegeyeeeglngigeeieRPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWeteededdskssdQFQQVAPIRQGAVTTANVYA
Disordered region (IsUnstruct)
*****************************************************************************CDIEDQIRYLCAQKKSSCLH***************IY****************VT*************************************************PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM**************************GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE********************************
Disordered Region (DISOPRED)
**LRSSSTPVNI*******************************************************************************************************************TRTVTIGED*************************GEYEEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA
Disordered Region (DISEMBL)
**********NIGSLVS*******************************************RASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAPSFEIYSS**********LTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEEEGEYEEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET**************QVAPIRQGAVTTANVYA
Disordered Region (DISPRO)
**********************************************************LRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAPSFEIYSSVEGVESEEVSLTRTVTIGED****************************EEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTT**V**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSSSTPVNIGSLVSPSLSDSPNKDVEEDTNRLNSTTLSCSSPPTSQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAPSFEIYSSVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEEEGEYEEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
Q54NS3	263	TPR repeat-containing pro	yes	no	0.373	0.619	0.225	6e-06

>sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095 OS=Dictyostelium discoideum GN=DDB_G0285095 PE=4 SV=1

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 28/191 (14%)

Query: 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284
           + E P    LL  Y  LL  +G    AE+    A   D  +  +W  Y + +   +  + 
Sbjct: 80  LQEQPQDSDLLAQYGVLLSMEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNNPKK 139

Query: 285 RALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD 338
               Y E    AAP+      DS++L +YA F                      IQ  G+
Sbjct: 140 AKEVYGEAYKHAAPKIALDEDDSSLLLSYAIF----------------------IQKSGE 177

Query: 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
           ++ AE+ + R + +     E + +Y   + E+  D +K   Y + A    P        Y
Sbjct: 178 IDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRY 237

Query: 399 ACFLWETEEDE 409
           + +L   ++DE
Sbjct: 238 SNYLKTYKKDE 248

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
255574883	502	o-linked n-acetylglucosamine transferase	0.972	0.844	0.488	1e-107
359477777	492	PREDICTED: uncharacterized protein LOC10	0.972	0.861	0.472	1e-101
296083733	531	unnamed protein product [Vitis vinifera]	0.972	0.798	0.404	5e-81
147859668	521	hypothetical protein VITISV_026571 [Viti	0.871	0.729	0.417	7e-76
357440919	376	TPR domain protein [Medicago truncatula]	0.660	0.765	0.428	5e-70
356533818	368	PREDICTED: uncharacterized protein LOC10	0.681	0.807	0.430	5e-65
449432498	367	PREDICTED: uncharacterized protein LOC10	0.715	0.850	0.427	9e-63
356576440	285	PREDICTED: uncharacterized protein LOC10	0.516	0.789	0.456	7e-60
297848682	308	hypothetical protein ARALYDRAFT_470433 [	0.658	0.931	0.443	8e-58
21555875	310	unknown [Arabidopsis thaliana]	0.676	0.951	0.451	1e-57

>gi|255574883|ref|XP_002528348.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223532216|gb|EEF34020.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 248/508 (48%), Positives = 311/508 (61%), Gaps = 84/508 (16%)

Query: 1   MLLRSSSTPVNIGSLVSP-SLSDSPNKDVEEDT--------NRLNSTTLSC--SSPPTSQ 49
           M+LRSSS PV  G+ +SP S SDSPN+D  +          + LN T +SC  SS P S+
Sbjct: 1   MILRSSSNPV-TGTFLSPFSSSDSPNRDFHDHNKLSSSHGFHHLNLTPISCTNSSSPISE 59

Query: 50  ENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAP 109
            N S  L G RRA SD NL+   +  SS D +++++   +         +   TML++AP
Sbjct: 60  HNDSFRLGGFRRAWSDSNLEKFVYPSSSSDHKEELQNFTSHTPKR-FTKRNYTTMLQTAP 118

Query: 110 SFEIYS---------SVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEE 160
           SF I++            GVE EE  L RTVTIG+ ++G+  S+G+ SF  KK+MGLIEE
Sbjct: 119 SFSIFNVNDHELQDQEKNGVEEEERGLMRTVTIGDIIEGT--SNGELSF-EKKSMGLIEE 175

Query: 161 EGEY--------EEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDL---IMP 209
           EGE         E E LN   E ++ PVSPPMYLA GLGI    F   G         +P
Sbjct: 176 EGEEEQDQEVMNEIENLNL--ENVKEPVSPPMYLASGLGIDGIDFGGGGRGGGGFDSTLP 233

Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
           NFD+S + EEYYKRM+DE+PCHPL L NYAQLLQ KGDL+ AE+YY  AT+ADP DGE  
Sbjct: 234 NFDESDDLEEYYKRMVDEFPCHPLFLANYAQLLQSKGDLHGAEEYYYRATVADPEDGEIL 293

Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
           M+YAKL W+LH DQ RA + FERA  AAPQDS++LAAYA FLWE++ DGE+D+ Q +HIQ
Sbjct: 294 MKYAKLEWQLHHDQDRAWSNFERAIQAAPQDSHVLAAYASFLWEIDGDGEEDRWQTKHIQ 353

Query: 330 VLP---------------------------------------------IQSKGDLEGAEE 344
           + P                                              Q+KGD+ GAEE
Sbjct: 354 LPPGLIMDVDDDAASATNKGFAVEEYYKKMVEENPSNSLVLRNYAQFLYQAKGDIRGAEE 413

Query: 345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404
           Y+SRA+LA+PGDGEI SQYAKLVWEL  D DKA  YFE+AVQA+P +S+VLAAYA FLWE
Sbjct: 414 YYSRALLADPGDGEIKSQYAKLVWELGRDRDKASSYFEQAVQAAPGNSNVLAAYASFLWE 473

Query: 405 TEEDEDDSKSSDQFQQVAPIRQGAVTTA 432
           TEE+E+DS  SDQFQ+V    + +VT A
Sbjct: 474 TEENEEDSTCSDQFQEVIH-HESSVTAA 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477777|ref|XP_002282135.2| PREDICTED: uncharacterized protein LOC100261301 [Vitis vinifera]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/500 (47%), Positives = 304/500 (60%), Gaps = 76/500 (15%)

Query: 1   MLLRSSSTPVNIGSLVSPSLS------------DSPNKDVEEDTNRLNSTTLSCSSPPT- 47
           MLLRSSSTPV   +L+SP               +   K     +  L+    SC+S P  
Sbjct: 1   MLLRSSSTPVLGTTLLSPFSESPSRDSESSSHGNPTTKITFSHSGHLSFPLFSCNSSPLP 60

Query: 48  ----SQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKT 103
                + N S + KG RR+ S+GNL+GL HS  S D+E+  R       S    +K +K 
Sbjct: 61  HSFDQEPNSSINPKGFRRSRSEGNLEGLGHS--SFDLEEFRR--SESNTSKKYFDKTHKA 116

Query: 104 MLRSAPSFEIYSSVEGV-----------ESEEVSLTRTVTIGEDLDGSGISSGDFSFGSK 152
           ML + PSF IY+  +GV           E E   L RT+TI E + G+  +S +FSFG +
Sbjct: 117 MLETTPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTITIEESIRGT--TSREFSFG-R 173

Query: 153 KNMGLIEEEGEYEE-EGLNGIG-EEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPN 210
           K MGLIEEE E E+  G   +G E+   PVSP MYLA GLG+        G  VD    +
Sbjct: 174 KTMGLIEEEEEEEDVNGFQKLGVEDGVEPVSPLMYLATGLGMDGA--GFGGGRVDFAAAD 231

Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
           FD+S + EEYY+RM++E PC+PL LRNYAQLLQ KGDL RAE+YY+ AT+ADP DGE  M
Sbjct: 232 FDESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGEILM 291

Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
           QYAKL+W++HRDQ RAL+YFERAA  A  DS++LAA A FLW++ED+GEDD A++  ++V
Sbjct: 292 QYAKLIWDVHRDQARALSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGLVEV 351

Query: 331 L---------------------------PI----------QSKGDLEGAEEYFSRAILAN 353
           L                           P+          Q+KG+L+ AEEY+SRAILA+
Sbjct: 352 LFQDSINASEISKVEEHYKKMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILAD 411

Query: 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK 413
           PGDGEIMSQYAKL WELHHD DKAL YF++AVQA+P DSHVLAAYA FLWET+E+E+++ 
Sbjct: 412 PGDGEIMSQYAKLAWELHHDRDKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENN 471

Query: 414 SSDQFQQVAPIRQGAVTTAN 433
           +S Q      +   A T+AN
Sbjct: 472 ASMQDHIQVSLFHEAATSAN 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083733|emb|CBI23722.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 218/539 (40%), Positives = 287/539 (53%), Gaps = 115/539 (21%)

Query: 1   MLLRSSSTPVNIGSLVSPSL------------SDSPNKDVEEDTNRLNSTTLSCSSPPT- 47
           MLLRSSSTPV   +L+SP               +   K     +  L+    SC+S P  
Sbjct: 1   MLLRSSSTPVLGTTLLSPFSESPSRDSESSSHGNPTTKITFSHSGHLSFPLFSCNSSPLP 60

Query: 48  ----SQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKT 103
                + N S + KG RR+ S+GNL+GL HS  S D+E+  R       S    +K +K 
Sbjct: 61  HSFDQEPNSSINPKGFRRSRSEGNLEGLGHS--SFDLEEFRR--SESNTSKKYFDKTHKA 116

Query: 104 MLRSAPSFEIYSSVEGV-----------ESEEVSLTRTVTIGEDLDGSGISSGDFSFGSK 152
           ML + PSF IY+  +GV           E E   L RT+TI E + G+  +S +FSFG +
Sbjct: 117 MLETTPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTITIEESIRGT--TSREFSFG-R 173

Query: 153 KNMGLIEEEGEYEE-EGLNGIG-EEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPN 210
           K MGLIEEE E E+  G   +G E+   PVSP MYLA GLG+        G  VD    +
Sbjct: 174 KTMGLIEEEEEEEDVNGFQKLGVEDGVEPVSPLMYLATGLGMDGA--GFGGGRVDFAAAD 231

Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
           FD+S + EEYY+RM++E PC+PL LRNYAQLLQ KGDL RAE+YY+ AT+ADP DGE  M
Sbjct: 232 FDESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGEILM 291

Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ------ 324
           QYAKL+W++HRDQ RAL+YFERAA  A  DS++LAA A FLW++ED+GEDD A+      
Sbjct: 292 QYAKLIWDVHRDQARALSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGLVEE 351

Query: 325 ---EEH----------------------IQVLPIQSKG----------DLEGAEEYFSRA 349
              E H                      I V    S G          ++   EE++ + 
Sbjct: 352 GLSEFHNLDQEDENKPASPSLHPAAGLGIDVAACGSVGCVDFSSINASEISKVEEHYKKM 411

Query: 350 ILANPGDGEIMSQYAKLV-----------------------------------WELHHDH 374
           +  NP +   +  YA+ +                                   WELHHD 
Sbjct: 412 VEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWELHHDR 471

Query: 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTAN 433
           DKAL YF++AVQA+P DSHVLAAYA FLWET+E+E+++ +S Q      +   A T+AN
Sbjct: 472 DKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENNASMQDHIQVSLFHEAATSAN 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859668|emb|CAN83109.1| hypothetical protein VITISV_026571 [Vitis vinifera]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 201/482 (41%), Positives = 262/482 (54%), Gaps = 102/482 (21%)

Query: 41  SCSSPPTSQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKA 100
           SC   P    N S + KG RR+ S+GNL+GL HS  S D+E+  R       S    +K 
Sbjct: 52  SCFMEP----NSSINPKGFRRSRSEGNLEGLGHS--SFDLEEFRR--SESNTSKKYFDKT 103

Query: 101 NKTMLRSAPSFEIYSSVEGV-----------ESEEVSLTRTVTIGEDLDGSGISSGDFSF 149
           +K ML + PSF IY+  +GV           E E   L RT TI E + G+  +S +FSF
Sbjct: 104 HKAMLETTPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTTTIEESIRGT--TSREFSF 161

Query: 150 GSKKNMGLIEEEGEYEE-EGLNGIG-EEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLI 207
           G +K MGLIEEE E E+  G   +G E+   PVSP MYLA GLG+        G  VD  
Sbjct: 162 G-RKTMGLIEEEEEEEDVNGFQKLGVEDGVEPVSPLMYLATGLGMDGA--GFGGGRVDFA 218

Query: 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267
             +FD+S + EEYY+RM++E PC+PL LRNYAQLLQ KGDL RAE+YY+ AT+ADP DGE
Sbjct: 219 AADFDESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGE 278

Query: 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ--- 324
             MQYAKL+W++HRDQ R L+YFERAA  A  DS++LAA A FLW++ED+GEDD A+   
Sbjct: 279 ILMQYAKLIWDVHRDQARTLSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGL 338

Query: 325 ------EEH----------------------IQVLPIQSKG----------DLEGAEEYF 346
                 E H                      I V    S G          ++   EE++
Sbjct: 339 VEEGLSEFHNLDQEDENKPASPSLHPAAGLGIDVAACGSVGCVDFSSINASEISKVEEHY 398

Query: 347 SRAILANPGDGEIMSQYAKLV-----------------------------------WELH 371
            + +  NP +   +  YA+ +                                   WELH
Sbjct: 399 KKMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWELH 458

Query: 372 HDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTT 431
           HD DKAL YF++AVQA+P DSHVLAAYA FLWET+E+E+++ +S Q      +   A T+
Sbjct: 459 HDRDKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENNASMQDHIQVSLFHEAATS 518

Query: 432 AN 433
           AN
Sbjct: 519 AN 520

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440919|ref|XP_003590737.1| TPR domain protein [Medicago truncatula] gi|355479785|gb|AES60988.1| TPR domain protein [Medicago truncatula] gi|388501702|gb|AFK38917.1| unknown [Medicago truncatula]

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 160/373 (42%), Positives = 212/373 (56%), Gaps = 85/373 (22%)

Query: 105 LRSAPSFEIYSSVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEEEGEY 164
           LRS+PSFEIY++ +     E  L RTV   E      I + DF+F   K M LI+EE + 
Sbjct: 20  LRSSPSFEIYNNNDP----EQVLKRTVMSLE-----SIGTSDFTFERSK-MDLIQEEEDN 69

Query: 165 EEEGLN-----GIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVV---------DLIMPN 210
           E +        G+ +++ +P +PPM+LA GLG+      D G+VV         D+ +PN
Sbjct: 70  ENDWSTEIQNLGVVDDV-QPSTPPMFLATGLGV------DGGDVVSDNNFIISDDMFVPN 122

Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
             +S   +EYYK M+ +YP HPL+L+ YA  LQ KG+L  AE+Y++ AT+ADP DGE  M
Sbjct: 123 LQESENLQEYYKIMVHDYPSHPLILKKYAHFLQGKGELQDAEEYFHRATLADPNDGEILM 182

Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD---GEDDKAQE-- 325
            YAKLVWE H D+ RA  YFERAA A+PQDS++LAAYA FLWE EDD    E+   Q   
Sbjct: 183 HYAKLVWENHHDRDRASVYFERAAKASPQDSDVLAAYASFLWETEDDENESENHTTQNDM 242

Query: 326 EHIQVLPIQSKGDLEG-------------------------------------------- 341
           E  +  PI +  +  G                                            
Sbjct: 243 EKQETKPINTANEENGAEKLATANYSEDSNDADYLKKMINENPNNPLFLKKYAQFLFQSN 302

Query: 342 -----AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA 396
                AE+Y+SRAI A+P DGE +S+YAKL W+LHHD +KAL  FE+AV+A+P DS+VLA
Sbjct: 303 RDLEAAEDYYSRAISADPSDGETISEYAKLQWQLHHDQEKALSLFEQAVKATPGDSNVLA 362

Query: 397 AYACFLWETEEDE 409
           AY CFLWETE++E
Sbjct: 363 AYTCFLWETEDEE 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533818|ref|XP_003535455.1| PREDICTED: uncharacterized protein LOC100805375 [Glycine max]

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/365 (43%), Positives = 202/365 (55%), Gaps = 68/365 (18%)

Query: 93  SSCLHNKANKTMLRSAPSFEIYSSVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSK 152
           +S + ++   T L SAPSF IY+++ G +    +      IG+ L+ +G  SG+FSFGS 
Sbjct: 6   NSVMEDEFESTTLHSAPSFAIYNNLHGDDEITPAEVFKRAIGKSLEATG--SGEFSFGSN 63

Query: 153 KNMGLIEEEGEYEEEGLNGIG-----EEIERPVSPPMYLAMGLGISVP-GFDDAGEVVDL 206
           K M LIEEE     +   GI      EE  +P SPPMYLA GLG+    GFD      D+
Sbjct: 64  K-MDLIEEEENENNDWSTGIQNLSIEEEDVQPASPPMYLAAGLGVDGDVGFDKFISD-DV 121

Query: 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266
             P+ ++S +   YYKRM DEYPCHPL+L+ YA LLQ  GDL  AE+Y+  ATMADP +G
Sbjct: 122 FNPSLEESEDLVGYYKRMADEYPCHPLVLKKYALLLQSNGDLRGAEEYFLRATMADPNEG 181

Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE- 325
           E  MQYAKLVWE H D+ RA+ YFERA  AAPQDSN+LAAY  FLW +EDD  +D   E 
Sbjct: 182 EILMQYAKLVWENHHDKDRAMVYFERAVQAAPQDSNVLAAYTTFLWNIEDDENEDGKHEI 241

Query: 326 ----EHIQVLPIQSKGDLEGAE-------------------------------------- 343
               E  +  P++   D  G E                                      
Sbjct: 242 QSEMETQKAEPVKPSKDESGQEIDGAHTTTANCGEENNVEDYFKKMLDENPNNPLFLKKY 301

Query: 344 ---------------EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
                          +Y+SRAI+A+P DGE++S+YAKLVWELHHD +KA   FE+AVQA+
Sbjct: 302 AQFLLQSKRDLQVAEDYYSRAIVADPSDGEMISEYAKLVWELHHDQEKASFLFEQAVQAT 361

Query: 389 PADSH 393
           P D +
Sbjct: 362 PGDRY 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432498|ref|XP_004134036.1| PREDICTED: uncharacterized protein LOC101202732 [Cucumis sativus] gi|449487480|ref|XP_004157647.1| PREDICTED: uncharacterized LOC101202732 [Cucumis sativus]

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 165/386 (42%), Positives = 213/386 (55%), Gaps = 74/386 (19%)

Query: 104 MLRSAPSFEIYS------SVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGL 157
           ML S  SF IY+       + G+E+ E  +   V   E L  +G    DFSF S++ MGL
Sbjct: 1   MLHSTASFSIYTDDENQEQIMGLEAFEKGVMIEVNKEEVLGSTG---HDFSF-SERAMGL 56

Query: 158 IEEEGEYEEEGLNGIGEEIE---RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDS 214
           I+EE   +E+GLN   ++ E   RP SPP+YLA GLG+   G     + VD     FD+ 
Sbjct: 57  IQEEEMEDEDGLNRGFDDSEVNLRPASPPLYLAAGLGMDASGLGGGYDSVDF----FDE- 111

Query: 215 AEAEEYYKRMIDEYP-CHPLL-LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
                   +M+DE P  HP L LR+Y Q L  +G L  AE+    AT+  P DGE+ M Y
Sbjct: 112 --------KMVDETPSIHPSLSLRDYVQSLWSEGKLDEAEEQCYQATITFPEDGETLMLY 163

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE------------D 320
           A+LVWELH DQ +A +YFERAAL AP +SNILAA A FLWE+ ++ E            D
Sbjct: 164 AQLVWELHHDQAKASSYFERAALVAPNNSNILAARAKFLWELNEEDETMIPGEEDSNPVD 223

Query: 321 DKAQEEHIQVLP--------------------------------IQSKGDLEGAEEYFSR 348
             + EE I+  P                                 QSK DL+GAEEY+ R
Sbjct: 224 SSSPEERIEPAPDTGESDMQEYYEKMLKENPTDPLLLKNYARFLQQSKVDLQGAEEYYYR 283

Query: 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408
            I A+P DGE++S+YAKLVWELHHD++KAL  FERAV+ SP +S+VL AYA FLWET+E 
Sbjct: 284 GIQADPSDGELLSEYAKLVWELHHDYNKALNNFERAVETSPTNSYVLGAYASFLWETDEH 343

Query: 409 EDDSKSSDQFQQVAPIRQGAVTTANV 434
           E+D  S +  Q   P    AV+  N 
Sbjct: 344 EEDGASKNDSQW--PSNTVAVSVGNA 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576440|ref|XP_003556339.1| PREDICTED: uncharacterized protein LOC100783167 [Glycine max]

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/285 (45%), Positives = 168/285 (58%), Gaps = 60/285 (21%)

Query: 184 MYLAMGLGISVP-GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242
           MYLA GLG+    GFD      D+  P+ ++S + E YYKRM+DEYPCHPL+L+ YAQLL
Sbjct: 1   MYLAAGLGVDADVGFDKFISD-DVFNPSLEESEDLEGYYKRMVDEYPCHPLVLKKYAQLL 59

Query: 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN 302
           Q  GDL  A++Y+  AT+ADP DGE  MQYAKLVWE H D+ RA+ YFERA  AAPQDSN
Sbjct: 60  QSNGDLQGAQEYFLQATVADPNDGEILMQYAKLVWENHHDKDRAMVYFERAVQAAPQDSN 119

Query: 303 ILAAYACFLWEMEDDGEDDK------------------AQEEHIQVL-----PIQSKGDL 339
           +LAAY  FLW +EDD  +D+                  ++EE  QV+        + G+ 
Sbjct: 120 VLAAYTSFLWNIEDDENEDRKHEIQSDMEIQKTEPVKPSKEESGQVIDAANVTTANFGEE 179

Query: 340 EGAEEYFSR-----------------------------------AILANPGDGEIMSQYA 364
              E+Y  +                                   A++A+P DGE++S+YA
Sbjct: 180 SNVEDYLKKMVDENPSNPLFLKKYAQFLLQSKRDLQAAEDYYSRAVVADPSDGEMISEYA 239

Query: 365 KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409
            LVWELHHD +KA   FE+AVQA+P DS+VLAAY CFLWET++ E
Sbjct: 240 NLVWELHHDQEKASFLFEQAVQATPGDSNVLAAYTCFLWETDDAE 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848682|ref|XP_002892222.1| hypothetical protein ARALYDRAFT_470433 [Arabidopsis lyrata subsp. lyrata] gi|297338064|gb|EFH68481.1| hypothetical protein ARALYDRAFT_470433 [Arabidopsis lyrata subsp. lyrata]

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 144/325 (44%), Positives = 192/325 (59%), Gaps = 38/325 (11%)

Query: 104 MLRSAPSFEIY-SSVEGVESE------EVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMG 156
           ML+S  S   Y  S +G +SE      E +L RTVTIG+ +DG G     FSF   K   
Sbjct: 1   MLKSEASLSSYCDSGDGFKSEDPLTGIEENLERTVTIGDSIDGGG-----FSFAKHKEED 55

Query: 157 LIEEEGEYEEEGLN--GIGE------EIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIM 208
             E E    EE +   GIG+      EIERP SPPM+LA GLGI    FD  G      +
Sbjct: 56  SSEGERGVLEEVIKKLGIGKRDEQGFEIERPPSPPMHLAAGLGIDK--FDLYGNETKFDL 113

Query: 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268
           P FDD     +YYK M++EYP HPLLL+NYA+ L+ KGDL  AE+YY+  T+ +P DG +
Sbjct: 114 PGFDDE-NCGDYYKGMLEEYPLHPLLLKNYAKFLEYKGDLTGAEEYYHKCTVVEPCDGVA 172

Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328
              Y +LV +LH+D+ +A++YFERA  A+P+DSN+L AYA FLWE+          ++  
Sbjct: 173 LANYGRLVMKLHQDEAKAMSYFERAVQASPEDSNVLGAYASFLWEI-------NVDDDDE 225

Query: 329 QVLPIQSKGDLEGAEEYFSRAI------LANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
                +S G  +G EE+   A+      L+   DGE + +YAK  W +++DH+KAL YFE
Sbjct: 226 DDDDDESSG--KGKEEFEPDAVEKSNSSLSKTEDGETLCRYAKAFWSINNDHEKALFYFE 283

Query: 383 RAVQASPADSHVLAAYACFLWETEE 407
           +AV+ASP DS +L  YA FLWE EE
Sbjct: 284 KAVEASPNDSIILGEYARFLWEIEE 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555875|gb|AAM63952.1| unknown [Arabidopsis thaliana]

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 198/319 (62%), Gaps = 24/319 (7%)

Query: 104 MLRSAPSFEIY-SSVEGVESE------EVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMG 156
           ML+S  S  IY  S +G +SE      E +L RTVTIG+ +DG     G+FSF   K   
Sbjct: 1   MLKSEASLSIYCDSGDGFKSEDPVTGIEENLERTVTIGDAIDG-----GEFSFAKHKEED 55

Query: 157 LIE-EEGEYEEE----GL---NGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIM 208
             E E G +EE     G+   + +G EIERP SPPM+LA GLGI    FD  G  +   +
Sbjct: 56  SGEGERGVFEEVIKKLGIGVRDELGFEIERPPSPPMHLAAGLGIDK--FDLYGSEIKFDL 113

Query: 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268
           P +DD     +YYK M++EYP HPLLL+NYA+ L+ KGDL  AE+YY+  T+ +P DG +
Sbjct: 114 PGYDDK-NCGDYYKGMLEEYPLHPLLLKNYAKFLEYKGDLSGAEEYYHKCTVVEPSDGVA 172

Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328
              Y +LV +LH+D+ +A++YFERA  A+P DS +LAAYA FLWE+ +  +DD+  +E  
Sbjct: 173 LANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEI-NADDDDEDDDEDD 231

Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
                Q K + E      S++ L+   DGE + +YAK  W +++DH+KAL YFE+AV+AS
Sbjct: 232 DESSGQGKDEFEADAAGKSKSSLSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEAS 291

Query: 389 PADSHVLAAYACFLWETEE 407
           P DS +L  YA FLWE +E
Sbjct: 292 PNDSIILGEYARFLWEIDE 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.504	0.709	0.473	1.3e-52
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.277	0.417	0.384	8.2e-26
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.266	0.423	0.418	8.7e-24
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.240	0.441	0.420	8.9e-23
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.25	0.357	0.390	1e-20
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.259	0.210	0.355	8.5e-09
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.238	0.188	0.392	1.2e-07
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.240	0.203	0.330	3.8e-05
UNIPROTKB|Q71ZG0	222	LMOf2365_1529 "TPR domain prot	0.408	0.801	0.271	0.00097

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 108/228 (47%), Positives = 149/228 (65%)

Query:   178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN 237
             RP SPPM+LA GLGI    FD  G  +   +P +DD     +YYK M++EYP HPLLL+N
Sbjct:    85 RPPSPPMHLAAGLGIDK--FDLYGSEIKFDLPGYDDK-NCGDYYKGMLEEYPLHPLLLKN 141

Query:   238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA 297
             YA+ L+ KGDL  AE+YY+  T+ +P DG +   Y +LV +LH+D+ +A++YFERA  A+
Sbjct:   142 YAKFLEYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMKLHQDEAKAMSYFERAVQAS 201

Query:   298 PQDSNILAAYACFLWEM--EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355
             P DS +LAAYA FLWE+  +DD EDD   ++       Q K + E       ++ L+   
Sbjct:   202 PDDSIVLAAYASFLWEINADDDDEDDDEDDDESSG---QGKDEFEADAAGKGKSSLSKTE 258

Query:   356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW 403
             DGE + +YAK  W +++DH+KAL YFE+AV+ASP DS +L  YA FLW
Sbjct:   259 DGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLW 306

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 48/125 (38%), Positives = 79/125 (63%)

Query:   212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWM 270
             DD+ +   +Y++MI+  P + + L NYA+ L++ + D  +AE+Y   A +  P DG    
Sbjct:   153 DDNTDV--HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLA 210

Query:   271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
              YA+LVW++H+D  RA  YF +A  AAP+D  + A+YA FLW+ E++ E++K +E H + 
Sbjct:   211 MYAELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEEK-EERHEEE 269

Query:   331 LPIQS 335
             L  Q+
Sbjct:   270 LEHQT 274

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 49/117 (41%), Positives = 76/117 (64%)

Query:   211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESW 269
             ++D ++  +YY+ M+   P + LLL NY + L + + D   AE+YY  A + +PGDGE+ 
Sbjct:   144 YEDKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEAL 203

Query:   270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
               Y +L+WE  RD+ RA  YF++A  A+P D  +L +YA F+WE EDD +DD+ +EE
Sbjct:   204 SMYGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEE 260

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
 Identities = 45/107 (42%), Positives = 72/107 (67%)

Query:   220 YYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPG-DGESWMQYAKLVW 277
             YY+ MI  YP   LLL NYA+ L++ KGD  +AE+Y   A +++ G DGE    Y  L+W
Sbjct:   113 YYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIW 172

Query:   278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
             + H D  RA +Y+++A  ++P D N+LA+YA FLW+ E++ E+++++
Sbjct:   173 KNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEEESK 219

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
 Identities = 43/110 (39%), Positives = 70/110 (63%)

Query:   218 EEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
             + YY+ MID  P + LL  NYA+ L++ KGD+ +AE+Y   A + +  DG     YA L+
Sbjct:   166 DTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLI 225

Query:   277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
                H+D+ RA +Y+++A   +P+D  + A+YA FLW++++D ED+   EE
Sbjct:   226 LHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEE 275

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 42/118 (35%), Positives = 58/118 (49%)

Query:   216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAK 274
             + E  Y+  + + P +PLLL NYAQ L     D  RAE+Y+  A   +P D E++ +YA 
Sbjct:   419 KTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYAT 478

Query:   275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE----DDKAQEEHI 328
              +W    D   A   F  A  A P +S   A YA FLW    D      DD++ E+ I
Sbjct:   479 FLWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNTGGDDTCFPLDDESHEDTI 536

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 42/107 (39%), Positives = 53/107 (49%)

Query:   213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK-GDLYRAEDYYNHATMADPGDGESWMQ 271
             D  + E  Y+  + + P + LLL NYAQ L     D  RAE Y+  A  A+P D E+  +
Sbjct:   431 DYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNK 490

Query:   272 YAKLVWELHRDQHRAL-TYFERAALAAPQDSNILAAYACFLWEMEDD 317
             YA  +W    D  RA  TY E A  A P +S   A YA FLW    D
Sbjct:   491 YATFLWRARNDIWRAEETYLE-AISADPTNSVYSANYAHFLWNTGGD 536

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 35/106 (33%), Positives = 53/106 (50%)

Query:   208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDG 266
             + ++ +    E  YK  + + P + LLL NYAQ L     D  RAE+ +  A  ++  D 
Sbjct:   391 LDDYANYTRTELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDA 450

Query:   267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312
             E++ +YA  +W++  D   A   F  A  A P +S   A YA FLW
Sbjct:   451 ETYSKYAIFLWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLW 496

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|Q71ZG0 LMOf2365_1529 "TPR domain protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
 Identities = 54/199 (27%), Positives = 83/199 (41%)

Query:   216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
             EA + +  +I+E+P  P+   N+  +L    D  RAE ++  A   D     ++     L
Sbjct:    18 EAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRALELDDTVPAAYYSLGNL 77

Query:   276 VWELHRDQHRALTY-------------FERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322
              +EL R Q  A ++             F    ++  Q   +  A    L  +E + ED +
Sbjct:    78 YYELERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTLAMPYLLRSVELNPEDGE 137

Query:   323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY--AKLVWELHHDHDKALCY 380
             A  ++  VL     G  E A     R +L  P D + +     A L W+   D   A  Y
Sbjct:   138 ALFQYGIVLA--RSGFYEDAINMLERVLLVKPEDPDALYNIGAAYLAWQ--GDIVLAKNY 193

Query:   381 FERAVQASPADSHVLAAYA 399
             FERA+ A+ A SH LA  A
Sbjct:   194 FERAI-ATGA-SHELAENA 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      436       358   0.00081  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  260 KB (2137 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.37u 0.11s 28.48t   Elapsed:  00:00:01
  Total cpu time:  28.37u 0.11s 28.48t   Elapsed:  00:00:01
  Start:  Mon May 20 15:34:50 2013   End:  Mon May 20 15:34:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020351001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (533 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	436
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	4e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
             GD + A E + +A+  +P + E     A    +L  D+++AL   E+A++  P
Sbjct: 15  KLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHA- 258
           E    ++    + AEA E  +  ++  P      LL   A  L K G L  A +    A 
Sbjct: 27  EAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL 86

Query: 259 -TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD 317
                P   E+ +    L+  L      AL   E+A    P      A  A  L  + + 
Sbjct: 87  ELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPDLAEALLA--LGALYEL 143

Query: 318 GEDDKAQEEHIQVLPI------------------QSKGDLEGAEEYFSRAILANPGDGEI 359
           G+ ++A E + + L +                  ++ G  E A E   +A+  NP D   
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203

Query: 360 MSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419
                 L++     +++AL Y+E+A++  P ++  L   A  L E    E+  ++ ++  
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263

Query: 420 QVAP 423
           ++ P
Sbjct: 264 ELDP 267

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291
              L+N    L K GD   A + Y  A   DP + E++   A    +L +D   AL   E
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 292 RAALAAP 298
           +A    P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D  EA EYY++ ++  P +     N A    K G    A + Y  A   DP + +++   
Sbjct: 15  DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74

Query: 273 AKLVWELHRDQHRALTYFERA 293
               ++L + +  AL  +E+A
Sbjct: 75  GLAYYKLGKYE-EALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293
            L N   L  K GD   A +YY  A   DP + +++   A   ++L      AL  +E+A
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKA 60

Query: 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
               P ++          +++   G+ ++A E + + L +   
Sbjct: 61  LELDPDNAKAYYNLGLAYYKL---GKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)

Query: 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303
           ++GDL  A++  + A   DP D  +++  A L ++   +  +A   F RA    P + ++
Sbjct: 43  EQGDLEVAKENLDKALEHDPDDYLAYLALA-LYYQQLGELEKAEDSFRRALTLNPNNGDV 101

Query: 304 LAAYACFLWEMEDDGEDDKAQEEHIQVL-----PIQSK------------GDLEGAEEYF 346
           L  Y  FL +    G+ ++A ++  Q +     P  ++            GD + AE+Y 
Sbjct: 102 LNNYGTFLCQQ---GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158

Query: 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
           +RA+  +P   E + + A+L +      D A  Y ER  Q     
Sbjct: 159 TRALQIDPQRPESLLELAELYYLRGQYKD-ARAYLERYQQTYNQT 202

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 26/235 (11%)

Query: 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266
           I     D A+A E +++ +   P       N A++  ++G+   A   +      DP + 
Sbjct: 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533

Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---ILAAYACFLWEMEDDGEDDKA 323
            + +  A L +    ++  A+ + E+AA   PQ+      LA Y          G+  KA
Sbjct: 534 RAILALAGL-YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY------YLGKGQLKKA 586

Query: 324 -------------QEEHIQVL--PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368
                          E   +L     + GDL  A   F + +   P     +   A   +
Sbjct: 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD-AY 645

Query: 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423
            +  ++ KA+   +RA++  P ++      A  L   +  E   K +   Q+  P
Sbjct: 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
            + + EA E  K+ +   P  PLL  N AQ L K G    A    N     DP D   W 
Sbjct: 353 ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW- 411

Query: 271 QYAKLVWELHRDQHRA-LTYFERAALA-APQDSNILAAYA 308
                 +    ++  A L   E  ALA   + + I    A
Sbjct: 412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451

Length = 484

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
              GD + A EY+ +A+  +P + +     A         +++AL  +E+A++  P ++ 
Sbjct: 11  YKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEKALELDPDNAK 69

Query: 394 VLAAYACFLWETEEDED 410
                    ++  + E+
Sbjct: 70  AYYNLGLAYYKLGKYEE 86

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 20/53 (37%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265
           D  EA    +  +  YP     L    + L ++G L  A      A  ADP D
Sbjct: 12  DYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
           AL Y E+  L   ++ N+  A       +E D +D  A       L  Q  G+LE AE+ 
Sbjct: 38  ALGYLEQGDLEVAKE-NLDKA-------LEHDPDDYLAY--LALALYYQQLGELEKAEDS 87

Query: 346 FSRAILANPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAY 398
           F RA+  NP +G++++ Y      L     +++A+  FE+A+   P       + 
Sbjct: 88  FRRALTLNPNNGDVLNNYG---TFLCQQGKYEQAMQQFEQAI-EDPLYPQPARSL 138

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR-AEDYYNHATMADP 263
            EA E Y++ ++  P +     N A    K G  Y  A +    A   DP
Sbjct: 20  DEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 19/52 (36%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263
               EA E Y++ ++  P +     N      K G    A + Y  A   DP
Sbjct: 48  GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298
           A+   + GD   A      A    P   E+ +   + +    R    A      A  A P
Sbjct: 4   ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLA-EAAALLRAALAADP 62

Query: 299 QDS 301
            D 
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
           AL Y+E+A    P +++     A                            G  E A E 
Sbjct: 19  ALEYYEKALELDPDNADAYYNLAAAY----------------------YKLGKYEEALED 56

Query: 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
           + +A+  +P + +         ++L   +++AL  +E+A++  P
Sbjct: 57  YEKALELDPDNAKAYYNLGLAYYKLG-KYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 20/192 (10%)

Query: 223 RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA--KLVWELH 280
             +   P  P  L    +     GD  +A +Y   AT  DP +  +  Q    KL     
Sbjct: 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL---SQ 410

Query: 281 RDQHRALTYFERAALAAPQDSNI-LAAYACFLWEMEDD-----------GEDDKAQEEHI 328
            D   A+   E AA   P+     L     +L   + D            + D A   ++
Sbjct: 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL 470

Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH-DKALCYFERAVQA 387
                  KGDL  A E F +A+   P      +  A++  ++   + D A+  FE+ +  
Sbjct: 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI--DIQEGNPDDAIQRFEKVLTI 528

Query: 388 SPADSHVLAAYA 399
            P +   + A A
Sbjct: 529 DPKNLRAILALA 540

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.87
KOG1126	638	consensus DNA-binding cell division cycle control	99.87
PRK12370	553	invasion protein regulator; Provisional	99.86
PRK12370	553	invasion protein regulator; Provisional	99.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
PRK11189	296	lipoprotein NlpI; Provisional	99.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.85
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.85
KOG1125	579	consensus TPR repeat-containing protein [General f	99.84
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
KOG2076	895	consensus RNA polymerase III transcription factor	99.82
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.82
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.81
PLN02789	320	farnesyltranstransferase	99.8
KOG1129	478	consensus TPR repeat-containing protein [General f	99.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.78
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.76
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.76
KOG1125	579	consensus TPR repeat-containing protein [General f	99.76
PLN02789	320	farnesyltranstransferase	99.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.74
PRK11189	296	lipoprotein NlpI; Provisional	99.74
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.7
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.68
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.68
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.68
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.67
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.64
KOG1129	478	consensus TPR repeat-containing protein [General f	99.63
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.6
PRK14574	822	hmsH outer membrane protein; Provisional	99.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.59
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.59
KOG2076	895	consensus RNA polymerase III transcription factor	99.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.57
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.54
KOG2003	840	consensus TPR repeat-containing protein [General f	99.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.52
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.48
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.47
PLN03218	1060	maturation of RBCL 1; Provisional	99.46
PLN03218	1060	maturation of RBCL 1; Provisional	99.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.44
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.43
KOG0553	304	consensus TPR repeat-containing protein [General f	99.43
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.43
KOG0553	304	consensus TPR repeat-containing protein [General f	99.42
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.42
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.41
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.4
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.32
PLN03077	857	Protein ECB2; Provisional	99.31
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.31
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.3
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.29
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.27
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.27
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.25
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.22
PLN03077	857	Protein ECB2; Provisional	99.2
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.19
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.18
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.17
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.15
PRK11906	458	transcriptional regulator; Provisional	99.15
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.15
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
PRK04841	903	transcriptional regulator MalT; Provisional	99.13
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.11
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.11
PRK11906	458	transcriptional regulator; Provisional	99.1
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.08
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.06
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.0
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.98
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.96
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.95
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.92
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.88
PRK15331	165	chaperone protein SicA; Provisional	98.87
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.87
PRK04841	903	transcriptional regulator MalT; Provisional	98.86
PRK10803	263	tol-pal system protein YbgF; Provisional	98.85
PRK10803	263	tol-pal system protein YbgF; Provisional	98.85
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.85
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.84
PRK15331	165	chaperone protein SicA; Provisional	98.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.79
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.79
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.79
PF12688	120	TPR_5: Tetratrico peptide repeat	98.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.71
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.7
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
PF12688	120	TPR_5: Tetratrico peptide repeat	98.7
KOG4234	271	consensus TPR repeat-containing protein [General f	98.68
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.67
KOG4234	271	consensus TPR repeat-containing protein [General f	98.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.65
PF13371	73	TPR_9: Tetratricopeptide repeat	98.62
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.57
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.56
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.51
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.47
KOG4555	175	consensus TPR repeat-containing protein [Function	98.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.46
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.45
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.45
PF13512	142	TPR_18: Tetratricopeptide repeat	98.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.41
KOG1586	288	consensus Protein required for fusion of vesicles	98.4
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.36
PF13512	142	TPR_18: Tetratricopeptide repeat	98.34
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.27
KOG4555	175	consensus TPR repeat-containing protein [Function	98.22
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.18
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.17
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.14
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.12
PF13428	44	TPR_14: Tetratricopeptide repeat	98.07
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.03
KOG1585	308	consensus Protein required for fusion of vesicles	98.03
KOG2471	696	consensus TPR repeat-containing protein [General f	98.01
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.99
PF13428	44	TPR_14: Tetratricopeptide repeat	97.98
KOG1586	288	consensus Protein required for fusion of vesicles	97.92
KOG1258	577	consensus mRNA processing protein [RNA processing	97.92
PF13431	34	TPR_17: Tetratricopeptide repeat	97.89
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.88
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.88
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.84
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.81
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.8
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.8
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.77
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.75
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.71
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.71
KOG1585	308	consensus Protein required for fusion of vesicles	97.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.65
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.65
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.63
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.62
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.59
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.54
KOG2471	696	consensus TPR repeat-containing protein [General f	97.53
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.52
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.43
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
KOG1258	577	consensus mRNA processing protein [RNA processing	97.4
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.39
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.37
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.34
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.34
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.27
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.25
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.25
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.22
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.18
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.16
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.02
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.0
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.97
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.96
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.95
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.95
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.94
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.94
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.93
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.88
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.85
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.85
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.81
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.75
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.73
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.69
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.61
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.59
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.59
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.59
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.51
PRK10941	269	hypothetical protein; Provisional	96.49
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.45
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.4
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.21
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.17
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.14
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.13
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.11
PRK10941	269	hypothetical protein; Provisional	96.06
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.03
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.02
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.01
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.0
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.99
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.99
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.98
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.83
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	95.73
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.73
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.7
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.68
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.66
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.65
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.64
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.61
KOG1310	758	consensus WD40 repeat protein [General function pr	95.44
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.38
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.37
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.31
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.28
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	95.26
COG4941	415	Predicted RNA polymerase sigma factor containing a	95.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.09
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.07
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.03
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.02
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.87
KOG1310	758	consensus WD40 repeat protein [General function pr	94.81
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.64
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.62
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.6
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.53
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.51
KOG2422	665	consensus Uncharacterized conserved protein [Funct	94.45
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.21
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.19
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.06
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.01
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	94.01
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.95
KOG3364	149	consensus Membrane protein involved in organellar	93.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.83
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.71
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.63
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.6
KOG3364	149	consensus Membrane protein involved in organellar	93.47
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.45
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.42
COG2912	269	Uncharacterized conserved protein [Function unknow	93.02
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.79
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.76
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.76
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.27
KOG4014	248	consensus Uncharacterized conserved protein (conta	92.16
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.13
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.0
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.94
COG2912	269	Uncharacterized conserved protein [Function unknow	91.86
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.71
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.67
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.55
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.25
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.66
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.65
KOG2581	493	consensus 26S proteasome regulatory complex, subun	90.43
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.41
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.27
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.89
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.67
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.63
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.46
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.11
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	88.6
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.59
PRK12798	421	chemotaxis protein; Reviewed	88.59
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.39
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.3
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.25
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.18
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.75
COG3947	361	Response regulator containing CheY-like receiver a	87.35
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.12
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.02
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.23
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	85.78
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	85.76
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.51
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	85.4
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.39
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.03
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.85
KOG2581	493	consensus 26S proteasome regulatory complex, subun	84.84
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	83.29
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	83.06
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.62
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.57
COG3947	361	Response regulator containing CheY-like receiver a	82.11
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	82.11
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.71
KOG1463	411	consensus 26S proteasome regulatory complex, subun	81.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	80.76
KOG3783	546	consensus Uncharacterized conserved protein [Funct	80.62

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=7e-33  Score=269.44  Aligned_cols=247  Identities=16%  Similarity=0.160  Sum_probs=240.5

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      .+..+|..++.+++ .+..+|+++|++|-..+.+++|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+..|+++++
T Consensus       236 ~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~  314 (966)
T KOG4626|consen  236 LAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE  314 (966)
T ss_pred             HHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence            67889999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------  330 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------  330 (436)
                      +.|..+.++.++|..+-..|. ..+|+.+|.+++.+.|++++++++||.++.++|.++.|..+|...+..          
T Consensus       315 ~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN  393 (966)
T KOG4626|consen  315 LQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN  393 (966)
T ss_pred             cCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence            999999999999999999875 999999999999999999999999999999999999999999988776          


Q ss_pred             --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821          331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED  408 (436)
Q Consensus       331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  408 (436)
                        .+|.++|++++|+.+|+.||++.|..++++.++|.+|..+|+ .+.|+.+|.+|++++|...+++.+||.+|...|+.
T Consensus       394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni  472 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI  472 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence              889999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChhHHh
Q 013821          409 EDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       409 ~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      .+|+..|++++.+.|+|+++.-
T Consensus       473 ~~AI~sY~~aLklkPDfpdA~c  494 (966)
T KOG4626|consen  473 PEAIQSYRTALKLKPDFPDAYC  494 (966)
T ss_pred             HHHHHHHHHHHccCCCCchhhh
Confidence            9999999999999999998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=253.82  Aligned_cols=250  Identities=14%  Similarity=0.102  Sum_probs=237.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      .-.+|...|.+++...+ .++.+|.++|-++...|+...|+..|++++.++|...++|+++|.+|...+.+++|+..|.+
T Consensus       199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            44577888999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      |+.+.|+.+.++-++|.+|+++| +.+-|+.+|++++++.|+.++++.+++.++.+.|+..+|.+.|.+++..       
T Consensus       278 Al~lrpn~A~a~gNla~iYyeqG-~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada  356 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYEQG-LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA  356 (966)
T ss_pred             HHhcCCcchhhccceEEEEeccc-cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence            99999999999999999999987 4999999999999999999999999999999999999999999988776       


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                           .++..+|.+++|...|+++++..|+.+.++.+||.+|.++|+ +++|+.+|+.++.+.|...+++.++|..|..+
T Consensus       357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-LDDAIMCYKEALRIKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence                 889999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCChhHHh
Q 013821          406 EEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       406 g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      |+...|+..|.+++.++|.|.++-.
T Consensus       436 g~v~~A~q~y~rAI~~nPt~AeAhs  460 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQINPTFAEAHS  460 (966)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHh
Confidence            9999999999999999999888655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=8.6e-24  Score=222.74  Aligned_cols=247  Identities=13%  Similarity=0.045  Sum_probs=221.5

Q ss_pred             CCCChHHHHHhhcCCCC--CCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISV--PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY  255 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  255 (436)
                      .+.++..++..++....  .....+|..+|.++...|++++|+..|+++++.+|.+..+|..+|.++...|++++|+..|
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~  388 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF  388 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34466677777776542  1566889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821          256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----  330 (436)
Q Consensus       256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  330 (436)
                      +++++.+|+++.+++.+|.+++..++ +++|+.+|+++++++|++..++..+|.++..+|++++|+..+.+++..     
T Consensus       389 ~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~  467 (615)
T TIGR00990       389 DKALKLNSEDPDIYYHRAQLHFIKGE-FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP  467 (615)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999875 999999999999999999999999999999999999999999988875     


Q ss_pred             -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEI------MSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~-~g~d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                             .++...|++++|+..|++++.+.|.+...      +...+.+++. .|+ +++|+.+|+++++++|++..++.
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~-~~eA~~~~~kAl~l~p~~~~a~~  546 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD-FIEAENLCEKALIIDPECDIAVA  546 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCcHHHHH
Confidence                   78889999999999999999999875433      3333444444 577 99999999999999999999999


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          397 AYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       397 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      .+|.++..+|++++|+.+|++++++.+...
T Consensus       547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       547 TMAQLLLQQGDVDEALKLFERAAELARTEG  576 (615)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence            999999999999999999999999977533

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=2.3e-23  Score=219.58  Aligned_cols=245  Identities=11%  Similarity=0.032  Sum_probs=217.2

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+++.|..+|.+++.+.+ + +..|.++|.++..+|++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|.
T Consensus       141 ~~~~~Ai~~y~~al~~~p-~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~  218 (615)
T TIGR00990       141 KDFNKAIKLYSKAIECKP-D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT  218 (615)
T ss_pred             CCHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            477789999999999988 4 67899999999999999999999999999999999999999999999999988876443


Q ss_pred             HHH-----------------------------------------------------------------------------
Q 013821          257 HAT-----------------------------------------------------------------------------  259 (436)
Q Consensus       257 ~al-----------------------------------------------------------------------------  259 (436)
                      .++                                                                             
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (615)
T TIGR00990       219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG  298 (615)
T ss_pred             HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence            322                                                                             


Q ss_pred             -----------------------Hh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          260 -----------------------MA---DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE  313 (436)
Q Consensus       260 -----------------------~~---~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  313 (436)
                                             ..   .|....++..+|.+++.+++ +++|+..|+++++++|++...+..+|.++..
T Consensus       299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~~~~~~~la~~~~~  377 (615)
T TIGR00990       299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-HLEALADLSKSIELDPRVTQSYIKRASMNLE  377 (615)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence                                   11   24455677788888877764 9999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821          314 MEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF  381 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~  381 (436)
                      .|++++|+..+++.+..            .++...|++++|+.+|+++++++|++..++..+|.++..+|+ +++|+..|
T Consensus       378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-~~eA~~~~  456 (615)
T TIGR00990       378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-IASSMATF  456 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence            99999999999887776            778889999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          382 ERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       382 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      ++++...|.++.++..+|.++..+|++++|++.|++++.+.|..
T Consensus       457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999998764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=1.2e-22  Score=214.42  Aligned_cols=246  Identities=12%  Similarity=0.066  Sum_probs=156.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++.++...+...+...+ ....++..+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus        57 ~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~  135 (656)
T PRK15174         57 ETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ  135 (656)
T ss_pred             CcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55566666666666666 56666777777667777777777777777777777777777777777777777777777777


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++++|+++.++..++.++...++ +++|+..+++++...|++..++..++ .+...|++++|+..+...+..       
T Consensus       136 Al~l~P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~  213 (656)
T PRK15174        136 AWLAFSGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE  213 (656)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence            777777777777777777666654 77777777777777777666665543 355666666666666543332       


Q ss_pred             ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK----ALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~e----A~~~~~~al~~~p~~~~~~~~la~  400 (436)
                            .++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++    |+..|+++++++|++..++..+|.
T Consensus       214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~  292 (656)
T PRK15174        214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHALQFNSDNVRIVTLYAD  292 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence                  234455555555555555555555555555555555555555 543    555555555555555555555555


Q ss_pred             HHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          401 FLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       401 ~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ++...|++++|+..+++++.+.|+...
T Consensus       293 ~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        293 ALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            555555555555555555555555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=3.9e-22  Score=210.38  Aligned_cols=244  Identities=11%  Similarity=0.065  Sum_probs=158.0

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.|...+.+.+.+++ +++.+|..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++
T Consensus        91 ~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~  169 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART  169 (656)
T ss_pred             CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            55677888888888888 78888999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHhCCCCHHHHHHHH----------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          258 ATMADPGDGESWMQYA----------------------------------KLVWELHRDQHRALTYFERAALAAPQDSNI  303 (436)
Q Consensus       258 al~~~p~~~~~~~~la----------------------------------~~~~~~~~d~~~A~~~~~~al~~~p~~~~~  303 (436)
                      ++...|+++.++..++                                  .++...+ ++++|+..|+++++.+|+++.+
T Consensus       170 ~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g-~~~eA~~~~~~al~~~p~~~~~  248 (656)
T PRK15174        170 QAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVG-KYQEAIQTGESALARGLDGAAL  248 (656)
T ss_pred             HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHH
Confidence            8888888776665443                                  2223333 2455555555555555555555


Q ss_pred             HHHHHHHHHHccCchH----HHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          304 LAAYACFLWEMEDDGE----DDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV  367 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~----A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  367 (436)
                      +..+|.++...|++++    |+..+++.+..            .++...|++++|+.+++++++++|+++.++..+|.++
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5555555555555543    44444444433            4445555555555555555555555555555555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      ...|+ +++|+..|++++..+|++...+..+|.++...|++++|+..|++++++.|.
T Consensus       329 ~~~G~-~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        329 RQVGQ-YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHCCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            55555 555555555555555555444444455555555555555555555555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.6e-23  Score=204.00  Aligned_cols=208  Identities=15%  Similarity=0.121  Sum_probs=197.0

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ..+.+|..+|+++--+++++.|+++|+++++++|..+.+|..+|.-+....++|.|..+|++|+..+|.+-.+|+.+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            55689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      |.++++ ++.|+-+|++|++++|.+......+|                      .++.+.|+.++|+.+|++|+.++|.
T Consensus       499 y~Kqek-~e~Ae~~fqkA~~INP~nsvi~~~~g----------------------~~~~~~k~~d~AL~~~~~A~~ld~k  555 (638)
T KOG1126|consen  499 YLKQEK-LEFAEFHFQKAVEINPSNSVILCHIG----------------------RIQHQLKRKDKALQLYEKAIHLDPK  555 (638)
T ss_pred             eeccch-hhHHHHHHHhhhcCCccchhHHhhhh----------------------HHHHHhhhhhHHHHHHHHHHhcCCC
Confidence            999986 99999999999999999999998899                      8899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ++-..+..|.+++.+++ +++|+..+++..++.|+...+++.+|.+|.++|+.+.|+..|--|+.++|.-..
T Consensus       556 n~l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  556 NPLCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             CchhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            99999999999999999 999999999999999999999999999999999999999999999999987554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.89  E-value=2.8e-21  Score=216.56  Aligned_cols=246  Identities=15%  Similarity=0.125  Sum_probs=218.1

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQL----------------  241 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~----------------  241 (436)
                      ++++|..++.+++.+++ ....++..+|.++...|++++|+++|+++++.+|++..++..++.+                
T Consensus       366 ~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        366 NLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            55678888999999999 7889999999999999999999999999999999988776655544                


Q ss_pred             --------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          242 --------------------------LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL  295 (436)
Q Consensus       242 --------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~  295 (436)
                                                +...|++++|+..|+++++++|+++.+++.+|.++...++ +++|+..|+++++
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l~~al~  523 (1157)
T PRK11447        445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALMRRLAQ  523 (1157)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence                                      4467999999999999999999999999999999999875 9999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH----------------------------------------HH-----
Q 013821          296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI----------------------------------------QV-----  330 (436)
Q Consensus       296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------------------------------------~~-----  330 (436)
                      ..|+++.+++.++.++...++.++|+..++...                                        +.     
T Consensus       524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~  603 (1157)
T PRK11447        524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST  603 (1157)
T ss_pred             cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence            999999999888888888887777766654210                                        00     


Q ss_pred             -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW  403 (436)
Q Consensus       331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~  403 (436)
                             .++...|++++|+..|+++++.+|+++.++..++.++...|+ +++|+..|+++++..|+++.++..+|.++.
T Consensus       604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~~~~~~~la~~~~  682 (1157)
T PRK11447        604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDSLNTQRRVALAWA  682 (1157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence                   677888999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HCCChHHHHHHHHHHHhhCCCCh
Q 013821          404 ETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       404 ~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      ..|++++|+++|++++...|...
T Consensus       683 ~~g~~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        683 ALGDTAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             hCCCHHHHHHHHHHHhhhCccCC
Confidence            99999999999999998875543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.89  E-value=4.4e-21  Score=214.98  Aligned_cols=213  Identities=15%  Similarity=0.154  Sum_probs=176.0

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL--------------LLRNYAQLL  242 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------~~~~la~~~  242 (436)
                      .++++|..++.+++.+.+ .++.++..+|.++...|++++|+.+|+++++.+|++..              ....+|.++
T Consensus       283 g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            366788999999999999 78999999999999999999999999999999997642              224568889


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      ...|++++|+..|+++++++|.+..++..+|.++...++ +++|+++|+++++++|++..++..++.++.. ++.++|+.
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~  439 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALA  439 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHH
Confidence            999999999999999999999999999999999998875 9999999999999999999999888887753 45666666


Q ss_pred             HHHHHHH---------------------HhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821          323 AQEEHIQ---------------------VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF  381 (436)
Q Consensus       323 ~~~~~~~---------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~  381 (436)
                      .++.+..                     ..++...|++++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l  518 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALM  518 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            5542210                     0455667888888888888888888888888888888888877 88888888


Q ss_pred             HHHHHhCCCCHH
Q 013821          382 ERAVQASPADSH  393 (436)
Q Consensus       382 ~~al~~~p~~~~  393 (436)
                      +++++..|+++.
T Consensus       519 ~~al~~~P~~~~  530 (1157)
T PRK11447        519 RRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHcCCCCHH
Confidence            777777776554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1e-21  Score=187.62  Aligned_cols=222  Identities=17%  Similarity=0.201  Sum_probs=205.0

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  280 (436)
                      ....|.+++-.|++-.|...|+++|.++|.+...|..+|.+|....+.++-...|.+|..++|+++.+|++.|.+++-++
T Consensus       329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~  408 (606)
T KOG0547|consen  329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ  408 (606)
T ss_pred             HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence            33344588888999999999999999999999889999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013821          281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR  348 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~  348 (436)
                      + +++|+..|++++.++|.+..++..++.++++++++++++..+++.+++            .++..+++|++|++.|..
T Consensus       409 q-~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  409 Q-YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK  487 (606)
T ss_pred             H-HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence            5 999999999999999999999999999999999999999999988888            888899999999999999


Q ss_pred             HHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          349 AILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       349 al~~~p~------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      |+++.|.      ++..+...|.+..++.+|+.+|+.++.+|++++|....++..||.+..++|+.++|+++|+++..+.
T Consensus       488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999      7778888888887777779999999999999999999999999999999999999999999998875


Q ss_pred             C
Q 013821          423 P  423 (436)
Q Consensus       423 p  423 (436)
                      .
T Consensus       568 r  568 (606)
T KOG0547|consen  568 R  568 (606)
T ss_pred             H
Confidence            3

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=1.9e-20  Score=204.44  Aligned_cols=243  Identities=13%  Similarity=0.110  Sum_probs=154.0

Q ss_pred             CChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      +++..++..++...+ .....+..++.++...|++++|+.++++++...|.+..+|..+|.++...|++++|+..|++++
T Consensus       550 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  628 (899)
T TIGR02917       550 EEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL  628 (899)
T ss_pred             HHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445555555555 4445566666666667777777777777777677777777777777777777777777777777


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013821          260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------  330 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------  330 (436)
                      +.+|.++.++..+|.++...++ +++|+..|+++++.+|++..++..++.++...|++++|...+......         
T Consensus       629 ~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  707 (899)
T TIGR02917       629 ALQPDSALALLLLADAYAVMKN-YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE  707 (899)
T ss_pred             HhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence            7777777777777777666653 777777777777777776666666666666666666666666544332         


Q ss_pred             ---hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          331 ---LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       331 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                         .++...|++++|+..|++++...|++ ..+..++.++...|+ +++|+..+++++...|++..++..+|.++...|+
T Consensus       708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~  785 (899)
T TIGR02917       708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN-TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD  785 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence               45555666666666666666665554 455555555555555 5666666666666566555555666666666666


Q ss_pred             hHHHHHHHHHHHhhCCCCh
Q 013821          408 DEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       408 ~~eA~~~~~~al~l~p~~~  426 (436)
                      +++|+..|+++++..|+..
T Consensus       786 ~~~A~~~~~~~~~~~p~~~  804 (899)
T TIGR02917       786 YDKAIKHYRTVVKKAPDNA  804 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            6666666666655555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=2.3e-20  Score=203.82  Aligned_cols=243  Identities=15%  Similarity=0.136  Sum_probs=166.0

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.+..++.......+ .....|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++
T Consensus       582 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  660 (899)
T TIGR02917       582 QLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR  660 (899)
T ss_pred             CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44556666666666666 56788889999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++.+|++..++..++.++...++ +++|+..++++.+..|.+...+..+|.++...|++++|...+.+.+..       
T Consensus       661 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  739 (899)
T TIGR02917       661 ALELKPDNTEAQIGLAQLLLAAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA  739 (899)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH
Confidence            999888888887777777776654 777777777777777777777777777777777777777777655543       


Q ss_pred             ----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821          331 ----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE  406 (436)
Q Consensus       331 ----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  406 (436)
                          .++...|++++|+..++++++.+|++..+++.+|.++..+|+ +++|+..|+++++..|+++.++..++.++...|
T Consensus       740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  818 (899)
T TIGR02917       740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK  818 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence                444455555555555555555555555555555555555555 555555555555555555544444444444444


Q ss_pred             ChHHHHHHHHHHHhhCCC
Q 013821          407 EDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~p~  424 (436)
                      + .+|+.++++++.+.|+
T Consensus       819 ~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       819 D-PRALEYAEKALKLAPN  835 (899)
T ss_pred             c-HHHHHHHHHHHhhCCC
Confidence            4 3344444444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=4.1e-20  Score=200.03  Aligned_cols=241  Identities=10%  Similarity=0.007  Sum_probs=211.7

Q ss_pred             hHHHHHhhcCCCCCC--chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          182 PPMYLAMGLGISVPG--FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       182 a~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      +...+.+++...+ .  .+.+|.++|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|++++
T Consensus       460 ~~~~~~~al~~~p-~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        460 NCPAIVRLLGDMS-PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS  536 (987)
T ss_pred             hHHHHHHhcccCC-CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            4455666666666 5  78899999999987 888999999999999999754 46677888889999999999999987


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013821          260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------  330 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------  330 (436)
                      ...|.+ ..++.+|.++...+ ++++|+.+|+++++.+|.+...+..++..+...|++++|+..+++.++.         
T Consensus       537 ~~~p~~-~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~  614 (987)
T PRK09782        537 LHDMSN-EDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA  614 (987)
T ss_pred             ccCCCc-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence            775554 45778888888876 5999999999999999998888887777777889999999999988864         


Q ss_pred             --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821          331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED  408 (436)
Q Consensus       331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  408 (436)
                        .++.+.|++++|+..|++++.++|+++.++.++|.++...|+ +++|+..|+++++++|+++.++.++|.++..+|++
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence              788999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChhH
Q 013821          409 EDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       409 ~eA~~~~~~al~l~p~~~~~  428 (436)
                      ++|+..|++++++.|+....
T Consensus       694 ~eA~~~l~~Al~l~P~~a~i  713 (987)
T PRK09782        694 AATQHYARLVIDDIDNQALI  713 (987)
T ss_pred             HHHHHHHHHHHhcCCCCchh
Confidence            99999999999999976543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=4.9e-20  Score=183.57  Aligned_cols=247  Identities=16%  Similarity=0.108  Sum_probs=213.2

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED  253 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~  253 (436)
                      +++.+..++..++..++ .+..++..+|.++...|++++|+.++++++...+..    ..++..+|.+|...|++++|+.
T Consensus        50 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         50 QPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             ChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            55678888999999988 678889999999999999999999999988854322    2568899999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821          254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-----NILAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      +|+++++.+|.+..++..++.++...++ +++|++.++++++..|.+.     ..+..++.++...|++++|...+.+++
T Consensus       129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        129 LFLQLVDEGDFAEGALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999999999999888875 9999999999999887753     245678888999999999999998877


Q ss_pred             HH------------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          329 QV------------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL  395 (436)
Q Consensus       329 ~~------------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~  395 (436)
                      +.            .++...|++++|++.|++++..+|.+ ..++..++.++...|+ +++|+..++++++..|+... +
T Consensus       208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~l~~~~~~~p~~~~-~  285 (389)
T PRK11788        208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEFLRRALEEYPGADL-L  285 (389)
T ss_pred             hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchH-H
Confidence            65            67888999999999999999988876 4667889999999999 99999999999999997654 4


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821          396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       396 ~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      ..++.++.+.|++++|+..++++++..|+....
T Consensus       286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~  318 (389)
T PRK11788        286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGF  318 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence            889999999999999999999999998876543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=4.7e-20  Score=183.69  Aligned_cols=232  Identities=14%  Similarity=0.067  Sum_probs=206.7

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKL  275 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~  275 (436)
                      ..+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..    ..++..+|.+
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~  116 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD  116 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            455567778888999999999999999999999999999999999999999999999998864333    3578899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------hHHHHcCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------------LPIQSKGD  338 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~  338 (436)
                      +...++ +++|+..|+++++..|.+..++..++.++...|++++|+..+...++.                 .++...|+
T Consensus       117 ~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  195 (389)
T PRK11788        117 YLKAGL-LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD  195 (389)
T ss_pred             HHHCCC-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence            988875 999999999999999999999999999999999999999999876553                 34567899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      +++|+.+|+++++.+|++..++..+|.++...|+ +++|+..|++++..+|.+ ..++..++.+|...|++++|+..+++
T Consensus       196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999876 36678899999999999999999999


Q ss_pred             HHhhCCCChhHHhhhh
Q 013821          418 FQQVAPIRQGAVTTAN  433 (436)
Q Consensus       418 al~l~p~~~~~~~~a~  433 (436)
                      ++...|+.......+.
T Consensus       275 ~~~~~p~~~~~~~la~  290 (389)
T PRK11788        275 ALEEYPGADLLLALAQ  290 (389)
T ss_pred             HHHhCCCchHHHHHHH
Confidence            9999988654433333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.87  E-value=8.4e-20  Score=166.98  Aligned_cols=202  Identities=22%  Similarity=0.279  Sum_probs=188.4

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          278 ELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      ..++ +++|+..|++++...  +.....+..+|                      .++...|++++|+.+|.+++..+|.
T Consensus       111 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       111 QQGK-YEQAMQQFEQAIEDPLYPQPARSLENAG----------------------LCALKAGDFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             Hccc-HHHHHHHHHHHHhccccccchHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            8875 999999999999864  45677788888                      8888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      +..++..+|.++...|+ +++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       168 ~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       168 RPESLLELAELYYLRGQ-YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            99999999999999999 99999999999999998899999999999999999999999888776644

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.2e-21  Score=191.00  Aligned_cols=222  Identities=15%  Similarity=0.155  Sum_probs=197.6

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--------------------------------
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------------------------------  228 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------  228 (436)
                      +|...|..-...-. +.+-....+|..|+.+++|++|+++|+.+-+..                                
T Consensus       337 ~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~  415 (638)
T KOG1126|consen  337 EALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID  415 (638)
T ss_pred             HHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            55555555333323 444555789999999999999999998876554                                


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          229 --PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       229 --P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                        |+.++.|..+|+||--+++++.|++.|++|++++|....+|-.+|.=+.... ++|.|..+|++|+..+|.+..+|+.
T Consensus       416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al~~~~rhYnAwYG  494 (638)
T KOG1126|consen  416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE-EFDKAMKSFRKALGVDPRHYNAWYG  494 (638)
T ss_pred             hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH-HHHhHHHHHHhhhcCCchhhHHHHh
Confidence              5667889999999999999999999999999999999999999998777776 4999999999999999999999999


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ  386 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~  386 (436)
                      +|                      .+|.++++++.|+-.|++|++++|.+......+|.++.++|+ .++|+.+|++|+.
T Consensus       495 lG----------------------~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  495 LG----------------------TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH  551 (638)
T ss_pred             hh----------------------hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh
Confidence            99                      999999999999999999999999999999999999999999 9999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          387 ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       387 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ++|.++...+..+.+++.++++++|+..+++.-++-|+-.-
T Consensus       552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~  592 (638)
T KOG1126|consen  552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS  592 (638)
T ss_pred             cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence            99999999999999999999999999999999999886443

>PRK12370 invasion protein regulator; Provisional

Probab=99.86  E-value=6.5e-20  Score=190.43  Aligned_cols=189  Identities=13%  Similarity=0.069  Sum_probs=136.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d  282 (436)
                      +++++|+.+|+++++.+|+++.+|..+|.++...         +++++|+..++++++++|+++.++..+|.++...++ 
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~-  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE-  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence            5578999999999999999999999999887643         348899999999999999999999999999888874 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      +++|+..|+++++++|+++.+++.+|                      .++...|++++|+..++++++++|.++..+..
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg----------------------~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYG----------------------WNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            99999999999999999999999999                      55555555555555555555555555554444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      ++.+++..|+ +++|+..+++++... |+++.++..+|.++..+|++++|+..++++....|.
T Consensus       412 ~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~  473 (553)
T PRK12370        412 KLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT  473 (553)
T ss_pred             HHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence            4444555555 555555555555443 445555555555555555555555555555444443

>PRK12370 invasion protein regulator; Provisional

Probab=99.86  E-value=1.1e-19  Score=188.86  Aligned_cols=215  Identities=8%  Similarity=-0.027  Sum_probs=193.7

Q ss_pred             CChHHHHHhhcCCCCCCchhhhhhHHhhhhh---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 013821          180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPN---------FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR  250 (436)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  250 (436)
                      ..|..++.+++.+++ +++.+|..+|.++..         .+++++|+..++++++++|+++.++..+|.++...|++++
T Consensus       278 ~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~  356 (553)
T PRK12370        278 QQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV  356 (553)
T ss_pred             HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence            367788999999999 789899998876552         3458999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      |+..|+++++++|+++.+++.+|.++...|+ +++|+..++++++++|.++..+..++                      
T Consensus       357 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~----------------------  413 (553)
T PRK12370        357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKL----------------------  413 (553)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHH----------------------
Confidence            9999999999999999999999999999875 99999999999999999988777666                      


Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE  409 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  409 (436)
                      .+++..|++++|+..+++++... |+++.++.++|.++..+|+ +++|+..+++++...|....++..++..|...|+  
T Consensus       414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  490 (553)
T PRK12370        414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--  490 (553)
T ss_pred             HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--
Confidence            66677899999999999999885 7889999999999999999 9999999999999999988899999999998884  


Q ss_pred             HHHHHHHHHHhh
Q 013821          410 DDSKSSDQFQQV  421 (436)
Q Consensus       410 eA~~~~~~al~l  421 (436)
                      +|...++++++.
T Consensus       491 ~a~~~l~~ll~~  502 (553)
T PRK12370        491 RALPTIREFLES  502 (553)
T ss_pred             HHHHHHHHHHHH
Confidence            777777776664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=2.6e-19  Score=157.04  Aligned_cols=207  Identities=22%  Similarity=0.245  Sum_probs=193.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +.+.+.+|.-|+..|++..|..-++++|+.+|++..+|..+|.+|...|+.+.|.+.|++|+.++|++.++++++|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          278 ELHRDQHRALTYFERAALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      .+++ +++|...|++|+..  .+.....+.++|                      .|..++|+++.|..+|+++|+++|+
T Consensus       115 ~qg~-~~eA~q~F~~Al~~P~Y~~~s~t~eN~G----------------------~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         115 AQGR-PEEAMQQFERALADPAYGEPSDTLENLG----------------------LCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             hCCC-hHHHHHHHHHHHhCCCCCCcchhhhhhH----------------------HHHhhcCCchhHHHHHHHHHHhCcC
Confidence            9985 99999999999985  467889999999                      9999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821          356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      ++.....++...+..|+ |..|..++++.....+-....+.....+-...|+.+.+-.+=.+.....|...+-
T Consensus       172 ~~~~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         172 FPPALLELARLHYKAGD-YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             CChHHHHHHHHHHhccc-chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            99999999999999999 9999999999998888888888888889999999999998888888888876553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.85  E-value=3.5e-19  Score=170.53  Aligned_cols=215  Identities=11%  Similarity=0.014  Sum_probs=170.0

Q ss_pred             HHHHhhcC---CCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          184 MYLAMGLG---ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       184 ~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      ..+...+.   +++...+..|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++
T Consensus        47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33444443   333344678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      ++|++..++.++|.+++..++ +++|++.|+++++++|+++.... +.                      .+....++++
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P~~~~~~~-~~----------------------~l~~~~~~~~  182 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDPNDPYRAL-WL----------------------YLAESKLDPK  182 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHH-HH----------------------HHHHccCCHH
Confidence            999999999999999998875 99999999999999999974211 11                      2334567899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013821          341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------VQASPADSHVLAAYACFLWETEEDEDDSK  413 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~eA~~  413 (436)
                      +|+..|.+++...+..  .|. ++.+...+|+ +.++ ..++.+       +++.|...++|+.+|.++.++|++++|+.
T Consensus       183 ~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~-~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~  257 (296)
T PRK11189        183 QAKENLKQRYEKLDKE--QWG-WNIVEFYLGK-ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA  257 (296)
T ss_pred             HHHHHHHHHHhhCCcc--ccH-HHHHHHHccC-CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999998776554322  222 4556666666 5433 233333       35666777889999999999999999999


Q ss_pred             HHHHHHhhCC-CChh
Q 013821          414 SSDQFQQVAP-IRQG  427 (436)
Q Consensus       414 ~~~~al~l~p-~~~~  427 (436)
                      +|+++++++| +|.+
T Consensus       258 ~~~~Al~~~~~~~~e  272 (296)
T PRK11189        258 LFKLALANNVYNFVE  272 (296)
T ss_pred             HHHHHHHhCCchHHH
Confidence            9999999885 5544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=8.9e-20  Score=173.54  Aligned_cols=207  Identities=19%  Similarity=0.203  Sum_probs=191.7

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  279 (436)
                      +..-+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.|-.+|+.+|+.|..+
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM  411 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence            44457888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI  359 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  359 (436)
                      +- +.=|+-+|++|+++.|+|...|..||                      .+|.+.++.++|+.+|++|+.....+..+
T Consensus       412 ~M-h~YaLyYfqkA~~~kPnDsRlw~aLG----------------------~CY~kl~~~~eAiKCykrai~~~dte~~~  468 (559)
T KOG1155|consen  412 KM-HFYALYYFQKALELKPNDSRLWVALG----------------------ECYEKLNRLEEAIKCYKRAILLGDTEGSA  468 (559)
T ss_pred             cc-hHHHHHHHHHHHhcCCCchHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHhccccchHH
Confidence            86 89999999999999999999999999                      88999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          360 MSQYAKLVWELHHDHDKALCYFERAVQ-------ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       360 ~~~la~~~~~~g~d~~eA~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +..||.++.++++ ..+|..+|++.++       ..|.-..+...|+..+.+.+++++|..+..+++.-.+.-.++..
T Consensus       469 l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~  545 (559)
T KOG1155|consen  469 LVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA  545 (559)
T ss_pred             HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence            9999999999999 9999999999998       44555678888999999999999999999988887666655544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.85  E-value=2.5e-19  Score=194.01  Aligned_cols=243  Identities=13%  Similarity=0.030  Sum_probs=203.2

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++.++...+..+....+ ... ...++|.++...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|++
T Consensus       491 ~~~eAi~a~~~Al~~~P-d~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~q  567 (987)
T PRK09782        491 LPGVALYAWLQAEQRQP-DAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQ  567 (987)
T ss_pred             CcHHHHHHHHHHHHhCC-chH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55566666666666666 322 34455666678888888888888877765543 4567888888888888888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++.+|.....+..++..+...+ ++++|+..|+++++++|+ ..++.++|.++.+.|++++|+..+.+.+..       
T Consensus       568 AL~l~P~~~~l~~~La~~l~~~G-r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a  645 (987)
T PRK09782        568 AEQRGLGDNALYWWLHAQRYIPG-QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY  645 (987)
T ss_pred             HHhcCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            88888888777766665555555 488888888888888886 888888888888888888888888877776       


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                           .++...|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|++..+...+|++....
T Consensus       646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence                 678899999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCCh
Q 013821          406 EEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       406 g~~~eA~~~~~~al~l~p~~~  426 (436)
                      .+++.|.+.|.++..+.|...
T Consensus       725 ~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        725 FNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHHHHHHHhhcCccch
Confidence            999999999999999988755

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=9.5e-20  Score=178.01  Aligned_cols=221  Identities=14%  Similarity=0.105  Sum_probs=185.0

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  280 (436)
                      -+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...+
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHHHHccCchHH--HHHHHHHHHHhHHHHcCC
Q 013821          281 RDQHRALTYFERAALAAPQDS--------------------NILAAYACFLWEMEDDGED--DKAQEEHIQVLPIQSKGD  338 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~--------------------~~~~~la~~~~~~g~~~~A--~~~~~~~~~~~~~~~~g~  338 (436)
                      - -.+|.+++.+-+...|...                    ..+..+...+.........  .--+...+- .+|.-.|+
T Consensus       368 ~-q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~e  445 (579)
T KOG1125|consen  368 L-QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGE  445 (579)
T ss_pred             h-HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchH
Confidence            5 7899999999887765321                    1111111111111110000  000000000 88889999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821          339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  418 (436)
                      |++|+.||+.||...|++...|+.||..+..-.+ ..+|+..|.+|+++.|..+.++++||..++.+|.|++|+++|-.|
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999998888 999999999999999999999999999999999999999999999


Q ss_pred             HhhCCC
Q 013821          419 QQVAPI  424 (436)
Q Consensus       419 l~l~p~  424 (436)
                      +.+.++
T Consensus       525 L~mq~k  530 (579)
T KOG1125|consen  525 LSMQRK  530 (579)
T ss_pred             HHhhhc
Confidence            999766

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.3e-18  Score=166.60  Aligned_cols=221  Identities=17%  Similarity=0.221  Sum_probs=202.4

Q ss_pred             hcCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821          176 IERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY  255 (436)
Q Consensus       176 ~~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  255 (436)
                      ..++..+-.-+..++.+++ .+...|+.++.+|+...+.++-...|.++..++|+++++|+.+|++++-.+++++|+..|
T Consensus       339 ~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             cCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            3466667777888888888 566779999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821          256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----  330 (436)
Q Consensus       256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  330 (436)
                      ++++.++|++...+..++.+++++++ ++++...|+.+++..|..++++...+.++.+++++++|.+.|+.++..     
T Consensus       418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~  496 (606)
T KOG0547|consen  418 QKAISLDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH  496 (606)
T ss_pred             HHHhhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999986 999999999999999999999999999999999999999999987766     


Q ss_pred             --------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          331 --------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       331 --------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                                    .++.-.+++.+|+.++++|++++|....++..+|.+..++|+ .++|+++|++++.+.....+...
T Consensus       497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~-i~eAielFEksa~lArt~~E~~~  575 (606)
T KOG0547|consen  497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK-IDEAIELFEKSAQLARTESEMVH  575 (606)
T ss_pred             cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhHHHHHH
Confidence                          445566999999999999999999999999999999999999 99999999999998776555444


Q ss_pred             HHH
Q 013821          397 AYA  399 (436)
Q Consensus       397 ~la  399 (436)
                      .+.
T Consensus       576 a~s  578 (606)
T KOG0547|consen  576 AYS  578 (606)
T ss_pred             HHH
Confidence            433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=1.5e-17  Score=178.96  Aligned_cols=246  Identities=13%  Similarity=0.063  Sum_probs=158.1

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++.+|..++.+++.+.+ .++.++..++.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++
T Consensus        64 ~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~  141 (765)
T PRK10049         64 QWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ  141 (765)
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence            45566666666666666 56666677777777777777777777777777777777 77777777777777777777777


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL------------------------------------------  295 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~------------------------------------------  295 (436)
                      +++..|+++.++..++.++...+ ..++|+..++++..                                          
T Consensus       142 al~~~P~~~~~~~~la~~l~~~~-~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~  220 (765)
T PRK10049        142 ALPRAPQTQQYPTEYVQALRNNR-LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD  220 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence            77777777777777776665443 36666655542110                                          


Q ss_pred             ----h---CCCCHH----H-----------------------------------HHHHHHHHHHccCchHHHHHHHHHHH
Q 013821          296 ----A---APQDSN----I-----------------------------------LAAYACFLWEMEDDGEDDKAQEEHIQ  329 (436)
Q Consensus       296 ----~---~p~~~~----~-----------------------------------~~~la~~~~~~g~~~~A~~~~~~~~~  329 (436)
                          .   +|....    +                                   ...++.++...|++++|+..+++.++
T Consensus       221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~  300 (765)
T PRK10049        221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY  300 (765)
T ss_pred             HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence                1   111100    0                                   00123333333444444443333222


Q ss_pred             H----------------hHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCHHHHH
Q 013821          330 V----------------LPIQSKGDLEGAEEYFSRAILANPG---------------DGEIMSQYAKLVWELHHDHDKAL  378 (436)
Q Consensus       330 ~----------------~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~d~~eA~  378 (436)
                      .                .++...|++++|+..+++++...|.               ...++..++.++...|+ +++|+
T Consensus       301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~eA~  379 (765)
T PRK10049        301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQAE  379 (765)
T ss_pred             cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHHHH
Confidence            1                1344556666666666666666552               13456677778888888 88888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ..+++++...|++..++..+|.++...|++++|++.+++++.+.|+...
T Consensus       380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~  428 (765)
T PRK10049        380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN  428 (765)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence            8888888888888888888888888888888888888888888887654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.82  E-value=4.5e-18  Score=173.47  Aligned_cols=219  Identities=17%  Similarity=0.210  Sum_probs=185.9

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ...++.++.++..|++++|+.++.++|+++|.++.+|+.||.+|.++|+.+++...+-.|-.++|.+.+.|..++.....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            56677778888888888888888888888888888888888888888888888888888888888888888888888777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------------------
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------  330 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------  330 (436)
                      ++. +.+|+-+|.+|++.+|.+....+..+.++.++|+...|+..+.+.++.                            
T Consensus       220 ~~~-i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  220 LGN-INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             ccc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            765 888888888888888888888888888888888888877776622221                            


Q ss_pred             --------------------------------------------------------------------------------
Q 013821          331 --------------------------------------------------------------------------------  330 (436)
Q Consensus       331 --------------------------------------------------------------------------------  330 (436)
                                                                                                      
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013821          331 -------------------------------------------LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKL  366 (436)
Q Consensus       331 -------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~  366 (436)
                                                                 .++...|++.+|+.+|..++...+. +..+|+.+|.|
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence                                                       6778889999999999988877653 46799999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                      |..+|. +++|+..|++++...|++.++...|+.++.++|+.++|++.+++..
T Consensus       459 ~~~l~e-~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  459 YMELGE-YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHhh-HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            999999 9999999999999999999999999999999999999988888765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.9e-18  Score=168.28  Aligned_cols=211  Identities=15%  Similarity=0.119  Sum_probs=192.7

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ..+..|+.+|..|+..|++.+|.++|.++..++|....+|..+|..+...|+.++|+..|.+|-++-|....-...+|.-
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme  389 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME  389 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            55689999999999999999999999999999999999999999999999999999999999999999987777788877


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP-  354 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-  354 (436)
                      |...+. +..|.++|.+|+.+.|.++.++..+|                      .+.+..+.|.+|..+|+.++..-+ 
T Consensus       390 y~~t~n-~kLAe~Ff~~A~ai~P~Dplv~~Elg----------------------vvay~~~~y~~A~~~f~~~l~~ik~  446 (611)
T KOG1173|consen  390 YMRTNN-LKLAEKFFKQALAIAPSDPLVLHELG----------------------VVAYTYEEYPEALKYFQKALEVIKS  446 (611)
T ss_pred             HHHhcc-HHHHHHHHHHHHhcCCCcchhhhhhh----------------------heeehHhhhHHHHHHHHHHHHHhhh
Confidence            777775 99999999999999999999999999                      888889999999999999995422 


Q ss_pred             ------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821          355 ------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       355 ------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                            .....+.+||.++.++++ +++|+.+|+++|.+.|.++.++..+|.+|..+|+.+.|++.|.++|.+.|+....
T Consensus       447 ~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~  525 (611)
T KOG1173|consen  447 VLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI  525 (611)
T ss_pred             ccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence                  234568999999999999 9999999999999999999999999999999999999999999999999987655


Q ss_pred             Hh
Q 013821          429 VT  430 (436)
Q Consensus       429 ~~  430 (436)
                      .+
T Consensus       526 ~~  527 (611)
T KOG1173|consen  526 SE  527 (611)
T ss_pred             HH
Confidence            44

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.3e-18  Score=162.15  Aligned_cols=195  Identities=17%  Similarity=0.206  Sum_probs=173.8

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HH-------------------------------HHHHHHHHHHcCCH
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LL-------------------------------LRNYAQLLQKKGDL  248 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~-------------------------------~~~la~~~~~~g~~  248 (436)
                      ..|.+.+...++++|+..|+..++.+|-..   +.                               ...+|+.|...++.
T Consensus       267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH  346 (559)
T KOG1155|consen  267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH  346 (559)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence            456688889999999999999999888422   11                               11235566677788


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821          249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      ++|+.+|++|++++|....+|..+|.=|.++.+ ...|+..|++|++++|.|..+|+.+|                    
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyRAWYGLG--------------------  405 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYRAWYGLG--------------------  405 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHHHHhhhh--------------------
Confidence            999999999999999999999999999999876 89999999999999999999999999                    


Q ss_pred             HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821          329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED  408 (436)
Q Consensus       329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  408 (436)
                        ..|.-++-..-|+-+|++|+.+.|.+...|..||.||.++++ .++|+++|.+++.....+..++..+|.+|.++++.
T Consensus       406 --QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~  482 (559)
T KOG1155|consen  406 --QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL  482 (559)
T ss_pred             --HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence              888888999999999999999999999999999999999999 99999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 013821          409 EDDSKSSDQFQQV  421 (436)
Q Consensus       409 ~eA~~~~~~al~l  421 (436)
                      .+|..+|++.++.
T Consensus       483 ~eAa~~yek~v~~  495 (559)
T KOG1155|consen  483 NEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999884

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=9.6e-18  Score=162.83  Aligned_cols=249  Identities=16%  Similarity=0.094  Sum_probs=215.5

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +.+++..+|..++.+++ .+..-|.+....+..+|+|++|+.--.+.++++|+.+..|..+|..+.-+|+|++|+..|.+
T Consensus        17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~   95 (539)
T KOG0548|consen   17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE   95 (539)
T ss_pred             cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence            66789999999999999 58888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHH-----------------------------------------------------------------
Q 013821          258 ATMADPGDGESWMQY-----------------------------------------------------------------  272 (436)
Q Consensus       258 al~~~p~~~~~~~~l-----------------------------------------------------------------  272 (436)
                      .++.+|.+......+                                                                 
T Consensus        96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~  175 (539)
T KOG0548|consen   96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD  175 (539)
T ss_pred             HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence            999999874443333                                                                 


Q ss_pred             -------------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          273 -------------------------------------------------------AKLVWELHRDQHRALTYFERAALAA  297 (436)
Q Consensus       273 -------------------------------------------------------a~~~~~~~~d~~~A~~~~~~al~~~  297 (436)
                                                                             |...+... ++..|+++|.++++++
T Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk-~f~~a~q~y~~a~el~  254 (539)
T KOG0548|consen  176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK-DFETAIQHYAKALELA  254 (539)
T ss_pred             HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh-hHHHHHHHHHHHHhHh
Confidence                                                                   33333332 3578999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------------------------------------
Q 013821          298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------------------------------------------  330 (436)
Q Consensus       298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------------------------------------  330 (436)
                       .+...+.+.+-++...|.+.+.+..+...++.                                               
T Consensus       255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~  333 (539)
T KOG0548|consen  255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL  333 (539)
T ss_pred             -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence             77777777777777777766555444422221                                               


Q ss_pred             --------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013821          331 --------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL  378 (436)
Q Consensus       331 --------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~  378 (436)
                                                      ..++..|+|..|+..|.+||..+|+++..|.+.|.||..+|. +..|+
T Consensus       334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL  412 (539)
T KOG0548|consen  334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEAL  412 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHH
Confidence                                            778899999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ..++++++++|++..+|...|.++..+.+|++|.+.|.++++.+|...+...
T Consensus       413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~  464 (539)
T KOG0548|consen  413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID  464 (539)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence            9999999999999999999999999999999999999999999998766543

>PLN02789 farnesyltranstransferase

Probab=99.80  E-value=1.1e-17  Score=160.34  Aligned_cols=215  Identities=13%  Similarity=0.116  Sum_probs=178.5

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      .++.-+-.++...+..++|+..+.++|+++|++..+|..++.++..+| ++++++..++++++.+|++..+|..++.++.
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~  117 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence            344444446667788899999999999999999999999999999988 6799999999999999999999999998887


Q ss_pred             HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          278 ELHRD-QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       278 ~~~~d-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                      ..+.. +++++.+++++++.+|++..+|...+                      +++...|++++|++++.++|+.+|.+
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~----------------------w~l~~l~~~~eeL~~~~~~I~~d~~N  175 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQ----------------------WVLRTLGGWEDELEYCHQLLEEDVRN  175 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence            77642 36789999999999999999999999                      88888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHh---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCCh
Q 013821          357 GEIMSQYAKLVWEL---HH---DHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       357 ~~~~~~la~~~~~~---g~---d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      ..+|+.++.++..+   |+   ..++++.+..+++.++|++..+|..++.++..    +++..+|+..+.+++...|+..
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~  255 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV  255 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence            99999999888765   33   02467888889999999999999999998887    4556778888888888777766


Q ss_pred             hHHh-hhhhc
Q 013821          427 GAVT-TANVY  435 (436)
Q Consensus       427 ~~~~-~a~~y  435 (436)
                      .+.. .+.+|
T Consensus       256 ~al~~l~d~~  265 (320)
T PLN02789        256 FALSDLLDLL  265 (320)
T ss_pred             HHHHHHHHHH
Confidence            5544 55554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=2.9e-18  Score=156.80  Aligned_cols=224  Identities=13%  Similarity=0.093  Sum_probs=208.2

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      ..+|.+|+++|.+.+|.+.++.+++..| .++.+..++.+|.+..++..|+..|...+...|.+...+..++.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            4689999999999999999999999988 889999999999999999999999999999999999999999999999986


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRA  349 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~a  349 (436)
                       +++|+++|+.+++.+|.+.++...++..++..++.+-|+..|++.++.            .++...++++-++..|++|
T Consensus       306 -~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  306 -QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             -HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence             999999999999999999999999999999999999999999988877            6777889999999999999


Q ss_pred             HHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          350 ILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       350 l~~~p---~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      +....   .-.++|+++|.+....|+ +.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+..
T Consensus       385 lstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  385 LSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            98743   236899999999999999 99999999999999999999999999999999999999999999999998865


Q ss_pred             hH
Q 013821          427 GA  428 (436)
Q Consensus       427 ~~  428 (436)
                      ++
T Consensus       464 E~  465 (478)
T KOG1129|consen  464 EV  465 (478)
T ss_pred             cc
Confidence            54

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.79  E-value=3.1e-19  Score=169.93  Aligned_cols=240  Identities=20%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             cCCCChHHHHHhhcCCC-CCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGIS-VPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY  255 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  255 (436)
                      .+|+.|...+..+..-. +..+...|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|+.++
T Consensus        22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~  100 (280)
T PF13429_consen   22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLA  100 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            46667777665544333 235667777777777778888888888888888777777777777777 6778888888887


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---
Q 013821          256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---  330 (436)
Q Consensus       256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  330 (436)
                      .++.+..+ ++..+..+..++...+ +++++...++++....  +.++..|..+|.++...|+.++|+..++++++.   
T Consensus       101 ~~~~~~~~-~~~~l~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  101 EKAYERDG-DPRYLLSALQLYYRLG-DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             ------------------H-HHHTT--HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             cccccccc-ccchhhHHHHHHHHHh-HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            77776553 4555666666666555 4788888887776554  567777777887777777777777666666655   


Q ss_pred             ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                               +++...|+++++.+.+....+..|.++..|..+|.++..+|+ +++|+.+|++++..+|+++.++..+|.+
T Consensus       179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccccccccccccccc
Confidence                     455556666666666666666666666666666777777766 6777777777777777767666777777


Q ss_pred             HHHCCChHHHHHHHHHHHh
Q 013821          402 LWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       402 ~~~~g~~~eA~~~~~~al~  420 (436)
                      +...|+.++|..++++++.
T Consensus       258 l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  258 LEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HT-----------------
T ss_pred             ccccccccccccccccccc
Confidence            7777777777666666654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.79  E-value=1.5e-18  Score=165.29  Aligned_cols=205  Identities=21%  Similarity=0.221  Sum_probs=108.7

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.+...+.+.+..+. ..+..+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++...++++++...+++
T Consensus        59 ~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~  135 (280)
T PF13429_consen   59 DYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK  135 (280)
T ss_dssp             --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred             ccccccccccccccccc-cccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence            55567777777777776 566667777777 688999999999999888664 567778888889999999999999999


Q ss_pred             HHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821          258 ATMAD--PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----  330 (436)
Q Consensus       258 al~~~--p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  330 (436)
                      +....  +.++.+|..+|.++...|+ +++|+.+|+++++++|++..++..++.++...|+.+++..++..+.+.     
T Consensus       136 ~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~  214 (280)
T PF13429_consen  136 LEELPAAPDSARFWLALAEIYEQLGD-PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP  214 (280)
T ss_dssp             HHH-T---T-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence            87655  6788899999999888875 999999999999999999999999999999999999888888766655     


Q ss_pred             -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                             .++...|++++|+.+|+++++.+|+++.++..+|.++...|+ .++|..++++++..
T Consensus       215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~-~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR-KDEALRLRRQALRL  277 (280)
T ss_dssp             CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHHhccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence                   889999999999999999999999999999999999999999 99999999998753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.78  E-value=1.9e-17  Score=145.34  Aligned_cols=167  Identities=19%  Similarity=0.199  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      .+...+|.-|+..|++..|..-+++|++.+|++..+|..+|.+|...|. .+.|.+.|++|+.++|++.++++++|    
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAlsl~p~~GdVLNNYG----  110 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLAPNNGDVLNNYG----  110 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCCccchhhhhh----
Confidence            6788999999999999999999999999999999999999999888875 99999999999999999999999999    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                                        +.++.+|++++|..+|++|+..  .+....+|.|+|.|..++|+ ++.|..+|+++++++|+
T Consensus       111 ------------------~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~  171 (250)
T COG3063         111 ------------------AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQ  171 (250)
T ss_pred             ------------------HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcC
Confidence                              8888899999999999999975  35667899999999999999 99999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       391 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      ++.....++..+++.|++..|..++++....-+
T Consensus       172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             CChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence            999999999999999999999999998877655

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.78  E-value=1.1e-16  Score=146.31  Aligned_cols=173  Identities=22%  Similarity=0.258  Sum_probs=161.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      .+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...++ +++|++.|+++++..|.+..++..++  
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~--  106 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-LEKAEDSFRRALTLNPNNGDVLNNYG--  106 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH--
Confidence            468899999999999999999999999999999999999999999999875 99999999999999999999999999  


Q ss_pred             HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                                          .++...|++++|+..|++++...  +.....+..+|.++...|+ +++|+..+.+++...
T Consensus       107 --------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~  165 (234)
T TIGR02521       107 --------------------TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQID  165 (234)
T ss_pred             --------------------HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence                                88889999999999999999864  5567889999999999999 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      |++..++..++.++...|++++|+..+++++.+.|....
T Consensus       166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  204 (234)
T TIGR02521       166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE  204 (234)
T ss_pred             cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999998765433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.76  E-value=5.6e-16  Score=154.63  Aligned_cols=215  Identities=13%  Similarity=0.064  Sum_probs=167.6

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~  283 (436)
                      +......|+++.|..+|+++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...+ |+
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw  203 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AW  203 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hH
Confidence            44446667777777777777666666542 22334666667777777777777777777777777777766666665 36


Q ss_pred             HHHHHHHHHHH------------------------------------------HhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          284 HRALTYFERAA------------------------------------------LAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       284 ~~A~~~~~~al------------------------------------------~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      ++|++.+.+..                                          +..|+++.++..++..+...|+.++|.
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            66664443333                                          233557788889999999999999999


Q ss_pred             HHHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          322 KAQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       322 ~~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      ..+++.++.         ......++.+++++.+++.++.+|+++..+..+|.++...++ +++|..+|+++++..|++ 
T Consensus       284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~~P~~-  361 (398)
T PRK10747        284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE-WQEASLAFRAALKQRPDA-  361 (398)
T ss_pred             HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCH-
Confidence            999988877         223345999999999999999999999999999999999999 999999999999999985 


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          393 HVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       393 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      ..+..++.++.++|+.++|..+|++++.+.
T Consensus       362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            556789999999999999999999998764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.76  E-value=5.2e-17  Score=149.56  Aligned_cols=232  Identities=14%  Similarity=0.118  Sum_probs=161.0

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LL------------LRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      +..+.+..|.+++++|++++|+.-|++.+..+|.+.   ++            +......+...|++..|+++..+.+++
T Consensus       105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi  184 (504)
T KOG0624|consen  105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI  184 (504)
T ss_pred             HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence            334455555555555555555555555555555321   11            111222233345555555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013821          262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------  330 (436)
Q Consensus       262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------  330 (436)
                      .|-++..+...+.||...+. ...|+..++.+-++..++.+.++.++.+++..|+.+.++..++++++.           
T Consensus       185 ~~Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y  263 (504)
T KOG0624|consen  185 QPWDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY  263 (504)
T ss_pred             CcchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence            55556666666777666653 777777777777777777777777777777777777777766655544           


Q ss_pred             -------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          331 -------------LPIQSKGDLEGAEEYFSRAILANPGDGEI----MSQYAKLVWELHHDHDKALCYFERAVQASPADSH  393 (436)
Q Consensus       331 -------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~  393 (436)
                                   ......++|.++++..+++++.+|..+.+    ...+..|+..-++ +.+|+..+.++|+.+|+++.
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~d~~dv~  342 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDIDPDDVQ  342 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHhcCchHHH
Confidence                         34456678888888888888888875443    3345566777788 99999999999999999999


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          394 VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       394 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ++...+.+|+-...|++|+..|+++++.+++...+..
T Consensus       343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE  379 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            9999999999999999999999999999998776554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.3e-16  Score=163.78  Aligned_cols=246  Identities=15%  Similarity=0.145  Sum_probs=208.2

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      ++...|...+.-.+ ++.-+..+.+.+.+..++|..|+.+|++++.++|... +....+|.|+.++|+.+.|+..|.+++
T Consensus       148 ~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral  226 (1018)
T KOG2002|consen  148 DADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL  226 (1018)
T ss_pred             HHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence            56666666666666 6677788888889999999999999999999998654 777888999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          260 MADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++|.+..++..||.+-....  ..+..++..+.++...++.++.++..|+.-++..|+++.+..+...++..       
T Consensus       227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~  306 (1018)
T KOG2002|consen  227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK  306 (1018)
T ss_pred             hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence            999999999998887755432  12678999999999999999999999999999999999988888765554       


Q ss_pred             --------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          331 --------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       331 --------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                              +.|..+|+|++|..+|.++++.++++ .-.++.+|.++...|+ ++.|+.+|++++...|++.+....+|.+
T Consensus       307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d-le~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD-LEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch-HHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence                    78888999999999999999999988 7788899999999998 9999999999999999999999999999


Q ss_pred             HHHCC----ChHHHHHHHHHHHhhCCCChhH
Q 013821          402 LWETE----EDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       402 ~~~~g----~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      |...+    ..+.|..+..+++...|.-..+
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a  416 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEA  416 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence            88875    5677888888888887654443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=3.3e-17  Score=160.40  Aligned_cols=211  Identities=13%  Similarity=0.088  Sum_probs=186.3

Q ss_pred             CCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA  258 (436)
Q Consensus       179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a  258 (436)
                      -.+|.+.|..++.-+| ....+|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-
T Consensus       301 L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W  379 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW  379 (579)
T ss_pred             chHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3466778888888888 788999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHhCC-------------------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          259 TMADP-------------------------------------------GDGESWMQYAKLVWELHRDQHRALTYFERAAL  295 (436)
Q Consensus       259 l~~~p-------------------------------------------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~  295 (436)
                      +...|                                           .++++...||.+|+-.+ +|++|+.+|+.||.
T Consensus       380 i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~-efdraiDcf~~AL~  458 (579)
T KOG1125|consen  380 IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG-EFDRAVDCFEAALQ  458 (579)
T ss_pred             HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch-HHHHHHHHHHHHHh
Confidence            66543                                           23778888997666555 69999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013821          296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~  375 (436)
                      ..|+|...|..||                      ..+....+..+|+..|++|+++.|....++++||..++.+|. |.
T Consensus       459 v~Pnd~~lWNRLG----------------------AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-yk  515 (579)
T KOG1125|consen  459 VKPNDYLLWNRLG----------------------ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YK  515 (579)
T ss_pred             cCCchHHHHHHhh----------------------HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HH
Confidence            9999999999999                      888888999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCChHHHHHH
Q 013821          376 KALCYFERAVQASPA----------DSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       376 eA~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      +|.++|-.||.+.+.          +..+|..|-.++.-+++.+-+...
T Consensus       516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            999999999988654          125888888888888888755443

>PLN02789 farnesyltranstransferase

Probab=99.76  E-value=2e-16  Score=151.78  Aligned_cols=229  Identities=13%  Similarity=0.111  Sum_probs=195.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL--YRAEDY  254 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~--~~A~~~  254 (436)
                      ....|...+..++.+.+ ++..+|...|.++..+| ++++++..++++++.+|++..+|..++.++...|+.  ++++.+
T Consensus        52 ~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         52 RSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence            55678888999999999 89999999999999998 689999999999999999999999999999999874  789999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013821          255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ  334 (436)
Q Consensus       255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  334 (436)
                      ++++++.+|++..+|..++.++...+. +++|++++.++|+.+|.+..+|..++.++...+...               .
T Consensus       131 ~~kal~~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~---------------~  194 (320)
T PLN02789        131 TRKILSLDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG---------------G  194 (320)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc---------------c
Confidence            999999999999999999999999985 999999999999999999999999995554332100               0


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----
Q 013821          335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE----  406 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g----  406 (436)
                      .....++++.+..++|..+|++..+|.+++.++..    +++ ..+|+..+.+++...|..+.++..|+.++....    
T Consensus       195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~  273 (320)
T PLN02789        195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA  273 (320)
T ss_pred             ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence            01123578899999999999999999999999988    455 577999999999999999999999999998643    


Q ss_pred             --------------ChHHHHHHHHHHHhhCCC
Q 013821          407 --------------EDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       407 --------------~~~eA~~~~~~al~l~p~  424 (436)
                                    ..++|.+++...-..+|.
T Consensus       274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i  305 (320)
T PLN02789        274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPM  305 (320)
T ss_pred             hhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence                          236677777777555553

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=9e-16  Score=153.86  Aligned_cols=240  Identities=11%  Similarity=0.010  Sum_probs=164.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      ++..|...+.++....+ .....+...|.+....|+++.|..+|+++.+..|++. .+...++.++...|++++|...++
T Consensus        99 ~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             CHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            44455555555555555 4445555556666666666666666666666666553 344445666666666666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------HHhCC
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA--------------------------------------ALAAP  298 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a--------------------------------------l~~~p  298 (436)
                      +.++..|+++.++..++.++...+ |+++|++.+.+.                                      .+..|
T Consensus       178 ~l~~~~P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p  256 (409)
T TIGR00540       178 KLLEMAPRHKEVLKLAEEAYIRSG-AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP  256 (409)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence            666666666666666666666555 355555544443                                      33344


Q ss_pred             ----CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCH--H
Q 013821          299 ----QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDG--E  358 (436)
Q Consensus       299 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~--~  358 (436)
                          +++.++..++..+...|+.++|...+++.++.              ......++.+++++.++++++..|+++  .
T Consensus       257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~  336 (409)
T TIGR00540       257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC  336 (409)
T ss_pred             HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence                46777778888888888888888888877775              122334677888888888888888888  7


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFE--RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .+..+|+++++.|+ +++|.++|+  ++++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus       337 ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       337 INRALGQLLMKHGE-FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            78888888888888 888888888  57777786544 558888888888888888888887654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=1.2e-16  Score=151.70  Aligned_cols=223  Identities=20%  Similarity=0.163  Sum_probs=185.5

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+..++..|-..++.+++ -++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-
T Consensus       470 k~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL  548 (840)
T ss_pred             cchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence            355577788888899988 6888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK  336 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  336 (436)
                      +.-.+--++.++++.++.+|..+. +..+|++++.++..+-|+++.++..|+                      .+|-+.
T Consensus       549 klh~il~nn~evl~qianiye~le-d~aqaie~~~q~~slip~dp~ilskl~----------------------dlydqe  605 (840)
T KOG2003|consen  549 KLHAILLNNAEVLVQIANIYELLE-DPAQAIELLMQANSLIPNDPAILSKLA----------------------DLYDQE  605 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhh-CHHHHHHHHHHhcccCCCCHHHHHHHH----------------------HHhhcc
Confidence            999999999999999999998887 599999999999999999999999999                      666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q 013821          337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSD  416 (436)
Q Consensus       337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  416 (436)
                      |+-.+|..++-...+..|.+.++.-+||..|....- +++|+.+|+++--+.|....-...++.|+.+.|+|..|.+.|+
T Consensus       606 gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf-~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  606 GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF-SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            777777777777777777777777777766666666 6777777777766777666555666667777777777777777


Q ss_pred             HHHhhCCC
Q 013821          417 QFQQVAPI  424 (436)
Q Consensus       417 ~al~l~p~  424 (436)
                      +.....|.
T Consensus       685 ~~hrkfpe  692 (840)
T KOG2003|consen  685 DIHRKFPE  692 (840)
T ss_pred             HHHHhCcc
Confidence            66665554

>TIGR00540 hemY_coli hemY protein

Probab=99.75  E-value=9.7e-16  Score=153.62  Aligned_cols=233  Identities=14%  Similarity=0.047  Sum_probs=198.2

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-ESWMQYAKLVWE  278 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~  278 (436)
                      .....|.+....|+++.|.+.+.++.+..|+....+...|.++..+|++++|..++.++.+..|++. .+...++.++..
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            3345677888899999999999999999998888889999999999999999999999999999975 566777988888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------------------
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------  330 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------  330 (436)
                      .++ +++|...+++.++..|+++.++..++.++...|+++++...+....+.                            
T Consensus       166 ~~~-~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       166 QNE-LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             CCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            875 999999999999999999999999999999999999888877633311                            


Q ss_pred             --------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 013821          331 --------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIM--SQYAKLVWELHHDHDKALCYFE  382 (436)
Q Consensus       331 --------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~d~~eA~~~~~  382 (436)
                                                ..+...|++++|++.++++++..|++....  ..........++ ...+++.++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e  323 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIE  323 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHH
Confidence                                      678888999999999999999999987532  222223333455 899999999


Q ss_pred             HHHHhCCCCH--HHHHHHHHHHHHCCChHHHHHHHH--HHHhhCCCChhHHhhhhh
Q 013821          383 RAVQASPADS--HVLAAYACFLWETEEDEDDSKSSD--QFQQVAPIRQGAVTTANV  434 (436)
Q Consensus       383 ~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--~al~l~p~~~~~~~~a~~  434 (436)
                      ++++.+|+++  .++..+|+++++.|++++|.++|+  ++++..|+.......+.+
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l  379 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA  379 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence            9999999999  889999999999999999999999  577788877665554444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.1e-16  Score=156.07  Aligned_cols=202  Identities=16%  Similarity=0.203  Sum_probs=183.2

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ...+|.-|+.++..+++ .++.+|++.|..+.-.|+.++|+..|.+|-++-|..-.-.+.+|.-|..++++.-|..+|.+
T Consensus       327 k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  327 KYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             CcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence            44567788899999999 89999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C---HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----D---SNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      |+.+.|.++.++..+|.+.+..+ +|.+|+.+|++++..-+.    .   ...+.++|                      
T Consensus       406 A~ai~P~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG----------------------  462 (611)
T KOG1173|consen  406 ALAIAPSDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG----------------------  462 (611)
T ss_pred             HHhcCCCcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHH----------------------
Confidence            99999999999999999988876 599999999999954332    2   34478889                      


Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      .++.+++.+++|+.+|+++|.+.|.++.++..+|.++..+|+ ++.|+++|.++|.+.|++..+-..|+.+...
T Consensus       463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            889999999999999999999999999999999999999999 9999999999999999997776666655443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.74  E-value=3.3e-16  Score=150.05  Aligned_cols=206  Identities=14%  Similarity=0.022  Sum_probs=155.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +...+...+..++.+++ +++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.|++
T Consensus        79 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~  157 (296)
T PRK11189         79 LRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA  157 (296)
T ss_pred             CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34467778999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG  337 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g  337 (436)
                      +++.+|+++.....+ .+.. ..+++++|+..|.+++...+.+  .|. ++.+...+|+...+                .
T Consensus       158 al~~~P~~~~~~~~~-~l~~-~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~----------------~  216 (296)
T PRK11189        158 FYQDDPNDPYRALWL-YLAE-SKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE----------------T  216 (296)
T ss_pred             HHHhCCCCHHHHHHH-HHHH-ccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH----------------H
Confidence            999999998432222 1222 3346999999998877654322  222 34222222221100                0


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETE  406 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g  406 (436)
                      .++.+.+.++.++++.|...++|+++|.++..+|+ +++|+.+|+++++.+| ++++..+.+..+....+
T Consensus       217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~  285 (296)
T PRK11189        217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-LDEAAALFKLALANNVYNFVEHRYALLELALLGQ  285 (296)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence            12222333344456677888999999999999999 9999999999999997 66666665555554433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.73  E-value=7.2e-16  Score=158.49  Aligned_cols=253  Identities=17%  Similarity=0.181  Sum_probs=215.2

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD--SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA  258 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a  258 (436)
                      .+..+|..+-.++- ....-|..-+..+...++  ++.|.+.|...+...|++..+++..|.+.+..|+|..|+.+|+++
T Consensus       112 ~at~~~~~A~ki~m-~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~a  190 (1018)
T KOG2002|consen  112 KATLLFDLADKIDM-YEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKA  190 (1018)
T ss_pred             HHHHHhhHHHHhhc-cCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            56677777777666 344455555555555555  499999999999999999999999999999999999999999999


Q ss_pred             HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---hHHHHHHHHHHHH----
Q 013821          259 TMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD---GEDDKAQEEHIQV----  330 (436)
Q Consensus       259 l~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~----  330 (436)
                      +.++|. -+.....+|.|++.++. .+.|+..|+++++++|.++.++..||.+.....+.   ..+...+.+.+..    
T Consensus       191 l~inp~~~aD~rIgig~Cf~kl~~-~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n  269 (1018)
T KOG2002|consen  191 LRINPACKADVRIGIGHCFWKLGM-SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN  269 (1018)
T ss_pred             HhcCcccCCCccchhhhHHHhccc-hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence            999998 46778889999999986 99999999999999999999999999887776654   4555555555544    


Q ss_pred             --------hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 013821          331 --------LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAY  398 (436)
Q Consensus       331 --------~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~-~~~~~~l  398 (436)
                              ..++-.|+|+.+......++...-.   -++.++.+|+++..+|+ |++|..+|.++++.+|++ ...+..+
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~~~l~~~Gl  348 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD-FEKAFKYYMESLKADNDNFVLPLVGL  348 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCCccccccch
Confidence                    6677789999999999999987633   35679999999999999 999999999999999998 7788999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013821          399 ACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA  436 (436)
Q Consensus       399 a~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~ya  436 (436)
                      |+.++..|+.+.|+.+|++++...|+..+... .+-+||
T Consensus       349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            99999999999999999999999999887665 666654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.70  E-value=2.6e-15  Score=150.36  Aligned_cols=223  Identities=19%  Similarity=0.172  Sum_probs=190.2

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-------  261 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------  261 (436)
                      ...+...++..+...|+|+.|+..++.+++.        .|.-......+|.+|..++++.+|+..|++|+.+       
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3466677999999999999999999999998        5655566667999999999999999999999986       


Q ss_pred             -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--
Q 013821          262 -DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--  330 (436)
Q Consensus       262 -~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--  330 (436)
                       +|.-+.++.+||.+|...|+ +++|..++++|+++.        |.-...+.+++.++...+++++|..++...++.  
T Consensus       278 ~h~~va~~l~nLa~ly~~~GK-f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGK-FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence             44557789999999998886 999999999999874        233456678899999999999999999866665  


Q ss_pred             ------------------hHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          331 ------------------LPIQSKGDLEGAEEYFSRAILAN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       331 ------------------~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                                        .+|..+|+|++|.++|++|+.+.        +.....+.++|..+.++++ +.+|...|.++
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~  435 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEA  435 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence                              88999999999999999999884        3346788999999999988 99999999998


Q ss_pred             HHhC----C---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          385 VQAS----P---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       385 l~~~----p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      +.+.    |   +-...+.+|+.+|..+|++++|+++..+++..
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            7653    3   33478899999999999999999999998854

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.70  E-value=2.3e-15  Score=138.79  Aligned_cols=217  Identities=13%  Similarity=0.087  Sum_probs=189.5

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      .-...+|.-++..|++.+|+..|..+++.+|++..+++..|.+|..+|+-..|+..+.+++++.|+...+....|.++.+
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            34455677777779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      +|. +++|+..|+++++-+|.+...   .-.++.+...       ..... .+  ..+...|++..|+++....|++.|=
T Consensus       119 ~Ge-le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~-------~~l~~-ql--~s~~~~GD~~~ai~~i~~llEi~~W  187 (504)
T KOG0624|consen  119 QGE-LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH-------WVLVQ-QL--KSASGSGDCQNAIEMITHLLEIQPW  187 (504)
T ss_pred             ccc-HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------HHHHH-HH--HHHhcCCchhhHHHHHHHHHhcCcc
Confidence            986 999999999999999965433   3333311111       00000 00  4566789999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ++..+...+.||...|+ ...|+..++.+-.+..++.+.++.++.+++..|+.+.++...+.+|.++|++..
T Consensus       188 da~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  188 DASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             hhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence            99999999999999999 999999999999999999999999999999999999999999999999998754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=1.5e-14  Score=154.10  Aligned_cols=248  Identities=13%  Similarity=0.018  Sum_probs=186.5

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +..+|..++.++..-.+ ........+|.++...|++++|+++|+++++.+|+++.++..++.++...++.++|++.+++
T Consensus        83 ~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~  161 (822)
T PRK14574         83 RDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE  161 (822)
T ss_pred             CcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            45578888888883333 34455566688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH---------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI---------  328 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---------  328 (436)
                      +...+|.+... ..++.++...++ ..+|++.|+++++.+|++..++..+..++...|-...|.+++.++.         
T Consensus       162 l~~~dp~~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~  239 (822)
T PRK14574        162 LAERDPTVQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR  239 (822)
T ss_pred             hcccCcchHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence            99999996655 556666655554 7679999999999999999999999999999988777776665110         


Q ss_pred             ---------------------------------------HH---------------------------------------
Q 013821          329 ---------------------------------------QV---------------------------------------  330 (436)
Q Consensus       329 ---------------------------------------~~---------------------------------------  330 (436)
                                                             ..                                       
T Consensus       240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~  319 (822)
T PRK14574        240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME  319 (822)
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence                                                   00                                       


Q ss_pred             -------------------------------------------------------hHHHHcCCHHHHHHHHHHHHHhCC-
Q 013821          331 -------------------------------------------------------LPIQSKGDLEGAEEYFSRAILANP-  354 (436)
Q Consensus       331 -------------------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p-  354 (436)
                                                                             ..+...++|++|..++++..+..| 
T Consensus       320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~  399 (822)
T PRK14574        320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY  399 (822)
T ss_pred             hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence                                                                   223334455555555555544222 


Q ss_pred             --------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          355 --------------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       355 --------------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                                    +..++...++.++...|+ +.+|++.+++.+...|.++.++..+|.++...|.+.+|.+.++.++.
T Consensus       400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             EEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence                          234455666777777777 77777777777777777777777777777777777777777777777


Q ss_pred             hCCCChhHH
Q 013821          421 VAPIRQGAV  429 (436)
Q Consensus       421 l~p~~~~~~  429 (436)
                      ++|......
T Consensus       479 l~P~~~~~~  487 (822)
T PRK14574        479 LAPRSLILE  487 (822)
T ss_pred             hCCccHHHH
Confidence            777654433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=4.8e-15  Score=137.29  Aligned_cols=179  Identities=15%  Similarity=0.062  Sum_probs=140.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---  302 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---  302 (436)
                      +..+..++.+|..+...|++++|+..|++++..+|.++   .+++.+|.++...++ +++|+..|+++++..|+++.   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCchHH
Confidence            44567788888888888888888888888888877765   567788888777764 88888888888888887665   


Q ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHH
Q 013821          303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM-----------------SQYAK  365 (436)
Q Consensus       303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~  365 (436)
                      +++.+|.++.....              .++...|++++|++.|++++..+|++..++                 ..+|.
T Consensus       109 a~~~~g~~~~~~~~--------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~  174 (235)
T TIGR03302       109 AYYLRGLSNYNQID--------------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVAR  174 (235)
T ss_pred             HHHHHHHHHHHhcc--------------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677744433210              223344889999999999999999986543                 36788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          366 LVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       366 ~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      +++..|+ +.+|+..|++++...|+.   ..++..+|.++..+|++++|+.+++......|
T Consensus       175 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       175 FYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8899999 999999999999997764   58999999999999999999999888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.68  E-value=8.3e-15  Score=135.69  Aligned_cols=187  Identities=14%  Similarity=0.082  Sum_probs=152.8

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWM  270 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  270 (436)
                      ....+..+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|+++++..|+++.   +++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            446778888888889999999999999999999876   68899999999999999999999999999998765   789


Q ss_pred             HHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821          271 QYAKLVWEL--------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       271 ~la~~~~~~--------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                      .+|.++...        + ++++|++.|+++++.+|++..++..+..+....+.....    . .....++...|++.+|
T Consensus       112 ~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~----~-~~~a~~~~~~g~~~~A  185 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK----E-LYVARFYLKRGAYVAA  185 (235)
T ss_pred             HHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHcCChHHH
Confidence            999998875        4 489999999999999999877664443322211111000    0 0001778899999999


Q ss_pred             HHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          343 EEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       343 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      +..|++++...|+.   +.+++.+|.++..+|+ +++|..+++......|+
T Consensus       186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       186 INRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence            99999999997764   6899999999999999 99999998887766553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=1.6e-15  Score=129.32  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          218 EEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA  297 (436)
Q Consensus       218 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~  297 (436)
                      ..+|+++++.+|++   +..+|.++...|++++|+.+|++++..+|.+..+|..+|.++...++ +++|+..|+++++++
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~l~   88 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence            34566666666543   44556666666666666666666666666666666666666666553 666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE  369 (436)
Q Consensus       298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  369 (436)
                      |+++.+++++|                      .++...|++++|+..|++++++.|+++..+.+++.+...
T Consensus        89 p~~~~a~~~lg----------------------~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         89 ASHPEPVYQTG----------------------VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCCcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            66666666666                      555566666666666666666666666666666655543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.68  E-value=3.2e-14  Score=142.05  Aligned_cols=227  Identities=12%  Similarity=0.069  Sum_probs=185.2

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY-AQLLQKKGDLYRAEDYYNHATMADPGDGESW-MQYAKLVW  277 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~  277 (436)
                      .....|.+....|++++|++.+.+..+..+ ++..++.+ +.+....|+++.|..+|.++.+.+|++.... ...+.++.
T Consensus        86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l  164 (398)
T PRK10747         86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL  164 (398)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            334566777778999999988887666543 34444444 6666999999999999999999999986444 34477777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------------------  330 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------  330 (436)
                      ..+ ++++|+..++++++..|+++.++..++.++...|+++++..++....+.                           
T Consensus       165 ~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~  243 (398)
T PRK10747        165 ARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ  243 (398)
T ss_pred             HCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776 5999999999999999999999999999999999999998655522210                           


Q ss_pred             ---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          331 ---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       331 ---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                                                 ..+...|+.++|...++++++. +.++.....++.+  ..++ .+++++.+++
T Consensus       244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~-~~~al~~~e~  319 (398)
T PRK10747        244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN-PEQLEKVLRQ  319 (398)
T ss_pred             CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC-hHHHHHHHHH
Confidence                                       6677889999999999999995 4456655555554  3366 9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhh
Q 013821          384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTA  432 (436)
Q Consensus       384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~a  432 (436)
                      .++.+|+++..+..+|.++...+++++|.++|++++++.|+...-...+
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La  368 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLA  368 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999876644433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.7e-16  Score=147.29  Aligned_cols=252  Identities=12%  Similarity=0.020  Sum_probs=210.9

Q ss_pred             cccchhhhcCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 013821          169 LNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL  248 (436)
Q Consensus       169 ~~~~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~  248 (436)
                      .+.+..+ ..+.++...+..++.+.+ ++...|.+.+.+++..|++++|.-.+++.++++|.....+...++++..+++.
T Consensus        56 gn~~yk~-k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~  133 (486)
T KOG0550|consen   56 GNAFYKQ-KTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL  133 (486)
T ss_pred             cchHHHH-hhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence            3444333 378889999999999999 78999999999999999999999999999999999888888888888888888


Q ss_pred             HHHHHHHHHHH------------Hh------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          249 YRAEDYYNHAT------------MA------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       249 ~~A~~~~~~al------------~~------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      .+|.+.++..-            .+      .|....+....+.|+...+ ++++|...--..+++++.+.++++..|.+
T Consensus       134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~-~~~~a~~ea~~ilkld~~n~~al~vrg~~  212 (486)
T KOG0550|consen  134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG-DYDEAQSEAIDILKLDATNAEALYVRGLC  212 (486)
T ss_pred             HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc-cchhHHHHHHHHHhcccchhHHHHhcccc
Confidence            87776655221            00      1223345555666766666 48888888888888888888888888888


Q ss_pred             HHHccCchHHHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 013821          311 LWEMEDDGEDDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQ  362 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~  362 (436)
                      ++..++.+.++..+++.+..                        .-.++.|+|.+|.++|..+|.++|++    +..|.+
T Consensus       213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            88888888888888755544                        66778999999999999999999985    567899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      ++.+...+|+ ..+|+..++.++.++|...+++...|.++..++++++|++.|+++++....
T Consensus       293 ra~v~~rLgr-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  293 RALVNIRLGR-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             hHhhhcccCC-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999 999999999999999999999999999999999999999999999998654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.68  E-value=9.9e-15  Score=144.34  Aligned_cols=244  Identities=18%  Similarity=0.186  Sum_probs=215.4

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+++.+..++.++....+  ....|+.-.++..-+++.++|+.+++++++..|+....|+.+|+++.++++.+.|.+.|.
T Consensus       632 ~e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~  709 (913)
T KOG0495|consen  632 DELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL  709 (913)
T ss_pred             ccHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            466678888888887554  467899889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------  330 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------  330 (436)
                      ..++..|.....|..++.+-...++ .-+|...++++.-.+|++...|.....+..+.|+.+.|...+.++++.      
T Consensus       710 ~G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~  788 (913)
T KOG0495|consen  710 QGTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL  788 (913)
T ss_pred             hccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence            9999999999999999999888875 999999999999999999999999999999999999999888888876      


Q ss_pred             ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                            ++.-+-++    ...+..||+....++.++..+|.+++...+ +++|.++|.+++.++|+++++|..+-.++..
T Consensus       789 LWaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k-~~kar~Wf~Ravk~d~d~GD~wa~fykfel~  863 (913)
T KOG0495|consen  789 LWAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKK-IEKAREWFERAVKKDPDNGDAWAWFYKFELR  863 (913)
T ss_pred             hHHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence                  11112222    233445666677889999999999999999 9999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhhCCCChhH
Q 013821          405 TEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       405 ~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      .|..++-.++|.++..-.|.|...
T Consensus       864 hG~eed~kev~~~c~~~EP~hG~~  887 (913)
T KOG0495|consen  864 HGTEEDQKEVLKKCETAEPTHGEL  887 (913)
T ss_pred             hCCHHHHHHHHHHHhccCCCCCcH
Confidence            999999999999999999988763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.2e-14  Score=137.12  Aligned_cols=232  Identities=15%  Similarity=0.142  Sum_probs=188.3

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH----------------------------------HHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY----------------------------------AQL  241 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l----------------------------------a~~  241 (436)
                      .+..-++.+|.+++..|++.+|+..|+++.-++|.+....-.+                                  +..
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~  309 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL  309 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence            5667778888999999999999999999988888765443333                                  444


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      .+..+++..|+.+-+++|..+|.+..++...|.++...++ .++|+-.|+.|..+.|.+.+.+..+..+|...|.+.+|.
T Consensus       310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER-HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            4555566677777788888888888888888888888776 888888888888888888888888888888888888877


Q ss_pred             HHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          322 KAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       322 ~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      -.....++.              .++....--++|.+.++++|+++|....+...+|.++...|. +..++.++++++..
T Consensus       389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~-~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP-TKDIIKLLEKHLII  467 (564)
T ss_pred             HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc-cchHHHHHHHHHhh
Confidence            777665554              122223345789999999999999999999999999999999 99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      .|+ ...+..||.++...+.+++|..+|..++.++|+...+..
T Consensus       468 ~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~  509 (564)
T KOG1174|consen  468 FPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR  509 (564)
T ss_pred             ccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence            998 457889999999999999999999999999998776543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.67  E-value=2.7e-14  Score=153.98  Aligned_cols=146  Identities=12%  Similarity=0.011  Sum_probs=133.9

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .++.++...+.....+++ ....++..+|.++...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++
T Consensus        29 g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~  107 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK  107 (765)
T ss_pred             CCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            467788888888877777 6778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      ++++..|+++. +..+|.++...++ +++|+..|++++++.|++..++..++.++...+..++|+..++
T Consensus       108 ~~l~~~P~~~~-~~~la~~l~~~g~-~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049        108 QLVSGAPDKAN-LLALAYVYKRAGR-HWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID  174 (765)
T ss_pred             HHHHhCCCCHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            99999999999 9999999998875 9999999999999999999999999999988888776665554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=2.4e-15  Score=128.14  Aligned_cols=127  Identities=17%  Similarity=0.109  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013821          252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL  331 (436)
Q Consensus       252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  331 (436)
                      ..+|+++++++|++   +..+|.++...|+ +++|+.+|++++.++|.+..++..+|                      .
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~   66 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALA----------------------G   66 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------H
Confidence            46789999999885   5678888888875 99999999999999999999999999                      8


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                      ++...|++++|+..|++++.++|+++.+++++|.++..+|+ +++|+..|++++.+.|+++..+..++.+...+
T Consensus        67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999 99999999999999999999998888776543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4.7e-14  Score=129.44  Aligned_cols=227  Identities=15%  Similarity=0.093  Sum_probs=147.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAE  252 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~  252 (436)
                      +|+.|.-.|..-+..++ ....+..-+|+++...|+.+.|+.+-+..+. .|+.+     .++..+|.-|...|-++.|.
T Consensus        50 Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          50 QPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             CcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            55555555555555555 4555555666666666666666655444333 23221     44555666666666666666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821          253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP  332 (436)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  332 (436)
                      ..|........--..++..|..+|.... +|++|++.-++..++.++...+  .++.+|+++.               ..
T Consensus       128 ~~f~~L~de~efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~--eIAqfyCELA---------------q~  189 (389)
T COG2956         128 DIFNQLVDEGEFAEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRV--EIAQFYCELA---------------QQ  189 (389)
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchh--HHHHHHHHHH---------------HH
Confidence            6665555444444555555555554443 4666666666666665553322  1222222221               55


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChHHH
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLAAYACFLWETEEDEDD  411 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA  411 (436)
                      +....++++|+..+++|++.+|++..+-..+|.+....|+ |+.|++.++.+++.+|+.. .+.-.|..+|.++|+.++.
T Consensus       190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            5566788888999999999999888888889999988888 9999999999988888864 6778888889999999888


Q ss_pred             HHHHHHHHhhCCCC
Q 013821          412 SKSSDQFQQVAPIR  425 (436)
Q Consensus       412 ~~~~~~al~l~p~~  425 (436)
                      +..+.++.+..+..
T Consensus       269 ~~fL~~~~~~~~g~  282 (389)
T COG2956         269 LNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHccCCc
Confidence            88888888776543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.64  E-value=4.9e-14  Score=138.69  Aligned_cols=204  Identities=16%  Similarity=0.075  Sum_probs=169.7

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY  272 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  272 (436)
                      +++.++..+|.++...|+.+++...+.++.+..|.+   .......+.++...|++++|...++++++.+|.+..++.. 
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-   82 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-   82 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence            667788888888888999999999999999887754   4667788999999999999999999999999999987775 


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013821          273 AKLVWELHR---DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA  349 (436)
Q Consensus       273 a~~~~~~~~---d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  349 (436)
                      +..++..+.   ....+.+.+.......|.....+..++                      .++..+|++++|+..++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a----------------------~~~~~~G~~~~A~~~~~~a  140 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA----------------------FGLEEAGQYDRAEEAARRA  140 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHH
Confidence            545444442   234444444443345566667777778                      8888999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       350 l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      ++++|+++.++..+|.+++..|+ +++|+.++++++...|.++    ..+..++.++...|++++|+..|++++...|
T Consensus       141 l~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         141 LELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            99999999999999999999999 9999999999999887433    3566899999999999999999999987665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=2.4e-15  Score=137.82  Aligned_cols=220  Identities=15%  Similarity=0.101  Sum_probs=183.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      -|.+++-.++..+.--+  .++.+..+..+|.+..+...|+..|.+.++..|.+...+...+.++..++++++|.++|+.
T Consensus       238 m~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~  315 (478)
T KOG1129|consen  238 MPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL  315 (478)
T ss_pred             ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence            34455555655554333  3567788888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++++|.+.++...+|.-|+.-++ .+-|+.+|++.+++.-.+++.+.++|.|....++++-++..+.+++..       
T Consensus       316 vlk~~~~nvEaiAcia~~yfY~~~-PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a  394 (478)
T KOG1129|consen  316 VLKLHPINVEAIACIAVGYFYDNN-PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA  394 (478)
T ss_pred             HHhcCCccceeeeeeeeccccCCC-hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence            888888888888888877777765 888888888888888888888888888888888888888777766655       


Q ss_pred             --------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          331 --------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       331 --------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                              .+....||+.-|..+|+-+|..++++.+++++||.+-.+.|+ .++|..++..|-...|+-.+..++++.+
T Consensus       395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-ILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-hHHHHHHHHHhhhhCccccccccceeEE
Confidence                    445567999999999999999999999999999999999999 9999999999999999988877777644

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.62  E-value=9.2e-14  Score=140.19  Aligned_cols=210  Identities=18%  Similarity=0.203  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQHRALTYFER  292 (436)
Q Consensus       214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~  292 (436)
                      ..+++..++++++.+|.|+.+.++++.-|..+++.+.|.++.++++++++. ++.+|..++.++...++ +.+|+...+.
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr-~~~Al~vvd~  538 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR-LKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-hHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999655 78999999999888875 9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHH-------------------------------------------
Q 013821          293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ-------------------------------------------  329 (436)
Q Consensus       293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------------------  329 (436)
                      ++.-.|+|.........+....++.++++..+...+.                                           
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            9998888665555555555555555555444431110                                           


Q ss_pred             ------------------------------------------------------------H------------hHHHHcC
Q 013821          330 ------------------------------------------------------------V------------LPIQSKG  337 (436)
Q Consensus       330 ------------------------------------------------------------~------------~~~~~~g  337 (436)
                                                                                  .            .++...|
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~  698 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG  698 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence                                                                        0            5666778


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC--YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      ++.+|.+.|..|+.++|+++.....+|.++.+.|+ ..-|..  ++..+++++|.++++|+.+|.++.++|+.++|.++|
T Consensus       699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            99999999999999999999999999999999998 777777  999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCC
Q 013821          416 DQFQQVAPIR  425 (436)
Q Consensus       416 ~~al~l~p~~  425 (436)
                      .-++++.+..
T Consensus       778 ~aa~qLe~S~  787 (799)
T KOG4162|consen  778 QAALQLEESN  787 (799)
T ss_pred             HHHHhhccCC
Confidence            9999987543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=4.8e-14  Score=132.98  Aligned_cols=215  Identities=16%  Similarity=0.191  Sum_probs=180.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH------------------
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA------------------  273 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la------------------  273 (436)
                      .-+.-+..++-.-...-|++...+..+|.+++..|++.+|+..|+++.-++|......-.+|                  
T Consensus       212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~  291 (564)
T KOG1174|consen  212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY  291 (564)
T ss_pred             cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence            33445555666667788999999999999999999999999999999999998744433333                  


Q ss_pred             ----------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          274 ----------------KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       274 ----------------~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                                      .++|..+ ++..|+.+-+++|+.+|.+..++...|.++..+++.++|.-+++.+...       
T Consensus       292 Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~  370 (564)
T KOG1174|consen  292 LFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI  370 (564)
T ss_pred             HHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence                            3334443 4788999999999999999999999999999999999999888865543       


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA-KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                           .+|...|++.+|...-+.+++.-|.++.++..+| .++...-.--++|.+.+++++.+.|....+...++.++..
T Consensus       371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~  450 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV  450 (564)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence                 7888999999999999999999999999999987 5554322214899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhhCCCChh
Q 013821          405 TEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       405 ~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      .|.+++++..+++.+...|+-.-
T Consensus       451 Eg~~~D~i~LLe~~L~~~~D~~L  473 (564)
T KOG1174|consen  451 EGPTKDIIKLLEKHLIIFPDVNL  473 (564)
T ss_pred             hCccchHHHHHHHHHhhccccHH
Confidence            99999999999999999887544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=4.4e-14  Score=126.87  Aligned_cols=124  Identities=12%  Similarity=0.149  Sum_probs=95.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821          245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ  324 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  324 (436)
                      .++.++++..++++++.+|++...|..+|.++...++ +++|+..|+++++++|++..++..+|                
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~~~~~~~lA----------------  114 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGENAELYAALA----------------  114 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence            5666777778888888888888888888877777764 88888888888888888888888877                


Q ss_pred             HHHHHHhH-HHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          325 EEHIQVLP-IQSKGD--LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       325 ~~~~~~~~-~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                            .+ +...|+  +++|...++++++.+|++..+++++|.++...|+ +++|+.+|++++++.|.+.
T Consensus       115 ------~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        115 ------TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD-YAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             ------HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCc
Confidence                  43 345555  4788888888888888888888888888888887 8888888888888777654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.60  E-value=9.2e-14  Score=124.80  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      +.++++..++++++.+|++...|..+|                      .+|...|++++|+..|+++++++|+++.++.
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg----------------------~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~  111 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNSEQWALLG----------------------EYYLWRNDYDNALLAYRQALQLRGENAELYA  111 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            467777777777777777777777777                      7777777777777777777777777777777


Q ss_pred             HHHHHH-HHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          362 QYAKLV-WELHHD-HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       362 ~la~~~-~~~g~d-~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      .+|.++ ...|+- +++|+..++++++.+|+++.++..+|..+.+.|++++|+..+++++++.|.
T Consensus       112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        112 ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            777765 444441 377777777777777777777777777777777777777777777777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.60  E-value=2.9e-13  Score=144.41  Aligned_cols=197  Identities=13%  Similarity=0.091  Sum_probs=169.7

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ..+......+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........+|.+
T Consensus        32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            56677788888999999999999999999999999965545899999999999999999999994444455555556878


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      +...+ ++++|++.|+++++.+|+++.++..++                      .++...++.++|++.+++++..+|.
T Consensus       112 y~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa----------------------~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        112 YRNEK-RWDQALALWQSSLKKDPTNPDLISGMI----------------------MTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHH----------------------HHHhhcCCHHHHHHHHHHhcccCcc
Confidence            88877 599999999999999999999998888                      8888899999999999999999998


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      +... ..++.++..+++ ..+|+..++++++.+|++..++..+..++.+.|-...|.+..++
T Consensus       169 ~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        169 VQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             hHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            5554 556666666677 77799999999999999999999999999999999988766554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.6e-13  Score=132.29  Aligned_cols=109  Identities=12%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      ...|+..+..|+++.|+.+|..+|.++|.+...|.+...+|..+|+|++|+..-.+.++++|.-+..|..+|..+..+|+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence            34678888999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                       |++|+..|.+.|+.+|++..++..++.++
T Consensus        86 -~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   86 -YEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             -HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence             99999999999999999999998888776

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.59  E-value=8.7e-13  Score=130.76  Aligned_cols=242  Identities=14%  Similarity=0.122  Sum_probs=201.5

Q ss_pred             HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD  262 (436)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  262 (436)
                      ..+--.|+++...+.-..|+..+..+.+.+-++-|+..|..+++.+|....+|...+.+-..-|..+.-..++++++...
T Consensus       501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~  580 (913)
T KOG0495|consen  501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC  580 (913)
T ss_pred             HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            34445555665544558899999999999999999999999999999999999999888888999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------h
Q 013821          263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------L  331 (436)
Q Consensus       263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~  331 (436)
                      |.....|..++.-++..| |...|...+.++++.+|++.++|+.-..+......++.|..++.++...           .
T Consensus       581 pkae~lwlM~ake~w~ag-dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~  659 (913)
T KOG0495|consen  581 PKAEILWLMYAKEKWKAG-DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSAN  659 (913)
T ss_pred             CcchhHHHHHHHHHHhcC-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhH
Confidence            999999999999888886 6999999999999999999999988888888888888888888865544           5


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD  411 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  411 (436)
                      +...+++.++|+.+++++|+..|+....|..+|+++.++++ .+.|...|...+...|.....|..++.+-.+.|..-.|
T Consensus       660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~-ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA  738 (913)
T KOG0495|consen  660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN-IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA  738 (913)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH-HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence            55567888888888888888888888888888888888888 88888888888877777777777777777777777777


Q ss_pred             HHHHHHHHhhCCCCh
Q 013821          412 SKSSDQFQQVAPIRQ  426 (436)
Q Consensus       412 ~~~~~~al~l~p~~~  426 (436)
                      ...+.++.-.+|+..
T Consensus       739 R~ildrarlkNPk~~  753 (913)
T KOG0495|consen  739 RSILDRARLKNPKNA  753 (913)
T ss_pred             HHHHHHHHhcCCCcc
Confidence            777777777776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.59  E-value=1.5e-13  Score=144.07  Aligned_cols=158  Identities=14%  Similarity=0.048  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA  294 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al  294 (436)
                      .+++.-+.......|++++++++||.+....|++++|..++++++++.|++..++..++.++.+.++ +++|+..+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l  147 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYF  147 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHh
Confidence            4455555556667899999999999999999999999999999999999999999999999999987 999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013821          295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH  374 (436)
Q Consensus       295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~  374 (436)
                      ..+|++..+++.+|                      .++.+.|++++|+.+|++++..+|+++.++..+|.++..+|+ .
T Consensus       148 ~~~p~~~~~~~~~a----------------------~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~  204 (694)
T PRK15179        148 SGGSSSAREILLEA----------------------KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-L  204 (694)
T ss_pred             hcCCCCHHHHHHHH----------------------HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-H
Confidence            99999999999999                      888899999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 013821          375 DKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       375 ~eA~~~~~~al~~~p~~~~~~~  396 (436)
                      ++|...|+++++...+-...+.
T Consensus       205 ~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        205 WRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             HHHHHHHHHHHHhhCcchHHHH
Confidence            9999999999998766555443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.59  E-value=2.1e-13  Score=136.79  Aligned_cols=193  Identities=18%  Similarity=0.178  Sum_probs=167.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 013821          228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--  297 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--  297 (436)
                      .|.-..+...++..|..+|+|++|+..+++++..        .|.-......+|.+|..+++ +.+|+..|++|+.+.  
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREE  273 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence            4656677888999999999999999999999998        55556666679999999986 999999999999873  


Q ss_pred             ------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHHcCCHHHHHHHHHHHHH
Q 013821          298 ------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       298 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~g~~~~A~~~~~~al~  351 (436)
                            |.-..++.+|+.+|...|++++|...++.++..                    .++..++++++|+.+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                  445677899999999999999999999977766                    778889999999999999998


Q ss_pred             hC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          352 AN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       352 ~~--------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      +.        +.-+..+.+||.+|..+|+ +.+|.++|++|+++.        +.....+.++|..+.+.+++.+|.+.|
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~  432 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF  432 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence            72        2346789999999999999 999999999999874        334578899999999999999999999


Q ss_pred             HHHHhhC
Q 013821          416 DQFQQVA  422 (436)
Q Consensus       416 ~~al~l~  422 (436)
                      .++..+.
T Consensus       433 ~~~~~i~  439 (508)
T KOG1840|consen  433 EEAKDIM  439 (508)
T ss_pred             HHHHHHH
Confidence            9988764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.58  E-value=7.2e-13  Score=135.89  Aligned_cols=237  Identities=18%  Similarity=0.201  Sum_probs=193.0

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+.++|...+...+..++ .+..+|.-||.++.++|+.+++...+-.|-.++|.+.+.|..++....++|++.+|+-+|.
T Consensus       153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            456678888888889999 6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCchHHHHHHH------
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-----SNILAAYACFLWEMEDDGEDDKAQE------  325 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~------  325 (436)
                      +|++.+|.+....+..+.+|.++| ++..|...|.+++.+.|..     .+.....+..+...++.+.|.+.++      
T Consensus       232 rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~  310 (895)
T KOG2076|consen  232 RAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE  310 (895)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence            999999999999999999988887 5999999999999999821     1111222333333333333333332      


Q ss_pred             --------------------------------------------------------------------------------
Q 013821          326 --------------------------------------------------------------------------------  325 (436)
Q Consensus       326 --------------------------------------------------------------------------------  325 (436)
                                                                                                      
T Consensus       311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L  390 (895)
T KOG2076|consen  311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL  390 (895)
T ss_pred             cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence                                                                                            


Q ss_pred             -------------------------------HHHHH------------------------------hHHHHcCCHHHHHH
Q 013821          326 -------------------------------EHIQV------------------------------LPIQSKGDLEGAEE  344 (436)
Q Consensus       326 -------------------------------~~~~~------------------------------~~~~~~g~~~~A~~  344 (436)
                                                     +++..                              .+|..+|.+++|++
T Consensus       391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e  470 (895)
T KOG2076|consen  391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE  470 (895)
T ss_pred             cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence                                           11111                              89999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCChHHHHHHH
Q 013821          345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---------SHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       345 ~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      +|++++...|++.++...|+.++.++|+ .++|.+.++....-++.+         ..+...+..++.+.|+.++=+..-
T Consensus       471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~  549 (895)
T KOG2076|consen  471 FYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA  549 (895)
T ss_pred             HHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999999999999999999 999999998866333222         256678888999999988855443


Q ss_pred             H
Q 013821          416 D  416 (436)
Q Consensus       416 ~  416 (436)
                      .
T Consensus       550 ~  550 (895)
T KOG2076|consen  550 S  550 (895)
T ss_pred             H
Confidence            3

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.57  E-value=3.9e-13  Score=120.75  Aligned_cols=179  Identities=17%  Similarity=0.123  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA  293 (436)
Q Consensus       214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a  293 (436)
                      ...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+..++..+|...+..++ |.+|+..++++
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rkA  126 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN-FGEAVSVLRKA  126 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Confidence            344666677777788888888 8888888899988888888888888888888888888888888875 89999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 013821          294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD  373 (436)
Q Consensus       294 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d  373 (436)
                      ..+.|++..+|..+|                      .+|.+.|+++.|...|.+++++.|.++.+..|+|..+.-.|+ 
T Consensus       127 ~~l~p~d~~~~~~lg----------------------aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd-  183 (257)
T COG5010         127 ARLAPTDWEAWNLLG----------------------AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD-  183 (257)
T ss_pred             hccCCCChhhhhHHH----------------------HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC-
Confidence            999999999999998                      888888999999999999999999999999999988888888 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      ++.|..++..+....+.+..+..+++.+...+|++++|.+.-.+
T Consensus       184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            89999999988888888888888999999899998888776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.56  E-value=4.9e-13  Score=140.25  Aligned_cols=143  Identities=13%  Similarity=0.029  Sum_probs=136.4

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821          256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS  335 (436)
Q Consensus       256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  335 (436)
                      .......|.++.+++.||.+....++ +++|+..++.++++.|++..++..++                      .++.+
T Consensus        76 ~~~~~~~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~~~a~~~~a----------------------~~L~~  132 (694)
T PRK15179         76 LDYVRRYPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDSSEAFILML----------------------RGVKR  132 (694)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCcHHHHHHHH----------------------HHHHH
Confidence            33345578999999999999999986 99999999999999999999999999                      89999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      .+++++|+..+++++..+|+++.+++.+|.++.++|+ +++|+.+|++++..+|++..++..+|.++...|+.++|...|
T Consensus       133 ~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        133 QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 013821          416 DQFQQVA  422 (436)
Q Consensus       416 ~~al~l~  422 (436)
                      +++++..
T Consensus       212 ~~a~~~~  218 (694)
T PRK15179        212 QAGLDAI  218 (694)
T ss_pred             HHHHHhh
Confidence            9999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=6.4e-12  Score=115.58  Aligned_cols=227  Identities=16%  Similarity=0.117  Sum_probs=184.3

Q ss_pred             hcCCCChHHHHHhhcCCCCCCch----------------------hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH
Q 013821          176 IERPVSPPMYLAMGLGISVPGFD----------------------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL  233 (436)
Q Consensus       176 ~~~p~~a~~~~~~~~~~~~~~~~----------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  233 (436)
                      +.+|..-++.+..|.-++.++..                      -+...+|.-|+..|-++.|+..|...++...--..
T Consensus        63 ~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~  142 (389)
T COG2956          63 QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEG  142 (389)
T ss_pred             hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHH
Confidence            35777788888877766665332                      45667889999999999999999999887666668


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      ++..+..+|....+|++|++..++..++.+..     +..+..+|..+.... +++.|+..+.+|++.+|+...+-..+|
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhCccceehhhhhh
Confidence            99999999999999999999999999998875     456777887766665 599999999999999999999999999


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                                            .++...|+|++|++.++.+++.+|+. +++...|..+|.++|+ .++.+..+.++.+.
T Consensus       222 ----------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~~~~fL~~~~~~  278 (389)
T COG2956         222 ----------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAEGLNFLRRAMET  278 (389)
T ss_pred             ----------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc
Confidence                                  77788888888888888888888875 5677788888888888 88888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      .+. +.+...++.......-.+.|..++.+-+...|...+
T Consensus       279 ~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g  317 (389)
T COG2956         279 NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG  317 (389)
T ss_pred             cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence            776 445566666666666677777777777777776444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.55  E-value=4.4e-13  Score=141.70  Aligned_cols=220  Identities=13%  Similarity=0.070  Sum_probs=185.9

Q ss_pred             CCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----
Q 013821          191 GISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG----  266 (436)
Q Consensus       191 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----  266 (436)
                      .+++ ....+|..+...+...+++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|...  +++...+.+.    
T Consensus        25 ~~~p-~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         25 NYSL-SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             cCCc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            4445 67789999999999999999999999999999999999999999999999998877666  6666655554    


Q ss_pred             ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013821          267 ---------------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL  331 (436)
Q Consensus       267 ---------------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  331 (436)
                                     .+++.+|.||-.+++ +++|...|+++++++|+++.++.++|..+... +.++|..++.+++  .
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~-~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV--~  177 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNE-NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI--Y  177 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH--H
Confidence                           899999999999986 99999999999999999999999999999999 9999999999999  4


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--------HH------------HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQ--------YA------------KLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------la------------~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                      .+...++|.++.++..+.+..+|++.+.+..        ++            ..|...++ |++++..++.+|+.+|.+
T Consensus       178 ~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~-~~~~i~iLK~iL~~~~~n  256 (906)
T PRK14720        178 RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED-WDEVIYILKKILEHDNKN  256 (906)
T ss_pred             HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh-hhHHHHHHHHHHhcCCcc
Confidence            5777779999999999999999987665322        22            34445555 999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          392 SHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      ..+...++.+|.  +.|.. ...++..+.+
T Consensus       257 ~~a~~~l~~~y~--~kY~~-~~~~ee~l~~  283 (906)
T PRK14720        257 NKAREELIRFYK--EKYKD-HSLLEDYLKM  283 (906)
T ss_pred             hhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence            999999999987  33333 4444444444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=9.4e-14  Score=131.20  Aligned_cols=231  Identities=14%  Similarity=0.082  Sum_probs=192.3

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      ...|+.+++..+|.+|+..|..+++..|+++..|.+.+.++...|++++|...+++.+.++|.........+.++..++.
T Consensus        53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence            34455677779999999999999999999999999999999999999999999999999999999988888888877763


Q ss_pred             CHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------h
Q 013821          282 DQHRALTYFERAA------------LAA------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------L  331 (436)
Q Consensus       282 d~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~  331 (436)
                       ..+|.+.|+..-            .+-      |.-..+....+.++...+++++|...--..++.            .
T Consensus       133 -~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~  211 (486)
T KOG0550|consen  133 -LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL  211 (486)
T ss_pred             -HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence             666665554211            111      222344566788999999999988877655554            7


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDG------------EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVL  395 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~  395 (436)
                      +++..++.+.|+..|+++|.++|++.            +.|..-|.-.++.|+ +..|.++|..+|.++|++.    ..|
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchhHHHH
Confidence            77788999999999999999999764            456777888899999 9999999999999999865    678


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013821          396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV  434 (436)
Q Consensus       396 ~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~  434 (436)
                      .+++.+..++|+.++|+...+.++.++|.+..+.. .|+.
T Consensus       291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887765 4444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=1.2e-12  Score=124.87  Aligned_cols=205  Identities=15%  Similarity=0.077  Sum_probs=187.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +.+.+..+|..++.-+. ....+.+++|..+..+|+.++|+.+|-+.-.+--+++++++.++.+|..+.+..+|++++.+
T Consensus       505 d~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             cHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            44567788888888777 67789999999999999999999999999888888999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG  337 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g  337 (436)
                      +..+-|.++.++..||.+|-+.| |-.+|.+++-......|.+.+..-.|+                      ..|....
T Consensus       584 ~~slip~dp~ilskl~dlydqeg-dksqafq~~ydsyryfp~nie~iewl~----------------------ayyidtq  640 (840)
T KOG2003|consen  584 ANSLIPNDPAILSKLADLYDQEG-DKSQAFQCHYDSYRYFPCNIETIEWLA----------------------AYYIDTQ  640 (840)
T ss_pred             hcccCCCCHHHHHHHHHHhhccc-chhhhhhhhhhcccccCcchHHHHHHH----------------------HHHHhhH
Confidence            99999999999999999877765 699999999999999999999999999                      7778888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                      -+++|+.+|++|--+.|+.......++.|+.+.|+ |++|...|+..-...|.+.+.+.-|..+.-.+|-
T Consensus       641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn-yqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN-YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            89999999999999999988888999999999999 9999999999999999999988888888777663

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=3.1e-12  Score=114.04  Aligned_cols=177  Identities=19%  Similarity=0.203  Sum_probs=160.2

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      -.+..+....|+.+.|..++++.....|....+....|..+...|++++|+++|+..++-+|.+..++...-.+.-.+|+
T Consensus        56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence            34455667789999999999999999999999999999999999999999999999999999999988887777777776


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                       .-+|++.+...++..+.|.++|..++                      .+|...|+|++|.-||++++-++|.++..+.
T Consensus       136 -~l~aIk~ln~YL~~F~~D~EAW~eLa----------------------eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~  192 (289)
T KOG3060|consen  136 -NLEAIKELNEYLDKFMNDQEAWHELA----------------------EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ  192 (289)
T ss_pred             -cHHHHHHHHHHHHHhcCcHHHHHHHH----------------------HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence             77999999999999999999999999                      8999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          362 QYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       362 ~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      .+|.+++-+|.  ++.-|.++|.++++++|.+..+++.+-.+
T Consensus       193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            99999988775  36789999999999999887777665544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.52  E-value=1.2e-12  Score=126.75  Aligned_cols=158  Identities=15%  Similarity=0.024  Sum_probs=135.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      |....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++ ..+|++.+++++.++|+....+.++|
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999986 99999999999999999999999999


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                                            ..+.+.|++++|+..+++.+..+|+++..|..||.+|..+|+ ..+|..         
T Consensus       382 ----------------------~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~---------  429 (484)
T COG4783         382 ----------------------QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALL---------  429 (484)
T ss_pred             ----------------------HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHH---------
Confidence                                  888889999999999999999999999999999999999998 555544         


Q ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCChh
Q 013821          389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA-PIRQG  427 (436)
Q Consensus       389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~-p~~~~  427 (436)
                              ..+..|+..|++++|+..+.++.+.. .+|..
T Consensus       430 --------A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~  461 (484)
T COG4783         430 --------ARAEGYALAGRLEQAIIFLMRASQQVKLGFPD  461 (484)
T ss_pred             --------HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence                    44555666667777777766666553 44443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.51  E-value=7.5e-13  Score=111.45  Aligned_cols=117  Identities=19%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP  298 (436)
Q Consensus       219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p  298 (436)
                      +.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...++ +++|+.+|+++++.+|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence            356667777777777777777777777777777777777777777777777777777666654 6677777777666666


Q ss_pred             CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      .+...++.+|                      .++...|++++|+..|+++++.+|++..
T Consensus        83 ~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        83 DDPRPYFHAA----------------------ECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CChHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            6666666666                      6666666666666666666666666544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=1.2e-12  Score=110.25  Aligned_cols=117  Identities=19%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821          253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP  332 (436)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  332 (436)
                      +.|++++..+|++..+.+.+|.++...++ +++|+..|++++..+|.+..++..+|                      .+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la----------------------~~   60 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYNSRYWLGLA----------------------AC   60 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HH
Confidence            45677777777777777777777777664 77777777777777777777777777                      66


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH  393 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~  393 (436)
                      +...|++++|+.+|+++++.+|.++..++.+|.++...|+ +++|+..|+++++++|++..
T Consensus        61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE-PESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccch
Confidence            6777777777777777777777777777777777777777 77777777777777777654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.49  E-value=2.4e-13  Score=140.05  Aligned_cols=245  Identities=16%  Similarity=0.105  Sum_probs=203.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHH-----------------------
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL-----------------------  234 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~-----------------------  234 (436)
                      +-..+...+-+++.+++ ..+.+|.-+|.+|...-+...|..+|+++.++++.+..+                       
T Consensus       473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            34466788899999999 899999999999999999999999999999999876544                       


Q ss_pred             -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          235 -------------LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS  301 (436)
Q Consensus       235 -------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~  301 (436)
                                   |..+|..|...+++..|+..|+.++..+|.+...|..+|.+|...|+ +.-|++.|.++..++|.+.
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhH
Confidence                         44456666666777788888999999999999999999999999987 9999999999999999999


Q ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------------------------------
Q 013821          302 NILAAYACFLWEMEDDGEDDKAQEEHIQV---------------------------------------------------  330 (436)
Q Consensus       302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------------------------------  330 (436)
                      ...+..+......|++.+++..+...+..                                                   
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~  710 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ  710 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999988888722222                                                   


Q ss_pred             ------------------------------------------------------------------------hHHHH---
Q 013821          331 ------------------------------------------------------------------------LPIQS---  335 (436)
Q Consensus       331 ------------------------------------------------------------------------~~~~~---  335 (436)
                                                                                              .-|++   
T Consensus       711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~  790 (1238)
T KOG1127|consen  711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL  790 (1238)
T ss_pred             hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence                                                                                    11111   


Q ss_pred             -----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          336 -----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       336 -----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                           +.+-..|+.++++++++..++...|+.||.+ ...|+ +.-|..+|-+.+...|.....|.++|.++.+..+++.
T Consensus       791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn-va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~  868 (1238)
T KOG1127|consen  791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN-VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH  868 (1238)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch-hhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence                 2233578888999998888888888888877 55577 8888888888888889888889999999999999999


Q ss_pred             HHHHHHHHHhhCCCCh
Q 013821          411 DSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       411 A~~~~~~al~l~p~~~  426 (436)
                      |...|.++..++|..-
T Consensus       869 A~~af~~~qSLdP~nl  884 (1238)
T KOG1127|consen  869 AEPAFSSVQSLDPLNL  884 (1238)
T ss_pred             hhHHHHhhhhcCchhh
Confidence            9999999999888644

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.48  E-value=3.2e-12  Score=114.94  Aligned_cols=173  Identities=18%  Similarity=0.157  Sum_probs=156.9

Q ss_pred             HHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          186 LAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD  265 (436)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  265 (436)
                      +-......+ ++... .++...+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++..+.|.+
T Consensus        56 l~~~~~~~p-~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d  133 (257)
T COG5010          56 LGAAVLRNP-EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD  133 (257)
T ss_pred             HHHHHhcCc-chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence            344444444 45555 6777788888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY  345 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~  345 (436)
                      +++|..+|.+|.+.|+ +++|...|.+++++.|+++.+..++|                      ..+.-.|+++.|..+
T Consensus       134 ~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlg----------------------ms~~L~gd~~~A~~l  190 (257)
T COG5010         134 WEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLG----------------------MSLLLRGDLEDAETL  190 (257)
T ss_pred             hhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHH----------------------HHHHHcCCHHHHHHH
Confidence            9999999999999985 99999999999999999999999999                      888889999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      +.++....+.+..+..+++.+...+|+ +++|.....+-
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~~~~g~-~~~A~~i~~~e  228 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVVGLQGD-FREAEDIAVQE  228 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhhcCC-hHHHHhhcccc
Confidence            999999999999999999999999999 99998877653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.47  E-value=7.6e-11  Score=111.57  Aligned_cols=214  Identities=18%  Similarity=0.117  Sum_probs=131.7

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~  283 (436)
                      |..-+..|+|.+|++...+.-+..+.-..++..-+.+..++|+++.|-.++.++-+..++ ...+...++.++...+ |+
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~  169 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DY  169 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-Cc
Confidence            334444455555555555544444433444444444555555555555555555554332 2334444444444443 35


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH-----------------------------------------
Q 013821          284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK-----------------------------------------  322 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-----------------------------------------  322 (436)
                      ..|.....++++..|.++.++.....+|...|++.....                                         
T Consensus       170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~  249 (400)
T COG3071         170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK  249 (400)
T ss_pred             hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            555555555555555555555555555555555544444                                         


Q ss_pred             -----------------------------------HHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          323 -----------------------------------AQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       323 -----------------------------------~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                                                         ++.+.++.         .-....++...=++..++.++..|+++.
T Consensus       250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence                                               44444433         1122334444555555555555788999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .+..||..+++.+. |.+|..+|+.++...|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus       330 L~~tLG~L~~k~~~-w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         330 LLSTLGRLALKNKL-WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHhhH-HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999 99999999999999887 677899999999999999999999998865

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.46  E-value=7.5e-11  Score=129.39  Aligned_cols=218  Identities=14%  Similarity=0.028  Sum_probs=142.1

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQ  271 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~  271 (436)
                      ...|..+-..+.+.|++++|+.+|+++.+..  | +...|..+...|.+.|++++|.+.|.++...    .| +...|..
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna  584 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA  584 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence            4566666666777777777777777766532  3 4566677777777777777777777776552    22 3456666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcC
Q 013821          272 YAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKG  337 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g  337 (436)
                      +...|.+.++ +++|.+.|+++.+.+ +.+...|..+...+.+.|+.++|..++.++...             ..+.+.|
T Consensus       585 LI~ay~k~G~-ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G  663 (1060)
T PLN03218        585 LMKACANAGQ-VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG  663 (1060)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            6666666653 777777777777665 345666777777777777777777777665544             4566667


Q ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821          338 DLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      ++++|.++++++.+.. +-+..++..+..+|.+.|+ +++|+.+|++....  .| +...|..+...|.+.|++++|+++
T Consensus       664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlel  741 (1060)
T PLN03218        664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEV  741 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7777777777766653 2345666667777777776 77777777766543  33 355666677777777777777777


Q ss_pred             HHHHHh
Q 013821          415 SDQFQQ  420 (436)
Q Consensus       415 ~~~al~  420 (436)
                      |++...
T Consensus       742 f~eM~~  747 (1060)
T PLN03218        742 LSEMKR  747 (1060)
T ss_pred             HHHHHH
Confidence            766554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.45  E-value=1.1e-10  Score=128.19  Aligned_cols=222  Identities=9%  Similarity=-0.000  Sum_probs=165.2

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAK  274 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~  274 (436)
                      +...|..+-..+.+.|+.++|.++|+++.+... .+...|..+...|.+.|++++|++.|++.....- -+..+|..+..
T Consensus       471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~  550 (1060)
T PLN03218        471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS  550 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            345666666777788888888888888777542 2667778888888888888888888887766532 25667777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCC
Q 013821          275 LVWELHRDQHRALTYFERAALAA---PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGD  338 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~  338 (436)
                      .|.+.+. +++|.+.|++.....   ..+...+..+...+.+.|++++|.++++.+.+.             ..|.+.|+
T Consensus       551 a~~k~G~-~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~  629 (1060)
T PLN03218        551 ACGQSGA-VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD  629 (1060)
T ss_pred             HHHHCCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence            7777764 888888888876531   124566777777888888888888888766655             56778888


Q ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          339 LEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       339 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      +++|+..|.+..+.  .|+ ...|..+..++.+.|+ +++|.++++++.+.. +.+...+..+...|.+.|++++|.++|
T Consensus       630 ~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf  707 (1060)
T PLN03218        630 WDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY  707 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            88888888887765  344 6677888888888888 888888888887754 334678888888888888888888888


Q ss_pred             HHHHhh
Q 013821          416 DQFQQV  421 (436)
Q Consensus       416 ~~al~l  421 (436)
                      ++....
T Consensus       708 ~eM~~~  713 (1060)
T PLN03218        708 EDIKSI  713 (1060)
T ss_pred             HHHHHc
Confidence            887653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.44  E-value=2.6e-11  Score=120.67  Aligned_cols=230  Identities=12%  Similarity=0.050  Sum_probs=179.7

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV  276 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  276 (436)
                      .|.+.-..|..+...|+-++|..+...++..++....+|..+|.++....+|++|+.+|+.|+.++|+|..+|..++.+.
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            34455556666666789999999999999988888889999999999999999999999999999999999999998877


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHHc
Q 013821          277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQSK  336 (436)
Q Consensus       277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~  336 (436)
                      .+++ |++-....-.+.+++.|..-..|..++..+...|++..|..+++++.+.                    .+..+.
T Consensus       120 ~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~  198 (700)
T KOG1156|consen  120 IQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA  198 (700)
T ss_pred             HHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            7775 5888888888889999998889999998888889888888888866655                    566677


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHH
Q 013821          337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSS  415 (436)
Q Consensus       337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~  415 (436)
                      |.+++|.+.+..--..--+........|.++.++++ +++|...|...+..+|++...+..+-.++.+..+--+++ ..|
T Consensus       199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~-lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly  277 (700)
T KOG1156|consen  199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ-LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALY  277 (700)
T ss_pred             ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh-HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            777777766654433333344556667888889999 999999999999999999888888887876444444555 666


Q ss_pred             HHHHhhCCCChhH
Q 013821          416 DQFQQVAPIRQGA  428 (436)
Q Consensus       416 ~~al~l~p~~~~~  428 (436)
                      ...-+.+|.+..+
T Consensus       278 ~~ls~~y~r~e~p  290 (700)
T KOG1156|consen  278 AILSEKYPRHECP  290 (700)
T ss_pred             HHHhhcCcccccc
Confidence            6666666654443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.43  E-value=1.7e-11  Score=131.44  Aligned_cols=236  Identities=14%  Similarity=-0.017  Sum_probs=146.6

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      +.++|...+..-.   . .+..+|..+...+.+.|++++|+.+|+++.+.. .-+...+..+..++.+.|++++|.+.+.
T Consensus       274 ~~~~A~~vf~~m~---~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~  349 (697)
T PLN03081        274 DIEDARCVFDGMP---E-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA  349 (697)
T ss_pred             CHHHHHHHHHhCC---C-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4445666665432   2 355688888888899999999999998887643 2255677788888888888888888888


Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821          257 HATMAD-PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----  330 (436)
Q Consensus       257 ~al~~~-p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  330 (436)
                      .+++.. +.+..++..+...|.+.|+ +++|.+.|++..+   .+...|..+...|...|+.++|.++++++...     
T Consensus       350 ~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd  425 (697)
T PLN03081        350 GLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN  425 (697)
T ss_pred             HHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            887765 4466677777777777664 7777777776543   35566777777777777777777777766554     


Q ss_pred             --------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          331 --------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       331 --------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                              ..+...|++++|.++|+...+..+  -+...|..+..++.+.|+ +++|.+.+++. ...| +..+|..+..
T Consensus       426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~-~~~p-~~~~~~~Ll~  502 (697)
T PLN03081        426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRA-PFKP-TVNMWAALLT  502 (697)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence                    345556666666666666654321  113344445555555555 55555544432 1122 2334444444


Q ss_pred             HHHHCCChHHHHHHHHHHHhhCCC
Q 013821          401 FLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       401 ~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      .+...|+.+.|...+++.+.+.|.
T Consensus       503 a~~~~g~~~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        503 ACRIHKNLELGRLAAEKLYGMGPE  526 (697)
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCC
Confidence            444444444444444444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=119.20  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=107.3

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      .....-|+-+++.++|++|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..||.+|+.
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME  315 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  315 (436)
                      +++ +.+|++.|+++|+++|++...+.+|..+...++
T Consensus       162 ~gk-~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  162 LGK-YEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             cCc-HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            986 999999999999999999999988885444433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.43  E-value=1.9e-11  Score=131.11  Aligned_cols=213  Identities=10%  Similarity=-0.026  Sum_probs=143.3

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVW  277 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~  277 (436)
                      ..+..+-..|.+.|++++|.++|+++.   +.+...|..+...|.+.|++++|++.|++..+..- -+...+..+...+.
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~  336 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS  336 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            455666677777777777777777653   34566777777777777777777777777765432 24556666666767


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------hHHHHcCCHHHHHHHHH
Q 013821          278 ELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------LPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~g~~~~A~~~~~  347 (436)
                      ..+. +++|.+.+..+++.. +.+..++..+...|.+.|+.++|.++++++.+.         ..|.+.|+.++|++.|+
T Consensus       337 ~~g~-~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        337 RLAL-LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             hccc-hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            6664 777777777777765 446666777777777777777777777654333         56667777777777777


Q ss_pred             HHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          348 RAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--DSHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       348 ~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      +..+.  .|+ ..++..+..++.+.|. .++|..+|+...+..+-  +...|..+..+|.+.|+.++|.+.+++
T Consensus       416 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~-~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        416 RMIAEGVAPN-HVTFLAVLSACRYSGL-SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             HHHHhCCCCC-HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence            76654  233 5566666667777777 77777777777653221  235566777777777777777776654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=3.1e-12  Score=117.12  Aligned_cols=129  Identities=23%  Similarity=0.208  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      +-+..-|.-+.+.++|++|+..|.+||+++|.++..|.+.|.+|.+++. ++.|++.++.++.++|....+|..||    
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~iDp~yskay~RLG----  156 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-YEDAVKDCESALSIDPHYSKAYGRLG----  156 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHhcChHHHHHHHHHH----
Confidence            5567888999999999999999999999999999999999999999986 99999999999999999999999999    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD---KALCYFERAV  385 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~---eA~~~~~~al  385 (436)
                                        .+|..+|++++|++.|++||+++|++...+.+|.++-.++++ ..   .+...++-+.
T Consensus       157 ------------------~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e-~~~~~~~~~~~d~~~  213 (304)
T KOG0553|consen  157 ------------------LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE-PKSSAQASGSFDMAG  213 (304)
T ss_pred             ------------------HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC-CCcccccccchhhhh
Confidence                              999999999999999999999999999999999999888877 44   4444444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=2.2e-12  Score=129.70  Aligned_cols=198  Identities=15%  Similarity=0.130  Sum_probs=163.8

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..|-....+|...|+..+|..+..+-++ .|.++..|..+|.+....--|++|.++.+..      ++.+.+.+|...+.
T Consensus       425 emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~  497 (777)
T KOG1128|consen  425 EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILS  497 (777)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhcccccc
Confidence            4556666677777777777777777777 5557777777777666655555555555443      33355556655555


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      .+ +|.++.++++..++++|-....|+.+|                      .+..+.++++.|.++|.+++.++|++.+
T Consensus       498 ~~-~fs~~~~hle~sl~~nplq~~~wf~~G----------------------~~ALqlek~q~av~aF~rcvtL~Pd~~e  554 (777)
T KOG1128|consen  498 NK-DFSEADKHLERSLEINPLQLGTWFGLG----------------------CAALQLEKEQAAVKAFHRCVTLEPDNAE  554 (777)
T ss_pred             ch-hHHHHHHHHHHHhhcCccchhHHHhcc----------------------HHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence            44 699999999999999999999999999                      8888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      +|++++.+|..+++ -.+|...+++|++.+-++..+|-|+..+..+.|.+++|++.|.+.+.+..+..+
T Consensus       555 aWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d  622 (777)
T KOG1128|consen  555 AWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD  622 (777)
T ss_pred             hhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence            99999999999999 999999999999999888999999999999999999999999999998755544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.41  E-value=1.9e-11  Score=120.21  Aligned_cols=176  Identities=19%  Similarity=0.061  Sum_probs=147.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL  304 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~  304 (436)
                      +|+++.++..+|.++...|+++.|...+.++.+..|.+   .+.....+.+++..+ ++++|...++++++.+|++..++
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHH
Confidence            79999999999999999999999999999999887754   556777787877776 59999999999999999999777


Q ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      .. +..+...+                  ...+....+.+.+......+|....++..+|.++..+|+ +++|+..++++
T Consensus        81 ~~-~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~a  140 (355)
T cd05804          81 KL-HLGAFGLG------------------DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRA  140 (355)
T ss_pred             HH-hHHHHHhc------------------ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence            65 42222222                  123444455555554445677778888899999999999 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       385 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      +++.|++..++..++.++...|++++|+.++.+++...|.
T Consensus       141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            9999999999999999999999999999999999998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.40  E-value=2e-11  Score=126.10  Aligned_cols=220  Identities=15%  Similarity=0.004  Sum_probs=183.5

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHH-----HHcCCHHHHHHHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH--------------------PLLLRNYAQLL-----QKKGDLYRAEDYY  255 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--------------------~~~~~~la~~~-----~~~g~~~~A~~~~  255 (436)
                      .++.|.+......|.+|...+.....+.-++                    ....+..+..+     ...++...|...|
T Consensus       402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al  481 (1238)
T KOG1127|consen  402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL  481 (1238)
T ss_pred             hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4566666667777777776666665554111                    11111111111     2244578899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821          256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----  330 (436)
Q Consensus       256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  330 (436)
                      -+++.+++..+.+|..||.+|.... |...|.++|++|.++|+.+..++...+..+....+++.|..++...-+.     
T Consensus       482 i~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~  560 (1238)
T KOG1127|consen  482 IRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA  560 (1238)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence            9999999999999999999999987 6999999999999999999999999999999999999998886543333     


Q ss_pred             ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                               ..|...+++.+|+..|+.|++.+|.+...|..+|.+|...|+ +.-|++.|.+|..++|.+..+.+-.+..
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~  639 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVM  639 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence                     567788999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHCCChHHHHHHHHHHHhhC
Q 013821          402 LWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       402 ~~~~g~~~eA~~~~~~al~l~  422 (436)
                      ...+|+|.+|+..+...+...
T Consensus       640 ecd~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  640 ECDNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             HHHhhhHHHHHHHHHHHHHHH
Confidence            999999999999998877653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.40  E-value=4.4e-11  Score=116.02  Aligned_cols=156  Identities=19%  Similarity=0.099  Sum_probs=142.8

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ....++++.+..++..|++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|..+..++++|.+
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            34478899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      |...++ +.+|+..+++.+..+|+++..|..|+..+..+|+..++.....     ..|...|++++|+..+.++.+...-
T Consensus       384 ll~~g~-~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----E~~~~~G~~~~A~~~l~~A~~~~~~  457 (484)
T COG4783         384 LLKGGK-PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----EGYALAGRLEQAIIFLMRASQQVKL  457 (484)
T ss_pred             HHhcCC-hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHhccC
Confidence            999986 9999999999999999999999999999999999888877766     5566789999999999988887644


Q ss_pred             CH
Q 013821          356 DG  357 (436)
Q Consensus       356 ~~  357 (436)
                      +.
T Consensus       458 ~~  459 (484)
T COG4783         458 GF  459 (484)
T ss_pred             Cc
Confidence            33

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=1.1e-10  Score=104.24  Aligned_cols=189  Identities=16%  Similarity=0.083  Sum_probs=163.8

Q ss_pred             CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 013821          212 DDSAEAEEYYKRMIDEY------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR  285 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~  285 (436)
                      .+.++-++++...+...      |+.-.++-....+....|+.+-|..++++.....|+...+....|..+...+. +++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~-~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN-YKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc-hhh
Confidence            34466666666655533      33345566667777889999999999999999999999999999988888875 999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK  365 (436)
Q Consensus       286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  365 (436)
                      |+++|+..++-+|.|...+....                      .+...+|+--+|++.+..-++..+.|.++|..++.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKl----------------------Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKL----------------------AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHH----------------------HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            99999999999999998887666                      66777888889999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCC
Q 013821          366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---EDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       366 ~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~l~p~  424 (436)
                      +|...|+ |++|.-++++.+-+.|-++..+..+|.+++-+|   +..-|.++|.+++++.|.
T Consensus       163 iY~~~~~-f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  163 IYLSEGD-FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHhHhH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence            9999999 999999999999999999999999999988887   456699999999999984

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.38  E-value=5.6e-11  Score=118.28  Aligned_cols=221  Identities=14%  Similarity=0.101  Sum_probs=180.8

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH  284 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~  284 (436)
                      ..-.+..++|...++..+..++..|++++.+...|..+..+|+-++|..+...++..++.....|..+|.++.... +|+
T Consensus        14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~   92 (700)
T KOG1156|consen   14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYD   92 (700)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHH
Confidence            3445566999999999999999999999999999999999999999999999999999999999999998877765 599


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHh
Q 013821          285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILA  352 (436)
Q Consensus       285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~  352 (436)
                      +|+++|+.|+.+.|+|..+|.-++.+...+++++.....-.+.++.            ..+...|++..|...++.-...
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888777666655554            6667788999998888777665


Q ss_pred             C---CCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          353 N---PGD-----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       353 ~---p~~-----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      .   |..     .+.......++...|. +++|++.+..--..--+........+.++.++++.++|+..|+..+..+|+
T Consensus       173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd  251 (700)
T KOG1156|consen  173 QNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD  251 (700)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence            4   331     2345555666677777 777777766533222233345567789999999999999999999999998


Q ss_pred             Chh
Q 013821          425 RQG  427 (436)
Q Consensus       425 ~~~  427 (436)
                      ...
T Consensus       252 n~~  254 (700)
T KOG1156|consen  252 NLD  254 (700)
T ss_pred             hHH
Confidence            544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=4.6e-10  Score=114.09  Aligned_cols=216  Identities=19%  Similarity=0.183  Sum_probs=138.7

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH----  280 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----  280 (436)
                      ..++...|++++|++++++....-.+...++-..|.++.++|++++|...|...+..+|++...+..+..++....    
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence            3455666777777777777777777777777777777777777777777777777777777777777776653222    


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHH--------------------------------HHHHHHHHHHccCchHHHHHHHHHH
Q 013821          281 RDQHRALTYFERAALAAPQDSNI--------------------------------LAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~~~--------------------------------~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      .+.+.-...|++.....|.....                                ..++-.+|....+..-...++..+.
T Consensus        91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~  170 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV  170 (517)
T ss_pred             ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            12455566666665555532111                                1111111111111111111111111


Q ss_pred             HH-----------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013821          329 QV-----------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC  379 (436)
Q Consensus       329 ~~-----------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~  379 (436)
                      ..                             ..|...|++++|++++++||+..|..++.+...|.++.+.|+ +.+|..
T Consensus       171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-~~~Aa~  249 (517)
T PF12569_consen  171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD-LKEAAE  249 (517)
T ss_pred             HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-HHHHHH
Confidence            00                             455677888888888888888888888888888888888888 888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .++.|-.+++.|-.+-...+..+.+.|+.++|.+.......-
T Consensus       250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            888888888877777777777788888888887776655443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=1.7e-11  Score=103.40  Aligned_cols=116  Identities=15%  Similarity=0.062  Sum_probs=104.2

Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821          292 RAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL  370 (436)
Q Consensus       292 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  370 (436)
                      -+..+. ++..+..+.+|                      ..+...|++++|+..|+-+..++|.+...|++||.++..+
T Consensus        25 ~l~~~~~~~~l~~lY~~A----------------------~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~   82 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYA----------------------MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ   82 (157)
T ss_pred             HHHCCChHHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            344556 66777888888                      8888999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCChhHHh
Q 013821          371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA---PIRQGAVT  430 (436)
Q Consensus       371 g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~---p~~~~~~~  430 (436)
                      |+ |.+|+..|.+++.++|+++..++++|.+++..|+.+.|.+.|+.++...   |.+.....
T Consensus        83 g~-~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~  144 (157)
T PRK15363         83 KH-WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQ  144 (157)
T ss_pred             hh-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence            99 9999999999999999999999999999999999999999999999885   44444333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.32  E-value=6.6e-11  Score=99.81  Aligned_cols=102  Identities=12%  Similarity=-0.008  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821          263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                      ++.-+..+.+|..++..|+ +++|+..|+-+..++|.+...|++||                      .++..+|+|++|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~-l~~A~~~f~~L~~~Dp~~~~y~~gLG----------------------~~~Q~~g~~~~A   88 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKE-FAGAARLFQLLTIYDAWSFDYWFRLG----------------------ECCQAQKHWGEA   88 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHHhhHHHH
Confidence            4444555555555555543 66666666666666666666666666                      555556666666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                      +..|.+|+.++|+++..++++|.|+...|+ .+.|++.|+.++...
T Consensus        89 I~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         89 IYAYGRAAQIKIDAPQAPWAAAECYLACDN-VCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666 666666666666554

>PLN03077 Protein ECB2; Provisional

Probab=99.31  E-value=4e-10  Score=123.70  Aligned_cols=246  Identities=10%  Similarity=0.037  Sum_probs=141.2

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +.+.+...+.......-..+...+..+-..|.+.|++++|.++|+++.+   .+...|..+...|.+.|++++|+..|++
T Consensus       404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~  480 (857)
T PLN03077        404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQ  480 (857)
T ss_pred             hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4445555555554443333345666666677777777777777776543   2445666666667777777777777776


Q ss_pred             HHHhCCCCHHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          258 ATMADPGDGESW-----------------------------------MQYAKLVWELHRDQHRALTYFERAALAAPQDSN  302 (436)
Q Consensus       258 al~~~p~~~~~~-----------------------------------~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~  302 (436)
                      .+...+.+...+                                   ..+...|.+.|+ +++|...|+..    +.+..
T Consensus       481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~-~~~A~~~f~~~----~~d~~  555 (857)
T PLN03077        481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR-MNYAWNQFNSH----EKDVV  555 (857)
T ss_pred             HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC-HHHHHHHHHhc----CCChh
Confidence            654322222111                                   122244444443 66666666554    44566


Q ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Q 013821          303 ILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEYFSRAILA---NPGDGEIMSQYAKL  366 (436)
Q Consensus       303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~  366 (436)
                      .|..+...+...|+.++|+++++++...             ..+.+.|++++|.++|+...+.   .|+ ...|..+..+
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~  634 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDL  634 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHH
Confidence            6666666677777777777776665554             4455666666666666666533   222 4556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013821          367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY  435 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~y  435 (436)
                      +.+.|+ +++|.+.+++. ...|+ ..+|..+...+...|+.+.+....++++++.|+...... .+|+|
T Consensus       635 l~r~G~-~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        635 LGRAGK-LTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             HHhCCC-HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            666666 66666666653 23343 445555555555566666666666666666665554444 44444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=5.4e-11  Score=116.71  Aligned_cols=114  Identities=24%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  280 (436)
                      +...|..++..|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+..+++++.++|.++.+++.+|.+++.++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45667888899999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013821          281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEME  315 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  315 (436)
                      + +++|+..|+++++++|++..+...++.+...+.
T Consensus        85 ~-~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         85 E-YQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            5 999999999999999999999998888866653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.31  E-value=1.1e-11  Score=117.14  Aligned_cols=241  Identities=9%  Similarity=0.026  Sum_probs=183.5

Q ss_pred             ChHHHHHhhcCCCCCCc---hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHH
Q 013821          181 SPPMYLAMGLGISVPGF---DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRA  251 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A  251 (436)
                      .-..+|..++...-.+.   ...|..+|+.|..+++|++|+++-..-+.+      .-..+..--++|+++..+|.|++|
T Consensus        35 aGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA  114 (639)
T KOG1130|consen   35 AGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEA  114 (639)
T ss_pred             hhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchH
Confidence            34566777777766322   267888999999999999999875443322      223445667899999999999999


Q ss_pred             HHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCC------C
Q 013821          252 EDYYNHATMADPG------DGESWMQYAKLVWELHRD-------------------QHRALTYFERAALAAPQ------D  300 (436)
Q Consensus       252 ~~~~~~al~~~p~------~~~~~~~la~~~~~~~~d-------------------~~~A~~~~~~al~~~p~------~  300 (436)
                      +.+..+-+.+..+      ...+++++|.+|...|+-                   ++.|.++|+.-+++...      .
T Consensus       115 ~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aq  194 (639)
T KOG1130|consen  115 LTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQ  194 (639)
T ss_pred             HHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            9998887765322      467899999999877641                   24566666666555432      2


Q ss_pred             HHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhC------CCC
Q 013821          301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILAN------PGD  356 (436)
Q Consensus       301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~------p~~  356 (436)
                      ..++-+||..|+-+|+++.|+..-+.-+..                  .++.-.|+++.|+++|++++.+.      ...
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            334568899999999999998877754443                  77888899999999999987653      223


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +...+.||..|.-..+ +++|+.++.+-+.+..      ....+++.||..+-.+|..++|+.+.++.+++.
T Consensus       275 AQscYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            6678999999999988 9999999999776643      235788999999999999999999999888765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.30  E-value=6.4e-10  Score=113.00  Aligned_cols=242  Identities=15%  Similarity=0.046  Sum_probs=164.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-----DLYRAE  252 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-----~~~~A~  252 (436)
                      +++.|..++......-. +.....-..|.++.++|++++|...|+..|+.+|++...+..+..+.....     +.+.-.
T Consensus        19 ~~~~AL~~L~~~~~~I~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~   97 (517)
T PF12569_consen   19 DYEEALEHLEKNEKQIL-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL   97 (517)
T ss_pred             CHHHHHHHHHhhhhhCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence            44567777766555444 556677788999999999999999999999999999999999999884333     456667


Q ss_pred             HHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC
Q 013821          253 DYYNHATMADPGD--------------------------------GESWMQYAKLVWELHRDQHRALTYFERAAL---AA  297 (436)
Q Consensus       253 ~~~~~al~~~p~~--------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~---~~  297 (436)
                      ..|+......|..                                |.++..+-.+|....+ ..-....+...+.   ..
T Consensus        98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K-~~~i~~l~~~~~~~l~~~  176 (517)
T PF12569_consen   98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK-AAIIESLVEEYVNSLESN  176 (517)
T ss_pred             HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH-HHHHHHHHHHHHHhhccc
Confidence            7777776666543                                1111111111110000 0001111111110   00


Q ss_pred             ------------CCCHH--HHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHH
Q 013821          298 ------------PQDSN--ILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       298 ------------p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~  351 (436)
                                  |....  +++.++..+...|++++|+..+++++..            .++...|++.+|.++++.|-.
T Consensus       177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~  256 (517)
T PF12569_consen  177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE  256 (517)
T ss_pred             CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                        01111  2244566666666666666666655554            899999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PAD-------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +++.|-.+....+..+.+.|+ +++|...+......+  |..       .+.....|.+|.+.|++..|++.|..+....
T Consensus       257 LD~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  257 LDLADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             CChhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999998888889999999999 999999988765544  211       1444667889999999999999998888764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=4.8e-10  Score=113.76  Aligned_cols=207  Identities=15%  Similarity=0.061  Sum_probs=144.6

Q ss_pred             HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      ...+..+..+++ .++.+.+.++.-+...++.+.|..+.+++++.+ -+++.+|..+|.++-..+++.+|+...+-++.-
T Consensus       464 lqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  464 LQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             HHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            344555556666 555666666666666666666666666666663 344566666666666666666666665555554


Q ss_pred             CCCC----------------------------------------------------------------------------
Q 013821          262 DPGD----------------------------------------------------------------------------  265 (436)
Q Consensus       262 ~p~~----------------------------------------------------------------------------  265 (436)
                      .|+|                                                                            
T Consensus       543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~  622 (799)
T KOG4162|consen  543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS  622 (799)
T ss_pred             hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence            4441                                                                            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013821          266 ---------------------------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG  318 (436)
Q Consensus       266 ---------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  318 (436)
                                                 ...|...+..+...+ ..++|..++.++-.++|..+..|+..|.++...|+..
T Consensus       623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~-~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~  701 (799)
T KOG4162|consen  623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG-NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE  701 (799)
T ss_pred             hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH
Confidence                                       123334444433333 3566777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHH------------hHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          319 EDDKAQEEHIQV------------LPIQSKGDLEGAEE--YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       319 ~A~~~~~~~~~~------------~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      +|.+.+..++..            .++.+.|+..-|..  .+..+++++|.++++|+++|.++.++|+ .++|.++|..+
T Consensus       702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd-~~~Aaecf~aa  780 (799)
T KOG4162|consen  702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD-SKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc-hHHHHHHHHHH
Confidence            777777655544            77888888887877  9999999999999999999999999999 99999999999


Q ss_pred             HHhCCCCH
Q 013821          385 VQASPADS  392 (436)
Q Consensus       385 l~~~p~~~  392 (436)
                      +++.+.+|
T Consensus       781 ~qLe~S~P  788 (799)
T KOG4162|consen  781 LQLEESNP  788 (799)
T ss_pred             HhhccCCC
Confidence            99998766

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.29  E-value=9.7e-11  Score=114.95  Aligned_cols=113  Identities=17%  Similarity=0.152  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      +...|..++..|+|++|+.+|+++++++|.++.+++.+|.++..+++ +++|+..++++++++|++..+++.+|      
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~l~P~~~~a~~~lg------   77 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN-FTEAVADANKAIELDPSLAKAYLRKG------   77 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCCHHHHHHHH------
Confidence            45567777777888888888888888888877777777777777764 77777777777777777777777777      


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL  370 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  370 (436)
                                      .++..+|+|++|+..|+++++++|++..+...++.+...+
T Consensus        78 ----------------~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         78 ----------------TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             ----------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                            7777777777777777777777777777777777665554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.27  E-value=3.2e-10  Score=120.31  Aligned_cols=177  Identities=12%  Similarity=0.009  Sum_probs=146.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-----  301 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-----  301 (436)
                      ..|.+..+|..++..+...+++++|+..++.+++..|+...+++.+|.+++..+. +.++.-.  .++...+.+.     
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhh--hhhhhcccccchhHH
Confidence            4688999999999999999999999999999999999999999999998877764 6666555  5555555443     


Q ss_pred             --------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          302 --------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV  367 (436)
Q Consensus       302 --------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  367 (436)
                                    .+++.+|                      .+|.++|++++|...|+++++.+|+++.+++++|..|
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA----------------------~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~  160 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLA----------------------EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY  160 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence                          5666666                      8899999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHh--------------------CCCCHHH--------HHHHH------------HHHHHCCC
Q 013821          368 WELHHDHDKALCYFERAVQA--------------------SPADSHV--------LAAYA------------CFLWETEE  407 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~--------------------~p~~~~~--------~~~la------------~~~~~~g~  407 (436)
                      ... + +++|+.++.+|+..                    +|++...        ...++            ..|...++
T Consensus       161 ae~-d-L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~  238 (906)
T PRK14720        161 EEE-D-KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED  238 (906)
T ss_pred             HHh-h-HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence            998 6 99999999998764                    3444322        12223            56778889


Q ss_pred             hHHHHHHHHHHHhhCCCChhHHh
Q 013821          408 DEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       408 ~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +++++.+++.+++.+|....+..
T Consensus       239 ~~~~i~iLK~iL~~~~~n~~a~~  261 (906)
T PRK14720        239 WDEVIYILKKILEHDNKNNKARE  261 (906)
T ss_pred             hhHHHHHHHHHHhcCCcchhhHH
Confidence            99999999999999987655543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=6.4e-10  Score=109.82  Aligned_cols=214  Identities=14%  Similarity=0.079  Sum_probs=161.6

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      .+...|+|++|+....+.+...|++..++...-.++.+.++|++|+...++-....-.+ ...+..|.|.+++++ .++|
T Consensus        21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk-~Dea   98 (652)
T KOG2376|consen   21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK-LDEA   98 (652)
T ss_pred             HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc-HHHH
Confidence            34455999999999999999999999999999999999999999995554433222222 223789999999987 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----hHHHHcCCHHHHHHH---HHHHHHhCCC-CH
Q 013821          287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----LPIQSKGDLEGAEEY---FSRAILANPG-DG  357 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~g~~~~A~~~---~~~al~~~p~-~~  357 (436)
                      +.+++   -.++.+..++...+.++++++++++|..+|+...+.     ....+.+-...+-..   ..+.+...|. ..
T Consensus        99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy  175 (652)
T KOG2376|consen   99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY  175 (652)
T ss_pred             HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence            99999   567777888899999999999999999999876655     111111111111111   2233333444 56


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQAS-------PAD--------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +.++|.+.++...|+ |.+|++.+++++.+.       ..+        ..+...++.++..+|+.++|...|...+...
T Consensus       176 el~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  176 ELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            789999999999999 999999999995431       111        1466789999999999999999999999987


Q ss_pred             CCCh
Q 013821          423 PIRQ  426 (436)
Q Consensus       423 p~~~  426 (436)
                      |.-.
T Consensus       255 ~~D~  258 (652)
T KOG2376|consen  255 PADE  258 (652)
T ss_pred             CCCc
Confidence            6543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=2.5e-09  Score=103.10  Aligned_cols=254  Identities=18%  Similarity=0.151  Sum_probs=198.8

Q ss_pred             hcCCCChHHHHHhhcCCCCCCch-hhhhhHHhhhhhCCC---HHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 013821          176 IERPVSPPMYLAMGLGISVPGFD-DAGEVVDLIMPNFDD---SAEAE-----EYYKRMIDEYPCHPLLLRNYAQLLQKKG  246 (436)
Q Consensus       176 ~~~p~~a~~~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~---~~~A~-----~~~~~al~~~P~~~~~~~~la~~~~~~g  246 (436)
                      +.+.+.+...|..|+..-+.+.+ ..+.+.-..--+.|+   .++++     -.|++.+..+|.+-++|+.+-.+-...|
T Consensus       257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g  336 (677)
T KOG1915|consen  257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG  336 (677)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence            33455666777777777774322 112222222222333   33443     3478889999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Q 013821          247 DLYRAEDYYNHATMADPGD---------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWE  313 (436)
Q Consensus       247 ~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~  313 (436)
                      +.+.-.+.|++|+..-|..         ...|.+++..-...-.|.+.+.+.|+.++++-|.    .+.+|..++.+..+
T Consensus       337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR  416 (677)
T KOG1915|consen  337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR  416 (677)
T ss_pred             CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence            9999999999999987764         2345555533222334789999999999999997    57789999999999


Q ss_pred             ccCchHHHHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821          314 MEDDGEDDKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE  382 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~  382 (436)
                      +.+...|.+++..++-.           .+-.++++++....+|++-|+..|.+..+|...|.+-..+|+ .+.|...|+
T Consensus       417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd-tdRaRaife  495 (677)
T KOG1915|consen  417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD-TDRARAIFE  495 (677)
T ss_pred             HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence            99999999999876655           667788999999999999999999999999999999999999 999999999


Q ss_pred             HHHHhCCCC-H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          383 RAVQASPAD-S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       383 ~al~~~p~~-~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      -|+....-+ + ..|..+..+-...|.++.|..+|++.|+..++...-..
T Consensus       496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis  545 (677)
T KOG1915|consen  496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS  545 (677)
T ss_pred             HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence            998754322 2 45677888889999999999999999999887654433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.24  E-value=3.9e-11  Score=113.56  Aligned_cols=216  Identities=12%  Similarity=0.032  Sum_probs=167.5

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAK  274 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~  274 (436)
                      |.-+++.|+....+..|+.+++..-++.    .+|..+|++|+.+++|++|+++-..-+.+      .-..+...-+||.
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            4567889999999999999999877664    67889999999999999999986654433      2234556678999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCc-------------hHHHHHHHHH-------H
Q 013821          275 LVWELHRDQHRALTYFERAALAAP------QDSNILAAYACFLWEMEDD-------------GEDDKAQEEH-------I  328 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~~-------~  328 (436)
                      ++-.+|. |++|+.++.+-+.+..      ....+++++|.+|...|+-             +++...++.+       +
T Consensus       104 tlKv~G~-fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  104 TLKVKGA-FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             hhhhhcc-cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            9888876 9999999999887643      2567899999999888741             2222333222       1


Q ss_pred             HH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          329 QV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       329 ~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      +.                  ..|+..|+|++|+..-+.-|++....      -.++.++|.++.-+|+ ++.|+++|+++
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~t  261 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLT  261 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHH
Confidence            11                  77888899999999988888775432      3588999999999999 99999999997


Q ss_pred             HHhC----CCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          385 VQAS----PAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       385 l~~~----p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +.+.    ...  ....+.||..|.-..++++||.++.+-+++.
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543    322  3567889999999999999999998877764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=5.4e-10  Score=103.16  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR--DQHRALTY  289 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--d~~~A~~~  289 (436)
                      ...++.+.-++..+..+|++++-|..||.+|..+|++..|...|.+|+++.|++++++..+|.+++...+  +..++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            4467888899999999999999999999999999999999999999999999999999999999988764  45799999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      +++++..+|.+..++..|+                      ..++..|+|.+|+..++..++..|.+..
T Consensus       216 l~~al~~D~~~iral~lLA----------------------~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         216 LRQALALDPANIRALSLLA----------------------FAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999                      9999999999999999999999886543

>PLN03077 Protein ECB2; Provisional

Probab=99.20  E-value=3.8e-09  Score=116.05  Aligned_cols=231  Identities=10%  Similarity=0.016  Sum_probs=186.9

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh-CCCCHHH----------------------
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLL----------------------  234 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~~----------------------  234 (436)
                      +.+.|...+..-.   . .+...|..+...+.+.|++++|+.+|++++.. .|+....                      
T Consensus       439 ~~~~A~~vf~~m~---~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        439 CIDKALEVFHNIP---E-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             CHHHHHHHHHhCC---C-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            5556766666533   2 34568999999999999999999999999864 3432211                      


Q ss_pred             ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Q 013821          235 ------------LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--PQD  300 (436)
Q Consensus       235 ------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--p~~  300 (436)
                                  +..+...|.+.|++++|...|+..    +.+...|..+...|...|. .++|++.|++..+..  |+ 
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd-  588 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPD-  588 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCC-
Confidence                        123346788889999999988876    6688899999999888875 999999999998754  44 


Q ss_pred             HHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                      ...+..+...+...|..++|.++++.+...              .++.+.|++++|.+.+++. .+.|+ ..+|..|-.+
T Consensus       589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~a  666 (857)
T PLN03077        589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNA  666 (857)
T ss_pred             cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHH
Confidence            445666667889999999999999988743              7888999999999999885 35665 7788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      +...|+ .+.|....++++++.|++...+..++.+|...|++++|.+..+...+.
T Consensus       667 c~~~~~-~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        667 CRIHRH-VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHHcCC-hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            877777 999999999999999999999999999999999999999998877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.19  E-value=7.4e-09  Score=95.98  Aligned_cols=175  Identities=11%  Similarity=0.030  Sum_probs=113.4

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL---LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWM  270 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  270 (436)
                      .+..+...|...+..|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            34456667777788899999999999999999988744   5899999999999999999999999998876   56788


Q ss_pred             HHHHHHHHHc--------------CC---HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          271 QYAKLVWELH--------------RD---QHRALTYFERAALAAPQDSNIL---AAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       271 ~la~~~~~~~--------------~d---~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      .+|.++...+              +|   ..+|+..|++.++..|+...+-   ..+..+...+...+-  .+.      
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~--~ia------  182 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL--SVA------  182 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH--HHH------
Confidence            8887754432              11   2478899999999999864332   222211111100000  000      


Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCY  380 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~  380 (436)
                      ..|.+.|.|..|+.-++.+++..|+.   .+++..++.++..+|. .++|...
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~-~~~a~~~  234 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL-NAQADKV  234 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC-hHHHHHH
Confidence            44445555555555555555554432   3444555555555555 4444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=5.2e-10  Score=112.91  Aligned_cols=181  Identities=13%  Similarity=0.132  Sum_probs=151.7

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      ..++..+...|-...|+..|++.        ..|-....||...|+..+|.....+-++ .|.++..|..+|++....  
T Consensus       402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~--  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP--  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh--
Confidence            45777888888888888888875        5567788888888988999888888888 777888888888775433  


Q ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          282 DQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM  360 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  360 (436)
                            .+|++++++..+ +..+...+|                      ......++|+++.+.++..++++|-....|
T Consensus       471 ------s~yEkawElsn~~sarA~r~~~----------------------~~~~~~~~fs~~~~hle~sl~~nplq~~~w  522 (777)
T KOG1128|consen  471 ------SLYEKAWELSNYISARAQRSLA----------------------LLILSNKDFSEADKHLERSLEINPLQLGTW  522 (777)
T ss_pred             ------HHHHHHHHHhhhhhHHHHHhhc----------------------cccccchhHHHHHHHHHHHhhcCccchhHH
Confidence                  344555544332 333455555                      556678999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +.+|.+..++++ ++.|.++|.+.+.++|++..+|.+++.+|.+.++..+|...+.++++-+
T Consensus       523 f~~G~~ALqlek-~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  523 FGLGCAALQLEK-EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HhccHHHHHHhh-hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            999999999999 9999999999999999999999999999999999999999999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.18  E-value=4.8e-09  Score=94.78  Aligned_cols=170  Identities=18%  Similarity=0.148  Sum_probs=114.1

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWM  270 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  270 (436)
                      .+..+...|...+..|++.+|+..|++++...|...   .+.+.+|.+++..|++++|+..+++.++..|.+   +.+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            345678888899999999999999999999988754   889999999999999999999999999999886   56888


Q ss_pred             HHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821          271 QYAKLVWELHRD----------QHRALTYFERAALAAPQDSNIL---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG  337 (436)
Q Consensus       271 ~la~~~~~~~~d----------~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g  337 (436)
                      .+|.+++....+          ..+|+..|+..++..|+...+-   ..+..+-..+...+-  .+      ...|.+.|
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~--~i------a~~Y~~~~  155 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL--YI------ARFYYKRG  155 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH--HH------HHHHHCTT
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHcc
Confidence            999887765321          3589999999999999865432   212211111000000  00      05566666


Q ss_pred             CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHH
Q 013821          338 DLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~  375 (436)
                      .|..|+..++.+++..|+..   +++..++.++.++|. .+
T Consensus       156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~-~~  195 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL-KQ  195 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT--HH
T ss_pred             cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC-hH
Confidence            66666666666666666543   455666666666666 44

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.17  E-value=1.2e-09  Score=95.63  Aligned_cols=129  Identities=18%  Similarity=0.165  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      ..+..+...+...++.++.+  ..+++.+|.++...|++++|+..|++++.+.|+   .+.++.++|.++...++ +++|
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA   91 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKA   91 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHH
Confidence            33555666665555555444  467788888888889999999999999888665   34588888888888875 8999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH-------HHHHHHHHHHHhCCCC
Q 013821          287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE-------GAEEYFSRAILANPGD  356 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~-------~A~~~~~~al~~~p~~  356 (436)
                      +.+|++++.++|.....+.+++.++...|               ..+...|+++       +|+.+|++++..+|.+
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~---------------~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRG---------------EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhh---------------HHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999998888888888887776655               4444566655       4444455555555543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=5e-09  Score=97.75  Aligned_cols=152  Identities=13%  Similarity=0.065  Sum_probs=116.6

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++.-|..++.-...+++......-.-+|.+++.+|+|++|+..|+-+...+..+.+.+.++|.|++-.|.|.+|.....+
T Consensus        37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence            66678888888887777544455566788999999999999999999987777889999999999999999999877665


Q ss_pred             HHH--------------hCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          258 ATM--------------ADPG------------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       258 al~--------------~~p~------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      +-+              ++.+            ..+-...+|.+.+.... |++|+..|++++.-+|+....-..++.++
T Consensus       117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn~ey~alNVy~ALCy  195 (557)
T KOG3785|consen  117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-YQEAIDVYKRVLQDNPEYIALNVYMALCY  195 (557)
T ss_pred             CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence            421              1111            12233445656665554 99999999999999999888888899999


Q ss_pred             HHccCchHHHHHHHHHHHH
Q 013821          312 WEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~  330 (436)
                      .++.-++-+.+.+.-|++.
T Consensus       196 yKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  196 YKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             HhcchhhhHHHHHHHHHHh
Confidence            9998888777777654444

>PRK11906 transcriptional regulator; Provisional

Probab=99.15  E-value=4.1e-09  Score=102.99  Aligned_cols=161  Identities=14%  Similarity=0.135  Sum_probs=133.3

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCH
Q 013821          236 RNYAQLLQKKGD---LYRAEDYYNHAT---MADPGDGESWMQYAKLVWEL--------HRDQHRALTYFERAALAAPQDS  301 (436)
Q Consensus       236 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~--------~~d~~~A~~~~~~al~~~p~~~  301 (436)
                      +..|......+.   .+.|+.+|.+++   +++|+.+.++..++.|++..        ..+..+|.+..++|++++|.|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            666666655544   467899999999   99999999999999998765        1235688999999999999999


Q ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821          302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF  381 (436)
Q Consensus       302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~  381 (436)
                      .++..+|                      .++...++++.|+..|++|+.++|+.+.+|+..|.+....|+ .++|...+
T Consensus       339 ~a~~~~g----------------------~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i  395 (458)
T PRK11906        339 KILAIMG----------------------LITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICI  395 (458)
T ss_pred             HHHHHHH----------------------HHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            9999999                      766777889999999999999999999999999999999999 99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH-HHHCCChHHHHHHHHHHH
Q 013821          382 ERAVQASPADSHVLAAYACF-LWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       382 ~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~~~~al  419 (436)
                      +++++++|....+-...-++ .+-....++|+..|-+-.
T Consensus       396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (458)
T PRK11906        396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET  434 (458)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence            99999999866554444444 444556788888776543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=3.5e-09  Score=92.55  Aligned_cols=195  Identities=11%  Similarity=0.025  Sum_probs=138.2

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      .|..++.+|.-.+..                |-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++
T Consensus        64 RA~l~fERGvlYDSl----------------GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E  127 (297)
T COG4785          64 RAQLLFERGVLYDSL----------------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE  127 (297)
T ss_pred             HHHHHHHhcchhhhh----------------hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence            455666666666665                8899999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      ++|....+..+.|..++.-|+ +.-|.+.+.+-.+.+|+++.--..+-                       +-...-+..
T Consensus       128 LDp~y~Ya~lNRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DPfR~LWLY-----------------------l~E~k~dP~  183 (297)
T COG4785         128 LDPTYNYAHLNRGIALYYGGR-YKLAQDDLLAFYQDDPNDPFRSLWLY-----------------------LNEQKLDPK  183 (297)
T ss_pred             cCCcchHHHhccceeeeecCc-hHhhHHHHHHHHhcCCCChHHHHHHH-----------------------HHHhhCCHH
Confidence            999999999999999888876 99999999999999999986433222                       112234455


Q ss_pred             HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHH
Q 013821          341 GAEEYFS-RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       341 ~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~  412 (436)
                      +|...+. ++...+ +....|+..+..+.+..     -...++++.+...++.       +.++.+|+.+...|+.++|.
T Consensus       184 ~A~tnL~qR~~~~d-~e~WG~~iV~~yLgkiS-----~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~  257 (297)
T COG4785         184 QAKTNLKQRAEKSD-KEQWGWNIVEFYLGKIS-----EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEAT  257 (297)
T ss_pred             HHHHHHHHHHHhcc-HhhhhHHHHHHHHhhcc-----HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            5554433 333322 22334443333322221     1233444443333322       56777788888888888888


Q ss_pred             HHHHHHHhh
Q 013821          413 KSSDQFQQV  421 (436)
Q Consensus       413 ~~~~~al~l  421 (436)
                      ..|+-+++-
T Consensus       258 ~LfKLaian  266 (297)
T COG4785         258 ALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHH
Confidence            777766653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=1.6e-09  Score=88.54  Aligned_cols=106  Identities=15%  Similarity=0.169  Sum_probs=96.6

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY  272 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  272 (436)
                      ..++.+|..+...|++++|+..|++++..+|++   ..+++.+|.++...|++++|+.+|++++..+|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            467889999999999999999999999999876   5789999999999999999999999999998885   6789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          273 AKLVWELHRDQHRALTYFERAALAAPQDSNILA  305 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~  305 (436)
                      |.++...++ +++|+.+++++++..|++..+..
T Consensus        83 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        83 GMSLQELGD-KEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHhCC-hHHHHHHHHHHHHHCcCChhHHH
Confidence            999998875 99999999999999999876554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.13  E-value=1.5e-08  Score=112.05  Aligned_cols=245  Identities=15%  Similarity=0.063  Sum_probs=175.6

Q ss_pred             CCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 013821          178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGD  247 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~  247 (436)
                      +++.+..++..++...+...    ..++..+|.++...|++++|..++++++......      ..++..+|.++...|+
T Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~  546 (903)
T PRK04841        467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF  546 (903)
T ss_pred             CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence            55566666766665433222    1355677888888999999999999888753321      2456778888899999


Q ss_pred             HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013821          248 LYRAEDYYNHATMADPG--------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM  314 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~  314 (436)
                      +++|..++++++.....        ....+..+|.+++..| ++++|...+++++.....     ....+..++.++...
T Consensus       547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  625 (903)
T PRK04841        547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR  625 (903)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence            99999999988875221        2334556788888876 499999999988876332     244556678888888


Q ss_pred             cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhc
Q 013821          315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGDG----EIMSQYAKLVWELH  371 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g  371 (436)
                      |+++.|...+.+....                   ..+...|+.+.|..++.......+...    ..+..++.++...|
T Consensus       626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g  705 (903)
T PRK04841        626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG  705 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence            9888888877765432                   222345777888777766554322222    12567899999999


Q ss_pred             CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          372 HDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      + +++|+..+++++....      ....++..+|.++...|+.++|...+.+++++...
T Consensus       706 ~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        706 Q-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             C-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            9 9999999999988632      22357888999999999999999999999998643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=1.3e-08  Score=95.06  Aligned_cols=202  Identities=14%  Similarity=0.068  Sum_probs=159.5

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821          210 NFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT  288 (436)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~  288 (436)
                      ...+|..|+.+++-.+..+.+.. ..-..+|.|++..|+|++|++.|.-+...+..+.+.+.++|.+++.+|. |.+|..
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~~  112 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAKS  112 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHHH
Confidence            34788999999988886655443 6677889999999999999999999999888889999999999999986 999977


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH---HHHH-----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE---HIQV-----LPIQSKGDLEGAEEYFSRAILANPGDGEIM  360 (436)
Q Consensus       289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  360 (436)
                      ...+    .|+.+.-...+-.+-.+.++.++-+..-..   ..+.     .+.+..-.|++|++.|++++.-+|+....-
T Consensus       113 ~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN  188 (557)
T KOG3785|consen  113 IAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN  188 (557)
T ss_pred             HHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence            6555    466665555555566666666554443321   1111     556666789999999999999999998899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      .++|.||+++.- |+-+.+.+.-.++..|+...+....+..++++=+-..|....+.
T Consensus       189 Vy~ALCyyKlDY-ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~  244 (557)
T KOG3785|consen  189 VYMALCYYKLDY-YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKE  244 (557)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHH
Confidence            999999999988 99999999999999999999988888888876555555544443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.13  E-value=2.4e-09  Score=87.45  Aligned_cols=103  Identities=18%  Similarity=0.201  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAA  306 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~  306 (436)
                      ..++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...++ +++|+.+|++++...|++   ..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            455666666666666666666666666666554   3455566666555553 666666666666655553   344555


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      +|                      .++...|++++|+.+++++++..|++..
T Consensus        82 ~~----------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        82 LG----------------------MSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HH----------------------HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            55                      5555555666666666666666555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.12  E-value=4.5e-09  Score=107.50  Aligned_cols=144  Identities=16%  Similarity=0.057  Sum_probs=110.0

Q ss_pred             HhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 013821          226 DEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-------DQHRALTYFERA  293 (436)
Q Consensus       226 ~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------d~~~A~~~~~~a  293 (436)
                      ...|.+..+|  +..|.-+...++   ..+|+.+|++|++++|+++.++..++.++.....       +...+....+++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3445665544  455555555444   7789999999999999998888888877655421       134566666666


Q ss_pred             HHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821          294 ALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH  371 (436)
Q Consensus       294 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  371 (436)
                      +.+  +|.++.++..+|                      ..+...|++++|...+++|+.++| +..+|..+|.++...|
T Consensus       411 ~al~~~~~~~~~~~ala----------------------~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G  467 (517)
T PRK10153        411 VALPELNVLPRIYEILA----------------------VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG  467 (517)
T ss_pred             hhcccCcCChHHHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence            664  677777788887                      667778999999999999999998 4789999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH
Q 013821          372 HDHDKALCYFERAVQASPADSH  393 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~p~~~~  393 (436)
                      + +++|+..|++|+.++|.++.
T Consensus       468 ~-~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        468 D-NRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             C-HHHHHHHHHHHHhcCCCCch
Confidence            9 99999999999999998774

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.9e-09  Score=98.33  Aligned_cols=124  Identities=20%  Similarity=0.233  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013821          248 LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH  327 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  327 (436)
                      .++-+.-++.-+..+|+|++-|..||.+|...++ +..|...|.+++++.|++++.+..++.++....            
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------  204 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------  204 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------
Confidence            4556666777778888888888888888888775 888888888888888888888888885543322            


Q ss_pred             HHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       328 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                             ......++...+++++..+|.+..+.+.||..+++.|+ |.+|...++..+...|.+.
T Consensus       205 -------~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         205 -------GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-YAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             -------CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCCC
Confidence                   23456677888888888888888888888888888888 8888888888888776654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.11  E-value=4.3e-09  Score=92.56  Aligned_cols=85  Identities=14%  Similarity=0.155  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                      ..+.+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...++ +++|+.+|++++...|++...+..
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHH
Confidence            455778999999999999999999999999887653   4688999999888875 999999999999999999999999


Q ss_pred             HHHHHHHcc
Q 013821          307 YACFLWEME  315 (436)
Q Consensus       307 la~~~~~~g  315 (436)
                      +|.++...|
T Consensus       112 lg~~~~~~g  120 (172)
T PRK02603        112 IAVIYHKRG  120 (172)
T ss_pred             HHHHHHHcC
Confidence            995554444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.11  E-value=4.6e-10  Score=106.60  Aligned_cols=189  Identities=17%  Similarity=0.135  Sum_probs=126.0

Q ss_pred             CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY  289 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~  289 (436)
                      ++-+.++..++..+....  .++......|.++...|++++|++.+.+.     .+.+.......++...++ ++.|.+.
T Consensus        80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R-~dlA~k~  153 (290)
T PF04733_consen   80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR-PDLAEKE  153 (290)
T ss_dssp             TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC-HHHHHHH
Confidence            444555555554443321  23445556666777778888887777654     556666667777777765 8888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLV  367 (436)
Q Consensus       290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~  367 (436)
                      ++.+-+.+.+..-.....+                      ++....|  .+.+|...|++.....+.++.+++.++.+.
T Consensus       154 l~~~~~~~eD~~l~qLa~a----------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~  211 (290)
T PF04733_consen  154 LKNMQQIDEDSILTQLAEA----------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH  211 (290)
T ss_dssp             HHHHHCCSCCHHHHHHHHH----------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHH----------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            8887777666554444444                      4443333  578888888887776677788888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh-HHHHHHHHHHHhhCCCChhHH
Q 013821          368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED-EDDSKSSDQFQQVAPIRQGAV  429 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~l~p~~~~~~  429 (436)
                      ..+|+ |++|...+++++..+|.++.++.+++.+...+|+. +.+.+++.+.....|.++-..
T Consensus       212 l~~~~-~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  212 LQLGH-YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHhCC-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            88888 88888888888888888888888888888888877 445567777777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.11  E-value=1.1e-09  Score=84.11  Aligned_cols=99  Identities=23%  Similarity=0.289  Sum_probs=91.5

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  279 (436)
                      .+..+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 013821          280 HRDQHRALTYFERAALAAPQ  299 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~  299 (436)
                      ++ +++|...++++++..|.
T Consensus        82 ~~-~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GK-YEEALEAYEKALELDPN  100 (100)
T ss_pred             Hh-HHHHHHHHHHHHccCCC
Confidence            75 99999999999988763

>PRK11906 transcriptional regulator; Provisional

Probab=99.10  E-value=4.5e-09  Score=102.72  Aligned_cols=161  Identities=9%  Similarity=-0.001  Sum_probs=134.5

Q ss_pred             hhHHhhhhhCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 013821          202 EVVDLIMPNFD---DSAEAEEYYKRMI---DEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDG  266 (436)
Q Consensus       202 ~~lg~~~~~~g---~~~~A~~~~~~al---~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  266 (436)
                      +..|...+..+   ..+.|+.+|.+++   +++|+.+.+|..++.|+...         .+..+|.+..++|++++|.|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            44454443333   3568999999999   99999999999999998753         245689999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF  346 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~  346 (436)
                      .++..+|.+++..++ ++.|+..|++|+.++|+.+.+|+..|                      ++..-.|+.++|.+.+
T Consensus       339 ~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~----------------------~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        339 KILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRA----------------------LVHFHNEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHH----------------------HHHHHcCCHHHHHHHH
Confidence            999999999999986 99999999999999999999999999                      8899999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 013821          347 SRAILANPGDGEIMSQYAKL-VWELHHDHDKALCYFERAVQ  386 (436)
Q Consensus       347 ~~al~~~p~~~~~~~~la~~-~~~~g~d~~eA~~~~~~al~  386 (436)
                      +++++++|.-..+-...-++ .+.... .++|+..|-+--+
T Consensus       396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  435 (458)
T PRK11906        396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE  435 (458)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence            99999999876554444444 444456 7999998876443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.10  E-value=1.8e-08  Score=91.09  Aligned_cols=166  Identities=15%  Similarity=0.111  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS---NIL  304 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~  304 (436)
                      .+..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..+ ++++|+..|++.++..|+++   .++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            45789999999999999999999999999998874   678999999999987 59999999999999999864   567


Q ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHhH---HHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHH
Q 013821          305 AAYACFLWEMEDDGEDDKAQEEHIQVLP---IQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYA  364 (436)
Q Consensus       305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la  364 (436)
                      +.+|.++.....              ..   ...++...+|+..|+..+...|++..                 --+.+|
T Consensus        83 Y~~g~~~~~~~~--------------~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   83 YMLGLSYYKQIP--------------GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             HHHHHHHHHHHH--------------HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc--------------cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777866554321              22   44556678899999999999998632                 224567


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHH
Q 013821          365 KLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       365 ~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~  412 (436)
                      ..|.+.|. +..|+..++.+++..|+..   .++..++..+.++|..+.|.
T Consensus       149 ~~Y~~~~~-y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  149 RFYYKRGK-YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHCTT--HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHccc-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            88899999 9999999999999999976   67889999999999988553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=2.1e-09  Score=82.57  Aligned_cols=93  Identities=17%  Similarity=0.301  Sum_probs=88.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                      .++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+|++++...|.+..++..++.++...|++++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE   86 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence            778889999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 013821          411 DSKSSDQFQQVAPI  424 (436)
Q Consensus       411 A~~~~~~al~l~p~  424 (436)
                      |...+.+++...|.
T Consensus        87 a~~~~~~~~~~~~~  100 (100)
T cd00189          87 ALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHccCCC
Confidence            99999999988763

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.08  E-value=1.1e-07  Score=84.97  Aligned_cols=203  Identities=23%  Similarity=0.290  Sum_probs=174.2

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMID--EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK-  274 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-  274 (436)
                      .......+..+...+++..+...+...+.  ..+.....+...+..+...+++..++..+.+++...+.........+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            45677778888889999999999999997  678888999999999999999999999999999988887555555555 


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821          275 LVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  351 (436)
                      ++...+. ++.|...|.+++...|.   .......++                      ..+...++++.|+..+.+++.
T Consensus       139 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         139 ALYELGD-YEEALELYEKALELDPELNELAEALLALG----------------------ALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHcCC-HHHHHHHHHHHHhcCCCccchHHHHHHhh----------------------hHHHHhcCHHHHHHHHHHHHh
Confidence            6777764 99999999999887773   344444444                      556778999999999999999


Q ss_pred             hCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          352 ANPG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       352 ~~p~-~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      ..+. ....+..++.++...+. +.+|+..+.+++...|.....+..++..+...+..+++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGK-YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHccc-HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999 79999999999999998 999999999999999987778888888888888899999999999998876

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=3.7e-08  Score=95.24  Aligned_cols=54  Identities=13%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      .++++ ++....+|++.|+..|.+..+|..+|.+-..+|+.+.|...|+-|+..+
T Consensus       448 lqL~e-fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  448 LQLRE-FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHhh-HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            45566 8888888888888899988999999999999999999999998887754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.07  E-value=7.8e-10  Score=81.45  Aligned_cols=68  Identities=25%  Similarity=0.396  Sum_probs=38.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP  298 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p  298 (436)
                      ++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+++++.+|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555555555555555555555555555555555555555555555554125555555555555554

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.07  E-value=6.1e-08  Score=89.87  Aligned_cols=181  Identities=13%  Similarity=0.040  Sum_probs=137.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 013821          230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES---WMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNI  303 (436)
Q Consensus       230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~  303 (436)
                      ..+..++..|..+...|+|++|++.|++++...|..+.+   .+.+|.+++..+ ++++|+..|++.++.+|++   ..+
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCcCCCchHHH
Confidence            356778899999999999999999999999999987655   489999999987 5999999999999999886   456


Q ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHH-hHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHH
Q 013821          304 LAAYACFLWEMEDDGEDDKAQEEHIQV-LPIQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYAK  365 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~  365 (436)
                      ++.+|.+....+..     .+..+... .....+....+|+..|++.++..|+..-                 --+.+|.
T Consensus       109 ~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~  183 (243)
T PRK10866        109 LYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE  183 (243)
T ss_pred             HHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777554333210     00000000 0111122245688889999999887532                 2246677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          366 LVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       366 ~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      .|++.|. |..|+.-++.+++..|+.+   +++..+...|..+|..++|.+....
T Consensus       184 ~Y~~~~~-y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        184 YYTKRGA-YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHcCc-hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            8899999 9999999999999998754   7889999999999999999876543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=5.6e-09  Score=91.44  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHH
Q 013821          248 LYRAEDYYNHATMADPGD--GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      +..+...+...++.++.+  ...++.+|.++...+. +++|+..|++++.+.|+.   +.++.++|              
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~~lg--------------   79 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDPYDRSYILYNIG--------------   79 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccchhhHHHHHHHH--------------
Confidence            445555554444444444  5566778877777764 888888888888876653   34677777              


Q ss_pred             HHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhcCCHH-------HHHHHHHHHHHhC
Q 013821          323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW-------ELHHDHD-------KALCYFERAVQAS  388 (436)
Q Consensus       323 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~d~~-------eA~~~~~~al~~~  388 (436)
                              .++...|++++|+.+|++++.++|.....+.++|.++.       .+|+ ++       +|+.+|++++..+
T Consensus        80 --------~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a~~~~  150 (168)
T CHL00033         80 --------LIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQAIALA  150 (168)
T ss_pred             --------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHHHHhC
Confidence                    77888888888888888888888888888888888887       5555 55       4444455555566


Q ss_pred             CCC
Q 013821          389 PAD  391 (436)
Q Consensus       389 p~~  391 (436)
                      |.+
T Consensus       151 p~~  153 (168)
T CHL00033        151 PGN  153 (168)
T ss_pred             ccc
Confidence            653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.06  E-value=7.9e-10  Score=81.43  Aligned_cols=68  Identities=13%  Similarity=0.284  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCC
Q 013821          355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE-EDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       355 ~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~p  423 (436)
                      +++.+|..+|.+++..|+ +++|+.+|+++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            357899999999999999 999999999999999999999999999999999 79999999999999987

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.05  E-value=1.2e-08  Score=97.10  Aligned_cols=185  Identities=18%  Similarity=0.193  Sum_probs=125.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHcCCHHHH
Q 013821          213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      ++++|..+|+++              |.+|...+++++|.+.|.++....-  +    -...+...+.++...  ++++|
T Consensus        30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~A   93 (282)
T PF14938_consen   30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEA   93 (282)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHH
T ss_pred             CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHH
Confidence            566666666655              6667777777777777777765421  1    134455566665444  58899


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHH
Q 013821          287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPG--D----GEI  359 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~  359 (436)
                      +.+|++++.+.              ...|++..+...+...-  .+|... |++++|+++|++|+++...  .    ..+
T Consensus        94 i~~~~~A~~~y--------------~~~G~~~~aA~~~~~lA--~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~  157 (282)
T PF14938_consen   94 IECYEKAIEIY--------------REAGRFSQAAKCLKELA--EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC  157 (282)
T ss_dssp             HHHHHHHHHHH--------------HHCT-HHHHHHHHHHHH--HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHH--------------HhcCcHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence            99999887653              22333333322222222  778787 9999999999999987321  1    457


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          360 MSQYAKLVWELHHDHDKALCYFERAVQASPAD------S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +..+|.++..+|+ |++|+..|++.....-++      . ..+...+.+++..|+...|.+.+++....+|.|.....
T Consensus       158 ~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E  234 (282)
T PF14938_consen  158 LLKAADLYARLGR-YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE  234 (282)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            7899999999999 999999999998754221      1 34567778899999999999999999999998877543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=9.5e-09  Score=93.93  Aligned_cols=205  Identities=13%  Similarity=0.046  Sum_probs=158.6

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT  288 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~  288 (436)
                      .+..+|++|++++.--.+..|.+-..+..+|.||+...+|..|.++|++...+.|......+..+..++..+. +.+|+.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALr   99 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALR   99 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence            5667889999999998899998888899999999999999999999999999999988888888888888876 888887


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHH-H---------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ-V---------LPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      ......+...-.......-+.+.+..+++..+..++++.-. .         -+.++.|+++.|++-|+.|++...-++-
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            76554432111223333445555666666666666664432 1         6677899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCH-------------------------HHHHHHHHHHHHCCChH
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQA----SPADS-------------------------HVLAAYACFLWETEEDE  409 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~----~p~~~-------------------------~~~~~la~~~~~~g~~~  409 (436)
                      +-++++.+.++.++ ++.|+++....++.    +|+..                         +++...+.++++.++++
T Consensus       180 lAYniALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e  258 (459)
T KOG4340|consen  180 LAYNLALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE  258 (459)
T ss_pred             hHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence            99999999999999 99999988776653    44321                         45556677889999998


Q ss_pred             HHHHHH
Q 013821          410 DDSKSS  415 (436)
Q Consensus       410 eA~~~~  415 (436)
                      .|.+.+
T Consensus       259 AA~eaL  264 (459)
T KOG4340|consen  259 AAQEAL  264 (459)
T ss_pred             HHHHHh
Confidence            886543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.04  E-value=2e-09  Score=102.25  Aligned_cols=169  Identities=19%  Similarity=0.126  Sum_probs=140.6

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ......|.++...|++++|++.+.+.     .+.++......++...++++.|.+.++.+.+.+.+..-+...-+.+...
T Consensus       103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~  177 (290)
T PF04733_consen  103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA  177 (290)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            34455667888889999999999875     5788888999999999999999999999988887776666666666666


Q ss_pred             HcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          279 LHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       279 ~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  357 (436)
                      .|+ .+.+|...|+...+..+..+..+..++                      .++..+|+|++|...+++++..+|.++
T Consensus       178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A----------------------~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLA----------------------VCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HTTTCCCHHHHHHHHHHCCS--SHHHHHHHH----------------------HHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             hCchhHHHHHHHHHHHHhccCCCHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            665 489999999998888888999999999                      899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV  394 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~  394 (436)
                      +++.+++.+...+|+..+.+.+++.+....+|+++.+
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999999994477888999988999997754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.01  E-value=1.8e-08  Score=88.55  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      ....+++.+|.++...+ ++++|+.+|+++++..|+.   ..++..+|                      .++...|+++
T Consensus        33 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~   89 (172)
T PRK02603         33 KEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMG----------------------IIYASNGEHD   89 (172)
T ss_pred             hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHH----------------------HHHHHcCCHH
Confidence            45667888888887776 4999999999999887653   45777888                      8888889999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      +|+.+|++++...|.+...+..+|.++..+|+ ...+...++.+
T Consensus        90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~a~~~~~~A  132 (172)
T PRK02603         90 KALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQDEA  132 (172)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHhHhhCHHHH
Confidence            99999999999999999999999999988877 54444444433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.00  E-value=1.8e-08  Score=103.02  Aligned_cols=152  Identities=10%  Similarity=-0.029  Sum_probs=116.5

Q ss_pred             HhCCCCHHHHHH--HHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821          260 MADPGDGESWMQ--YAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS  335 (436)
Q Consensus       260 ~~~p~~~~~~~~--la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  335 (436)
                      ..-|.+..+|-.  .|.-+....  +++.+|+.+|+++++++|++..++..++.++.....+..              ..
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--------------~~  396 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--------------LD  396 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--------------cc
Confidence            344555555433  333333221  237899999999999999999999988865533221100              00


Q ss_pred             cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013821          336 KGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK  413 (436)
Q Consensus       336 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  413 (436)
                      ..++.++....++++.+  +|.++.++..+|......|+ +++|...+++|+.++|. ..+|..+|.++...|++++|++
T Consensus       397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK-TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence            12456677777777774  77788899999999998998 99999999999999994 8899999999999999999999


Q ss_pred             HHHHHHhhCCCChh
Q 013821          414 SSDQFQQVAPIRQG  427 (436)
Q Consensus       414 ~~~~al~l~p~~~~  427 (436)
                      .|++|+.++|.++.
T Consensus       475 ~~~~A~~L~P~~pt  488 (517)
T PRK10153        475 AYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHhcCCCCch
Confidence            99999999998764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.99  E-value=2.9e-10  Score=105.46  Aligned_cols=223  Identities=11%  Similarity=0.012  Sum_probs=167.7

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      ...|+.|+++|.|++|+.+|.+++..+|.++..+.+.|.+|++..++..|...+..|+.++.....+|...+.+-..+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999888986


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEME---------DDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSR  348 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~  348 (436)
                       ..+|.+.++.++++.|++.+....++.+-.-..         .+-.|++-..+.+..    ..+...|.++.++.+|.+
T Consensus       181 -~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~  259 (536)
T KOG4648|consen  181 -NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS  259 (536)
T ss_pred             -HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence             999999999999999998877665554322110         011122222222211    566777888888888877


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       349 al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      -+....++.....+ +..+.+..+ +.+|+..+.+++..+|.........+.+---.|...++...++.++.+.|....
T Consensus       260 ~~A~~~~~~~L~~~-~~~~~KI~~-~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  260 PRATIDDSNQLRIS-DEDIDKIFN-SNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             cccccCccccCccc-HHHHHHHhh-cchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence            77666665555545 666677777 889988888888887765554444455544555666666666767666665433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.98  E-value=1.4e-09  Score=83.51  Aligned_cols=82  Identities=15%  Similarity=0.312  Sum_probs=73.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013821          335 SKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  412 (436)
                      .+|+|+.|+.+|+++++..|.  +...++.+|.++++.|+ +++|+.++++ +..++.+......+|.++.++|++++|+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            368999999999999999995  46778889999999999 9999999999 8888888899999999999999999999


Q ss_pred             HHHHHH
Q 013821          413 KSSDQF  418 (436)
Q Consensus       413 ~~~~~a  418 (436)
                      +.|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.98  E-value=3.7e-08  Score=83.99  Aligned_cols=114  Identities=13%  Similarity=0.145  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013821          282 DQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD--  356 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--  356 (436)
                      +...+...+++.++..|+.   ..+.+.++                      .++...|++++|+..|+.++...|+.  
T Consensus        26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA----------------------~~~~~~g~~~~A~~~l~~~~~~~~d~~l   83 (145)
T PF09976_consen   26 DPAKAEAAAEQLAKDYPSSPYAALAALQLA----------------------KAAYEQGDYDEAKAALEKALANAPDPEL   83 (145)
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence            5777777788888888877   44455566                      77778888888888888888877654  


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          357 -GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       357 -~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                       ..+.+.++.++...|+ +++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus        84 ~~~a~l~LA~~~~~~~~-~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   84 KPLARLRLARILLQQGQ-YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence             3577788888888888 8888888866 33334456777888888888899988888888764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.2e-08  Score=97.45  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=98.9

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---------------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG  264 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  264 (436)
                      .....|+.+++.|+|..|...|++++..-..               -..++.+++.|+.++++|.+|+....++|.++|.
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            4455689999999999999999999885321               1257899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      |..++++.|.++..++ +|+.|+..|+++++++|.|..+...+..+.
T Consensus       290 N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  290 NVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLK  335 (397)
T ss_pred             chhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            9999999999999998 599999999999999999999998888433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.1e-08  Score=95.89  Aligned_cols=146  Identities=15%  Similarity=0.093  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ......|+.|++.|+|..|...|++++..-.....             -+.++...  ..++     -..++.+++    
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-------------~~~ee~~~--~~~~-----k~~~~lNlA----  264 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-------------FDEEEQKK--AEAL-----KLACHLNLA----  264 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-------------CCHHHHHH--HHHH-----HHHHhhHHH----
Confidence            34567899999999999999999999875321100             00000000  0000     123345555    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                                        .++.++++|.+|+.++.++|.++|+|..+++..|.++..+|+ |+.|+..|++++++.|.|.
T Consensus       265 ------------------~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nk  325 (397)
T KOG0543|consen  265 ------------------ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNK  325 (397)
T ss_pred             ------------------HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcH
Confidence                              556666666666666666666666666666666666666666 6666666666666666666


Q ss_pred             HHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q 013821          393 HVLAAYACFLWETEEDEDD-SKSSDQFQQV  421 (436)
Q Consensus       393 ~~~~~la~~~~~~g~~~eA-~~~~~~al~l  421 (436)
                      .+...+..+..+..++.+. .+.|.+.+..
T Consensus       326 a~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  326 AARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6666666665555544443 4555555543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.96  E-value=1.7e-09  Score=83.05  Aligned_cols=81  Identities=21%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821          211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT  288 (436)
Q Consensus       211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~  288 (436)
                      .|++++|+.+|+++++..|.  +...++.+|.+++..|+|++|+.++++ .+.++.+....+.+|.+++.+++ +++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHH
Confidence            58999999999999999995  457788899999999999999999999 88888888999999999999986 999999


Q ss_pred             HHHHH
Q 013821          289 YFERA  293 (436)
Q Consensus       289 ~~~~a  293 (436)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.96  E-value=2e-09  Score=78.31  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD  265 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  265 (436)
                      +|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45556666666666666666666666666666666666666666666666666666666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=3.5e-08  Score=90.30  Aligned_cols=183  Identities=14%  Similarity=0.073  Sum_probs=151.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      +.+..+|.+|++.+.--.+.+|.+...+..+|.||+..+. |..|..+|++.-.+.|......+..+..++..+.+.+|+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            3567889999999999999999999999999999999985 999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          322 KAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       322 ~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      +........            .+.+..+++..+....    +.-|  +++....+.|.++++.|+ +++|++-|+.|++.
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv----eQlp~en~Ad~~in~gCllykegq-yEaAvqkFqaAlqv  173 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV----EQLPSENEADGQINLGCLLYKEGQ-YEAAVQKFQAALQV  173 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH----HhccCCCccchhccchheeecccc-HHHHHHHHHHHHhh
Confidence            877543321            3333444544444333    3334  568899999999999999 99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCChhHHh
Q 013821          388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV----APIRQGAVT  430 (436)
Q Consensus       388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l----~p~~~~~~~  430 (436)
                      ..-++-.-++++.++++.++++.|+++...+++.    .|.+.-+++
T Consensus       174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~  220 (459)
T KOG4340|consen  174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT  220 (459)
T ss_pred             cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence            9999999999999999999999999887766654    465554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.95  E-value=4e-08  Score=83.80  Aligned_cols=117  Identities=17%  Similarity=0.236  Sum_probs=98.9

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 013821          210 NFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~  283 (436)
                      ..++...+...+++.+..+|+.   ..+.+.+|.+++..|++++|+..|+.++...|+.   ..+.+.+|.++...++ +
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-Y  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-H
Confidence            4689999999999999999998   4788899999999999999999999999988665   4688899999999875 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821          284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI  350 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  350 (436)
                      ++|+..++. +.-.+-.+.++..+|                      .++...|++++|+..|++||
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~G----------------------di~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLG----------------------DIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHhC
Confidence            999999966 333344566677778                      88888888899988888874

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=4.6e-07  Score=89.99  Aligned_cols=92  Identities=16%  Similarity=0.128  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHh---------------------
Q 013821          338 DLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFE--------RAVQA---------------------  387 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~--------~al~~---------------------  387 (436)
                      .+.+|++++....+.+|.+ ..+...++.+...+|+ +..|++.+.        ...+.                     
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn-~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~  434 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN-PEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDND  434 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCc
Confidence            3555666666666666665 4556666666666666 777766666        22221                     


Q ss_pred             -------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          388 -------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       388 -------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                                         .+.....+...+.+-.+.|+.++|...+++.+...|+......
T Consensus       435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~  496 (652)
T KOG2376|consen  435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV  496 (652)
T ss_pred             cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence                               1111134456677777889999999999999998887665443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.92  E-value=5.8e-07  Score=85.61  Aligned_cols=205  Identities=17%  Similarity=0.066  Sum_probs=151.5

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+.+.+..|+.++....+...--.....+.++...|++..|..-..++++..|.++.++.....+|...|+|.+...++.
T Consensus       132 gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~  211 (400)
T COG3071         132 GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP  211 (400)
T ss_pred             ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence            35556677777777774433445666677788889999999999999999999999999999999999999999988888


Q ss_pred             HHHHhCCC------------------------------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          257 HATMADPG------------------------------------------DGESWMQYAKLVWELHRDQHRALTYFERAA  294 (436)
Q Consensus       257 ~al~~~p~------------------------------------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al  294 (436)
                      +.-+..--                                          ++.+...++.-+...+ ++++|.+..+.++
T Consensus       212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~-~~~~A~~~i~~~L  290 (400)
T COG3071         212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG-DHDEAQEIIEDAL  290 (400)
T ss_pred             HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC-ChHHHHHHHHHHH
Confidence            87654211                                          1444455665556665 5888888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      +..-+.. ....++  ....++...-++..+..++.            .++.+.+.|.+|..+|+.+++..|. ...+..
T Consensus       291 k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~  366 (400)
T COG3071         291 KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAE  366 (400)
T ss_pred             HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHH
Confidence            7653332 111111  22333444444444444444            8899999999999999999999887 788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      +|.++.++|+ ..+|...++.++..
T Consensus       367 la~~~~~~g~-~~~A~~~r~e~L~~  390 (400)
T COG3071         367 LADALDQLGE-PEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHcCC-hHHHHHHHHHHHHH
Confidence            9999999999 99999999999854

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.89  E-value=6e-09  Score=75.71  Aligned_cols=65  Identities=28%  Similarity=0.511  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS  301 (436)
Q Consensus       236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~  301 (436)
                      +.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...++ +++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCC
Confidence            4689999999999999999999999999999999999999999875 9999999999999999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.88  E-value=3e-08  Score=94.40  Aligned_cols=200  Identities=19%  Similarity=0.127  Sum_probs=140.8

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DG  266 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~  266 (436)
                      ..+...|+.+...+++++|...|.++....-  ++    ...+...+.++.+. ++++|+.+|++++.+.-  +    -+
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA  114 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4556677888888999999999999987542  11    25667777777665 99999999999998732  2    25


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      ..+..+|.+|....+++++|+++|++|+++.....      ..+..++                      .++...|+|+
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A----------------------~l~~~l~~y~  172 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA----------------------DLYARLGRYE  172 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------------------HHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH----------------------HHHHHhCCHH
Confidence            67889999988772369999999999998753221      2233444                      8888999999


Q ss_pred             HHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--CC
Q 013821          341 GAEEYFSRAILANPGD------G-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWE--TE  406 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g  406 (436)
                      +|++.|+++....-++      . ..++..+.|+...|+ +..|...+++....+|...     .....+..++-.  ..
T Consensus       173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e  251 (282)
T PF14938_consen  173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE  251 (282)
T ss_dssp             HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence            9999999998764221      1 345667778888888 9999999999999998653     444445555433  34


Q ss_pred             ChHHHHHHHHHHHhhC
Q 013821          407 EDEDDSKSSDQFQQVA  422 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~  422 (436)
                      .+.+++..|.+...++
T Consensus       252 ~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  252 AFTEAVAEYDSISRLD  267 (282)
T ss_dssp             CHHHHCHHHTTSS---
T ss_pred             HHHHHHHHHcccCccH
Confidence            5677777776655554

>PRK15331 chaperone protein SicA; Provisional

Probab=98.87  E-value=2.4e-08  Score=84.79  Aligned_cols=100  Identities=11%  Similarity=0.038  Sum_probs=91.6

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                      .-++.+|++++|...|+-+...+|.+++.|..||.++..+++ |++|+..|..+..++++++...+..|.|+..+|+.+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence            778889999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCChhHHhhh
Q 013821          411 DSKSSDQFQQVAPIRQGAVTTA  432 (436)
Q Consensus       411 A~~~~~~al~l~p~~~~~~~~a  432 (436)
                      |+..|..++.. |.+......|
T Consensus       124 A~~~f~~a~~~-~~~~~l~~~A  144 (165)
T PRK15331        124 ARQCFELVNER-TEDESLRAKA  144 (165)
T ss_pred             HHHHHHHHHhC-cchHHHHHHH
Confidence            99999999984 5555444433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.87  E-value=7.8e-07  Score=95.78  Aligned_cols=202  Identities=12%  Similarity=0.089  Sum_probs=122.2

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHH-hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMID-EYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM  270 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  270 (436)
                      +....|+..-....+.++.++|.+..++||. +++...    .+|..+-+....-|.-+.-.+.|++|.+... .-.++.
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~ 1534 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHL 1534 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHH
Confidence            3444454444444555555555555555554 222111    2233333333333344444444555444321 122344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI  350 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  350 (436)
                      .|..+|....+ +++|.++|+..++...+...+|..++                      ..+.++.+-++|...+.+||
T Consensus      1535 ~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~----------------------~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1535 KLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYA----------------------DFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             HHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHH----------------------HHHhcccHHHHHHHHHHHHH
Confidence            44445444443 55555555555555555555555555                      55666677778888888888


Q ss_pred             HhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          351 LANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       351 ~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +.-|.  +.+.....|.+.++.|+ .+.+..+|+..+..+|.-.+.|..+...-.+.|+.+.....|++++.+.
T Consensus      1592 ~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            88877  67777788888888888 7888888888888888888888888888888888888888888887763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.86  E-value=7.9e-07  Score=98.49  Aligned_cols=220  Identities=16%  Similarity=0.127  Sum_probs=162.4

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESW  269 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~  269 (436)
                      ...+|.++...|++++|..+++++++..+...     .++..+|.++...|++++|..++++++......      ..++
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~  534 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL  534 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            34467788899999999999999998655432     356778999999999999999999998764321      3456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013821          270 MQYAKLVWELHRDQHRALTYFERAALAAPQ--------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------  330 (436)
Q Consensus       270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------  330 (436)
                      ..+|.+++..| ++++|...+++++.+...        ....+..++.+++..|++++|...+.+.+..           
T Consensus       535 ~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  613 (903)
T PRK04841        535 LQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ  613 (903)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence            77888888877 599999999999886321        2334567888899999999998888765442           


Q ss_pred             ------hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH---H-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----H
Q 013821          331 ------LPIQSKGDLEGAEEYFSRAILANPGD---GEIMS---Q-YAKLVWELHHDHDKALCYFERAVQASPADS----H  393 (436)
Q Consensus       331 ------~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~---~-la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~  393 (436)
                            .++...|++++|...+.+++.+....   .....   . ....+...|+ .+.|..++.......+...    .
T Consensus       614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~  692 (903)
T PRK04841        614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD-KEAAANWLRQAPKPEFANNHFLQG  692 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC-HHHHHHHHHhcCCCCCccchhHHH
Confidence                  57778899999999999997764321   11111   1 1233344666 8888888777654332222    2


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          394 VLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       394 ~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      .+..++.++...|++++|+..+.+++...
T Consensus       693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~  721 (903)
T PRK04841        693 QWRNIARAQILLGQFDEAEIILEELNENA  721 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            25678999999999999999999998864

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.85  E-value=1.6e-07  Score=87.76  Aligned_cols=61  Identities=16%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      .+|+..|++++|+..|++++...|+   .+++++.+|.++..+|+ +++|+..|+++++..|+..
T Consensus       188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-TAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCH
Confidence            4444455555555555555554443   24445555555555555 5555555555555555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.85  E-value=9.5e-08  Score=89.32  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETE  406 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g  406 (436)
                      ....|+|++|+..|+..++..|++   +.+++.+|.+|+..|+ +++|+..|++++...|++   +++++.+|.++..+|
T Consensus       153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g  231 (263)
T PRK10803        153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG  231 (263)
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence            356799999999999999999998   5899999999999999 999999999999998875   588999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCChhHHh
Q 013821          407 EDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ++++|+..|+++++..|+...+..
T Consensus       232 ~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        232 DTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCCHHHHH
Confidence            999999999999999999876544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.85  E-value=1.9e-06  Score=76.91  Aligned_cols=190  Identities=24%  Similarity=0.259  Sum_probs=167.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATM--ADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+.....+..++.++...+. +..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  114 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK-YEEA  114 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh-HHHH
Confidence            46778888899999888886  378889999999999999999999999998  788889999999999888875 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHH
Q 013821          287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL-PIQSKGDLEGAEEYFSRAILANP---GDGEIMSQ  362 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~  362 (436)
                      +..+.+++...+..........                      . ++...|+++.|...|.+++...|   .....+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  172 (291)
T COG0457         115 LELLEKALALDPDPDLAEALLA----------------------LGALYELGDYEEALELYEKALELDPELNELAEALLA  172 (291)
T ss_pred             HHHHHHHHcCCCCcchHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence            9999999999888755555555                      5 68889999999999999998777   45667777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQASPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      ++..+...++ +++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.
T Consensus       173 ~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         173 LGALLEALGR-YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             hhhHHHHhcC-HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            7777788888 99999999999999999 6899999999999999999999999999999886

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.84  E-value=1.4e-06  Score=79.11  Aligned_cols=184  Identities=15%  Similarity=0.110  Sum_probs=130.8

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQY  272 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l  272 (436)
                      .-|.+-|...++.|++++|+..|+.+...+|..+   .+.+.++.++++.+++++|+..+++-+.+.|.++   .+++..
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk  114 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK  114 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence            4455556666667999999999999999998765   7899999999999999999999999999988764   567777


Q ss_pred             HHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821          273 AKLVWELHR----D---QHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       273 a~~~~~~~~----d---~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                      |.+++..-.    |   ..+|+..|+..+...|+..-+   ...+..+--.+...+       -.+. ..|.+.|.|..|
T Consensus       115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E-------m~Ia-ryY~kr~~~~AA  186 (254)
T COG4105         115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE-------MAIA-RYYLKRGAYVAA  186 (254)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH-------HHHH-HHHHHhcChHHH
Confidence            777654422    1   257889999999999985432   222221111111111       1111 778888888888


Q ss_pred             HHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCH
Q 013821          343 EEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADS  392 (436)
Q Consensus       343 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~  392 (436)
                      +..++.+++..|+.   .+++..+..+|..+|- .++|...-. .|..+ |+..
T Consensus       187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~-vl~~N~p~s~  238 (254)
T COG4105         187 INRFEEVLENYPDTSAVREALARLEEAYYALGL-TDEAKKTAK-VLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhCC-hHHHHHHHH-HHHhcCCCCc
Confidence            88888888886654   4677778888888888 777765544 44444 4443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.83  E-value=8.5e-08  Score=81.42  Aligned_cols=97  Identities=14%  Similarity=-0.012  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      .+..+.+|.-++..|++++|..+|+-....+|.+++.|+.||.++..++. |++|+..|..+..++++++...+..|   
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~ag---  112 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTG---  112 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHH---
Confidence            34455555555556666666666655555555555555555555555443 55555555555555555555555555   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  351 (436)
                                         .++..+|+.+.|..+|+.++.
T Consensus       113 -------------------qC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        113 -------------------QCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             -------------------HHHHHhCCHHHHHHHHHHHHh
Confidence                               455555555555555555554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.79  E-value=2.2e-07  Score=91.38  Aligned_cols=117  Identities=22%  Similarity=0.198  Sum_probs=75.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013821          239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG  318 (436)
Q Consensus       239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  318 (436)
                      -.++...++++.|++.+++..+.+|+   +...++.++...++ ..+|++.+.++++..|.+...+...+          
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~-E~~AI~ll~~aL~~~p~d~~LL~~Qa----------  241 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE-EVEAIRLLNEALKENPQDSELLNLQA----------  241 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------
Confidence            34444556677777777766666654   44456666655543 56677777777766676666666666          


Q ss_pred             HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821          319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE  382 (436)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~  382 (436)
                                  ..+...++++.|+.+.++++.+.|.+...|+.|+.+|..+|+ +++|+..+.
T Consensus       242 ------------~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-~e~ALlaLN  292 (395)
T PF09295_consen  242 ------------EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-FENALLALN  292 (395)
T ss_pred             ------------HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-HHHHHHHHh
Confidence                        556666666777777777777777777777777777777766 777765554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.79  E-value=1e-06  Score=75.58  Aligned_cols=153  Identities=17%  Similarity=0.122  Sum_probs=110.4

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM-ADPGDGESWMQYAKLVWELHRDQHR  285 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~d~~~  285 (436)
                      ...+.=+.+....-..+.++..| ...-.+.+|..+...|++.+|..+|++++. +...++..+..++...+..++ +..
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~-~A~  142 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE-FAA  142 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc-HHH
Confidence            33444455666666666666666 345567788888888888888888888875 566777888888888888764 888


Q ss_pred             HHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          286 ALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY  363 (436)
Q Consensus       286 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  363 (436)
                      |...+++..+.+|.  .++....++                      +.+..+|++.+|...|+.++...|+ +.+...+
T Consensus       143 a~~tLe~l~e~~pa~r~pd~~Ll~a----------------------R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y  199 (251)
T COG4700         143 AQQTLEDLMEYNPAFRSPDGHLLFA----------------------RTLAAQGKYADAESAFEVAISYYPG-PQARIYY  199 (251)
T ss_pred             HHHHHHHHhhcCCccCCCCchHHHH----------------------HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH
Confidence            88888888887775  455666667                      7777778888888888888888777 6777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 013821          364 AKLVWELHHDHDKALCYFERAV  385 (436)
Q Consensus       364 a~~~~~~g~d~~eA~~~~~~al  385 (436)
                      +..+..+|+ .++|..-+....
T Consensus       200 ~e~La~qgr-~~ea~aq~~~v~  220 (251)
T COG4700         200 AEMLAKQGR-LREANAQYVAVV  220 (251)
T ss_pred             HHHHHHhcc-hhHHHHHHHHHH
Confidence            778888887 666665554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.79  E-value=1.7e-08  Score=73.97  Aligned_cols=66  Identities=24%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK  274 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  274 (436)
                      +..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456888888888888888888888888888888888888888888888888888888777776664

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.74  E-value=2.9e-07  Score=75.18  Aligned_cols=54  Identities=17%  Similarity=0.247  Sum_probs=26.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAV  385 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~eA~~~~~~al  385 (436)
                      ..+...|++++|+..+++++...|+   +..+...++.++...|+ +++|+..+..++
T Consensus        46 stlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-~~eAl~~~l~~l  102 (120)
T PF12688_consen   46 STLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR-PKEALEWLLEAL  102 (120)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence            4444445555555555555554444   44444445555555555 555555554444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.74  E-value=3.5e-07  Score=89.93  Aligned_cols=116  Identities=18%  Similarity=0.120  Sum_probs=101.7

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR  285 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~  285 (436)
                      .++...++++.|+.+|++..+.+|+   +...++.++...++..+|+..+.++++..|.+...+...+..+...++ ++.
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~-~~l  252 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK-YEL  252 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHH
Confidence            4555678999999999999999874   567799999999999999999999999999999999999999998875 999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821          286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~  347 (436)
                      |+++.++++.+.|.+...|+.|+                      .+|...|+++.|+..+.
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La----------------------~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLA----------------------ECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHH----------------------HHHHhcCCHHHHHHHHh
Confidence            99999999999999999999999                      66666666666665444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=3.3e-08  Score=72.37  Aligned_cols=67  Identities=22%  Similarity=0.271  Sum_probs=59.5

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      ...|++++|+..|++++..+|++..+++.+|.++...|+ +++|...+++++..+|+++.++..++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            468999999999999999999999999999999999999 9999999999999999988877777653

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.71  E-value=3.9e-06  Score=84.26  Aligned_cols=47  Identities=9%  Similarity=-0.072  Sum_probs=39.7

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE  227 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  227 (436)
                      +.+.....|+..-.-..|--|..|+..|.+.|.+++|...|++++..
T Consensus       231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~  277 (835)
T KOG2047|consen  231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT  277 (835)
T ss_pred             CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            66777787877666456788999999999999999999999999874

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.70  E-value=1.5e-06  Score=81.70  Aligned_cols=221  Identities=15%  Similarity=0.090  Sum_probs=133.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH-----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE  267 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  267 (436)
                      .++.+++..+.+..++.+++.+-+..+......     ..+...+|.++.-++.++++++.|++|+.+.-++      -.
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            345555555555555666665555555432211     1444556666666666666666666666542221      23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQ----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      ++..+|.++..+. |+++|+-+..+|.++-..          ...+++.++..+..+|....|.+..+++.+.       
T Consensus       164 vcv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  164 VCVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             hhhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            5555665555554 466666666666554321          1234455566666666666666655544443       


Q ss_pred             -----------hHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhC
Q 013821          331 -----------LPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHD-----KALCYFERAVQAS  388 (436)
Q Consensus       331 -----------~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~-----eA~~~~~~al~~~  388 (436)
                                 .+|...|+.+.|..-|++|+..-..      ..+++...+.++....- ..     +|++.-++++++.
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~-~~k~~~Crale~n~r~levA  321 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL-QNKICNCRALEFNTRLLEVA  321 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHH
Confidence                       8889999999999999999876321      24566666666654433 33     4888888888775


Q ss_pred             CCCH------HHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          389 PADS------HVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       389 p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      ..-.      ..+..++.+|..+|..++-...+.++-+.
T Consensus       322 ~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  322 SSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            4422      67788999999999888877777665543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=1e-07  Score=70.86  Aligned_cols=68  Identities=25%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA  273 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  273 (436)
                      .++...+++++|++++++++..+|+++..|..+|.++..+|++++|++.|+++++..|+++.+...++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            45566666777777777777777766666666777777777777777777776666666665544433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.70  E-value=4.9e-07  Score=73.82  Aligned_cols=90  Identities=20%  Similarity=0.178  Sum_probs=81.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWE  404 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~  404 (436)
                      +++...|+.++|+.+|++++......   ..++..+|.++..+|+ +++|+..+++++...|+   +..+...++.++..
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            88999999999999999999986544   5689999999999999 99999999999999898   77788889999999


Q ss_pred             CCChHHHHHHHHHHHhh
Q 013821          405 TEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       405 ~g~~~eA~~~~~~al~l  421 (436)
                      .|+.++|+..+-.++.-
T Consensus        88 ~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   88 LGRPKEALEWLLEALAE  104 (120)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887753

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=2.8e-07  Score=79.86  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=97.2

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK  274 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  274 (436)
                      ....-|+-++..|+|++|..-|..+|+.-|...     ..|.+.|.++.+++.++.|++.+.++++++|.+..++...|.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            345567888999999999999999999988654     568899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +|..+.+ |++|++.|++.++.+|....+....+
T Consensus       177 ayek~ek-~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  177 AYEKMEK-YEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHhhhh-HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            9999976 99999999999999999877766555

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.67  E-value=5.4e-08  Score=90.58  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      +...|+-|+++|.|++|+.+|.+++..+|.++..+.+.|.+|+++.+ |..|...+..|+.++.....+|...+      
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd~~Y~KAYSRR~------  172 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALDKLYVKAYSRRM------  172 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhhHHHHHHHHHHH------
Confidence            56789999999999999999999999999999999999999999987 99999999999999988888888888      


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                                      .+...+|...+|.+.++.+|++.|++.+..-.++.+
T Consensus       173 ----------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  173 ----------------QARESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             ----------------HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence                            777788899999999999999999877766555543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=2.2e-07  Score=80.49  Aligned_cols=99  Identities=19%  Similarity=0.230  Sum_probs=91.3

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDG-----EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                      .-++..|+|++|...|..||.+.|...     ..|.+.|.++++++. ++.|+..+.++++++|.+..++...+.+|.++
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            667889999999999999999998753     467889999999999 99999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCChhHHh
Q 013821          406 EEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       406 g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ..+++|++-|+++++++|..+.+..
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~  206 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREARE  206 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHH
Confidence            9999999999999999998876554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.65  E-value=5.4e-06  Score=71.24  Aligned_cols=161  Identities=18%  Similarity=0.144  Sum_probs=129.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCch
Q 013821          240 QLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL-AAPQDSNILAAYACFLWEMEDDG  318 (436)
Q Consensus       240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~  318 (436)
                      ....++=+++.+..-..+.+...|... -.+.+|..+.+.|+ +.+|...|++++. +..+++..+..++          
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr-~~EA~~hy~qalsG~fA~d~a~lLglA----------  131 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGR-YHEAVPHYQQALSGIFAHDAAMLLGLA----------  131 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhh-hhhhHHHHHHHhccccCCCHHHHHHHH----------
Confidence            334444455556555566666666543 45778989999986 9999999999986 4577888999999          


Q ss_pred             HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                                  ...+..+++..|...+++..+.+|.  .++....+|+++..+|+ +.+|...|+.++...|+ +.+..
T Consensus       132 ------------~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg-~~ar~  197 (251)
T COG4700         132 ------------QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPG-PQARI  197 (251)
T ss_pred             ------------HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCC-HHHHH
Confidence                        8888899999999999999999885  57788999999999999 99999999999999998 78889


Q ss_pred             HHHHHHHHCCChHHHHHHHHHH----HhhCCCCh
Q 013821          397 AYACFLWETEEDEDDSKSSDQF----QQVAPIRQ  426 (436)
Q Consensus       397 ~la~~~~~~g~~~eA~~~~~~a----l~l~p~~~  426 (436)
                      .++..+.++|+.++|...+..+    ..-.|+|.
T Consensus       198 ~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r  231 (251)
T COG4700         198 YYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR  231 (251)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence            9999999999988877665543    34445543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.62  E-value=2.8e-07  Score=68.42  Aligned_cols=68  Identities=32%  Similarity=0.370  Sum_probs=60.5

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA  399 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la  399 (436)
                      .+|...++|++|++++++++.++|+++..|..+|.++..+|+ +.+|+..|+++++..|+++.+....+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            577889999999999999999999999999999999999999 99999999999999998887665554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.57  E-value=2e-05  Score=82.10  Aligned_cols=112  Identities=14%  Similarity=0.046  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE  291 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~  291 (436)
                      +++.+|+....+.++..|+..-+....|.++.++|+.++|...++..-...+++...+-.+-.+|..+++ +++|..+|+
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~Ye  101 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHLYE  101 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHHHH
Confidence            5666666666666666666666666666666666666666655555555555566666666666666654 666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      +++..+|. ...+..+-.++.+.+.+.+..++.-
T Consensus       102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~  134 (932)
T KOG2053|consen  102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKAAL  134 (932)
T ss_pred             HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666 5555556666666655544444333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.56  E-value=8.2e-07  Score=76.20  Aligned_cols=106  Identities=23%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      |+.|.+.++.....+|.+.+.++++|.++..+.++....            ....-+++|+.-|++||.++|+..+++++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~------------es~~miedAisK~eeAL~I~P~~hdAlw~   74 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP------------ESKKMIEDAISKFEEALKINPNKHDALWC   74 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH------------HHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc------------hHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            678888888888889999998888888877765432211            12245688999999999999999999999


Q ss_pred             HHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          363 YAKLVWELHH----------DHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       363 la~~~~~~g~----------d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      +|.++..++.          -|++|..+|++|+..+|++......|..
T Consensus        75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9999976653          1678899999999999998766555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.56  E-value=3.1e-06  Score=74.45  Aligned_cols=175  Identities=17%  Similarity=0.114  Sum_probs=126.1

Q ss_pred             HHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          184 MYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP  263 (436)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  263 (436)
                      .-+..++++.| +.+.++.-+|..+...|+++.|.+.|+..++++|.+.-++.+.|..++--|++.-|.+.+.+-.+.+|
T Consensus        86 ~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~  164 (297)
T COG4785          86 NDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP  164 (297)
T ss_pred             hhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence            33788899999 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821          264 GDGESWMQYAKLVWELHRDQHRALTYFE-RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                      ++|.--..+-..  +..-|+.+|...+. ++...+.+   .| ..-                      .+-+-.|+..+ 
T Consensus       165 ~DPfR~LWLYl~--E~k~dP~~A~tnL~qR~~~~d~e---~W-G~~----------------------iV~~yLgkiS~-  215 (297)
T COG4785         165 NDPFRSLWLYLN--EQKLDPKQAKTNLKQRAEKSDKE---QW-GWN----------------------IVEFYLGKISE-  215 (297)
T ss_pred             CChHHHHHHHHH--HhhCCHHHHHHHHHHHHHhccHh---hh-hHH----------------------HHHHHHhhccH-
Confidence            998543333222  22235777766553 33333322   11 111                      11111222211 


Q ss_pred             HHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          343 EEYFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       343 ~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                      ...++++.....++       .++++.+|..+...|+ .++|...|+-++..+-
T Consensus       216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~-~~~A~~LfKLaiannV  268 (297)
T COG4785         216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD-LDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhH
Confidence            12223333222222       4689999999999999 9999999999987653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=3.4e-07  Score=89.68  Aligned_cols=73  Identities=16%  Similarity=0.106  Sum_probs=65.6

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhh-CCCC
Q 013821          352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV---LAAYACFLWETEEDEDDSKSSDQFQQV-APIR  425 (436)
Q Consensus       352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~  425 (436)
                      .+|+++.+|+++|.+|+.+|+ |++|+..|+++++++|++..+   |+++|.+|..+|+.++|++.+++++++ ++.|
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f  146 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF  146 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence            368899999999999999999 999999999999999998854   999999999999999999999999997 4444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.51  E-value=2e-05  Score=85.38  Aligned_cols=197  Identities=11%  Similarity=0.133  Sum_probs=160.6

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..|+.+=++....|.-+.-.+.|++|.+... -..+|..|..+|...+++++|.++|+..++...+...+|..+|..++.
T Consensus      1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred             HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            4566666666666888888999999998753 347889999999999999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          279 LHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                      ... -+.|...+++|++.-|.  +.+.....+                      .+.++.|+.+.+...|+..+..+|.-
T Consensus      1577 ~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfA----------------------qLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1577 QNE-AEAARELLKRALKSLPKQEHVEFISKFA----------------------QLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred             ccH-HHHHHHHHHHHHhhcchhhhHHHHHHHH----------------------HHHhhcCCchhhHHHHHHHHhhCccc
Confidence            864 78999999999999998  777777777                      88889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHh
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PADSHVLAA-YACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      .++|.-+...-.+.|+ .+-+..+|++++.+.  |......+. +-..-.+.|+-......-.+|.+
T Consensus      1634 tDlW~VYid~eik~~~-~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGD-IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred             hhHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            9999999999999999 899999999999875  443333333 33333344665555444444544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.50  E-value=0.00011  Score=70.15  Aligned_cols=215  Identities=18%  Similarity=0.074  Sum_probs=173.1

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DPGD---GESWMQYAKLVWEL  279 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~---~~~~~~la~~~~~~  279 (436)
                      .-..+.|+.+.|+.|-+++....|.-+.++...-......|+|+.|++..+.....   .++.   ..+-..-+......
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            34457899999999999999999999999988888899999999999999877653   3322   22333334444444


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------hHHHHcCCHHHHHHHHHHH---
Q 013821          280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------LPIQSKGDLEGAEEYFSRA---  349 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~g~~~~A~~~~~~a---  349 (436)
                      .-|...|...-.+++++.|+...+-..-+..+.+.|+..++-.+++..++.       .+|....--+.++.-++++   
T Consensus       242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L  321 (531)
T COG3898         242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL  321 (531)
T ss_pred             cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            557899999999999999999999999999999999999999999998887       4555444444455555554   


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhC
Q 013821          350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW-ETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       350 l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~l~  422 (436)
                      ..+.|++.+....++..-..-|+ +..|...-+.+....|. ..++..|+.+-. +.|+..+....+.+++.-+
T Consensus       322 ~slk~nnaes~~~va~aAlda~e-~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGE-FSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccc-hHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            45579999999999999999999 99999999999999998 456677777754 4599999999999999865

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.48  E-value=4.1e-06  Score=76.83  Aligned_cols=107  Identities=17%  Similarity=0.141  Sum_probs=96.1

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAK  274 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  274 (436)
                      .++.+.-++..|+|..|+..|..-++..|+..   .+++.||.+++.+|+|++|...|..+++..|+   -+++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            67777788888999999999999999999764   89999999999999999999999999998776   4789999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      ++..+++ .++|...|+++++..|+...+.....
T Consensus       224 ~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         224 SLGRLGN-TDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             HHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            9999986 99999999999999999887765443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2.9e-05  Score=70.49  Aligned_cols=159  Identities=19%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cC
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HR  281 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~  281 (436)
                      +.+++..|++++|+....+.     .+.++...-..++.++.+.+-|...++++.+++.+.  ++..||..+...   +.
T Consensus       115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge  187 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE  187 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch
Confidence            34555555555555554442     233444444455555555555555555555444332  111122221111   11


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      .+.+|.-+|+..-+..|-.+..+..++                      .+...+|+|++|...++.+|..++++++++.
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~A----------------------v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQA----------------------VCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            244555555555554444444444444                      4555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          362 QYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      |+..+-...|.|.+--.+.+.+....+|.++
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            5555555555533333344444444455443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.47  E-value=9.3e-07  Score=86.65  Aligned_cols=70  Identities=21%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcC
Q 013821          296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI---MSQYAKLVWELHH  372 (436)
Q Consensus       296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~  372 (436)
                      .+|+++.+++++|                      .+|..+|+|++|+.+|+++|+++|++.++   |+++|.+|..+|+
T Consensus        70 ~dP~~a~a~~NLG----------------------~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr  127 (453)
T PLN03098         70 ADVKTAEDAVNLG----------------------LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE  127 (453)
T ss_pred             CCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC
Confidence            4688999999999                      89999999999999999999999999865   9999999999999


Q ss_pred             CHHHHHHHHHHHHHhC
Q 013821          373 DHDKALCYFERAVQAS  388 (436)
Q Consensus       373 d~~eA~~~~~~al~~~  388 (436)
                       +++|+.++++|+++.
T Consensus       128 -~dEAla~LrrALels  142 (453)
T PLN03098        128 -GKKAADCLRTALRDY  142 (453)
T ss_pred             -HHHHHHHHHHHHHhc
Confidence             999999999999983

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.47  E-value=3.9e-06  Score=67.89  Aligned_cols=96  Identities=16%  Similarity=0.224  Sum_probs=87.6

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETE  406 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g  406 (436)
                      ..+...|+.+.|++.|.++|.+.|..+.+|++.+.++.-+|+ .++|+..+++++++..+..    .++...|.+|..+|
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD-DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            777889999999999999999999999999999999999999 8999999999999976544    67788999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCChh
Q 013821          407 EDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~p~~~~  427 (436)
                      +.+.|..-|+.+.++-..|..
T Consensus       130 ~dd~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             chHHHHHhHHHHHHhCCHHHH
Confidence            999999999999998766544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=8.2e-05  Score=67.65  Aligned_cols=201  Identities=13%  Similarity=0.085  Sum_probs=143.9

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHh-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDE-YP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +...++.++..-++-+.-+.-+.+.+.. .- .+...+..-|.+|...|++++|+....+.     .+.++...--.++.
T Consensus        74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~l  148 (299)
T KOG3081|consen   74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILL  148 (299)
T ss_pred             HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHH
Confidence            3333444444445545544444444433 22 23355666778889999999999887763     34445555556777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  357 (436)
                      ++.+ ++-|.+.+++..+++.+..  +..|+..+..                  +....+.+..|.-+|+..-+..|-.+
T Consensus       149 k~~r-~d~A~~~lk~mq~ided~t--LtQLA~awv~------------------la~ggek~qdAfyifeE~s~k~~~T~  207 (299)
T KOG3081|consen  149 KMHR-FDLAEKELKKMQQIDEDAT--LTQLAQAWVK------------------LATGGEKIQDAFYIFEELSEKTPPTP  207 (299)
T ss_pred             HHHH-HHHHHHHHHHHHccchHHH--HHHHHHHHHH------------------HhccchhhhhHHHHHHHHhcccCCCh
Confidence            7776 9999999999988876543  3334433221                  11234568999999999988777779


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHhhCCCChh
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK-SSDQFQQVAPIRQG  427 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~l~p~~~~  427 (436)
                      ..+...+.|...+|+ |++|...++.+|..++.+++.+.++..+-..+|...++.. ...+.....|.+.-
T Consensus       208 ~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  208 LLLNGQAVCHLQLGR-YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHccHHHHHHHhcC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            999999999999999 9999999999999999999999999999999999877665 44555556666543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.46  E-value=7.1e-05  Score=68.15  Aligned_cols=178  Identities=16%  Similarity=0.117  Sum_probs=137.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---IL  304 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~  304 (436)
                      -+..|+.-|...++.|++++|+..|+.+....|..   ..+...++.++++.+ ++++|+...++-+.+.|.++.   ++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            35788999999999999999999999999988765   578889999999887 599999999999999998654   34


Q ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHH
Q 013821          305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-----------------EIMSQYAKLV  367 (436)
Q Consensus       305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~  367 (436)
                      +..|..+...-+              .....+.-..+|+..|+..+...|+..                 .-=..+|..|
T Consensus       112 YlkgLs~~~~i~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY  177 (254)
T COG4105         112 YLKGLSYFFQID--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY  177 (254)
T ss_pred             HHHHHHHhccCC--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445533322211              223334445678888889999888752                 1124567788


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCC
Q 013821          368 WELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQV-APIR  425 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~  425 (436)
                      .+.|. +-.|+..++.+++..|+..   +++..+..+|..+|-.++|.+. .+++.. .|+.
T Consensus       178 ~kr~~-~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s  237 (254)
T COG4105         178 LKRGA-YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS  237 (254)
T ss_pred             HHhcC-hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence            89999 9999999999999877654   7888889999999999999776 445554 3544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.46  E-value=2.6e-06  Score=73.14  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      +++|+.-|++||.++|+..++++++|.++..++....           ..-.....|++|..+|++|...+|.+...+..
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~-----------d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP-----------DTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            5677778888888888888888888877776553211           11122345889999999999999998766655


Q ss_pred             HHHH
Q 013821          363 YAKL  366 (436)
Q Consensus       363 la~~  366 (436)
                      |..+
T Consensus       120 Le~~  123 (186)
T PF06552_consen  120 LEMA  123 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.45  E-value=1.1e-05  Score=76.01  Aligned_cols=198  Identities=14%  Similarity=0.057  Sum_probs=137.7

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHH----hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMID----EYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESW  269 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~  269 (436)
                      ++.+..+..+.|.|++++.+---.++    .+...  -.++.+++..+.+..++.+++.+-+-.+.+-...     ..+.
T Consensus        46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~  125 (518)
T KOG1941|consen   46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS  125 (518)
T ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence            33344466677777766655433333    22111  2567777777777777777777777666653222     3566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821          270 MQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE  343 (436)
Q Consensus       270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~  343 (436)
                      ..++..+..+++ ++++++.|++|+++..++.      .+...++                      .++.+..|+++|.
T Consensus       126 l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg----------------------slf~~l~D~~Kal  182 (518)
T KOG1941|consen  126 LSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQVCVSLG----------------------SLFAQLKDYEKAL  182 (518)
T ss_pred             hhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeeehhhhHH----------------------HHHHHHHhhhHHh
Confidence            667777777776 8888888888877754432      3445566                      7777888888888


Q ss_pred             HHHHHHHHhCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Q 013821          344 EYFSRAILANPG----------DGEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEE  407 (436)
Q Consensus       344 ~~~~~al~~~p~----------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~  407 (436)
                      -+..+|.++...          ...+++.++..+..+|+ .-.|.++++++.++.      +-.......+|.+|...|+
T Consensus       183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd  261 (518)
T KOG1941|consen  183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD  261 (518)
T ss_pred             hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc
Confidence            888888877321          13467788888999999 999999999987763      2233566788999999999


Q ss_pred             hHHHHHHHHHHHhhC
Q 013821          408 DEDDSKSSDQFQQVA  422 (436)
Q Consensus       408 ~~eA~~~~~~al~l~  422 (436)
                      .+.|..-|+++....
T Consensus       262 ~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  262 LERAFRRYEQAMGTM  276 (518)
T ss_pred             HhHHHHHHHHHHHHH
Confidence            999999999988764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.45  E-value=2.4e-05  Score=78.80  Aligned_cols=198  Identities=16%  Similarity=0.140  Sum_probs=103.4

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC----HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----------  264 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------  264 (436)
                      ..|..+|.+|...|+.+.|..+|+++++..=.    -+.+|...|..-....+++.|+...++|...-..          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            55666666666666666666666666654321    2355666666666666666666666666543111          


Q ss_pred             --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821          265 --------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK  336 (436)
Q Consensus       265 --------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  336 (436)
                              ...+|..++++....|- ++.-...|++.+++.--.+....++|.++.                      ..
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gt-festk~vYdriidLriaTPqii~NyAmfLE----------------------eh  524 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGT-FESTKAVYDRIIDLRIATPQIIINYAMFLE----------------------EH  524 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------hh
Confidence                    12345555555444443 566666666666666666666666664444                      44


Q ss_pred             CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCChHH
Q 013821          337 GDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASPADS--HVLAAYACFLWETEEDED  410 (436)
Q Consensus       337 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~e  410 (436)
                      .-++++.+.|++.+.+.  |.-.++|..+-..+.+  .|...+.|..+|++||+..|...  .++..++.+-.+.|-...
T Consensus       525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~  604 (835)
T KOG2047|consen  525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH  604 (835)
T ss_pred             HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            44555555555555553  2333344332222211  12225555566666655554211  334444555555555555


Q ss_pred             HHHHHHHHH
Q 013821          411 DSKSSDQFQ  419 (436)
Q Consensus       411 A~~~~~~al  419 (436)
                      |+..|+++-
T Consensus       605 amsiyerat  613 (835)
T KOG2047|consen  605 AMSIYERAT  613 (835)
T ss_pred             HHHHHHHHH
Confidence            555555543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.45  E-value=6.9e-06  Score=68.37  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=89.8

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQ  271 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  271 (436)
                      +..+...|.-.++.|+|.+|++.|+......|...   .+.+.+|.+|++.+++++|+..+++.++++|.+   ..+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            45666777777888999999999999999988654   889999999999999999999999999999986   467888


Q ss_pred             HHHHHHHHcC--------------CHHHHHHHHHHHHHhCCCCHHH
Q 013821          272 YAKLVWELHR--------------DQHRALTYFERAALAAPQDSNI  303 (436)
Q Consensus       272 la~~~~~~~~--------------d~~~A~~~~~~al~~~p~~~~~  303 (436)
                      .|.+++.+..              ...+|...|+++++..|+...+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            8988877641              1578999999999999987654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.43  E-value=7.8e-06  Score=77.65  Aligned_cols=134  Identities=19%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE  313 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  313 (436)
                      +|..+..+..+.+..+.|..+|.+|++..+....+|...|.+-+..++|.+.|.+.|+.+++..|.+...|..+.     
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~-----   77 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYL-----   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHH-----
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
Confidence            344444445444445555555555553333344555555555444444444455555555555555555555555     


Q ss_pred             ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                                       ..+...++.+.|...|++++..-|...   .+|..+...-...|+ .+....+.+++.+..|+
T Consensus        78 -----------------~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd-l~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   78 -----------------DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD-LESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -----------------HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTT
T ss_pred             -----------------HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhh
Confidence                             333344455555555555554433322   344444444445554 55555555555555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.41  E-value=1e-05  Score=74.26  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYA  308 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la  308 (436)
                      .++.|.-++..|+|..|...|..-++..|+.   +.++++||.+++.+++ |++|...|..+++..|+   -+++++.+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            6777778888888888888888888888874   6788888888888764 88888888888887765   457777777


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                                            .+..++|+.++|...|+++++..|+...+..
T Consensus       223 ----------------------~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         223 ----------------------VSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             ----------------------HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence                                  6667777777777777777777777655543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=6.7e-05  Score=66.90  Aligned_cols=181  Identities=15%  Similarity=0.185  Sum_probs=118.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-C-CHHHHHHHHHHHHHHcCCHH
Q 013821          211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DP-G-DGESWMQYAKLVWELHRDQH  284 (436)
Q Consensus       211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p-~-~~~~~~~la~~~~~~~~d~~  284 (436)
                      .+.+++|.++|.++-.              .|...++|..|-..|-++-..    +. . -+..+...+.+|.+.  +..
T Consensus        27 ~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~--~~~   90 (288)
T KOG1586|consen   27 SNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV--DPE   90 (288)
T ss_pred             CcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc--ChH
Confidence            3578999888887743              333344444444444444332    11 1 133445555565443  599


Q ss_pred             HHHHHHHHHHHhCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCC-
Q 013821          285 RALTYFERAALAAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGD-  356 (436)
Q Consensus       285 ~A~~~~~~al~~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~-  356 (436)
                      +|+.++++++++.-+....      +..+|                      .+|. ...++++|+.+|+++-+....+ 
T Consensus        91 eAv~cL~~aieIyt~~Grf~~aAk~~~~ia----------------------EiyEsdl~d~ekaI~~YE~Aae~yk~ee  148 (288)
T KOG1586|consen   91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIA----------------------EIYESDLQDFEKAIAHYEQAAEYYKGEE  148 (288)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhhhHH----------------------HHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence            9999999998775442221      12333                      4444 3488999999999987764432 


Q ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       357 -----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                           ...+...+..-.++++ |.+|+..|++.....-++.       ..++.-|.|++-..+.-.+...+++..+++|.
T Consensus       149 s~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  149 SVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA  227 (288)
T ss_pred             hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence                 2345556666677888 9999999999877655543       34455677777778888888889999999999


Q ss_pred             ChhHHh
Q 013821          425 RQGAVT  430 (436)
Q Consensus       425 ~~~~~~  430 (436)
                      |.+...
T Consensus       228 F~dsRE  233 (288)
T KOG1586|consen  228 FTDSRE  233 (288)
T ss_pred             ccccHH
Confidence            987654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.36  E-value=1.3e-05  Score=76.09  Aligned_cols=137  Identities=21%  Similarity=0.321  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH-cCCHHHHHHH
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS-KGDLEGAEEY  345 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~g~~~~A~~~  345 (436)
                      .+|..+.....+.+| .+.|...|.+|++..+....+|...|                      .+... .++.+.|...
T Consensus         2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A----------------------~~E~~~~~d~~~A~~I   58 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYA----------------------LMEYYCNKDPKRARKI   58 (280)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHH----------------------HHHHHTCS-HHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHH----------------------HHHHHhCCCHHHHHHH
Confidence            468888888888887 99999999999966666788898888                      66444 5777779999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      |+.+++..|.+...|..+...+...++ .+.|..+|++++..-|...   .+|..+..+-.+.|+.+...++++++.++.
T Consensus        59 fe~glk~f~~~~~~~~~Y~~~l~~~~d-~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   59 FERGLKKFPSDPDFWLEYLDFLIKLND-INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998 9999999999998877654   689999999999999999999999999998


Q ss_pred             CCChh
Q 013821          423 PIRQG  427 (436)
Q Consensus       423 p~~~~  427 (436)
                      |....
T Consensus       138 ~~~~~  142 (280)
T PF05843_consen  138 PEDNS  142 (280)
T ss_dssp             TTS-H
T ss_pred             hhhhH
Confidence            77433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.34  E-value=2e-05  Score=65.66  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=88.3

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWE  404 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~  404 (436)
                      ....+.|+|.+|++.|+.+....|..   ..+.+.++.++++.++ +++|+..+++.++++|.++   .+++..|.+++.
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-YEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            66778999999999999999998764   5789999999999999 9999999999999999876   788899999888


Q ss_pred             CCC---------------hHHHHHHHHHHHhhCCCChhHHh
Q 013821          405 TEE---------------DEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       405 ~g~---------------~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +..               ..+|...|++++...|+..-+..
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            876               88999999999999999876544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.34  E-value=3.2e-05  Score=76.15  Aligned_cols=113  Identities=16%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C--
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------------------D--  265 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------------~--  265 (436)
                      -+..+.+.-++.-++|++++|+.+++|..+|.-  ...-..+|.++|+++++....                     +  
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~  256 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN  256 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence            345777888999999999999999998888752  223356777777777664211                     0  


Q ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHH
Q 013821          266 --GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQ  324 (436)
Q Consensus       266 --~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~  324 (436)
                        ..+...+|.|.+++|+ .++|++.|+..++..|.  +..++.++..++..++.+.++..++
T Consensus       257 ~~~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhhhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence              3455678999999986 99999999999988775  5667888885555555555544444

The molecular function of this protein is uncertain.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.28  E-value=9.7e-07  Score=66.48  Aligned_cols=67  Identities=18%  Similarity=0.290  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---P-A---DSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p-~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      |+-..++.++|.++..+|+ +++|+.+|++++++.   + +   ...++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3346789999999999999 999999999999762   2 2   2467899999999999999999999999886

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.27  E-value=1.2e-06  Score=65.92  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DP----GDGESWMQYAKLVWELHRDQHRALTYFERAALA  296 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~  296 (436)
                      ..++.++|.+|..+|++++|+.+|++++++   .+    ....++.++|.++...++ +++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence            344555555555555555555555555543   11    113445555555555543 55555555555543

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.22  E-value=6.5e-05  Score=60.93  Aligned_cols=94  Identities=24%  Similarity=0.179  Sum_probs=52.0

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKLVW  277 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~  277 (436)
                      -..|..+...|+.+.|++.|.+++.+-|..+.+|.+.++.+.-+|+.++|++.+++++++....    -.++...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666666666666666666666666666666666654332    123444444444


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 013821          278 ELHRDQHRALTYFERAALA  296 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~  296 (436)
                      ..++ -+.|...|+.+.++
T Consensus       127 l~g~-dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  127 LLGN-DDAARADFEAAAQL  144 (175)
T ss_pred             HhCc-hHHHHHhHHHHHHh
Confidence            4432 45555555444443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=5.8e-06  Score=73.76  Aligned_cols=93  Identities=16%  Similarity=0.025  Sum_probs=86.1

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~  283 (436)
                      -|+.++....|..|+..|.++|.++|..+..|.+.+.|+++..+++.+.....+++++.|+....++.+|.++....+ |
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~   94 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-Y   94 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-c
Confidence            355666668899999999999999999999999999999999999999999999999999999999999999999987 9


Q ss_pred             HHHHHHHHHHHHhC
Q 013821          284 HRALTYFERAALAA  297 (436)
Q Consensus       284 ~~A~~~~~~al~~~  297 (436)
                      ++|+..++++..+.
T Consensus        95 ~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLL  108 (284)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999997664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00032  Score=63.76  Aligned_cols=144  Identities=16%  Similarity=0.188  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAA  306 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~  306 (436)
                      +.+.++.++.-.|+|.-.+..+.+.++.+ |.++.....+|.+-.+.| |.+.|..+|+++-+....      +..+..+
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G-D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG-DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            34455566666666666667777766666 446666666666665554 466666666644432211      2233334


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ  386 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~  386 (436)
                      .+                      .++.-++++..|...|.+.+..+|.++.+.++.|.|+..+|+ ...|++.++.+++
T Consensus       258 ~a----------------------~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  258 SA----------------------FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQ  314 (366)
T ss_pred             hh----------------------hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhc
Confidence            44                      778888888888888888888888888888888888888888 8888888888888


Q ss_pred             hCCCCH---HHHHHHHHH
Q 013821          387 ASPADS---HVLAAYACF  401 (436)
Q Consensus       387 ~~p~~~---~~~~~la~~  401 (436)
                      ..|...   .++.++...
T Consensus       315 ~~P~~~l~es~~~nL~tm  332 (366)
T KOG2796|consen  315 QDPRHYLHESVLFNLTTM  332 (366)
T ss_pred             cCCccchhhhHHHHHHHH
Confidence            888743   334444443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=8.1e-06  Score=72.83  Aligned_cols=91  Identities=18%  Similarity=0.125  Sum_probs=86.2

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                      ..++...+|..|+.+|.+||.++|..+..|.+.+.+++++.+ ++.+...+.+++++.|+.+..++.+|.++.....+++
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            566777899999999999999999999999999999999988 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 013821          411 DSKSSDQFQQVA  422 (436)
Q Consensus       411 A~~~~~~al~l~  422 (436)
                      |+..+.+++.+.
T Consensus        97 aI~~Lqra~sl~  108 (284)
T KOG4642|consen   97 AIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997763

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.00012  Score=68.70  Aligned_cols=158  Identities=18%  Similarity=0.042  Sum_probs=120.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 013821          238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA-APQD---SNILAAYACFLWE  313 (436)
Q Consensus       238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~  313 (436)
                      -+.+....|++.+|...+++.++..|.+..++..--.+++..|+ ...-...+++.+-. +++-   ..+.-.++     
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~Gmya-----  182 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYA-----  182 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHH-----
Confidence            34555667888888888999999999988888777777788775 77778888888776 5554   33333444     


Q ss_pred             ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Q 013821          314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---  390 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~---  390 (436)
                                       ..+...|-|++|++..++++++++.+..+...++.++...|+ +.++.+.+.+.-..-..   
T Consensus       183 -----------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~m  244 (491)
T KOG2610|consen  183 -----------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSWM  244 (491)
T ss_pred             -----------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhhH
Confidence                             667788999999999999999999999999999999998898 99999888774322111   


Q ss_pred             -CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          391 -DSHVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       391 -~~~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                       ...-|...+.++++.+.++.|+++|.+-+
T Consensus       245 lasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  245 LASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence             01345667788888899999999887643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.14  E-value=0.00022  Score=70.39  Aligned_cols=179  Identities=11%  Similarity=0.063  Sum_probs=116.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHH
Q 013821          244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGED  320 (436)
Q Consensus       244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A  320 (436)
                      +..+.++-++..++|++++|+.+.+|..||.-..   .-..+|+++|+++++.......-   ....+........-+--
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA---~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~  256 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEEEA---STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN  256 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc---cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence            3456677788889999999999999998885322   23789999999998875331110   00111000000000000


Q ss_pred             HHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Q 013821          321 DKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQA-SPADSHVLAA  397 (436)
Q Consensus       321 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-~p~~~~~~~~  397 (436)
                      .-.+.+.--..+..+.|+.++|++.++..++..|.  +..++.+|..++..++. |.++...+.+.=.+ -|....+.+.
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHH
Confidence            00000110117888999999999999999998875  56799999999999999 99999999986433 2555555555


Q ss_pred             HHHHHHH-CCC---------------hHHHHHHHHHHHhhCCCCh
Q 013821          398 YACFLWE-TEE---------------DEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       398 la~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~  426 (436)
                      -+.+..+ .++               ...|++.+++|.+.+|+-+
T Consensus       336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            5544333 122               1346788999999988744

The molecular function of this protein is uncertain.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=9.2e-05  Score=67.16  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=111.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHH
Q 013821          245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKA  323 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~  323 (436)
                      ....+..++.+++-+.      .+.+.+..++...+. |.-.+..+.++++.+ |.++.....++               
T Consensus       162 ~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lg---------------  219 (366)
T KOG2796|consen  162 GLAEESSIRLWRKRLG------RVMYSMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLG---------------  219 (366)
T ss_pred             ccchhhHHHHHHHHHH------HHHHHHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHH---------------
Confidence            3334666666666543      466777777777764 888888888888887 55777777888               


Q ss_pred             HHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          324 QEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA  397 (436)
Q Consensus       324 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~  397 (436)
                             .+..+.||.+.|..+|+++-+.+.      ...-+..+.+.++...++ +.+|...|.+.+..+|.++.+..+
T Consensus       220 -------r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn-~a~a~r~~~~i~~~D~~~~~a~Nn  291 (366)
T KOG2796|consen  220 -------RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN-FAEAHRFFTEILRMDPRNAVANNN  291 (366)
T ss_pred             -------HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc-hHHHHHHHhhccccCCCchhhhch
Confidence                   777777788888888875544422      234456666667777766 888888888888888888888888


Q ss_pred             HHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          398 YACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       398 la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      .|.|+.-+|+..+|++..++++...|.+.
T Consensus       292 KALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            88888888888888888888888877543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.07  E-value=9.4e-06  Score=53.76  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA  273 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  273 (436)
                      .++..+|.+|...|++++|++.|+++++.+|+++.+|..+|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34556666666666666666666666666666666666555

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.07  E-value=6.8e-06  Score=80.43  Aligned_cols=107  Identities=18%  Similarity=0.067  Sum_probs=99.0

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d  282 (436)
                      ..++..+..+.++.|+..|.++|+++|+++..+.+.+.++.+.+++..|+..+.+|++++|....+|+..|.++...++ 
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-   87 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-   87 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-
Confidence            3456677779999999999999999999999999999999999999999999999999999999999999999888886 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      +.+|...|++...+.|+++.+...+..+
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            9999999999999999999998777644

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.00033  Score=72.56  Aligned_cols=167  Identities=18%  Similarity=0.161  Sum_probs=111.3

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      ...+.+...+|..++|+.+|++.-..        -.+-.+|...|.+++|.+..+.--.+  .-...|+++|.-+...+ 
T Consensus       804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~-  872 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARR-  872 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhc-
Confidence            34455666778888888888877443        34556677778888877765432111  12456777777665554 


Q ss_pred             CHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcC
Q 013821          282 DQHRALTYFERA----------ALAAP----------QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKG  337 (436)
Q Consensus       282 d~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g  337 (436)
                      |.+.|+++|+++          +.-+|          .+...|..+|..+...|+.+.|+..|..+-.-    .+..-+|
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qG  952 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQG  952 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeecc
Confidence            688888888764          22233          25566677787777777777777777644332    5555567


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV  385 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al  385 (436)
                      +.++|....++     ..+-.+.+.||+.|...|+ +.+|+..|.+|-
T Consensus       953 k~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~-v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  953 KTDKAARIAEE-----SGDKAACYHLARMYENDGD-VVKAVKFFTRAQ  994 (1416)
T ss_pred             CchHHHHHHHh-----cccHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence            77777654433     4667788899999999888 999998888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.0014  Score=68.16  Aligned_cols=217  Identities=20%  Similarity=0.224  Sum_probs=142.4

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRM----------IDEYPC----------HPLLLRNYAQLLQKKGDLYRAEDYYNHA  258 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~P~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a  258 (436)
                      ..|++.+..+...++.+.|+++|+++          +..+|.          +...|...|..+...|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            56777888888889999999999874          444553          4456777888899999999999999887


Q ss_pred             HHh---------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 013821          259 TMA---------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA------PQDSNILAAYACFL  311 (436)
Q Consensus       259 l~~---------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~  311 (436)
                      -..                     ...+..+.+.+|..|...+ ++.+|+..|.+|-...      ..+. ..-.|..+.
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g-~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nla 1016 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG-DVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLA 1016 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            442                     3456778999999988887 4999999998875432      2110 111222222


Q ss_pred             HHccCch--HHHHHHHHHH---HH--hHHHHcCCHHHHHHHHHH-----HHH-----hCC-CCHHHHHHHHHHHHHhcCC
Q 013821          312 WEMEDDG--EDDKAQEEHI---QV--LPIQSKGDLEGAEEYFSR-----AIL-----ANP-GDGEIMSQYAKLVWELHHD  373 (436)
Q Consensus       312 ~~~g~~~--~A~~~~~~~~---~~--~~~~~~g~~~~A~~~~~~-----al~-----~~p-~~~~~~~~la~~~~~~g~d  373 (436)
                      ...+..+  .|.+.|++.-   ..  .+|.+.|.+.+|++..-+     +|+     ++| .++..+..-+..+....+ 
T Consensus      1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q- 1095 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ- 1095 (1416)
T ss_pred             hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH-
Confidence            3333222  2333333221   00  566666777666654322     121     234 357777777777777777 


Q ss_pred             HHHHHHHHHH------HHHhC----------------CCC---------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821          374 HDKALCYFER------AVQAS----------------PAD---------SHVLAAYACFLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       374 ~~eA~~~~~~------al~~~----------------p~~---------~~~~~~la~~~~~~g~~~eA~~~~~~a  418 (436)
                      |++|..++-.      |+++.                |..         ..++-.+|.+..++|.|..|.+-|.+|
T Consensus      1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            9988876544      44431                211         267889999999999999998888765

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.0011  Score=59.67  Aligned_cols=193  Identities=16%  Similarity=0.114  Sum_probs=122.4

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-H
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMAD-----PGDG-E  267 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~  267 (436)
                      .|..-+..+....++++|...+.++++-..++.      .++-..|.+......+.++..+|++|..+.     |+.+ .
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            333444455555999999999999997655442      445566677778899999999999998863     3333 3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE  344 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~  344 (436)
                      ++-.-|.++.. . ++++|++.|++++.+-..+..   +.-.++.+-                   +++.+...|.+|-.
T Consensus       113 aleKAak~len-v-~Pd~AlqlYqralavve~~dr~~ma~el~gk~s-------------------r~lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  113 ALEKAAKALEN-V-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCS-------------------RVLVRLEKFTEAAT  171 (308)
T ss_pred             HHHHHHHHhhc-C-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh-------------------hHhhhhHHhhHHHH
Confidence            33444444333 3 489999999999876543222   222222111                   77777788888777


Q ss_pred             HHHHHHHh----C--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821          345 YFSRAILA----N--PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----SPADSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       345 ~~~~al~~----~--p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      .+.+-...    .  +.....+.....++....+ |..|..+++...++    .+++..++.+|-..| ..|+.++..++
T Consensus       172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D-yv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv  249 (308)
T KOG1585|consen  172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD-YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV  249 (308)
T ss_pred             HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH-HHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence            66664322    2  3333344444445555556 99999999887665    355666777776655 56777776554


Q ss_pred             H
Q 013821          415 S  415 (436)
Q Consensus       415 ~  415 (436)
                      +
T Consensus       250 l  250 (308)
T KOG1585|consen  250 L  250 (308)
T ss_pred             H
Confidence            4

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=0.00061  Score=66.87  Aligned_cols=81  Identities=12%  Similarity=0.093  Sum_probs=72.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---------YP---------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~P---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      ..|.++|-+.++.|.|.-+..+|.++++.         .|         ..-+++++.|..|...|++-.|.++|.++..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            57899999999999999999999999961         12         2347899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHH
Q 013821          261 ADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~  279 (436)
                      ..-.+|..|..+|.++...
T Consensus       364 vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHhcCcHHHHHHHHHHHHH
Confidence            9999999999999987654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.00  E-value=0.00021  Score=71.46  Aligned_cols=96  Identities=13%  Similarity=0.041  Sum_probs=84.9

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE  409 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  409 (436)
                      ..+..+|+...|+.++.+|+...|... ..+.+||.++.+-|- .-.|-..+.+++.+.-..+-.++.+|..+..+.+.+
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            344567899999999999999988654 357899999999998 899999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChh
Q 013821          410 DDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       410 eA~~~~~~al~l~p~~~~  427 (436)
                      .|++.|++++.++|+...
T Consensus       694 ~a~~~~~~a~~~~~~~~~  711 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPE  711 (886)
T ss_pred             HHHHHHHHHHhcCCCChh
Confidence            999999999999988654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=5.5e-05  Score=67.86  Aligned_cols=104  Identities=20%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCH----------PLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      ......|+-+++.|+|.+|...|+.|+.        ..|..          ...+.++++|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            5667789999999999999999999875        23544          35688999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI  303 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~  303 (436)
                      .+|.+..+++..|.+....=+ .++|...|.++++++|.-..+
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999888764 899999999999999975443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.98  E-value=1.7e-05  Score=52.56  Aligned_cols=43  Identities=23%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      +.++..+|.++..+|+ +++|++.|+++++.+|+++.+|..++.
T Consensus         1 p~~~~~la~~~~~~G~-~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQ-PDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578899999999999 999999999999999999999988875

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0027  Score=56.93  Aligned_cols=169  Identities=12%  Similarity=-0.003  Sum_probs=111.5

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYP-----C-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQY  272 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P-----~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l  272 (436)
                      |+.+-...++..|-..|.++.+.+-     + -+..|...+.+|. .++.++|+..+++++++..+...      .+..+
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i  119 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI  119 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence            3344444666666666666655321     1 2345555555554 45999999999999998665433      34578


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821          273 AKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  351 (436)
                      |.+|...-.|+++|+.+|+++-+....+ .....+...+-..                 ..-...++|.+|+..|+++..
T Consensus       120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA-----------------~yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA-----------------QYAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence            8888766457999999999998876543 2222222211111                 555577899999999999887


Q ss_pred             hCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          352 ANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       352 ~~p~~~~-------~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      ..-++.-       .++.-|.|+....+ .-.+...+++..+++|...
T Consensus       183 ~s~~n~LLKys~KdyflkAgLChl~~~D-~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  183 SSLDNNLLKYSAKDYFLKAGLCHLCKAD-EVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HhccchHHHhHHHHHHHHHHHHhHhccc-HHHHHHHHHHHHhcCCccc
Confidence            7655542       23444555565556 7788888899899999865

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.92  E-value=0.0079  Score=60.95  Aligned_cols=231  Identities=14%  Similarity=0.083  Sum_probs=141.6

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGD---GESWMQY  272 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  272 (436)
                      ..+.|...+..-.+.|..+.+.+.|++++.--|-..+.|..+-..+. ..|+.+.-...|++|......+   ...|-.+
T Consensus        78 ~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky  157 (577)
T KOG1258|consen   78 CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY  157 (577)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence            34666777777777777777777777777777766666665554443 4566666666777776665443   3344444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------------HHHHHHHH-----------------
Q 013821          273 AKLVWELHRDQHRALTYFERAALAAPQDSNILA----------------------AYACFLWE-----------------  313 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~----------------------~la~~~~~-----------------  313 (436)
                      -.....++ ++..-...|++.++.--.....++                      .+..-...                 
T Consensus       158 ie~en~qk-s~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~  236 (577)
T KOG1258|consen  158 IEFENGQK-SWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIG  236 (577)
T ss_pred             HHHHhccc-cHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHH
Confidence            44433333 366667777776654221111111                      00000000                 


Q ss_pred             ---c----cCchHHHHHHHHHHHH--------------------------------------------hHHHHcCCHHHH
Q 013821          314 ---M----EDDGEDDKAQEEHIQV--------------------------------------------LPIQSKGDLEGA  342 (436)
Q Consensus       314 ---~----g~~~~A~~~~~~~~~~--------------------------------------------~~~~~~g~~~~A  342 (436)
                         .    +..+++...+.+.+..                                            ......|+++..
T Consensus       237 v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~  316 (577)
T KOG1258|consen  237 VKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV  316 (577)
T ss_pred             HhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence               0    0001111111100000                                            444567888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .-.|++++--.....+.|...+......|+ .+-|...+.++.++. |..+.++...+.+--..|++..|...+++...-
T Consensus       317 ~~l~ercli~cA~Y~efWiky~~~m~~~~~-~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e  395 (577)
T KOG1258|consen  317 FILFERCLIPCALYDEFWIKYARWMESSGD-VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE  395 (577)
T ss_pred             HHHHHHHHhHHhhhHHHHHHHHHHHHHcCc-hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence            888888887777778889988888888888 888888888887764 666777788888888888999999999988877


Q ss_pred             CCCChhHH
Q 013821          422 APIRQGAV  429 (436)
Q Consensus       422 ~p~~~~~~  429 (436)
                      .|.+-...
T Consensus       396 ~pg~v~~~  403 (577)
T KOG1258|consen  396 YPGLVEVV  403 (577)
T ss_pred             CCchhhhH
Confidence            67655443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.89  E-value=1.5e-05  Score=49.56  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=26.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013821          220 YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE  252 (436)
Q Consensus       220 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  252 (436)
                      +|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            367788888888888888888888888888775

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.88  E-value=0.012  Score=56.53  Aligned_cols=184  Identities=20%  Similarity=0.039  Sum_probs=101.8

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHH
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWEL  279 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~  279 (436)
                      .-|.+..-.|+-..|.++-.++-.+-.  ..+.++..-++.-.-.|+++.|..-|+-.+. +|+... .+..|-.- .+.
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-Aqr  166 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE-AQR  166 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH-HHh
Confidence            345555556777777777666654322  2234555556666677777777777765542 232111 11111111 112


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------------hHHHHcCCHH
Q 013821          280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------------LPIQSKGDLE  340 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~  340 (436)
                      .|+.+-|+.+-+++....|.-+=++...-...+..|+++.|+++++.....                   -.-.-.-+..
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            235677777777777777776666666666667777777777777644333                   0111123445


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                      .|...-.+++++.|+...+-..-+..++..|+ ..++-.+++.+.+..|
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~eP  294 (531)
T COG3898         247 SARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEP  294 (531)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCC
Confidence            55555555666666655555555555555555 5555555555555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.88  E-value=0.0018  Score=63.05  Aligned_cols=181  Identities=13%  Similarity=0.060  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHH-HHhCCCCHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWE---LHRDQHRALTYFERA-ALAAPQDSNI  303 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~d~~~A~~~~~~a-l~~~p~~~~~  303 (436)
                      +++..++-..|....+|+.-++..+..-.+    -++.+.+...+|.++.+   .| |.++|+..+..+ ....+.+++.
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g-dre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG-DREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHhccCCCChHH
Confidence            466677777888889999888888877666    45667777888877776   44 689999999884 4555678888


Q ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                      +-.+|.+|.+.-..             ..+......++|+.+|.++.+++|+ ...-.|++.++...|.++....+.-+-
T Consensus       220 ~gL~GRIyKD~~~~-------------s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i  285 (374)
T PF13281_consen  220 LGLLGRIYKDLFLE-------------SNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKI  285 (374)
T ss_pred             HHHHHHHHHHHHHH-------------cCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHH
Confidence            88888777653100             0011234589999999999999965 455567777777777643333222222


Q ss_pred             HHHh-----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          384 AVQA-----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       384 al~~-----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      .+.+           .-.+-+.+..++.+..-.|++++|++.+++++.+.|....
T Consensus       286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            2111           1234466778888899999999999999999998755433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=1.9e-05  Score=49.05  Aligned_cols=31  Identities=13%  Similarity=0.370  Sum_probs=15.5

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013821          381 FERAVQASPADSHVLAAYACFLWETEEDEDD  411 (436)
Q Consensus       381 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  411 (436)
                      |+++|+++|+++.+|.++|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            4444555555555555555555555555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.0002  Score=64.34  Aligned_cols=98  Identities=12%  Similarity=0.175  Sum_probs=82.9

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILA--------NPGD----------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      .-+++.|+|.+|...|+.|+..        .|.+          ...+.|++.|+...|+ |-++++.+...|..+|.+.
T Consensus       186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e-~yevleh~seiL~~~~~nv  264 (329)
T KOG0545|consen  186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE-YYEVLEHCSEILRHHPGNV  264 (329)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH-HHHHHHHHHHHHhcCCchH
Confidence            6667778888888888877654        3433          3468899999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013821          393 HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV  429 (436)
Q Consensus       393 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  429 (436)
                      .+++..|.+....-+.++|..-|.++++++|......
T Consensus       265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            9999999999999999999999999999998765443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.81  E-value=3.5e-05  Score=75.54  Aligned_cols=97  Identities=20%  Similarity=0.135  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      +|+.|+..|.+||+++|+.+..+.+.+                      .++.+.+++..|+..+.+|++++|....+|+
T Consensus        19 ~fd~avdlysKaI~ldpnca~~~anRa----------------------~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~   76 (476)
T KOG0376|consen   19 VFDVAVDLYSKAIELDPNCAIYFANRA----------------------LAHLKVESFGGALHDALKAIELDPTYIKAYV   76 (476)
T ss_pred             hHHHHHHHHHHHHhcCCcceeeechhh----------------------hhheeechhhhHHHHHHhhhhcCchhhheee
Confidence            366777777777777776666666666                      5666667777777777777777777777777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      ..|.+...+++ +.+|...|++...+.|+++.+...+..+
T Consensus        77 rrg~a~m~l~~-~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   77 RRGTAVMALGE-FKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             eccHHHHhHHH-HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            77777777777 7777777777777777776666655555

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.0092  Score=54.45  Aligned_cols=215  Identities=17%  Similarity=0.217  Sum_probs=157.0

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH-  284 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~-  284 (436)
                      ++.+...-..|+.+-..+|.++|.+-.+|...-.++.. ..+..+-++++...++.+|++-.+|...-.+....+ ++. 
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~  130 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSF  130 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Cccc
Confidence            44445667899999999999999999888888877765 456788999999999999999999999887877766 677 


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcC-----CHHHHHHHH
Q 013821          285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKG-----DLEGAEEYF  346 (436)
Q Consensus       285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g-----~~~~A~~~~  346 (436)
                      +-++..+.++..+..+..+|...-.+....+.++.-+....+.++.             .+-...|     ..+.-+.+.
T Consensus       131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt  210 (318)
T KOG0530|consen  131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT  210 (318)
T ss_pred             chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence            8899999999999999999999888888888898888888877776             0000011     234556788


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH-hc--CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH------HCCChH---HHHH
Q 013821          347 SRAILANPGDGEIMSQYAKLVWE-LH--HDHDKALCYFERAV-QASPADSHVLAAYACFLW------ETEEDE---DDSK  413 (436)
Q Consensus       347 ~~al~~~p~~~~~~~~la~~~~~-~g--~d~~eA~~~~~~al-~~~p~~~~~~~~la~~~~------~~g~~~---eA~~  413 (436)
                      .+.|.+.|++..+|..|.-++.. .|  . +..-.......+ +..-..+..+.-+..+|.      +.+..+   +|.+
T Consensus       211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s-~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~  289 (318)
T KOG0530|consen  211 KDKILLVPNNESAWNYLKGLLELDSGLSS-DSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVK  289 (318)
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhccCCcC-CchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            88999999999999999988875 33  1 233444444443 333445666655655552      223333   4666


Q ss_pred             HHHHHH-hhCC
Q 013821          414 SSDQFQ-QVAP  423 (436)
Q Consensus       414 ~~~~al-~l~p  423 (436)
                      .|+... +.+|
T Consensus       290 ly~~La~~~Dp  300 (318)
T KOG0530|consen  290 LYEDLAIKVDP  300 (318)
T ss_pred             HHHHHhhccCc
Confidence            666544 4554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.80  E-value=0.0043  Score=60.51  Aligned_cols=181  Identities=14%  Similarity=0.059  Sum_probs=123.6

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE----YPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHAT-MADPGDGESW  269 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~  269 (436)
                      ++...++=..|....+|+.-+++.+..-..    -++...+.+.+|.++.+   .|+.++|+..+..++ ...+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            345556666777789999999999887776    45667888899999998   999999999999954 5566789999


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--hHHHHcCCH
Q 013821          270 MQYAKLVWELH--------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--LPIQSKGDL  339 (436)
Q Consensus       270 ~~la~~~~~~~--------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~g~~  339 (436)
                      ..+|.+|-..-        ...++|+..|.++.+++|+ ...-.|++.++...|...+....+.+....  ..+.+.|. 
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-  298 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-  298 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-
Confidence            99999875431        1268999999999999964 344456665555555432222111111000  11111111 


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                                 .-.-.+-+.+..++.+..-.|+ +++|+.++++++.+.|...
T Consensus       299 -----------~~~~~dYWd~ATl~Ea~vL~~d-~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  299 -----------LEKMQDYWDVATLLEASVLAGD-YEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             -----------ccccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCcch
Confidence                       1122344556667777777888 9999999999999987744

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.78  E-value=0.0058  Score=63.77  Aligned_cols=242  Identities=17%  Similarity=0.089  Sum_probs=166.7

Q ss_pred             CCCChHHHHHhhcC----CCCCCchhhhhhHHhhhhhCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 013821          178 RPVSPPMYLAMGLG----ISVPGFDDAGEVVDLIMPNFD-----DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG--  246 (436)
Q Consensus       178 ~p~~a~~~~~~~~~----~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g--  246 (436)
                      ++..+..|+.++..    -...+.+.+...+|.+|.+..     ++..|+.+|.++.+..  ++.+.+.+|.++....  
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~  341 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKE  341 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCcc
Confidence            56677777777754    111134457788888888743     7788999999998874  5677889999988755  


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCchHHH
Q 013821          247 -DLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-EDDGEDD  321 (436)
Q Consensus       247 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~  321 (436)
                       ++..|.++|..|...  .+..+.+.++.||..-   .++...|..+|+++.+..  ++.+...++.++.-. +.++.+.
T Consensus       342 ~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~  417 (552)
T KOG1550|consen  342 RDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL  417 (552)
T ss_pred             ccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence             678999999988754  5678888889776542   246899999999999998  444444444333322 5555544


Q ss_pred             HHHHHHHHH---------hHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q 013821          322 KAQEEHIQV---------LPIQS-----------KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL---HHDHDKAL  378 (436)
Q Consensus       322 ~~~~~~~~~---------~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~d~~eA~  378 (436)
                      ..+......         ..+..           ..+...+...+.++.  ...+..+...+|.+|+.-   ++|+..|.
T Consensus       418 ~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d~~~a~  495 (552)
T KOG1550|consen  418 ALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAILKLGDYYYYGLGTGRDPEKAA  495 (552)
T ss_pred             HHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHhhhcceeeecCCCCCChHHHH
Confidence            444322211         11111           124455666666654  345678888899888765   56799999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHC-C--ChHHHHHHHHHHHhhCCCChhHHh
Q 013821          379 CYFERAVQASPADSHVLAAYACFLWET-E--EDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       379 ~~~~~al~~~p~~~~~~~~la~~~~~~-g--~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ..|.++....   ....+++|.++..- |  ....|..+|.++.+.......+..
T Consensus       496 ~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~~~~  547 (552)
T KOG1550|consen  496 AQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYLPVK  547 (552)
T ss_pred             HHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhhHHH
Confidence            9999998877   78899999887652 1  267899999999887766555444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.0017  Score=60.39  Aligned_cols=53  Identities=19%  Similarity=0.127  Sum_probs=42.7

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA  258 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a  258 (436)
                      .-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            34445588888888888888888888888888888888888888888776654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.76  E-value=0.013  Score=55.82  Aligned_cols=191  Identities=14%  Similarity=0.128  Sum_probs=139.8

Q ss_pred             hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---c
Q 013821          208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---H  280 (436)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~  280 (436)
                      ....+++..|...+.++....  +......++.+|..    ..+..+|..+|+  ......++.+.+.||.+|..-   .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcc
Confidence            345588999999999988733  34777888888875    556889999999  445667788999999888762   3


Q ss_pred             CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          281 RDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI  359 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  359 (436)
                      +|+.+|..+|+++.+..-.. ..+...++.++..-. .+              .....+...|..+|.++-...  ++.+
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~--------------~~~~~~~~~A~~~~~~aa~~~--~~~a  189 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA--------------LAVAYDDKKALYLYRKAAELG--NPDA  189 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh--------------hcccHHHHhHHHHHHHHHHhc--CHHH
Confidence            37999999999999886554 345677775443321 00              001113358999999988776  6889


Q ss_pred             HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHhh
Q 013821          360 MSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---------------EDEDDSKSSDQFQQV  421 (436)
Q Consensus       360 ~~~la~~~~~~---g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~eA~~~~~~al~l  421 (436)
                      ...+|.+|..-   ..|+.+|..+|.++-+...  ...++.++ ++...|               +...|...+.++...
T Consensus       190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            99999887542   2359999999999998877  78888888 777666               677778887777665


Q ss_pred             C
Q 013821          422 A  422 (436)
Q Consensus       422 ~  422 (436)
                      .
T Consensus       267 ~  267 (292)
T COG0790         267 G  267 (292)
T ss_pred             C
Confidence            4

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.75  E-value=0.004  Score=63.56  Aligned_cols=164  Identities=16%  Similarity=0.052  Sum_probs=120.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          236 RNYAQLLQKKGDLYRAEDYYNHATMADPGD-GES------WMQYAKLVWE---LHRDQHRALTYFERAALAAPQDSNILA  305 (436)
Q Consensus       236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~~---~~~d~~~A~~~~~~al~~~p~~~~~~~  305 (436)
                      ..+-.+.--.||-+.++..+.++.+...-. +.+      |+.....+..   .+.+.+.|.+.++...+..|+..-.++
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~  271 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF  271 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            344444445788899999998887732212 111      1111111111   134578999999999999999999999


Q ss_pred             HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821          306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYF  381 (436)
Q Consensus       306 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~eA~~~~  381 (436)
                      ..|                      +++...|+.++|++.|++++.....    ..-.++.+++++..+++ |++|..+|
T Consensus       272 ~~g----------------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f  328 (468)
T PF10300_consen  272 FEG----------------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYF  328 (468)
T ss_pred             HHH----------------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHH
Confidence            999                      8888899999999999998854332    23467889999999999 99999999


Q ss_pred             HHHHHhCCCCH-HHHHHHHHHHHHCCCh-------HHHHHHHHHHHhhC
Q 013821          382 ERAVQASPADS-HVLAAYACFLWETEED-------EDDSKSSDQFQQVA  422 (436)
Q Consensus       382 ~~al~~~p~~~-~~~~~la~~~~~~g~~-------~eA~~~~~~al~l~  422 (436)
                      .+.++.+.-.. ...+..|.++...|+.       ++|.++++++-.+.
T Consensus       329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            99998766533 4456678889999999       88888888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.71  E-value=0.0036  Score=60.63  Aligned_cols=162  Identities=10%  Similarity=0.096  Sum_probs=111.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGD------------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      .-|++.++.+|.+..+|..+....-..-.            .+.-+.+|++|++.+|++...+..+-.+..+.. +.++.
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l   84 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL   84 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence            45888999999999999999887765432            466788999999999999999998888887776 58889


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH-cc--CchHHHHHHHHHHHHhHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHH
Q 013821          287 LTYFERAALAAPQDSNILAAYACFLWE-ME--DDGEDDKAQEEHIQVLPIQSKGD--LEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      .+-+++++..+|++...|..+-..... ..  .+......|.+++....-...+.  .......++      ..-..++.
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e------~~~l~v~~  158 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELE------EFMLYVFL  158 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHH------HHHHHHHH
Confidence            999999999999999999887755433 11  23333444433333211111110  000000000      01134667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          362 QYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       362 ~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                      .+...+.+.|- .+.|+..++..++.+
T Consensus       159 r~~~fl~~aG~-~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  159 RLCRFLRQAGY-TERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHCCc-hHHHHHHHHHHHHHH
Confidence            77778888999 999999999999875

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.00084  Score=63.08  Aligned_cols=143  Identities=17%  Similarity=0.053  Sum_probs=118.2

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCC
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGD---GESWMQYAKLVWELHRD  282 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~d  282 (436)
                      ++...|++.+|-..+++.++..|.+..++..--.+++.+|+.+.-...+++.+-. +++.   ..+.-.++..+.+.|- 
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~-  190 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI-  190 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc-
Confidence            3444599999999999999999999988888888999999999999999999877 6665   5566667777888875 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYF  346 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~  346 (436)
                      |++|.+.-++++++++.+.=+...++.++...++..++.+.+.+.-..                .++...+.|+.|++.|
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            999999999999999999999999999999999888888877622111                5666778899999888


Q ss_pred             HHHH
Q 013821          347 SRAI  350 (436)
Q Consensus       347 ~~al  350 (436)
                      .+-+
T Consensus       271 D~ei  274 (491)
T KOG2610|consen  271 DREI  274 (491)
T ss_pred             HHHH
Confidence            8755

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.0035  Score=56.55  Aligned_cols=171  Identities=15%  Similarity=0.150  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                      ..|..-+.+|...++|++|...+.+|.+...++.      .++-..+.+...+.. +.++..+|+++..           
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k-lsEvvdl~eKAs~-----------   99 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK-LSEVVDLYEKASE-----------   99 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH-----------
Confidence            4566667788889999999999999987655442      233344444444543 7777777777754           


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY  380 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~  380 (436)
                         .|...|..+.|...++++-+   .....+.++|+..|++++.+-..+      .+.+...++++....+ +.+|-..
T Consensus       100 ---lY~E~GspdtAAmaleKAak---~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a  172 (308)
T KOG1585|consen  100 ---LYVECGSPDTAAMALEKAAK---ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATA  172 (308)
T ss_pred             ---HHHHhCCcchHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHH
Confidence               45555555555555544332   335678999999999998874432      3456677888888888 9999888


Q ss_pred             HHHHHH----h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          381 FERAVQ----A--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       381 ~~~al~----~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +.+-..    .  .++....+.....++....++..|...|+..-+++
T Consensus       173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            877432    2  24434555555666777779999999998877664

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.007  Score=56.34  Aligned_cols=163  Identities=14%  Similarity=0.059  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACF  310 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~  310 (436)
                      .+.-+..+.-....|++.+|...|..++...|++..+...++.+|...+. .+.|...+...-....+. ...+....  
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~-~e~A~~iL~~lP~~~~~~~~~~l~a~i--  210 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD-VEAAQAILAALPLQAQDKAAHGLQAQI--  210 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC-hHHHHHHHHhCcccchhhHHHHHHHHH--
Confidence            34456667777889999999999999999999999999999999999975 888777665432211111 11111111  


Q ss_pred             HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                                          .++.+.....+. ..+++.+..+|++.++.+.+|..+...|+ +++|.+.+-..+..+-.
T Consensus       211 --------------------~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         211 --------------------ELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRG  268 (304)
T ss_pred             --------------------HHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccc
Confidence                                222222222222 34566778899999999999999999999 99999999999987654


Q ss_pred             --CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          391 --DSHVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       391 --~~~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                        +..+...+-.++.-.|.-+.+...|++-+
T Consensus       269 ~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         269 FEDGEARKTLLELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             ccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence              56788888888888887777666666544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.65  E-value=0.0001  Score=45.60  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG  264 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  264 (436)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555566666666666666666666555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.63  E-value=0.017  Score=57.87  Aligned_cols=206  Identities=14%  Similarity=0.130  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcC
Q 013821          217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--------------LYRAEDYYNHATMAD-PGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  281 (436)
                      -.-.|++++..-+..+++|+..+..+...++              -+++...|++++... ..+...++.++..-....+
T Consensus       264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~  343 (656)
T KOG1914|consen  264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD  343 (656)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence            3345678888778888888888777776666              678888888888653 3344444544433211110


Q ss_pred             --CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHHHHHHH
Q 013821          282 --DQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEY  345 (436)
Q Consensus       282 --d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~  345 (436)
                        .++.--.++++++.+...+ ..++.++-.+..+..-...|+.++.++-+.             .-|...++..-|...
T Consensus       344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI  423 (656)
T KOG1914|consen  344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI  423 (656)
T ss_pred             cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence              1566667777877765443 345666777777777777777777755544             557788999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      |+-.|+..++.+.........+..+++ -..|..+|++++..  .|+ ...+|..+-..-...|+....+++-++-....
T Consensus       424 FeLGLkkf~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af  502 (656)
T KOG1914|consen  424 FELGLKKFGDSPEYVLKYLDFLSHLND-DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF  502 (656)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999 68999999999987  443 34789999999999999999888877776665


Q ss_pred             C
Q 013821          423 P  423 (436)
Q Consensus       423 p  423 (436)
                      |
T Consensus       503 ~  503 (656)
T KOG1914|consen  503 P  503 (656)
T ss_pred             c
Confidence            5

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.62  E-value=0.0019  Score=67.83  Aligned_cols=130  Identities=14%  Similarity=0.045  Sum_probs=107.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      ...+++.+|+....+.++..|+...+...-|..+.++|+ .++|..+++..-...+++...+..+.              
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~--------------   84 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQ--------------   84 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHH--------------
Confidence            356788999999999999999999999999999999987 99999888887777888877777777              


Q ss_pred             HHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA  397 (436)
Q Consensus       323 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~  397 (436)
                              .+|..++++++|..+|++++..+|. .+.++.+=.+|.+.+. |.+-.+.--+..+..|.++...+.
T Consensus        85 --------~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-yk~qQkaa~~LyK~~pk~~yyfWs  149 (932)
T KOG2053|consen   85 --------NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-YKKQQKAALQLYKNFPKRAYYFWS  149 (932)
T ss_pred             --------HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcccchHHH
Confidence                    8899999999999999999999999 7777777778877777 766555555555677777644433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.62  E-value=0.00017  Score=44.49  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG  264 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  264 (436)
                      .+|+.+|.++..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00048  Score=64.61  Aligned_cols=97  Identities=14%  Similarity=0.056  Sum_probs=85.6

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE  406 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  406 (436)
                      .-|++.++|..|+.+|.+.|+..-.    ++..|.|.|.+...+|+ |..|+..+.+++.++|.+..+++.=+.|++.+.
T Consensus        89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe  167 (390)
T KOG0551|consen   89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKLKPTHLKAYIRGAKCLLELE  167 (390)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence            7788999999999999999998543    35578899999999999 999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCChhH
Q 013821          407 EDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      ++++|+.+.+..+.++-.-..+
T Consensus       168 ~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  168 RFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999998887776443333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.57  E-value=0.00015  Score=44.84  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      .+|+++|.++..+|+ +++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGD-YEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcC
Confidence            456666666666666 66666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.55  E-value=0.043  Score=52.04  Aligned_cols=210  Identities=12%  Similarity=0.049  Sum_probs=115.4

Q ss_pred             hhCCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------
Q 013821          209 PNFDDSAEAEEYYKRMIDEY----PCH----PLLLRNYAQLLQKKG-DLYRAEDYYNHATMA----DPGD----------  265 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~----P~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~~----------  265 (436)
                      .+.|+++.|..++.|+-...    |+.    ...+++.|......+ +++.|..+++++.++    .+..          
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            34577777777777776543    222    245666777777777 777777777777766    2111          


Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------
Q 013821          266 GESWMQYAKLVWELHR--DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------  330 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------  330 (436)
                      ..++..++.++...+.  ..++|....+.+-.-.|+.+..+...-.++.+.++.+.+.+.+.+++..             
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~  163 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence            2355666666655442  1344555555555556776666655555555566666666666666554             


Q ss_pred             -hHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH---HHHHhc-CCHHHH--HHHHHHHHH----h--CCCCH---
Q 013821          331 -LPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAK---LVWELH-HDHDKA--LCYFERAVQ----A--SPADS---  392 (436)
Q Consensus       331 -~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~---~~~~~g-~d~~eA--~~~~~~al~----~--~p~~~---  392 (436)
                       .-.........|..++...+..  .|.... |.....   ++...+ .+....  ++..+..+.    .  .|-..   
T Consensus       164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence             1011223345566666665543  232221 322222   222211 111122  333322222    1  12222   


Q ss_pred             ----HHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          393 ----HVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       393 ----~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                          ..+++.|...++.++|++|+.+|+-++
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence                345677888999999999999999776

It is also involved in sporulation [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.54  E-value=0.00024  Score=43.79  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                      .+|+.+|.+++.+|+ +++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence            456666666666666 666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.00087  Score=65.85  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA-ALAAPQ--------DSNILA  305 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a-l~~~p~--------~~~~~~  305 (436)
                      .......|.++.+...+..-.+.++.+..+.+.++...+..++..|+ +.+|.+.+... +...|.        .-..|.
T Consensus       209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn-~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N  287 (696)
T KOG2471|consen  209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN-HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN  287 (696)
T ss_pred             hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc-hHHHHHHHHhcccccccCccccchhhhheeec
Confidence            34444555666666677766677776667777777777877777764 88887766543 233333        223456


Q ss_pred             HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHH
Q 013821          306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA---------N---------PGDGEIMSQYAKLV  367 (436)
Q Consensus       306 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~  367 (436)
                      ++|                      .++++.|.|.-+..+|.+|++.         .         -..-+++++.|..|
T Consensus       288 NlG----------------------cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~  345 (696)
T KOG2471|consen  288 NLG----------------------CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLY  345 (696)
T ss_pred             Ccc----------------------eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHH
Confidence            777                      7888889999999999999862         1         13468999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      ...|+ .-.|.++|.+++.....++..|..++.+.+.
T Consensus       346 Lh~gr-Pl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  346 LHSGR-PLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HhcCC-cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999988654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00071  Score=63.50  Aligned_cols=103  Identities=17%  Similarity=0.098  Sum_probs=90.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA  273 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  273 (436)
                      +..+..-|+-+++..+|..|+..|.+.|+..-.+    +..|.+.|-+.+..|+|..|+....+++.++|.+..+++.=|
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            3566778999999999999999999999975433    467899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          274 KLVWELHRDQHRALTYFERAALAAPQDS  301 (436)
Q Consensus       274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~  301 (436)
                      .|++.+.+ +++|..+++..+.++....
T Consensus       161 kc~~eLe~-~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  161 KCLLELER-FAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHHHH-HHHHHHHHhhhhhhhHHHH
Confidence            99999987 9999999999887765543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0061  Score=55.57  Aligned_cols=176  Identities=13%  Similarity=0.181  Sum_probs=120.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE  291 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~  291 (436)
                      .+|.++..+|+..+..+...+                 .|+.....++.++|.+-.+|...-.++..++.|..+-++++.
T Consensus        40 e~fr~~m~YfRAI~~~~E~S~-----------------RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~  102 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKNEKSP-----------------RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD  102 (318)
T ss_pred             hhHHHHHHHHHHHHhccccCH-----------------HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            678888888888777665444                 567777889999999999999999999999888999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCch-HHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          292 RAALAAPQDSNILAAYACFLWEMEDDG-EDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       292 ~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      +.++-+|.+.++|...-.+....|+.. +-+.....++..            ++...-+.|+.-+.+..+.|+.+-.+-.
T Consensus       103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS  182 (318)
T KOG0530|consen  103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS  182 (318)
T ss_pred             HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence            999999999999998886666666554 334444433332            5555556666666666666666555555


Q ss_pred             HHHHHHHHHHH-hcC-C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          359 IMSQYAKLVWE-LHH-D---HDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       359 ~~~~la~~~~~-~g~-d---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      +|+..-.+... .|- +   .+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus       183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            55544333322 111 0   2233445555666666666666666666654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.0053  Score=52.05  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +...++..+...+ ++++|+..+++++..+|.+..++..+.
T Consensus        64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm  103 (146)
T PF03704_consen   64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLM  103 (146)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4455666666665 488888888888888888888888888

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.40  E-value=0.039  Score=56.04  Aligned_cols=184  Identities=14%  Similarity=0.083  Sum_probs=124.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYAKLVW  277 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  277 (436)
                      ..|...-......|+++...-.|++++-.-......|..++......|+.+-|...+.++.+.. |..+.+....+.+ .
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-~  376 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF-E  376 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-H
Confidence            5566666677888999999999999998877888999999999999999999999999999875 5566666666655 4


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH---HHHHHHHh--
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE---YFSRAILA--  352 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~---~~~~al~~--  352 (436)
                      +..++++.|...+++...-.|+...+-...+.+..+.|                      ..+.+..   ++.....-  
T Consensus       377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~----------------------~~~~~~~~~~l~s~~~~~~~  434 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG----------------------NLEDANYKNELYSSIYEGKE  434 (577)
T ss_pred             HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc----------------------chhhhhHHHHHHHHhccccc
Confidence            44456999999999999888998888888884444444                      4444442   11111110  


Q ss_pred             CC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          353 NP-GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       353 ~p-~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                      ++ -....+...++..+...+|.+.|...+.++++..|.+...+..+..+....
T Consensus       435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~  488 (577)
T KOG1258|consen  435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ  488 (577)
T ss_pred             CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence            01 112334444444444444455666666666666666555555554444333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.39  E-value=0.047  Score=52.02  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----cCC
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGD-GESWMQYAKLVWEL----HRD  282 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~----~~d  282 (436)
                      .+..+|..+|+.+.+  ..++.+.+.+|.+|..    ..++.+|..+|+++.+..-.. ..+.+.++.++..-    +-.
T Consensus        91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~  168 (292)
T COG0790          91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA  168 (292)
T ss_pred             ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence            458899999995544  4577889999999987    559999999999999886554 45577888776652    122


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          283 --QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM  360 (436)
Q Consensus       283 --~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  360 (436)
                        ...|+..|.++....  +..+.+.+|.+|..-                  .-...++.+|..+|.++-+...  ...+
T Consensus       169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G------------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~  226 (292)
T COG0790         169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG------------------LGVPRDLKKAFRWYKKAAEQGD--GAAC  226 (292)
T ss_pred             HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC------------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence              347999999988776  778888888433221                  0124589999999999998877  8888


Q ss_pred             HHHHHHHHHhcC--------------CHHHHHHHHHHHHHhCCC
Q 013821          361 SQYAKLVWELHH--------------DHDKALCYFERAVQASPA  390 (436)
Q Consensus       361 ~~la~~~~~~g~--------------d~~eA~~~~~~al~~~p~  390 (436)
                      +.++ +++..|.              |...|..++.++....+.
T Consensus       227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            8899 6665552              256666666666655544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.37  E-value=0.02  Score=59.77  Aligned_cols=183  Identities=17%  Similarity=0.124  Sum_probs=129.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHc
Q 013821          211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-----KGDLYRAEDYYNHATM-----ADPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~  280 (436)
                      .++...|..+|+.+.+.  .+..+...+|.+|..     ..+.+.|+.+|+.+.+     ..-..+.+.+.+|.+|....
T Consensus       225 ~~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~  302 (552)
T KOG1550|consen  225 SGELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL  302 (552)
T ss_pred             chhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence            34567899999998877  467788888888875     4789999999999977     11225667888999887732


Q ss_pred             ---C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          281 ---R-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       281 ---~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                         . |+..|..+|.++.+..  ++.+.+.+|.++...                 .  ...++..|.++|..|...  .+
T Consensus       303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g-----------------~--~~~d~~~A~~yy~~Aa~~--G~  359 (552)
T KOG1550|consen  303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG-----------------T--KERDYRRAFEYYSLAAKA--GH  359 (552)
T ss_pred             CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC-----------------C--ccccHHHHHHHHHHHHHc--CC
Confidence               2 5788999999988775  455666777433221                 1  124678999999998764  45


Q ss_pred             HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHh
Q 013821          357 GEIMSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQ  420 (436)
Q Consensus       357 ~~~~~~la~~~~~~---g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~  420 (436)
                      ..+.++++.++..=   .++...|..++.++.+..  .+.+...++.++... ++++.+...+....+
T Consensus       360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence            78889999887632   235899999999999888  345555566554443 677666655544443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.35  E-value=0.014  Score=59.62  Aligned_cols=161  Identities=16%  Similarity=0.066  Sum_probs=114.1

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHHH-HH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCH-PLL-----LRNYAQL-LQ----KKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~-~~~-----~~~la~~-~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      +..-.||-+.+++.+.++.+..-=. +.+     .+..+.. +.    .....+.|.+.+....+..|+.....+..|.+
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~  276 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL  276 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4445599999999999988732111 111     1111111 11    24567889999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      +...++ .++|++.|++++.....-.+..   ..++++++               +++.-+.+|++|..+|.+.++.+.-
T Consensus       277 ~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~---~l~~~El~---------------w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  277 ERLKGN-LEEAIESFERAIESQSEWKQLH---HLCYFELA---------------WCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             HHHhcC-HHHHHHHHHHhccchhhHHhHH---HHHHHHHH---------------HHHHHHchHHHHHHHHHHHHhcccc
Confidence            888875 9999999999985433322211   12233333               8899999999999999999987654


Q ss_pred             C-HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHh
Q 013821          356 D-GEIMSQYAKLVWELHHDH-------DKALCYFERAVQA  387 (436)
Q Consensus       356 ~-~~~~~~la~~~~~~g~d~-------~eA~~~~~~al~~  387 (436)
                      . +-..+..|.++...++ .       ++|..+|.++-..
T Consensus       338 Ska~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  338 SKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHHH
Confidence            3 3445667778888888 7       8888888887554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.34  E-value=0.0055  Score=51.90  Aligned_cols=63  Identities=25%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA  296 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~  296 (436)
                      .++..++..+...|++++|+..+++++..+|.+..++..+..+|...|+ ..+|++.|++....
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999999999999999999986 99999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.17  Score=50.19  Aligned_cols=54  Identities=11%  Similarity=-0.023  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 013821          212 DDSAEAEEYYKRMIDEY---PCH----PLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGD  265 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~---P~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~  265 (436)
                      .+.+-|...++++..+-   |..    -++...++.+|.... .+..|...+++++++....
T Consensus        61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~  122 (629)
T KOG2300|consen   61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV  122 (629)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence            44555555555554432   211    123344444444433 4444555555555554443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.27  E-value=0.035  Score=53.85  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=115.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          253 DYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      .-|++.+..+|.+..+|..+....-....           -.+.-+.+|++|++.+|++...+..+-             
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l-------------   72 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYL-------------   72 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-------------
Confidence            45788899999999999999876544421           035678899999999999999988887             


Q ss_pred             HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCC----C----
Q 013821          322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE---LHHDHDKALCYFERAVQASP----A----  390 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~d~~eA~~~~~~al~~~p----~----  390 (436)
                               .+..+.-+-++..+.+++++..+|++...|..+-.....   .-. +......|.+++..-.    .    
T Consensus        73 ---------~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~~L~~~~~~~~~~  142 (321)
T PF08424_consen   73 ---------EEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLRALSRRRSGRMTS  142 (321)
T ss_pred             ---------HHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHhhcccccc
Confidence                     666677788888999999999999999988766655443   123 6677778877775311    0    


Q ss_pred             ----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          391 ----------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       391 ----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                                ...++..+..++.+.|-.+.|+..++-.++++
T Consensus       143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence                      12566788888999999999999999999985

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.25  E-value=0.022  Score=55.63  Aligned_cols=126  Identities=17%  Similarity=0.150  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--H
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP----GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-D--S  301 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~--~  301 (436)
                      ......|...+.+..+.|.++.|...+.++...++    ..+.+.+..+.+++..|+ ..+|+..++..+..... .  .
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcccc
Confidence            34557888889999999999999998888887652    256788888888888875 88898888888872211 1  0


Q ss_pred             H------------------------HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH------cCCHHHHHHHHHHHHH
Q 013821          302 N------------------------ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS------KGDLEGAEEYFSRAIL  351 (436)
Q Consensus       302 ~------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~  351 (436)
                      .                        .....+.++...|               .....      .+..++++..|++++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a---------------~w~~~~~~~~~~~~~~~~~~~~~~a~~  286 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLA---------------KWLDELYSKLSSESSDEILKYYKEATK  286 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHH---------------HHHHhhccccccccHHHHHHHHHHHHH
Confidence            0                        0111122222222               22222      3677777777777777


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 013821          352 ANPGDGEIMSQYAKLVWEL  370 (436)
Q Consensus       352 ~~p~~~~~~~~la~~~~~~  370 (436)
                      ++|....+|+.+|..+...
T Consensus       287 ~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  287 LDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             hChhHHHHHHHHHHHHHHH
Confidence            7777777777777666443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.25  E-value=0.24  Score=48.89  Aligned_cols=49  Identities=10%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      ++..|+ |.++.-+-.-..++.| .+.++..+|.++....+|++|..++..
T Consensus       472 Lysqge-y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  472 LYSQGE-YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHhccc-HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            456777 8888888888888999 699999999999999999999887653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.22  E-value=0.015  Score=57.14  Aligned_cols=168  Identities=13%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHh---CCC
Q 013821          224 MIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE-RAALA---APQ  299 (436)
Q Consensus       224 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~-~al~~---~p~  299 (436)
                      .+..+|-+.+++..++.++..+|+++.|.+.+++|+-.-..          ++...   +..-..... -...+   .+.
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----------~~~~~---F~~~~~~~~~g~~rL~~~~~e   98 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----------AFHPS---FSPFRSNLTSGNCRLDYRRPE   98 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------HHHHH---hhhhhcccccCccccCCcccc
Confidence            35678889999999999999999999999998888643111          10000   000000000 00011   133


Q ss_pred             CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHhcCCHHHH
Q 013821          300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLV-WELHHDHDKA  377 (436)
Q Consensus       300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~d~~eA  377 (436)
                      |...+..+-...                   ..+.+.|-+..|.++.+-.+.++|. |+-....+...| .+.++ |+=-
T Consensus        99 NR~fflal~r~i-------------------~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~-y~~L  158 (360)
T PF04910_consen   99 NRQFFLALFRYI-------------------QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ-YQWL  158 (360)
T ss_pred             chHHHHHHHHHH-------------------HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC-HHHH
Confidence            444333333222                   6777899999999999999999998 765544444444 44555 7777


Q ss_pred             HHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCh---------------HHHHHHHHHHHhhCCC
Q 013821          378 LCYFERAVQASPA-----DSHVLAAYACFLWETEED---------------EDDSKSSDQFQQVAPI  424 (436)
Q Consensus       378 ~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~---------------~eA~~~~~~al~l~p~  424 (436)
                      +..++........     -+...+..+.+++.+++.               ++|...+.+|+...|.
T Consensus       159 i~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  159 IDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            7777765542111     234567778888888888               8999999999987764

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.18  E-value=0.0003  Score=66.24  Aligned_cols=92  Identities=15%  Similarity=0.028  Sum_probs=55.5

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH  284 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~  284 (436)
                      +.-.+..|.+++|++.|..++.++|..+..|...+.++++++++..|+..+..+++++|+...-+-..+.....++. +.
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~-~e  199 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN-WE  199 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc-hH
Confidence            34445556666666666666666666666666666666666666666666666666666665555555555444442 55


Q ss_pred             HHHHHHHHHHHhC
Q 013821          285 RALTYFERAALAA  297 (436)
Q Consensus       285 ~A~~~~~~al~~~  297 (436)
                      +|...+..+.+++
T Consensus       200 ~aa~dl~~a~kld  212 (377)
T KOG1308|consen  200 EAAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHHhcc
Confidence            6655555555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.16  E-value=0.13  Score=50.20  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      ...|..++.+..+.|. ++.|...+.++....+.    .+.+.+..+.+++..|+..+|+..+...+.. ......... 
T Consensus       146 ~~~~l~~a~~aRk~g~-~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~-  222 (352)
T PF02259_consen  146 AETWLKFAKLARKAGN-FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI-  222 (352)
T ss_pred             HHHHHHHHHHHHHCCC-cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc-
Confidence            4556666666666654 77777777777765421    4566666777777777766666666555441 000000000 


Q ss_pred             HHHHHHHH--------------HHhCCCCHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          342 AEEYFSRA--------------ILANPGDGEIMSQYAKLVWEL------HHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       342 A~~~~~~a--------------l~~~p~~~~~~~~la~~~~~~------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      ....+...              .......+.++..+|......      +. .++++..|.++++.+|....+|..+|..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES-SDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            00000000              000011245777777777777      66 8999999999999999999999999988


Q ss_pred             HHHCCCh-----------------HHHHHHHHHHHhhCCCCh
Q 013821          402 LWETEED-----------------EDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       402 ~~~~g~~-----------------~eA~~~~~~al~l~p~~~  426 (436)
                      +.+.-+.                 ..|+..|-+++.+.+.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~  343 (352)
T PF02259_consen  302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV  343 (352)
T ss_pred             HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence            6554211                 347888888888887743

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.02  E-value=0.04  Score=47.01  Aligned_cols=82  Identities=18%  Similarity=0.040  Sum_probs=73.0

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ++.+.+..+-...++.+++..++...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|++.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45556666777788999999999999999999999999999999999999999999999999999999998999988877


Q ss_pred             Hc
Q 013821          279 LH  280 (436)
Q Consensus       279 ~~  280 (436)
                      ++
T Consensus        91 ~~   92 (160)
T PF09613_consen   91 LG   92 (160)
T ss_pred             cC
Confidence            75

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.02  E-value=0.0005  Score=64.79  Aligned_cols=114  Identities=14%  Similarity=0.017  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      +++.|++.|..++.++|.....+...+                      .++.+++++..|+..|..|+.++|+...-+-
T Consensus       129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~----------------------sv~lkl~kp~~airD~d~A~ein~Dsa~~yk  186 (377)
T KOG1308|consen  129 EFDTAIELFTSAIELNPPLAILYAKRA----------------------SVFLKLKKPNAAIRDCDFAIEINPDSAKGYK  186 (377)
T ss_pred             chhhhhcccccccccCCchhhhccccc----------------------ceeeeccCCchhhhhhhhhhccCcccccccc
Confidence            478888888888888888888887788                      8888899999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                      ..+.+...+|+ |.+|...+..+.+++=+ ..+-..+-.+.-+.+..++-...+++..
T Consensus       187 frg~A~rllg~-~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~  242 (377)
T KOG1308|consen  187 FRGYAERLLGN-WEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR  242 (377)
T ss_pred             hhhHHHHHhhc-hHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence            99999999999 99999999999988754 2222333344334444444333344333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.00  E-value=0.0015  Score=40.20  Aligned_cols=30  Identities=23%  Similarity=0.447  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP  263 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  263 (436)
                      +|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455566666666666666666666665555

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.97  E-value=0.083  Score=46.35  Aligned_cols=89  Identities=11%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-DSHVLAAYACFLWETE  406 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g  406 (436)
                      ..+...+++++|+..++.++....+.   .-+-.+|+.++.++|. +++|+..+.....  +. ....-...|.++...|
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg  173 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKE--ESWAAIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcC
Confidence            66777888888888888888654432   3356778888888888 8888887765322  11 1234566788888888


Q ss_pred             ChHHHHHHHHHHHhhC
Q 013821          407 EDEDDSKSSDQFQQVA  422 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~  422 (436)
                      +.++|+..|+++++..
T Consensus       174 ~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         174 DKQEARAAYEKALESD  189 (207)
T ss_pred             chHHHHHHHHHHHHcc
Confidence            8888988888888875

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.96  E-value=0.12  Score=52.07  Aligned_cols=171  Identities=16%  Similarity=0.197  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 013821          250 RAEDYYNHATMADPGDGESWMQYAKLVWELHRD--------------QHRALTYFERAALAAP-QDSNILAAYACFLWEM  314 (436)
Q Consensus       250 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~  314 (436)
                      .-.-.|++++..-+-.+++|+..+..+...+ +              -+++..+|++++..-- .+...++.++......
T Consensus       263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s-~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~  341 (656)
T KOG1914|consen  263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS-DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR  341 (656)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence            3445678888888889999998876655543 3              4788999999987543 3555556666554443


Q ss_pred             cC---chHHHHHHHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013821          315 ED---DGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL  378 (436)
Q Consensus       315 g~---~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~  378 (436)
                      -+   .+.....+++.+..             ..-.+..-...|...|.+|-+..-.-..++..-|.+-+...+|..-|.
T Consensus       342 ~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Af  421 (656)
T KOG1914|consen  342 YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAF  421 (656)
T ss_pred             cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHH
Confidence            33   45555666655554             333344556777888888866544434555555555444444499999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      ..|+-.+...++.+.....+...+..+++...|...|++++..
T Consensus       422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999876

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.13  Score=51.00  Aligned_cols=192  Identities=14%  Similarity=0.070  Sum_probs=131.3

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH--HHHH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDE---YPC-------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DG--ESWM  270 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~---~P~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--~~~~  270 (436)
                      +..+-.-.|++.+|++....+.+.   .|.       .+..+..+|......+.++.|...|..|.+.... +.  ..-.
T Consensus       329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl  408 (629)
T KOG2300|consen  329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL  408 (629)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344566789999999888877763   454       3466778888888899999999999999987544 33  3445


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQDS---NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~  347 (436)
                      ++|.+|...++    +..+|+-.-.+.|.+.   -.....+.+++..|               ...+.++++.+|...+.
T Consensus       409 nlAi~YL~~~~----~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g---------------lfaf~qn~lnEaK~~l~  469 (629)
T KOG2300|consen  409 NLAISYLRIGD----AEDLYKALDLIGPLNTNSLSSQRLEASILYVYG---------------LFAFKQNDLNEAKRFLR  469 (629)
T ss_pred             hHHHHHHHhcc----HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH---------------HHHHHhccHHHHHHHHH
Confidence            67888777543    4444444444556532   22233444444444               77788999999999999


Q ss_pred             HHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHHHHCCC--hHHHHH
Q 013821          348 RAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSH---VLAAYACFLWETEE--DEDDSK  413 (436)
Q Consensus       348 ~al~~~p~------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p~~~~---~~~~la~~~~~~g~--~~eA~~  413 (436)
                      +.+++...      .+-.+..|+.+....|+ ..++.....-++++.   |+.+.   ....+-.++...|+  .+++.+
T Consensus       470 e~Lkmanaed~~rL~a~~LvLLs~v~lslgn-~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e  548 (629)
T KOG2300|consen  470 ETLKMANAEDLNRLTACSLVLLSHVFLSLGN-TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE  548 (629)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHHHHhcc-hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence            99988622      13356678888889999 999999999888765   55442   23445566777787  444444


Q ss_pred             HH
Q 013821          414 SS  415 (436)
Q Consensus       414 ~~  415 (436)
                      .|
T Consensus       549 ~~  550 (629)
T KOG2300|consen  549 AF  550 (629)
T ss_pred             HH
Confidence            44

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.95  E-value=0.017  Score=57.33  Aligned_cols=97  Identities=16%  Similarity=0.274  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      ..+-...|+.|+...+.|...|..+.                      ....+.+.+.+--..|.+++..+|+++++|..
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi----------------------~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~  144 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYI----------------------AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY  144 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHH----------------------HHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence            45677889999999999999999988                      55556667889999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      -|.-.+..+.+.+.|..+|.++|+.+|+.+..|..+-..
T Consensus       145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            999999988889999999999999999999887665544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.095  Score=56.27  Aligned_cols=201  Identities=14%  Similarity=0.069  Sum_probs=137.9

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PG-DGESWMQY  272 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l  272 (436)
                      +.+..|..+|....+.|...+|++-|-++     +++..|.....+..+.|.|++-+.++..|-+..  |. +.+..+.+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence            44578999999999999999999988776     778888999999999999999999988887653  22 23333333


Q ss_pred             HHH------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821          273 AKL------------------------VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       273 a~~------------------------~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      |..                        ++..+. |+.|.-+|        .+..-|..++..+..+|+++.|....+++-
T Consensus      1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~-y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM-YEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh-hHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            222                        111111 22222222        233445677888888888887777665221


Q ss_pred             HH-------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821          329 QV-------------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH  371 (436)
Q Consensus       329 ~~-------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  371 (436)
                      ..                                     ..|...|-|++-+..++.++.+...+-..+..||.+|.+- 
T Consensus      1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred             chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence            11                                     6788889999999999999998888888888899887765 


Q ss_pred             CCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHH
Q 013821          372 HDHDKALCYFERAVQAS--------PADSHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~  412 (436)
                      + +++-.++++-....-        -+....|..+..+|.+-.+|+.|.
T Consensus      1327 k-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 K-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             C-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            4 566666655433211        123467777777777777777664

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.018  Score=57.18  Aligned_cols=95  Identities=17%  Similarity=0.283  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA  293 (436)
Q Consensus       214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a  293 (436)
                      ...-...|+.++...+.+...|..+.....+.+.+.+--..|.+++..+|+++..|..-|.-.+..+...+.|...|.++
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            35567789999999999999999999988888889999999999999999999999999988888887789999999999


Q ss_pred             HHhCCCCHHHHHHHH
Q 013821          294 ALAAPQDSNILAAYA  308 (436)
Q Consensus       294 l~~~p~~~~~~~~la  308 (436)
                      ++.+|+.+..|..+-
T Consensus       167 LR~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEYF  181 (568)
T ss_pred             hhcCCCChHHHHHHH
Confidence            999999998886444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.93  E-value=0.12  Score=50.95  Aligned_cols=112  Identities=15%  Similarity=0.117  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH--HHHHHHH-----------------
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD--KAQEEHI-----------------  328 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--~~~~~~~-----------------  328 (436)
                      .+..-|.-+|+.|+.-++|+..++.+++..+.+.......-.+. + ..+.+|+  ..+.+.+                 
T Consensus       381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv-K-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~  458 (549)
T PF07079_consen  381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV-K-QAYKQALSMHAIPRLLKLEDFITEVGLTPITIS  458 (549)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH-H-HHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence            44455666777776567888888888888887764432111100 0 0011111  0010000                 


Q ss_pred             ----HH-----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          329 ----QV-----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       329 ----~~-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                          ..     ..++.+|+|.++.-+-.-..++.| .+.++..+|.+++...+ |++|..++..
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~  520 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-YQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence                00     677889999999999999999999 79999999999999999 9999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.88  E-value=0.22  Score=52.98  Aligned_cols=194  Identities=16%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESWM  270 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~  270 (436)
                      +.......++.+|..+..++...-+.         .+......|.+....|++++|+++.+.++..-|.+     ..+..
T Consensus       422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s  501 (894)
T COG2909         422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS  501 (894)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence            33556678888888888887765433         12455667788888999999999999999887765     34566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHH--HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH--HHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILA--AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL--EGA  342 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~--~~A  342 (436)
                      .+|.+..-.| ++++|..+.+.+.+....    ...+|.  ..+                      .++..+|+.  ++.
T Consensus       502 v~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s----------------------~il~~qGq~~~a~~  558 (894)
T COG2909         502 VLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQS----------------------EILEAQGQVARAEQ  558 (894)
T ss_pred             hhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH----------------------HHHHHhhHHHHHHH
Confidence            6777766666 599999999888877433    222222  223                      555556622  222


Q ss_pred             HHHHHHH----HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHCCChHHH
Q 013821          343 EEYFSRA----ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----SPAD--SH-VLAAYACFLWETEEDEDD  411 (436)
Q Consensus       343 ~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~eA  411 (436)
                      +..|...    +...|-+.-.....+.+++..-+ ++.+.....+.+++    .|..  .. ++..++.+++..|+.++|
T Consensus       559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A  637 (894)
T COG2909         559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKA  637 (894)
T ss_pred             HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHH
Confidence            2222222    12233333344444444444444 55555555554443    2222  11 224677778888888888


Q ss_pred             HHHHHHHHhhC
Q 013821          412 SKSSDQFQQVA  422 (436)
Q Consensus       412 ~~~~~~al~l~  422 (436)
                      ...+.+...+.
T Consensus       638 ~~~l~~~~~l~  648 (894)
T COG2909         638 LAQLDELERLL  648 (894)
T ss_pred             HHHHHHHHHHh
Confidence            77777766653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.85  E-value=0.0023  Score=39.32  Aligned_cols=31  Identities=32%  Similarity=0.502  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                      .+|+.+|.++..+|+ +++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~-~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGD-YEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence            345556666666655 6666666666666555

...

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.85  E-value=0.0058  Score=61.48  Aligned_cols=104  Identities=17%  Similarity=0.143  Sum_probs=92.5

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~  283 (436)
                      |......|+...|++++..++-..|... ....++|+++..-|-.-+|-.++.+++.++-..+..++.+|.++..+++ .
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~-i  692 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN-I  692 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh-h
Confidence            5566678999999999999999998665 4578999999999999999999999999998899999999999999974 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          284 HRALTYFERAALAAPQDSNILAAYAC  309 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~  309 (436)
                      +.|++.|++|++++|+++.....+-.
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            99999999999999999887765553

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.81  E-value=0.19  Score=49.50  Aligned_cols=201  Identities=11%  Similarity=0.137  Sum_probs=139.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 013821          219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-  297 (436)
Q Consensus       219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-  297 (436)
                      -.+++++..-|-.++.|+.....+...++-+.|+....+++...|.   ....++.++... .|-+....+|+++++.- 
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~-nd~e~v~~~fdk~~q~L~  364 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELV-NDEEAVYGCFDKCTQDLK  364 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhc-ccHHHHhhhHHHHHHHHH
Confidence            3568888888888999999999999999999999999998888776   555566554433 34566666666665321 


Q ss_pred             --------------CCCH----H-----------HHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHH
Q 013821          298 --------------PQDS----N-----------ILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQS  335 (436)
Q Consensus       298 --------------p~~~----~-----------~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~  335 (436)
                                    .++.    +           +|..+.+...+......|..++.++-+.             .-+..
T Consensus       365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~  444 (660)
T COG5107         365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA  444 (660)
T ss_pred             HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence                          0011    1           2222333333444445555555544443             55667


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHH
Q 013821          336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSK  413 (436)
Q Consensus       336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~  413 (436)
                      .|++.-|-..|+-.+...|+++......-..+...++ -..|..+|++++..-.+.  ..+|..+...-..-|+...+..
T Consensus       445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind-e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s  523 (660)
T COG5107         445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND-EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS  523 (660)
T ss_pred             cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc-HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence            8899999999999999999988777777777788888 788999999887654433  4667777777777788877777


Q ss_pred             HHHHHHhhCCC
Q 013821          414 SSDQFQQVAPI  424 (436)
Q Consensus       414 ~~~~al~l~p~  424 (436)
                      .-++...+.|.
T Consensus       524 Le~rf~e~~pQ  534 (660)
T COG5107         524 LEERFRELVPQ  534 (660)
T ss_pred             HHHHHHHHcCc
Confidence            76666666654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.75  E-value=0.12  Score=47.72  Aligned_cols=175  Identities=11%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCC
Q 013821          212 DDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~d  282 (436)
                      .+.++|+.-|++.+++.+.-.    .++..+..+++.+++|++-.+.|.+.+..     ..+..+-..+-..-|....++
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            456788888888888776554    45666777778888888887777776653     112111111111111222222


Q ss_pred             HHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHHccCchHHHHHHHHHHHH------------------------hH
Q 013821          283 QHRALTYFERAALA--APQDSNILA----AYACFLWEMEDDGEDDKAQEEHIQV------------------------LP  332 (436)
Q Consensus       283 ~~~A~~~~~~al~~--~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~  332 (436)
                      .+--..+|+..++.  +..+...|+    .+|.+++..+.+.+-.+++.+.-+.                        ..
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            34444455544433  223444443    5677777777776666666543332                        56


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGD--GEIMSQ----YAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~----la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      |..+++-.+-...|++++.+...-  +.++-.    =|....+.|+ |++|-..|-.|+..
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhc
Confidence            666777777777888887764322  222222    2334556677 88887777776654

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.47  Score=47.90  Aligned_cols=208  Identities=16%  Similarity=0.115  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYAKLVWELHRDQHRALTYFER  292 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~d~~~A~~~~~~  292 (436)
                      ....+.+.......|+++...+..+.++...|+.+.|+..++..+...-.  ..-.++.+|.++..+.+ |.+|...+..
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~-~~~aad~~~~  328 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQ-YSRAADSFDL  328 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence            45556666667788999999999999999999988899999888871111  12345667777777765 9999999988


Q ss_pred             HHHhCCCCHHHHHHHH-HHH--------HHccCchHHHHHHHH---HHHH---------------hHHHHcC--------
Q 013821          293 AALAAPQDSNILAAYA-CFL--------WEMEDDGEDDKAQEE---HIQV---------------LPIQSKG--------  337 (436)
Q Consensus       293 al~~~p~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~---~~~~---------------~~~~~~g--------  337 (436)
                      ..+...-..-.+..++ -++        ...++.+++....+.   .+..               .-+...+        
T Consensus       329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l  408 (546)
T KOG3783|consen  329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL  408 (546)
T ss_pred             HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence            8877654433333333 222        222344443333321   1111               1111111        


Q ss_pred             -----------------CHHHHHHHHHHHHHh----CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC--
Q 013821          338 -----------------DLEGAEEYFSRAILA----NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA--  390 (436)
Q Consensus       338 -----------------~~~~A~~~~~~al~~----~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~---~p~--  390 (436)
                                       ...+.+ .++..++.    ++++ .-.+..+|.++..+|+ ...|..+|...++.   ...  
T Consensus       409 a~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~  486 (546)
T KOG3783|consen  409 ASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDL  486 (546)
T ss_pred             cchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhcccc
Confidence                             111111 11111111    1111 2346678999999998 89999999998843   222  


Q ss_pred             --CHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCCC
Q 013821          391 --DSHVLAAYACFLWETEE-DEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       391 --~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~p~~  425 (436)
                        .|.+++.+|.+++.+|. ..++.+++.+|.+-..++
T Consensus       487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence              24789999999999999 999999999999876544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.69  E-value=0.043  Score=43.61  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=60.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          238 YAQLLQKKGDLYRAEDYYNHATMADPGDGES---WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      +|.-++..|++-+|++..+..+...+++...   +..-|.+++.             .+...+..+....+.++      
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~-------------lA~~ten~d~k~~yLl~------   62 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK-------------LAKKTENPDVKFRYLLG------   62 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH-------------HHHhccCchHHHHHHHH------
Confidence            3556667777777777777777776665533   2333333322             22233322333333333      


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                                                 ++++|.++..+.|..+..++.+|.-+..... |+++..-.+++|.+
T Consensus        63 ---------------------------sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~-Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 ---------------------------SVECFSRAVELSPDSAHSLFELASQLGSVKY-YKKAVKKAKRGLSV  107 (111)
T ss_pred             ---------------------------hHHHHHHHhccChhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence                                       5777777777777777777777766555545 67777777776654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.16  Score=54.66  Aligned_cols=61  Identities=15%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA  296 (436)
Q Consensus       230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~  296 (436)
                      +.+.+|..+|.+..+.|...+|++-|-+|     +++..+.....+....+. |++-++++.-+-+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh
Confidence            44567777777777777777777777554     566666666666666654 77777777666544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.59  E-value=0.023  Score=43.82  Aligned_cols=77  Identities=12%  Similarity=-0.028  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821          342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al  419 (436)
                      .+..+++.++.+|++..+.+.+|..+...|+ +++|++.+-.+++.+++.  ..+...+-.++..+|.-+..+..|++-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGD-YEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3567889999999999999999999999999 999999999999988765  5777888888888888777766666654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.59  E-value=1.3  Score=47.00  Aligned_cols=237  Identities=14%  Similarity=0.051  Sum_probs=130.7

Q ss_pred             cCCCChHHHHHhhcCCCCCCch-----hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---CH-HHHHHH--HHHHHHc
Q 013821          177 ERPVSPPMYLAMGLGISVPGFD-----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---HP-LLLRNY--AQLLQKK  245 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~-~~~~~l--a~~~~~~  245 (436)
                      .+.+.|+.++.+|+.+.....-     ..-..++.++.+.+... |+..+++.++....   .. ...+.+  ...+...
T Consensus        74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~  152 (608)
T PF10345_consen   74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH  152 (608)
T ss_pred             CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence            3667778888888777653111     22334566666666655 88888887775433   11 111222  2222233


Q ss_pred             CCHHHHHHHHHHHHHhC--CCCHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHH
Q 013821          246 GDLYRAEDYYNHATMAD--PGDGESWMQ----YAKLVWELHRDQHRALTYFERAALAAP----------QDSNILAAYAC  309 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~--p~~~~~~~~----la~~~~~~~~d~~~A~~~~~~al~~~p----------~~~~~~~~la~  309 (436)
                      +++..|++.++......  ..++.+...    .+.++...+ ..+++++..+++.....          ....+|..+-.
T Consensus       153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~  231 (608)
T PF10345_consen  153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD  231 (608)
T ss_pred             ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence            67888888888777664  344433222    222333332 25667777776643221          12333333332


Q ss_pred             H--HHHccCchHHHHHHH---HHHHH---------------------------------------------------hHH
Q 013821          310 F--LWEMEDDGEDDKAQE---EHIQV---------------------------------------------------LPI  333 (436)
Q Consensus       310 ~--~~~~g~~~~A~~~~~---~~~~~---------------------------------------------------~~~  333 (436)
                      +  ....|+...+...+.   +.+..                                                   ...
T Consensus       232 l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~  311 (608)
T PF10345_consen  232 LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN  311 (608)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH
Confidence            2  333333333333322   11000                                                   344


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          334 QSKGDLEGAEEYFSRAILANPGD--------------------------GEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       334 ~~~g~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      ...+..++|.+++.++++.-.+.                          ..+....+.+..-.++ +..|...++.+...
T Consensus       312 ~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~-~~~a~~~l~~~~~~  390 (608)
T PF10345_consen  312 LYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD-WSKATQELEFMRQL  390 (608)
T ss_pred             hhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHH
Confidence            44566667888888777651110                          1133455555666777 88888888877654


Q ss_pred             C---CC------CHHHHHHHHHHHHHCCChHHHHHHHH
Q 013821          388 S---PA------DSHVLAAYACFLWETEEDEDDSKSSD  416 (436)
Q Consensus       388 ~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~  416 (436)
                      .   |.      .+.+++..|..+...|+.+.|..+|.
T Consensus       391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            3   22      35677888888889999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.16  Score=44.62  Aligned_cols=117  Identities=9%  Similarity=0.020  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHH
Q 013821          250 RAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKA  323 (436)
Q Consensus       250 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~  323 (436)
                      +.+...++....++...   .+-..+|..+...++ +++|+..++.++....+.   .-+-..++               
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~-~d~A~aqL~~~l~~t~De~lk~l~~lRLA---------------  133 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN-LDKAEAQLKQALAQTKDENLKALAALRLA---------------  133 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccchhHHHHHHHHHHHH---------------
Confidence            33444444555554443   344567777778774 999999988888654442   22335566               


Q ss_pred             HHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          324 QEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       324 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                             .+...+|.+++|+..+...-.-.- .+......|.++...|+ -++|+..|+++++..++.
T Consensus       134 -------rvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~-k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         134 -------RVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD-KQEARAAYEKALESDASP  192 (207)
T ss_pred             -------HHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc-hHHHHHHHHHHHHccCCh
Confidence                   777778888888777655422110 12345567888888888 888888888888887553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.51  E-value=0.0054  Score=37.15  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPG  264 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  264 (436)
                      +++.+|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555553

>PRK10941 hypothetical protein; Provisional

Probab=96.49  E-value=0.038  Score=51.85  Aligned_cols=69  Identities=16%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      .+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|. +..|...++..++..|+++.+......
T Consensus       189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            888999999999999999999999999999999999999999 999999999999999998866544333

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.45  E-value=0.039  Score=51.56  Aligned_cols=65  Identities=20%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      .+.|+.++|...|+.|+++.|.+++++..+|.+.... ++.-+|-.+|-+|+.++|.+.+++.+.+
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3445555555555555555555555555555443333 3455555555555555555555554444

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.45  E-value=0.0079  Score=56.06  Aligned_cols=67  Identities=18%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      .+.|+.++|..+|+.++.+.|++++++..+|.+....++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3459999999999999999999999999999999999999999999999999999999988877654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.40  E-value=0.0069  Score=37.91  Aligned_cols=25  Identities=32%  Similarity=0.666  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      |.++|.+|...|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555555555555555543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.23  E-value=0.011  Score=35.79  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      +++.+|.++...|+ +++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~-~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGD-YDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCH-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccC-HHHHHHHHHHHHHHCcC
Confidence            45556666666655 66666666666665554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.21  E-value=0.0069  Score=37.92  Aligned_cols=28  Identities=25%  Similarity=0.265  Sum_probs=24.0

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHh
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDE  227 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  227 (436)
                      +|.++|.++...|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999996643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.17  E-value=0.2  Score=52.13  Aligned_cols=206  Identities=13%  Similarity=0.073  Sum_probs=102.3

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKR------MIDE----YPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM  270 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~------al~~----~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  270 (436)
                      -..|.++.+..++++|+++|++      ++++    .|... ..--..|.-+.+.|+++.|+.+|-.+--+-        
T Consensus       665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~--------  736 (1636)
T KOG3616|consen  665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI--------  736 (1636)
T ss_pred             HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH--------
Confidence            3445556666666667666654      2222    12221 122234555556677777776665442110        


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYF  346 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~  346 (436)
                      .-...-... +++.+|+..++..-... .....+-..+.-|...|+++.|.+++.+.-..    ..|-+.|+|.+|.+.-
T Consensus       737 kaieaai~a-kew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  737 KAIEAAIGA-KEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             HHHHHHhhh-hhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHH
Confidence            000000111 12455554444332211 11222334556666667777776666532211    6677788888776655


Q ss_pred             HHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHH-------------HHHHHHH------HH----hCCCC-HHHHHHHHHH
Q 013821          347 SRAILANPGD-GEIMSQYAKLVWELHHDHDKA-------------LCYFERA------VQ----ASPAD-SHVLAAYACF  401 (436)
Q Consensus       347 ~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA-------------~~~~~~a------l~----~~p~~-~~~~~~la~~  401 (436)
                      ++..  .|.. ...|...+.-+-..|+ |.+|             +.+|.+.      +.    ..|+. .+.+..++.-
T Consensus       815 ~e~~--~~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e  891 (1636)
T KOG3616|consen  815 EECH--GPEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKE  891 (1636)
T ss_pred             HHhc--CchhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHH
Confidence            5442  2332 2233344444455555 5444             4444442      11    12332 2566778888


Q ss_pred             HHHCCChHHHHHHHHHHHh
Q 013821          402 LWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       402 ~~~~g~~~eA~~~~~~al~  420 (436)
                      |...|+...|...|-++-.
T Consensus       892 ~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  892 LEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHhccChhHHHHHHHhhhh
Confidence            8888888888877765543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.14  E-value=0.036  Score=38.04  Aligned_cols=42  Identities=17%  Similarity=0.071  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK  274 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  274 (436)
                      +.++.+|..+++.|+|++|..+.+.+++.+|++..+......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356777777888888888888888888888877766554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.13  E-value=0.21  Score=41.96  Aligned_cols=79  Identities=13%  Similarity=-0.082  Sum_probs=67.8

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  280 (436)
                      +.+-.+-...++.+++..++..+--+.|+.+.+-..-|.++...|+|.+|+..++......+..+..--.++.|++.++
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            3333444557899999999999999999999999999999999999999999999999988888888888888887776

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.19  Score=51.18  Aligned_cols=143  Identities=17%  Similarity=0.000  Sum_probs=111.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRN--YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY  289 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~  289 (436)
                      +...-++..+...+.++|.++..+..  +...+...++...+...+..++..+|.+..+..+++..+...+..+.-+...
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            33444777777777888888866443  4667777888889999999999999999999999998888877755666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE  369 (436)
Q Consensus       290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  369 (436)
                      .+.+....|++......+..++. .+               ......|+..++....+++.++.|.++.+...+.....+
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~  188 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQ-LG---------------RYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE  188 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHH-HH---------------HHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence            66689999999988877765555 44               677788999999999999999999987777666665433


Q ss_pred             h
Q 013821          370 L  370 (436)
Q Consensus       370 ~  370 (436)
                      .
T Consensus       189 ~  189 (620)
T COG3914         189 Q  189 (620)
T ss_pred             h
Confidence            3

>PRK10941 hypothetical protein; Provisional

Probab=96.06  E-value=0.055  Score=50.79  Aligned_cols=67  Identities=13%  Similarity=-0.010  Sum_probs=38.6

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM  270 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  270 (436)
                      +-.++.+.++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+..
T Consensus       187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            3335555566666666666666666655555555666666666666666666655555555554443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.06  E-value=0.062  Score=42.70  Aligned_cols=92  Identities=15%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCCHHHH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKG----D-------LYRAEDYYNHATMADPGDGESW  269 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g----~-------~~~A~~~~~~al~~~p~~~~~~  269 (436)
                      ++..++..|++-+|+++.+..+..++++.   ..+...|.++..+.    +       .-.+++.|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            34567888999999999999999988776   55667777776533    2       2357788888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          270 MQYAKLVWELHRDQHRALTYFERAALA  296 (436)
Q Consensus       270 ~~la~~~~~~~~d~~~A~~~~~~al~~  296 (436)
                      +.+|.-+-.... |++++.-.++++.+
T Consensus        82 ~~la~~l~s~~~-Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKY-YKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence            887766544443 77777777776654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.03  E-value=0.34  Score=50.22  Aligned_cols=187  Identities=17%  Similarity=0.073  Sum_probs=103.4

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-----DGE---SWMQYAKLVWELHRDQHRALTYFERAALA  296 (436)
Q Consensus       225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~---~~~~la~~~~~~~~d~~~A~~~~~~al~~  296 (436)
                      ++.+| ++..|..+|.....+-.++-|...|-+.-....-     -..   --...|.+-..-| +|++|.+.|-.+=+.
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g-~feeaek~yld~drr  763 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYG-EFEEAEKLYLDADRR  763 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhc-chhHhhhhhhccchh
Confidence            44566 7889999999888888888888877665321110     000   0011222222223 366666655332111


Q ss_pred             C-------------------------C---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHH
Q 013821          297 A-------------------------P---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEE  344 (436)
Q Consensus       297 ~-------------------------p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~  344 (436)
                      +                         .   ....++.++|..+..+..+++|.+.|...-..    .+++...+|++-+.
T Consensus       764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~  843 (1189)
T KOG2041|consen  764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV  843 (1189)
T ss_pred             hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence            1                         1   12345666676666666666666665532221    44555555544332


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------HHhC-----CCCHHHHHHHHH
Q 013821          345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------------------VQAS-----PADSHVLAAYAC  400 (436)
Q Consensus       345 ~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a-------------------l~~~-----p~~~~~~~~la~  400 (436)
                      +    ...-|++.+.+-.+|..+...|. -++|.+.|-+.                   +++.     |.-.......+.
T Consensus       844 l----a~~Lpe~s~llp~~a~mf~svGM-C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa  918 (1189)
T KOG2041|consen  844 L----ARTLPEDSELLPVMADMFTSVGM-CDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA  918 (1189)
T ss_pred             H----HHhcCcccchHHHHHHHHHhhch-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            2    23347888888888888888888 88887766442                   1111     111122233344


Q ss_pred             HHHHCCChHHHHHHHHHH
Q 013821          401 FLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       401 ~~~~~g~~~eA~~~~~~a  418 (436)
                      -+...++.-+|++.++++
T Consensus       919 qll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  919 QLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHhhcchHHHHHHhhhc
Confidence            456667778888877766

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.02  E-value=0.12  Score=39.96  Aligned_cols=64  Identities=14%  Similarity=-0.016  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHc
Q 013821          217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD--GESWMQYAKLVWELH  280 (436)
Q Consensus       217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~  280 (436)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++..  ..+...+-.++..+|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            4667888899999999999999999999999999999999998887764  444444444444444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.01  E-value=0.14  Score=43.63  Aligned_cols=78  Identities=18%  Similarity=0.075  Sum_probs=67.6

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE  409 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  409 (436)
                      .+-...++.+++...+...--+.|..+++-..-|+++...|+ |.+|+..|+.+.+..|..+.+-..++.|+..+|+.+
T Consensus        18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~-w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGD-WDDALRLLRELEERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence            556677889999998888888899999999999999999999 999999999988888888888888888888887753

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.00  E-value=0.33  Score=45.99  Aligned_cols=124  Identities=15%  Similarity=0.095  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHh----CC--
Q 013821          283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILA----NP--  354 (436)
Q Consensus       283 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~----~p--  354 (436)
                      ++.|..++.|+-... ..++.....++.+++..|               ......+ +++.|..++++++++    .+  
T Consensus         9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G---------------~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~   73 (278)
T PF08631_consen    9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG---------------KSLLSKKDKYEEAVKWLQRAYDILEKPGKMD   73 (278)
T ss_pred             HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH---------------HHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence            555555555554444 334444444444444444               4455556 777777777777766    21  


Q ss_pred             -C-------CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          355 -G-------DGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       355 -~-------~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                       .       ...++..++.++...+.  ..++|...++.+-.-.|+.+..+...-.++.+.++.+++.+.+.+++.-
T Consensus        74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence             1       12355666777766655  1233444444444455666666655555555567777777777666653

It is also involved in sporulation [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.36  Score=49.18  Aligned_cols=139  Identities=17%  Similarity=0.094  Sum_probs=103.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821          245 KGDLYRAEDYYNHATMADPGDGESWMQY--AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      .+...-++..+...+.+++.++..+...  ...+...+ +...+.-.+..++..+|.+..+..+++.             
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~L~~-------------  109 (620)
T COG3914          44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLA-DSTLAFLAKRIPLSVNPENCPAVQNLAA-------------  109 (620)
T ss_pred             cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccc-cchhHHHHHhhhHhcCcccchHHHHHHH-------------
Confidence            3444457777777788899888875544  54444454 4778899999999999999999999994             


Q ss_pred             HHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          323 AQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGDGEIMSQY------AKLVWELHHDHDKALCYFERAVQASPADSHVL  395 (436)
Q Consensus       323 ~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l------a~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~  395 (436)
                               .....|. +..+..+.+.+....|.+......+      +..+..+|+ ..++...+++++.+.|.++.+.
T Consensus       110 ---------ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         110 ---------ALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             ---------HHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhH
Confidence                     3333444 4445555556888899988877666      888888999 9999999999999999988776


Q ss_pred             HHHHHHHHHCCC
Q 013821          396 AAYACFLWETEE  407 (436)
Q Consensus       396 ~~la~~~~~~g~  407 (436)
                      ..+.....++..
T Consensus       180 ~~~~~~r~~~cs  191 (620)
T COG3914         180 GALMTARQEQCS  191 (620)
T ss_pred             hHHHHHHHHhcc
Confidence            666655444433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.99  E-value=0.27  Score=48.40  Aligned_cols=119  Identities=15%  Similarity=0.125  Sum_probs=80.3

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-------------------
Q 013821          292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-------------------  352 (436)
Q Consensus       292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------------------  352 (436)
                      ..+..+|-+.+++..++.++.                      .+|+.+.|.+.+++||-.                   
T Consensus        31 ~ll~~~PyHidtLlqls~v~~----------------------~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g   88 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYR----------------------QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG   88 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Confidence            345678999999999995554                      455555555555544321                   


Q ss_pred             -------CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          353 -------NPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPA-DSHV-LAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       353 -------~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                             .+.|-   .+++.....+.+.|. +..|.++++-.+.++|. |+.. +..+-....+.++++--++.++....
T Consensus        89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~-~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen   89 NCRLDYRRPENRQFFLALFRYIQSLGRRGC-WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             ccccCCccccchHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence                   12232   356667778889999 99999999999999999 7744 44455556677888777777776544


Q ss_pred             --------hCCCChhHHhhhh
Q 013821          421 --------VAPIRQGAVTTAN  433 (436)
Q Consensus       421 --------l~p~~~~~~~~a~  433 (436)
                              .-|++.-..+.|.
T Consensus       168 ~~~~~~~~~lPn~a~S~aLA~  188 (360)
T PF04910_consen  168 KCYRNWLSLLPNFAFSIALAY  188 (360)
T ss_pred             hhhhhhhhhCccHHHHHHHHH
Confidence                    3466666555443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.98  E-value=0.13  Score=41.29  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=66.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCHH
Q 013821          333 IQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYAKLVWELHHDHDKALCYFERAV-------QASPADSH  393 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~d~~eA~~~~~~al-------~~~p~~~~  393 (436)
                      ....|-|++|...+++|+++...            ++-.+..|+.++..+|+ |++++..-.++|       +++.+...
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccch
Confidence            34568999999999999988422            24567788899999999 998887766666       45666554


Q ss_pred             ----HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          394 ----VLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       394 ----~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                          +.+..+..+..+|+.++|+..|+.+-++
T Consensus        98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                4477888999999999999999998775

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.83  E-value=0.05  Score=37.29  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      +.++.+|..++++|+ |++|..+++.+|++.|++..+......
T Consensus         2 d~lY~lAig~ykl~~-Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGE-YEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            457788888888988 999999999999999988776554443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=95.73  E-value=1.6  Score=41.51  Aligned_cols=176  Identities=14%  Similarity=0.023  Sum_probs=95.6

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------C-
Q 013821          210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-----------------------D-  265 (436)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~-  265 (436)
                      +..+..+-++.-..+++++|+.+.+|..++.-  ...-..+|.+.+++|++....                       + 
T Consensus       196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv  273 (556)
T KOG3807|consen  196 RERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV  273 (556)
T ss_pred             HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence            34555666777777888888888777777652  222345666666666653110                       1 


Q ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821          266 -GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       266 -~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                       ..+-..++.|-.++|+ ..+|++.++...+-.|-.  ..++-++...+....-+.+...++.      -|........|
T Consensus       274 l~YIKRRLAMCARklGr-lrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa------kYDdislPkSA  346 (556)
T KOG3807|consen  274 LVYIKRRLAMCARKLGR-LREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA------KYDDISLPKSA  346 (556)
T ss_pred             hhHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhccccCcchH
Confidence             2334567777777775 888888888887777632  2233445444444433333333331      12223333444


Q ss_pred             HHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          343 EEYFSRAILAN-----PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA  399 (436)
Q Consensus       343 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la  399 (436)
                      .-+|..|+-..     .-.+++-...|..-.     -..|++.+.+|++.+|.-+..+..+-
T Consensus       347 ~icYTaALLK~RAVa~kFspd~asrRGLS~A-----E~~AvEAihRAvEFNPHVPkYLLE~k  403 (556)
T KOG3807|consen  347 AICYTAALLKTRAVSEKFSPETASRRGLSTA-----EINAVEAIHRAVEFNPHVPKYLLEMK  403 (556)
T ss_pred             HHHHHHHHHHHHHHHhhcCchhhhhccccHH-----HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence            44554443221     111222222222211     23577888889999988776665544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.73  E-value=0.34  Score=47.85  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-
Q 013821          252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-  330 (436)
Q Consensus       252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-  330 (436)
                      --.+++++..-|-.+++|+.....+...+ |-+.|+...++++...|.   ....++.++....+.+.....++.+.+. 
T Consensus       288 ~y~~~q~~~y~~~~~evw~dys~Y~~~is-d~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L  363 (660)
T COG5107         288 HYIHNQILDYFYYAEEVWFDYSEYLIGIS-DKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL  363 (660)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHhhcc-HHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence            34577888888889999999887766665 588999988888887776   5555666655555544444444433222 


Q ss_pred             -----------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 -----------------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE  369 (436)
Q Consensus       331 -----------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  369 (436)
                                                               ..-.+..-.+.|...|-++-+..-...+++..-|.+-+.
T Consensus       364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~  443 (660)
T COG5107         364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY  443 (660)
T ss_pred             HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence                                                     111122334555566665544432334555555555444


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          370 LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       370 ~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      ..+|+.-|-..|+-.+...|+.+.....+-..+...++...|...|++++.
T Consensus       444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence            334499999999999999999998888888899999999999999996554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.70  E-value=0.11  Score=47.13  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             hHHHHcCCH-------HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHH
Q 013821          331 LPIQSKGDL-------EGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLA  396 (436)
Q Consensus       331 ~~~~~~g~~-------~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-~~~~  396 (436)
                      |+|..+|+.       .+|.+.|.+++....      +...+++.+|.+..+.|+ +++|+.+|.+++....... ..+.
T Consensus       126 WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~  204 (214)
T PF09986_consen  126 WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLK  204 (214)
T ss_pred             HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHH
Confidence            666666663       456666666665532      225678889999999999 9999999999887543322 3455


Q ss_pred             HHHHHH
Q 013821          397 AYACFL  402 (436)
Q Consensus       397 ~la~~~  402 (436)
                      .+|.-+
T Consensus       205 ~~AR~~  210 (214)
T PF09986_consen  205 DMARDQ  210 (214)
T ss_pred             HHHHHH
Confidence            555443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.68  E-value=1.5  Score=44.11  Aligned_cols=178  Identities=11%  Similarity=0.059  Sum_probs=115.2

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      ++...-.++-.+-++.+++.... +..+++.++++|... ..++-...+++.++.+-++...-..|+..|.. . +...+
T Consensus        75 ~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i-k~sk~  150 (711)
T COG1747          75 IFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I-KKSKA  150 (711)
T ss_pred             HhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h-chhhH
Confidence            34344445555667777777654 667888899998887 66777788888888888888888888877665 3 37888


Q ss_pred             HHHHHHHHHhC-CC--CH---HHHHHHHHHHHHcc-CchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHH
Q 013821          287 LTYFERAALAA-PQ--DS---NILAAYACFLWEME-DDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEY  345 (436)
Q Consensus       287 ~~~~~~al~~~-p~--~~---~~~~~la~~~~~~g-~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~  345 (436)
                      ..+|.+++..- |.  +.   ++|..+-.   ..| +.+.-.....+.-..              .-|....+|.+|++.
T Consensus       151 a~~f~Ka~yrfI~~~q~~~i~evWeKL~~---~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I  227 (711)
T COG1747         151 AEFFGKALYRFIPRRQNAAIKEVWEKLPE---LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI  227 (711)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHH---hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence            88888887543 21  11   22222221   111 112222211111000              445667899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHHhCCCC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWE-------------------LHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~-------------------~g~d~~eA~~~~~~al~~~p~~  391 (436)
                      +...++.+..+..+.-++...+..                   .|+++.+++..|++.+-.+..+
T Consensus       228 lk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         228 LKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             HHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            999999998888887777766654                   3555778888888777665543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.66  E-value=3.7  Score=43.61  Aligned_cols=187  Identities=16%  Similarity=0.127  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHcCC
Q 013821          214 SAEAEEYYKRMIDEYPC----HPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPG--DG----ESWMQYAKLVWELHRD  282 (436)
Q Consensus       214 ~~~A~~~~~~al~~~P~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~d  282 (436)
                      ...|+.+++-+++..+-    .+.+++.+|.+++ ...+++.|..++++++.+...  ..    ...+.++.++...+  
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~--  114 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN--  114 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC--
Confidence            35678888887753221    3477899999998 799999999999999887643  22    23445677777765  


Q ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 013821          283 QHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEI  359 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~  359 (436)
                      ...|...++++++.... ....|...-.++.-                 ..+...+++..|++.++......  ..++.+
T Consensus       115 ~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~-----------------~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  115 PKAALKNLDKAIEDSETYGHSAWYYAFRLLKI-----------------QLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHHHHhccCchhHHHHHHHHHH-----------------HHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            44599999999987655 22223222222101                 22323389999999999988775  354443


Q ss_pred             HH----HHHHHHHHhcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH--HHHCCChHHHHHHHHHHHh
Q 013821          360 MS----QYAKLVWELHHDHDKALCYFERAVQASP----------ADSHVLAAYACF--LWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       360 ~~----~la~~~~~~g~d~~eA~~~~~~al~~~p----------~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~  420 (436)
                      ..    .-+.+....+. .+++++.++++.....          ....+|..+-.+  ....|+++.+...+++...
T Consensus       178 ~v~~~l~~~~l~l~~~~-~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~  253 (608)
T PF10345_consen  178 FVLASLSEALLHLRRGS-PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ  253 (608)
T ss_pred             HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            32    22344445565 6778887777743221          123455555443  5667777777766655444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.65  E-value=1.3  Score=47.42  Aligned_cols=192  Identities=16%  Similarity=0.082  Sum_probs=116.1

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHH
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----D--GESWMQ  271 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~  271 (436)
                      -.|.+....|++++|+++.+.++..-|.+.     .++..+|.+..-.|++++|..+..++.+....    .  ..+...
T Consensus       463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~  542 (894)
T COG2909         463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQ  542 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            346688889999999999999999877653     56788999999999999999999999887332    2  233344


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821          272 YAKLVWELHR-DQHRALTYFERAA----LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF  346 (436)
Q Consensus       272 la~~~~~~~~-d~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~  346 (436)
                      .+.++..+|. -+.+....|...-    ...|-........+.++                   +.+.+   ++.+..-.
T Consensus       543 ~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll-------------------~~~~r---~~~~~~ea  600 (894)
T COG2909         543 QSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL-------------------RAWLR---LDLAEAEA  600 (894)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH-------------------HHHHH---HhhhhHHh
Confidence            5666666651 0333333333322    22233333333344322                   22222   44444444


Q ss_pred             HHHHHh----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---H--HHHHHHH--HHHHHCCChHHHH
Q 013821          347 SRAILA----NPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---S--HVLAAYA--CFLWETEEDEDDS  412 (436)
Q Consensus       347 ~~al~~----~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---~--~~~~~la--~~~~~~g~~~eA~  412 (436)
                      ...+++    .|...   -+++.++.+.+..|+ +++|...+.....+.-..   +  .+.....  .....+|+..+|.
T Consensus       601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd-l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~  679 (894)
T COG2909         601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD-LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAA  679 (894)
T ss_pred             hhcchhhhhcccchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHH
Confidence            444443    33322   233578999999999 999999888876653221   1  1112222  2234467777777


Q ss_pred             HHHHH
Q 013821          413 KSSDQ  417 (436)
Q Consensus       413 ~~~~~  417 (436)
                      ....+
T Consensus       680 ~~l~~  684 (894)
T COG2909         680 EWLLK  684 (894)
T ss_pred             HHHHh
Confidence            66555

>smart00028 TPR Tetratricopeptide repeats

Probab=95.64  E-value=0.019  Score=33.55  Aligned_cols=30  Identities=37%  Similarity=0.476  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP  263 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  263 (436)
                      ++..+|.++...+++++|+..|+++++.+|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.61  E-value=1.2  Score=52.62  Aligned_cols=212  Identities=13%  Similarity=0.109  Sum_probs=127.4

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK-LVWELHRDQHR  285 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~d~~~  285 (436)
                      .....|+++.|..+|+++++.+|+....+...-...+..|.++..+...+-.....++...-|+.++. +-|..+. ++.
T Consensus      1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q-wD~ 1536 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ-WDL 1536 (2382)
T ss_pred             HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc-hhh
Confidence            45567999999999999999999888777877788888888888888777666655555555555442 2244432 444


Q ss_pred             HHHHHH-------------HH-HHhCCCCHHHH-HHHHHHH-------HHccCchHHHHHHHHHHHH-------------
Q 013821          286 ALTYFE-------------RA-ALAAPQDSNIL-AAYACFL-------WEMEDDGEDDKAQEEHIQV-------------  330 (436)
Q Consensus       286 A~~~~~-------------~a-l~~~p~~~~~~-~~la~~~-------~~~g~~~~A~~~~~~~~~~-------------  330 (436)
                      -..+.-             ++ +.....|..+- ..+....       ...+......+.|+-..+.             
T Consensus      1537 ~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1537 LESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred             hhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            433321             11 11111111111 0000000       0000000101111100000             


Q ss_pred             ---------------h--HHHHcCC---HHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          331 ---------------L--PIQSKGD---LEGAEEYFSRAILA---N----PGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       331 ---------------~--~~~~~g~---~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                                     |  -+...+.   ..+-+-.+++++..   +    ..-++.|...|++....|+ ++.|..++-.
T Consensus      1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~-~q~A~nall~ 1695 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH-LQRAQNALLN 1695 (2382)
T ss_pred             hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc-HHHHHHHHHh
Confidence                           1  1111111   23333344444322   3    2347899999999999999 9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      |.+..+  +.++...|+.+|.+|+...|+.++++.+...
T Consensus      1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            988874  5889999999999999999999999999764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.44  E-value=0.058  Score=53.93  Aligned_cols=89  Identities=28%  Similarity=0.268  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT  288 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~  288 (436)
                      +....|+..|.++++..|+....+.+++.++.+   .|+.-.|+.....|+.++|....+|+.|+.++..+++ +.+|+.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhh
Confidence            677889999999999999999999999998886   5677788888999999999999999999999999987 999999


Q ss_pred             HHHHHHHhCCCCH
Q 013821          289 YFERAALAAPQDS  301 (436)
Q Consensus       289 ~~~~al~~~p~~~  301 (436)
                      +...+....|.+.
T Consensus       467 ~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  467 CHWALQMSFPTDV  479 (758)
T ss_pred             hHHHHhhcCchhh
Confidence            9988888888544

>smart00028 TPR Tetratricopeptide repeats

Probab=95.38  E-value=0.029  Score=32.71  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      ++..+|.++..+++ +++|+..+++++++.|.
T Consensus         3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGD-YDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHHHHccCCC
Confidence            45555555555555 56666666655555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.37  E-value=0.028  Score=50.39  Aligned_cols=59  Identities=20%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD  265 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  265 (436)
                      ...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34566899999999999999999999999999999999999999999999999999986

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=1.4  Score=44.93  Aligned_cols=158  Identities=15%  Similarity=0.131  Sum_probs=101.2

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--------
Q 013821          245 KGDLYRAEDYYNHATMA------------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA-----APQ--------  299 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~--------  299 (436)
                      ...|++|...|.-+...            .|-+...+..++.++..++ |.+.|....+++|=.     .|.        
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qg-D~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQG-DREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            44577777777777664            2444667777777755554 577777777777632     121        


Q ss_pred             --------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Q 013821          300 --------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWEL  370 (436)
Q Consensus       300 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  370 (436)
                              +-..+..+-...                   ..+.+.|-|..|.++++-.+.++|. ++-+...+...|.-.
T Consensus       330 RL~y~~~eNR~FyL~l~r~m-------------------~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr  390 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYM-------------------QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR  390 (665)
T ss_pred             cCcccchhhHHHHHHHHHHH-------------------HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence                    111111111000                   5667889999999999999999998 887777777666655


Q ss_pred             cCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCC
Q 013821          371 HHDHDKALCYFERA-----VQASPADSHVLAAYACFLWETEE---DEDDSKSSDQFQQVAP  423 (436)
Q Consensus       371 g~d~~eA~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~l~p  423 (436)
                      .++|+=-+..++..     +..-|+.+. -..+|.+|.....   -..|...+.+|+.+.|
T Consensus       391 areYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  391 AREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            55476666666655     334465443 2456666766665   4568888888888766

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.28  E-value=0.43  Score=49.81  Aligned_cols=161  Identities=16%  Similarity=0.084  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNH------ATMA----DPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI  303 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~  303 (436)
                      |-.-|.+|.+..++++|+++|++      ++++    .|.. ...--.+|.-+...++ ++.|+..|-.+-.+       
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q-~daainhfiea~~~-------  735 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCL-------  735 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhH-------
Confidence            33445555566666677666654      2332    2221 1222334544455543 66666666443211       


Q ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821          304 LAAYACFLWEMEDDGEDDKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH  372 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  372 (436)
                       ..-.........+.+|+.+++..-.+           .-|...|+|+.|.+.|.++-.        ...-...|.+.|+
T Consensus       736 -~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~k  806 (1636)
T KOG3616|consen  736 -IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGK  806 (1636)
T ss_pred             -HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhcccc
Confidence             11112222333444444444321111           456667777777777765421        1122234455566


Q ss_pred             CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHH
Q 013821          373 DHDKALCYFERAVQASPADS-HVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       373 d~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                       |.+|.++-++..  .|+.. ..|...+.-+-+.|++.+|.+.|
T Consensus       807 -w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  807 -WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             -HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence             766665554432  23322 23344444455555555554443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=95.26  E-value=2.9  Score=39.90  Aligned_cols=175  Identities=11%  Similarity=-0.017  Sum_probs=101.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHH
Q 013821          244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA  323 (436)
Q Consensus       244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  323 (436)
                      +..+..+-+.....|++++|+.+.++..++.--..   -..+|.+.++++++......    +..+.....|...+|..-
T Consensus       196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~---Ti~~AE~l~k~ALka~e~~y----r~sqq~qh~~~~~da~~r  268 (556)
T KOG3807|consen  196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT---TIVDAERLFKQALKAGETIY----RQSQQCQHQSPQHEAQLR  268 (556)
T ss_pred             HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHH----hhHHHHhhhccchhhhhh
Confidence            33445556677778999999999999988854332   27889999999988643221    111112222222222211


Q ss_pred             ----HHHHHHH---hHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Q 013821          324 ----QEEHIQV---LPIQSKGDLEGAEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSH  393 (436)
Q Consensus       324 ----~~~~~~~---~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~  393 (436)
                          +.-|+++   .+..++|+..+|++.++...+-.|-.  ..++-+|-.++..+.- |.+....+.+.-.+. |....
T Consensus       269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavLakYDdislPkSA~  347 (556)
T KOG3807|consen  269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVLAKYDDISLPKSAA  347 (556)
T ss_pred             cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCcchHH
Confidence                1123333   77888999999999999988877732  2345566666666555 555554444433322 33332


Q ss_pred             HHHHHHHH-------------HHHCCC---hHHHHHHHHHHHhhCCCCh
Q 013821          394 VLAAYACF-------------LWETEE---DEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       394 ~~~~la~~-------------~~~~g~---~~eA~~~~~~al~l~p~~~  426 (436)
                      +.+.-+.+             -.+.|-   ...|++...++.+.+|+-+
T Consensus       348 icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVP  396 (556)
T KOG3807|consen  348 ICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVP  396 (556)
T ss_pred             HHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence            22222211             111111   2347888899999888754

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=95.18  E-value=0.82  Score=43.54  Aligned_cols=188  Identities=16%  Similarity=0.068  Sum_probs=118.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFER  292 (436)
Q Consensus       213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~  292 (436)
                      --++|+.+=+-.+.+-|..++++-.++.+.++..+...=...=-..+-+...+...|.        ..- .+++...+.+
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~--------r~l-I~eg~all~r  281 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWD--------RAL-IDEGLALLDR  281 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhh--------HHH-HHHHHHHHHH
Confidence            3467888777778888888888777776665433221110000001111222333222        111 5777888888


Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821          293 AALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH  371 (436)
Q Consensus       293 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  371 (436)
                      ++... |.-......++.+...                 .-....-+|..-..+|.-...+.|. +.+-.|.+.++.+..
T Consensus       282 A~~~~~pGPYqlqAAIaa~HA~-----------------a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~  343 (415)
T COG4941         282 ALASRRPGPYQLQAAIAALHAR-----------------ARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMRE  343 (415)
T ss_pred             HHHcCCCChHHHHHHHHHHHHh-----------------hcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhh
Confidence            87665 4444444444422222                 1122346788888888888888877 667777777777766


Q ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821          372 HDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      . .+.++...+.....  -......+...|.++.++|+.++|...|.+++.+.++-.+.
T Consensus       344 G-p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer  401 (415)
T COG4941         344 G-PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER  401 (415)
T ss_pred             h-HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence            6 78888877766554  23345677889999999999999999999999998775543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.09  E-value=0.72  Score=46.66  Aligned_cols=170  Identities=17%  Similarity=0.037  Sum_probs=93.2

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCH-PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL  287 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~  287 (436)
                      ...++++++..+.+.. ++-|.- .......+..+.++|-++.|+.+.        .++...+.||   .+.|+ ++.|.
T Consensus       272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~-L~~A~  338 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGN-LDIAL  338 (443)
T ss_dssp             HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT--HHHHH
T ss_pred             HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCC-HHHHH
Confidence            3457788876666411 111222 344667778888899888888764        3556666666   45553 66666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV  367 (436)
Q Consensus       288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  367 (436)
                      +..+     ..++...|..||                      .....+|+++-|+++|+++-        -+..|..+|
T Consensus       339 ~~a~-----~~~~~~~W~~Lg----------------------~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy  383 (443)
T PF04053_consen  339 EIAK-----ELDDPEKWKQLG----------------------DEALRQGNIELAEECYQKAK--------DFSGLLLLY  383 (443)
T ss_dssp             HHCC-----CCSTHHHHHHHH----------------------HHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred             HHHH-----hcCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence            5433     234788999999                      78888899999999988862        334455566


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhcC
Q 013821          368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA  436 (436)
Q Consensus       368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~a~~ya  436 (436)
                      .-.|+ .+.-.++...+.... +    +...-.+++.+|+.++.++.+.++=    .+++++..|..|+
T Consensus       384 ~~~g~-~~~L~kl~~~a~~~~-~----~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~ty~  442 (443)
T PF04053_consen  384 SSTGD-REKLSKLAKIAEERG-D----INIAFQAALLLGDVEECVDLLIETG----RLPEAALFARTYG  442 (443)
T ss_dssp             HHCT--HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHHHTT
T ss_pred             HHhCC-HHHHHHHHHHHHHcc-C----HHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHHhcC
Confidence            66777 444444444333322 2    1222234555677777766555432    2355555665553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.07  E-value=0.048  Score=51.09  Aligned_cols=87  Identities=13%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD  300 (436)
Q Consensus       221 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~  300 (436)
                      |.++....|+++..|..++....+.|-|.+--..|.++++.+|.+++.|..-+..-+....++..+...|.+++..+|+.
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            33444445566666666666666666666666666666666666666665533333333334666666666666666666


Q ss_pred             HHHHHHH
Q 013821          301 SNILAAY  307 (436)
Q Consensus       301 ~~~~~~l  307 (436)
                      +..|..+
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            6665443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.03  E-value=0.37  Score=47.94  Aligned_cols=127  Identities=15%  Similarity=0.108  Sum_probs=87.8

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT  288 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~  288 (436)
                      ...|+...|-.-+..++...|.++......+.+....|+|+.|...+.-+-..-..-..+...+-.-++.+++ +++|..
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r-~~~a~s  378 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR-WREALS  378 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh-HHHHHH
Confidence            3457777777778888888888888778888888888888888877766655544433444444445566665 777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      .-.-.+.-.-.++++...-+                      ......|-++++..++++.+.++|....
T Consensus       379 ~a~~~l~~eie~~ei~~iaa----------------------~sa~~l~~~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAA----------------------GSADALQLFDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHhccccCChhheeeec----------------------ccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence            66666655555555544333                      4455678889999999999999876433

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=2.7  Score=40.27  Aligned_cols=152  Identities=13%  Similarity=0.039  Sum_probs=88.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALA----AP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------  330 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------  330 (436)
                      .+..+|+..++ |.+|+......+.-    +.  .-.+++..-..++..+.+..+|...+..+-..              
T Consensus       133 rli~Ly~d~~~-YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  133 RLIRLYNDTKR-YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHhhHH-HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            35555555554 77776666555432    11  12333444455566666666665555432222              


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH---HHHHHHHHHhcCCHHHHHHHH--HHHHHhCCCCHHHHHH
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANP---GDGEIM---SQYAKLVWELHHDHDKALCYF--ERAVQASPADSHVLAA  397 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~---~~la~~~~~~g~d~~eA~~~~--~~al~~~p~~~~~~~~  397 (436)
                           .++....+|.-|..+|-+|++-..   ++..+.   -++-.+-..++. .++-...+  +.+++....+..+...
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~-~ddv~~lls~K~~l~y~g~~i~Amka  290 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL-PDDVAALLSAKLALKYAGRDIDAMKA  290 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHhccCcchHHHHH
Confidence                 555555888888888888887632   223333   333334445555 55544443  3456666666778888


Q ss_pred             HHHHHHH--CCChHHHHHHHHHHHhhCCC
Q 013821          398 YACFLWE--TEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       398 la~~~~~--~g~~~eA~~~~~~al~l~p~  424 (436)
                      ++.++.+  +.+|+.|+..|++-+..+|.
T Consensus       291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  291 VAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            8877654  45788888888887777664

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.01  E-value=1.5  Score=35.36  Aligned_cols=90  Identities=19%  Similarity=0.121  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013821          282 DQHRALTYFERAALAAPQ------------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA  349 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  349 (436)
                      -|++|...++++++....            +...+..|+..+..+|++++++...               +.|+.+|.+-
T Consensus        24 ~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA---------------~~aL~YFNRR   88 (144)
T PF12968_consen   24 AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA---------------DRALRYFNRR   88 (144)
T ss_dssp             -HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH---------------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH---------------HHHHHHHhhc
Confidence            366777777777665421            2334455664444444333332221               2334444444


Q ss_pred             HHhCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          350 ILANPGDGEI----MSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       350 l~~~p~~~~~----~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      =+++.+....    .++.+.++..+|+ .++|+..|+.+.+.
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr-~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGR-KEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence            4556665544    4678888999999 99999999998753

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.92  E-value=0.052  Score=48.75  Aligned_cols=60  Identities=20%  Similarity=0.272  Sum_probs=55.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      ...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+ ++.|.+.|++.++++|++.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~-~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE-FDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc-HHHHHHHHHHHHcCCcccc
Confidence            34567999999999999999999999999999999999999 9999999999999999865

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.87  E-value=0.19  Score=45.54  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             HcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHhCC--C----CHHH
Q 013821          335 SKGDLEGAEEYFSRAILAN----PG---DGEIMSQYAKLVWELHHDHD-------KALCYFERAVQASP--A----DSHV  394 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~d~~-------eA~~~~~~al~~~p--~----~~~~  394 (436)
                      ....+++|++.|.-|+-..    ..   -+..+..+|++|..+|+ .+       .|+..|+++++...  .    ...+
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3567888888888887541    12   25678889999998888 44       45555555554432  2    2367


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          395 LAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       395 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      .+.+|.+..+.|++++|.++|.+++...-...
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            88999999999999999999999998754333

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.81  E-value=0.11  Score=52.06  Aligned_cols=51  Identities=22%  Similarity=0.032  Sum_probs=25.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                      +.-.|+.....|++++|....+|+.|+.++.++++ +.+|+.+...+....|
T Consensus       426 d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  426 DSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALSCHWALQMSFP  476 (758)
T ss_pred             cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhhhHHHHhhcCc
Confidence            44444444455555555555555555555555555 5555554444444444

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.64  E-value=2.7  Score=38.78  Aligned_cols=48  Identities=23%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHH-CCChHHHHHHHHHHHhh
Q 013821          374 HDKALCYFERAVQ-----ASPADS---HVLAAYACFLWE-TEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       374 ~~eA~~~~~~al~-----~~p~~~---~~~~~la~~~~~-~g~~~eA~~~~~~al~l  421 (436)
                      .++|...|++|++     +.|.++   ....+++.+|+. +|+.++|++..++++..
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3677778888775     457776   344556666544 78999998888777653

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.62  E-value=0.19  Score=49.88  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013821          281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR  348 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~  348 (436)
                      ||...|-.-+..++...|.++......+.+...+|.++.+.+.+...-..            +.....|++++|.....-
T Consensus       303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~  382 (831)
T PRK15180        303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM  382 (831)
T ss_pred             cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence            46888888888999999999998888897777777777666665533222            445566777777766666


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       349 al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      .+...-+++++...-+-...++|- ++++..++++.+.++|...
T Consensus       383 ~l~~eie~~ei~~iaa~sa~~l~~-~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        383 MLSNEIEDEEVLTVAAGSADALQL-FDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HhccccCChhheeeecccHHHHhH-HHHHHHHHHHHhccCChhc
Confidence            666555666666555555566666 7777777777777766533

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=2.2  Score=41.94  Aligned_cols=172  Identities=14%  Similarity=0.117  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK------------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d  282 (436)
                      .++++.=.+.+..+|+...+|...=.++..            +.-.++-+.+...+++.+|+.-.+|+.+..++.+....
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            467777777788888877666554443332            22356678888899999999999999999998877654


Q ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          283 -QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       283 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                       +..-++..+++++.+|.+..+|...=.+...                  +-.......+=+++..+++..++.|-.+|.
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~------------------~~~~~~~~~~El~ftt~~I~~nfSNYsaWh  187 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ------------------AERSRNLEKEELEFTTKLINDNFSNYSAWH  187 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHH------------------HhcccccchhHHHHHHHHHhccchhhhHHH
Confidence             7899999999999999998888654422211                  111122356667888999999999999999


Q ss_pred             HHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          362 QYAKLVWELHHD-----------HDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       362 ~la~~~~~~g~d-----------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      +...++-.+-.+           ...-+..-..|+=.+|++..+|+..-+++-+
T Consensus       188 yRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  188 YRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            988887632110           2334455566777789998888775555443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=3.2  Score=42.97  Aligned_cols=90  Identities=8%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      .-.++..+|..++++|...+..-|.+      .....+++.||..+.+ .+.|.++++.|-+.+|.++-....+..+...
T Consensus       362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~  440 (872)
T KOG4814|consen  362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA  440 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            56778899999999999999887654      4567889999999999 9999999999999999998888888888888


Q ss_pred             CCChHHHHHHHHHHHhh
Q 013821          405 TEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       405 ~g~~~eA~~~~~~al~l  421 (436)
                      .|.-++|+.........
T Consensus       441 E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  441 EDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hcchHHHHHHHHHHHhh
Confidence            89999998887766654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.53  E-value=0.72  Score=38.83  Aligned_cols=77  Identities=14%  Similarity=0.015  Sum_probs=66.1

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED  408 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  408 (436)
                      ..-...++.+++...+...--+.|+.+++-..-|+++...|+ |.+|+..|+...+-.+..+.....++.|+.-+|+.
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGN-YDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            445568899999999988888899999999999999999999 99999999998888877787777788887777765

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.51  E-value=0.51  Score=41.43  Aligned_cols=102  Identities=19%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAY  307 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~l  307 (436)
                      .++..+|..|.+.|++++|++.|.++......   -.+.++.+..+....+ |+.....++.++-..-..  +....   
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~---  112 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERR---  112 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHH---
Confidence            56667777777777777777777776665433   2345555666656665 477777777776554322  22211   


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN  353 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  353 (436)
                      ..+-...|               ..+...++|.+|.+.|-.++...
T Consensus       113 nrlk~~~g---------------L~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  113 NRLKVYEG---------------LANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHH---------------HHHHHhchHHHHHHHHHccCcCC
Confidence            11111111               66667889999998887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=6  Score=40.61  Aligned_cols=156  Identities=15%  Similarity=0.106  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 013821          211 FDDSAEAEEYYKRMIDE------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----------------  261 (436)
Q Consensus       211 ~g~~~~A~~~~~~al~~------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------  261 (436)
                      ...|++|...|.-++..            .|-+.+.+..++.++..+|+.+-|....++++-.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45688899888888875            3567788999999999999998887777777542                 


Q ss_pred             ----CCCCHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHH
Q 013821          262 ----DPGDGESWMQ---YAKLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI  333 (436)
Q Consensus       262 ----~p~~~~~~~~---la~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  333 (436)
                          .|.+...|..   .-..+... |-+..|.++++-.+.++|. |+.....+..+|                     .
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~R-GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~---------------------A  388 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQR-GCWRTALEWCKLLLSLDPSEDPLGILYLIDIY---------------------A  388 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCcCCchhHHHHHHHH---------------------H
Confidence                2333333322   22222333 3589999999999999998 887766665433                     2


Q ss_pred             HHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC
Q 013821          334 QSKGDLEGAEEYFSRAIL-----ANPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASP  389 (436)
Q Consensus       334 ~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p  389 (436)
                      .+..+|+=-++.++..-.     .-|+. ..-..+|..|.....  +-+.|...+.+|+...|
T Consensus       389 LrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  389 LRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            344555555555555422     23332 222334444444333  13567777777777666

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.21  E-value=0.49  Score=52.59  Aligned_cols=148  Identities=18%  Similarity=0.124  Sum_probs=108.7

Q ss_pred             HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          216 EAEEYYK-RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       216 ~A~~~~~-~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      +++.++. ..-...|+....|..++.++...|++++|+.+-.++.-+        .|+....+.+++...+.... ...|
T Consensus       956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~-~~~a 1034 (1236)
T KOG1839|consen  956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN-LSGA 1034 (1236)
T ss_pred             hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC-ccch
Confidence            3344666 444568889999999999999999999999998887644        34556778888877676664 8889


Q ss_pred             HHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC----
Q 013821          287 LTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP----  354 (436)
Q Consensus       287 ~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----  354 (436)
                      +..+.++..+.        |.-.....++.                      .++...++++.|+.+.+.|+..+.    
T Consensus      1035 l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle----------------------~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHPPTALSFINLE----------------------LLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             hhhHHHHHHhhccccCCCCCchhhhhhHHH----------------------HHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99888887763        33344445666                      666677899999999999988642    


Q ss_pred             ----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          355 ----GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       355 ----~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                          .....+..++++...+++ +..|+...+..+.+
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~d-fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKD-FRNALEHEKVTYGI 1128 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHH-HHHHHHHHhhHHHH
Confidence                234566677777777777 77777777766544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.19  E-value=0.11  Score=48.71  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-H
Q 013821          286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY-A  364 (436)
Q Consensus       286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a  364 (436)
                      -+-.|.++....|+++..|..++                      ....+.|-|.+--..|.+++..+|.+++.|..- +
T Consensus        92 ~~f~~~R~tnkff~D~k~w~~y~----------------------~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~  149 (435)
T COG5191          92 KIFELYRSTNKFFNDPKIWSQYA----------------------AYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCA  149 (435)
T ss_pred             eeEeeehhhhcCCCCcHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeecc
Confidence            33455666667789999999888                      556667788888999999999999999999874 4


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          365 KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       365 ~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      .-+...++ ++.+..+|.+++..+|+.+.+|..+-.+
T Consensus       150 ~e~~~~an-i~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         150 FELFEIAN-IESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             chhhhhcc-HHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            44555666 9999999999999999999888765543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=2.2  Score=41.93  Aligned_cols=139  Identities=11%  Similarity=0.073  Sum_probs=107.2

Q ss_pred             HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      ...|.+ +++++.-.+.+..+|+...+|+..-.++....-           -+++-+.+...+++.+|+...+|+.+.  
T Consensus        39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~--  116 (421)
T KOG0529|consen   39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK--  116 (421)
T ss_pred             HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH--
Confidence            344554 567777788888899887777655444432211           256778889999999999999999999  


Q ss_pred             HHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 013821          311 LWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD---HDKALCYFERAV  385 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d---~~eA~~~~~~al  385 (436)
                                          +++.+.+  ++..=++..+++++.+|.+..+|...-.+......+   ..+-+++..+++
T Consensus       117 --------------------w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I  176 (421)
T KOG0529|consen  117 --------------------WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLI  176 (421)
T ss_pred             --------------------HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence                                5555443  478889999999999999999998887777665553   567788999999


Q ss_pred             HhCCCCHHHHHHHHHHHH
Q 013821          386 QASPADSHVLAAYACFLW  403 (436)
Q Consensus       386 ~~~p~~~~~~~~la~~~~  403 (436)
                      ..++.+-.+|.....++.
T Consensus       177 ~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  177 NDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             hccchhhhHHHHHHHHHH
Confidence            999999999988887766

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.01  E-value=0.45  Score=41.78  Aligned_cols=98  Identities=21%  Similarity=0.063  Sum_probs=72.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH----
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--GDGESW----  269 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~----  269 (436)
                      .++..+|..+.+.|+.++|++.|.++.+..-..   .+.++.+..+.+..+++..+..++.++-..-.  .+....    
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            678899999999999999999999988864322   37788899999999999999999999976532  333222    


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          270 MQYAKLVWELHRDQHRALTYFERAALAA  297 (436)
Q Consensus       270 ~~la~~~~~~~~d~~~A~~~~~~al~~~  297 (436)
                      ..-|..+... ++|.+|.+.|-.++.-.
T Consensus       117 ~~~gL~~l~~-r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQ-RDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHh-chHHHHHHHHHccCcCC
Confidence            1223223333 46999988887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=94.01  E-value=1.9  Score=45.82  Aligned_cols=204  Identities=13%  Similarity=0.070  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          218 EEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA  297 (436)
Q Consensus       218 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~  297 (436)
                      +..+++.++..|.-..-|..+.......|++-.-...+++++.-.+.+...|..++..+-..-+-.+.+...+-+++...
T Consensus       298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c  377 (881)
T KOG0128|consen  298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC  377 (881)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCC
Confidence            33455555566666677888888889999999999999999999999999999988554333332345556666666666


Q ss_pred             CCCHHHHHHHHHHHHHccCch-HHHHHHHHHHHH----------------------hHHHHcCCHHHHHHHHHHHHHh-C
Q 013821          298 PQDSNILAAYACFLWEMEDDG-EDDKAQEEHIQV----------------------LPIQSKGDLEGAEEYFSRAILA-N  353 (436)
Q Consensus       298 p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~-~  353 (436)
                      |-...+|...-..+.+.+... .....+..++..                      .+-.-...|..|..+|...... -
T Consensus       378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~  457 (881)
T KOG0128|consen  378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQL  457 (881)
T ss_pred             chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence            665555543332222222111 111111111111                      1112223455566666655544 2


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-VLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .....++..+|.+...+..+.+.|..++...+........ .|.....+-...|+...+..++++++..
T Consensus       458 Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  458 DTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             hhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            2235677778888877666688888888877665555444 7777777777888888888887777754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.95  E-value=0.15  Score=32.40  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      .++.++|.+|...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777777777777777777654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.91  E-value=0.68  Score=38.24  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          357 GEIMSQYAKLVWELHH--DHDKALCYFERAVQ-ASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~--d~~eA~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      .+..+++++++....+  |..+.+.+++..+. ..|+. -+.++.|+..++++++|+.++.+.+..++..|+...+..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            5667777777764432  36677888888776 44443 356677788888888888888888888888887776654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.83  E-value=1.7  Score=45.39  Aligned_cols=136  Identities=16%  Similarity=0.091  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      .++.++|..+..+-.|++|.++|.+.-..        -++..+++.... |++    ++.....-|++...+-.+|..+.
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~-f~~----LE~la~~Lpe~s~llp~~a~mf~  863 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLEL-FGE----LEVLARTLPEDSELLPVMADMFT  863 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHh-hhh----HHHHHHhcCcccchHHHHHHHHH
Confidence            44555555555555555555555443111        122333333321 222    23334445777777777787777


Q ss_pred             HccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          313 EMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      ..|.-++|.+.+.+.-..    .....+++|.+|++..++--  -|.-.......+.-+.+.++ .-+|++..+++
T Consensus       864 svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~-~~eaIe~~Rka  936 (1189)
T KOG2041|consen  864 SVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADAN-HMEAIEKDRKA  936 (1189)
T ss_pred             hhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcc-hHHHHHHhhhc
Confidence            777666666555422111    34445555666655443310  12212222223333444555 66777766665

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.71  E-value=0.6  Score=51.89  Aligned_cols=164  Identities=18%  Similarity=0.174  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 013821          235 LRNYAQLLQKKGDLYRAED------YYNHA-TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQ  299 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~  299 (436)
                      ....|......|.+.+|.+      ++.+. -.+.|.....+..++.++...+ |+++|+..-.++.-+.        |+
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~-d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG-DNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc-chHHHHHhcccceeeechhccCCCHH
Confidence            4455555666666666666      55533 3357888899999999999987 5999999888876443        34


Q ss_pred             CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc
Q 013821          300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELH  371 (436)
Q Consensus       300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g  371 (436)
                      ....+.+++                      ...+..+....|...+.+++.+        .|.-.....+++.++...+
T Consensus      1014 t~~~y~nla----------------------l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1014 TKLAYGNLA----------------------LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred             HHHHhhHHH----------------------HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH
Confidence            455556666                      5566666777788888877765        4555667788999988888


Q ss_pred             CCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          372 HDHDKALCYFERAVQASPA--------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      + ++.|+++++.|+...-.        ....+..++.+...++++..|+...+..+.+.
T Consensus      1072 e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1072 E-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred             H-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence            9 99999999999986421        23566778888888888888888877776653

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.63  E-value=0.92  Score=46.73  Aligned_cols=94  Identities=14%  Similarity=0.039  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                      .++.+-|.-.++..+|..++++|...+..-|.+      +.....++.||..+.+ .+.|.++++.|-+.+|.++.....
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHH
Confidence            345677888889999999999999999887654      5677889999999986 999999999999999999988888


Q ss_pred             HHHHHHHccCchHHHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEH  327 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~  327 (436)
                      ........++-++|+..+...
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~  454 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKI  454 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHH
Confidence            776666666666666555433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.60  E-value=6.9  Score=43.32  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=78.8

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKK----GD---LYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~----g~---~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ..+.....|++|+..|++...-.|.-.   ++.+..|..+..+    |+   +++|+.-|++. .-.|.-+--|...|.+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  561 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV  561 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence            366777889999999999999998754   7888888888753    33   56666666553 3457778888899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      |..++ ++++-+++|.-|++..|+++..-...-
T Consensus       562 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        562 YQRLG-EYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HHHhh-hHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            88887 599999999999999999876544333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.47  E-value=1.8  Score=35.85  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          231 HPLLLRNYAQLLQKKG---DLYRAEDYYNHATM-ADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA  305 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~  305 (436)
                      .....+++|.++....   +..+.+..++..++ ..|. ..+..+.++.-+++.++ |++++.+.+..++..|++.++..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHH
Confidence            3466777777777544   44567777777775 4444 45566677777777765 88888888888888888777654


Q ss_pred             H
Q 013821          306 A  306 (436)
Q Consensus       306 ~  306 (436)
                      .
T Consensus       110 L  110 (149)
T KOG3364|consen  110 L  110 (149)
T ss_pred             H
Confidence            3

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.45  E-value=0.19  Score=31.89  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      .++.++|.+|..+|+ +++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGR-YEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh-cchhhHHHHHHHHH
Confidence            345566666666666 66666666666554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.42  E-value=4.8  Score=34.93  Aligned_cols=70  Identities=10%  Similarity=0.117  Sum_probs=38.4

Q ss_pred             hHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL  402 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~  402 (436)
                      .++...|-|++-..-.+..- ..+|--..+.-.||..-++.|+ +..|..+|.+... +..-+....+.+.+.
T Consensus       140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd-~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD-FAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc-hHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            44555666666554443321 2234444566667777777777 7777777776655 333344444444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.02  E-value=0.83  Score=42.45  Aligned_cols=68  Identities=19%  Similarity=0.049  Sum_probs=60.4

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA  399 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la  399 (436)
                      ..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|. +.-|+..++..++..|+++.+-....
T Consensus       189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHHHH
Confidence            778888999999999999999999999999999999999999 99999999999999999876554433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.79  E-value=4  Score=38.43  Aligned_cols=64  Identities=11%  Similarity=0.123  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      ..++..++..+...|+ ++.++..+++.+..+|.+-.+|..+-..|...|+...|+..|++...+
T Consensus       153 ~~~l~~lae~~~~~~~-~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGR-ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4577778888888899 999999999999999999999999999999999999999999987764

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.76  E-value=7.7  Score=36.41  Aligned_cols=204  Identities=11%  Similarity=-0.006  Sum_probs=110.5

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhC----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEY----P----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGES  268 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~----P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  268 (436)
                      ..+++-..+..++++|+..|.+.+...    .    +.......++.+|...|++..-.+......+.     .|....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            445566667789999999999998752    1    12356789999999999987655544333221     1111112


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013821          269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR  348 (436)
Q Consensus       269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~  348 (436)
                      ...+-..+-.....++.-+..+...++........                -++.-.+.-...++++.|.|.+|+.....
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~----------------fLr~~Le~Kli~l~y~~~~YsdalalIn~  150 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK----------------FLRLELECKLIYLLYKTGKYSDALALINP  150 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            22111111111112233333333333221111110                01110011111677888999999888777


Q ss_pred             HHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCCChHHHHHHH
Q 013821          349 AILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-----PADSHVL--AAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       349 al~~------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-----p~~~~~~--~~la~~~~~~g~~~eA~~~~  415 (436)
                      .+.-      .+.-..++..-..+|....+ ..++..-+..|-...     |....+.  ..-|.....-.+|.-|..+|
T Consensus       151 ll~ElKk~DDK~~Li~vhllESKvyh~irn-v~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF  229 (421)
T COG5159         151 LLHELKKYDDKINLITVHLLESKVYHEIRN-VSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYF  229 (421)
T ss_pred             HHHHHHhhcCccceeehhhhhHHHHHHHHh-hhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHH
Confidence            6543      23445677777788888877 888777777665432     3222221  22244456667788888887


Q ss_pred             HHHHhhC
Q 013821          416 DQFQQVA  422 (436)
Q Consensus       416 ~~al~l~  422 (436)
                      -.+++-.
T Consensus       230 ~Ea~Egf  236 (421)
T COG5159         230 IEALEGF  236 (421)
T ss_pred             HHHHhcc
Confidence            7777643

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.76  E-value=8.4  Score=35.89  Aligned_cols=175  Identities=10%  Similarity=0.049  Sum_probs=103.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHc
Q 013821          245 KGDLYRAEDYYNHATMADPGDG----ESWMQYAKLVWELHRDQHRALTYFERAALAA-----PQDS-NILAAYACFLWEM  314 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~  314 (436)
                      ..++++|+.-|++++++.++..    .++..+..+.+.+++ |++-.+.|.+.+..-     .+.. .....+-......
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~-~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN-YKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            3478899999999999988754    466778888899886 999998888877542     1111 1111111111111


Q ss_pred             cCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHH
Q 013821          315 EDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYA  364 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la  364 (436)
                      .+.+--...++.-+..                  .+|+..++|.+-.+.+++.-.....            -.++|..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            1111112222211111                  6677777777777766665443211            123444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          365 KLVWELHHDHDKALCYFERAVQASPAD--SHVL----AAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       365 ~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~----~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .+|..+.+ ...-..+|++++.+...-  +.+.    -.=|..+.+.|++++|..-|-.|..-
T Consensus       199 QmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  199 QMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            56666666 677777888888765432  3222    22345577888888888777666654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.27  E-value=6.9  Score=46.59  Aligned_cols=151  Identities=15%  Similarity=0.097  Sum_probs=100.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---YP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ  271 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  271 (436)
                      .-|.+....-....+..+-+-.+++++-.   +|    .-...|...|.+....|+++.|..++-.|.+..  -+.+...
T Consensus      1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred             hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence            34555554444444555666666665542   22    345899999999999999999999999988877  6788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-------HHHHHH--HHHHHHHccCchHHHHHHHHHHHHhHHHHcCC--H
Q 013821          272 YAKLVWELHRDQHRALTYFERAALAA-PQD-------SNILAA--YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD--L  339 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~~~al~~~-p~~-------~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~--~  339 (436)
                      .|..+|..| |...|+..+++.+..+ |+.       +.....  .+.+....+               ......++  -
T Consensus      1708 ~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~---------------~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1708 RAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT---------------KYLEESGNFES 1771 (2382)
T ss_pred             HHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH---------------HHHHHhcchhH
Confidence            999999998 4999999999999765 220       111110  011111111               22223333  3


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          340 EGAEEYFSRAILANPGDGEIMSQYAKLV  367 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~~~~~~~la~~~  367 (436)
                      .+-+++|+.+.++.|.....++.+|..|
T Consensus      1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             HHHHHHHHHHHHHcccccCceeeHHHHH
Confidence            4567889999999998777777777544

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=92.16  E-value=5.8  Score=34.74  Aligned_cols=106  Identities=16%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             hhhhhhHHhhhh-hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          198 DDAGEVVDLIMP-NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-----KGDLYRAEDYYNHATMADPGDGESWMQ  271 (436)
Q Consensus       198 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~  271 (436)
                      +.+-..||..+. -+.++++|..+|+.-.+.+. .+..-+.+|..++.     .+++..|++.|..+..  -+.+.+...
T Consensus        34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~  110 (248)
T KOG4014|consen   34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRY  110 (248)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhh
Confidence            344444554432 24678888888888776654 56667777776653     5678999999998876  567888888


Q ss_pred             HHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          272 YAKLVWELHR------DQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       272 la~~~~~~~~------d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +|.+++.-..      |..+|++++.++.++.  +..+.+.|.
T Consensus       111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS  151 (248)
T KOG4014|consen  111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLS  151 (248)
T ss_pred             hhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHH
Confidence            8888765432      3678999999987664  455556665

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.13  E-value=3  Score=34.71  Aligned_cols=32  Identities=13%  Similarity=-0.011  Sum_probs=14.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +.+...+.+++.++..++.++..+..+..+|.
T Consensus        21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~   52 (140)
T smart00299       21 NLLEELIPYLESALKLNSENPALQTKLIELYA   52 (140)
T ss_pred             CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence            34444444444444444444444444444443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.00  E-value=2.6  Score=41.49  Aligned_cols=88  Identities=11%  Similarity=0.013  Sum_probs=63.3

Q ss_pred             HhhhhhCCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          205 DLIMPNFDDSAEAEEYYKRMIDEY--------PC-----HP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG  266 (436)
Q Consensus       205 g~~~~~~g~~~~A~~~~~~al~~~--------P~-----~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  266 (436)
                      +...+++++|..|.--|..++++-        |.     +.     .+-..+..||+.+++.+-|+.+..+.+.++|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            335666777777777777776642        11     11     2345678888889999999999888888999888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERA  293 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~a  293 (436)
                      .-+...|.|+..+.+ |.+|...+.-+
T Consensus       263 rnHLrqAavfR~LeR-y~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRRLER-YSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            888888888887776 77777655443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.94  E-value=11  Score=39.32  Aligned_cols=58  Identities=16%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ..|..+++-....=+++-|.+.|.+.-.+              ....+ --..+|.++.-.|++.+|.+.|.+
T Consensus       586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence            46888888888888888888888765331              11111 124567777778888888777765

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=0.78  Score=42.63  Aligned_cols=68  Identities=16%  Similarity=0.008  Sum_probs=39.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA  305 (436)
Q Consensus       237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~  305 (436)
                      ++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.+++. +.-|++.+...++..|+++.+-.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHH
Confidence            333445555666666666666666666666666666666665553 56666666666666666555443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.71  E-value=2.1  Score=31.87  Aligned_cols=57  Identities=7%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA  352 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  352 (436)
                      ++... +.++|+..++++++..++..+-+..+|.+.                   .+|...|+|.+++.+-.+-+++
T Consensus        16 LY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~-------------------qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   16 LYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLI-------------------QAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             Hhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34444 378888888888888888777777777655                   6777778887777766555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.67  E-value=0.7  Score=28.84  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 013821          234 LLRNYAQLLQKKGDLYRAEDY--YNHATMADP  263 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p  263 (436)
                      .++.+|..+..+|++++|+..  |.-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445555555556666666655  324444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.55  E-value=8.7  Score=33.42  Aligned_cols=54  Identities=17%  Similarity=0.137  Sum_probs=25.5

Q ss_pred             hhhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          208 MPNFDDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      +.+.+..++|+..|...-+..-..  ..+.+..|.+..+.|+...|+.+|..+-..
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d  123 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD  123 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence            334444555555555444332211  133444555555555555555555554443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.25  E-value=19  Score=36.70  Aligned_cols=189  Identities=7%  Similarity=-0.025  Sum_probs=123.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      .|-+...+..+-.++....++.-....+.+.+... ++..+++.++.+|...+  .++-...+++.++.+=++...-..|
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReL  138 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGREL  138 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHH
Confidence            34444556666666666666666667777777664 46678899999988873  6888999999999999999888889


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHHH
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-------------------EIMSQYAKLVW  368 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~  368 (436)
                      +..|.. ++..++...+.+++...  ....+...-.+...+..+.-+++.                   .+.+.--..++
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            877766 66777777777655431  111112222233333333333332                   22222222334


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCChHHHHHHHHHHHhhC
Q 013821          369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE--------------------TEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       369 ~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~eA~~~~~~al~l~  422 (436)
                      ....|+.+|++.+...++.+..+..+..++...+..                    -.++.+++.-|++.+.++
T Consensus       216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~  289 (711)
T COG1747         216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFD  289 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheec
Confidence            445569999999999999999988888877777655                    344556666666655543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.66  E-value=1.1  Score=34.64  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          333 IQSKGDLEGAEEYFSRAILANPG---------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      ..+.|+|.+|++.+.+.+.....         ...++.++|.+....|+ +++|+..+++++.+...
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Confidence            45689999998888888776332         13567889999999999 99999999999987543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.65  E-value=1.1  Score=34.80  Aligned_cols=54  Identities=22%  Similarity=0.117  Sum_probs=38.8

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD  262 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  262 (436)
                      .+.|++.+|++.+.+..+....         ...++.++|.++...|++++|+..+++++.+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4558889998888877764321         13556777888888888888888888887763

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.43  E-value=6.5  Score=38.62  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILA----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      +.|...+.|++|.....++.--    +...+..++++|.+..-+++ |..|.++|-+|+...|.+.
T Consensus       217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-YssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-YSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-hhHHHHHHHHHHHhCcchh
Confidence            5667778888888777766411    11235567788888888888 9999999999999988743

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.41  E-value=0.91  Score=42.64  Aligned_cols=62  Identities=21%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      |+.+|.+|+.+.|.++..++.+|.+....|+ .-.|+-+|-+++-..-..+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7899999999999999999999999999988 8999999999997765568888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.40  E-value=2  Score=31.95  Aligned_cols=59  Identities=8%  Similarity=0.037  Sum_probs=38.1

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHH
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN---YAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      +..|.-++...+.++|+..++++++..++..+.+..   +..+|...|+|.+.+.+..+-+.
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666677888888888888877766654444   44455667777777766544433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.27  E-value=2.1  Score=43.33  Aligned_cols=133  Identities=17%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013821          240 QLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE  319 (436)
Q Consensus       240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  319 (436)
                      +.....++++++....+. -++-|.-+.-+.....-|.+..|-++.|+...        .|+...+.|+           
T Consensus       269 k~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA-----------  328 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA-----------  328 (443)
T ss_dssp             HHHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH-----------
T ss_pred             HHHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH-----------
Confidence            344567888888777641 22334433333333333333334355554433        2345555444           


Q ss_pred             HHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCCCC
Q 013821          320 DDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ--------ASPAD  391 (436)
Q Consensus       320 A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~--------~~p~~  391 (436)
                                    .+.|+++.|.+..++     -++...|..||......|+ ++-|..+|+++-.        .--.+
T Consensus       329 --------------l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d~~~L~lLy~~~g~  388 (443)
T PF04053_consen  329 --------------LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN-IELAEECYQKAKDFSGLLLLYSSTGD  388 (443)
T ss_dssp             --------------HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT-HHHHHHHHHHCT-
T ss_pred             --------------HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCccccHHHHHHhCC
Confidence                          578999999876533     3578899999999999999 9999999998522        12233


Q ss_pred             HHHHHHHHHHHHHCCChHHHH
Q 013821          392 SHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~eA~  412 (436)
                      ...+..++......|++.-|.
T Consensus       389 ~~~L~kl~~~a~~~~~~n~af  409 (443)
T PF04053_consen  389 REKLSKLAKIAEERGDINIAF  409 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHH
Confidence            444455555555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.89  E-value=1.1  Score=42.04  Aligned_cols=62  Identities=24%  Similarity=0.233  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      |+.+|.+|+.+.|.+...|..+|.++...|+.=.|+-+|-|++......+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997655567788888877665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.67  E-value=0.46  Score=27.10  Aligned_cols=23  Identities=26%  Similarity=0.189  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.63  E-value=15  Score=32.84  Aligned_cols=56  Identities=18%  Similarity=0.202  Sum_probs=40.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHH
Q 013821          355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       355 ~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~  412 (436)
                      ++++..+.||..|.+.  |.++|+.++.+++++.+.    +++++..|+.++.++|+++.|.
T Consensus       139 ~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4567777777666643  378888888888877543    3677888888888888887774

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.46  E-value=5.4  Score=39.36  Aligned_cols=90  Identities=11%  Similarity=0.003  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-G-----D-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD  300 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~  300 (436)
                      +...+..+..-...|++..|++++.+...+.. .     +     ..+.-.+..||..+++ .+-|+..-.+.+-++|..
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk-pdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK-PDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC-CchHHHHHhhhhhcCcch
Confidence            33444444444445555555555555544321 1     1     1233345666666654 666666666666666666


Q ss_pred             HHHHHHHHHHHHHccCchHHHH
Q 013821          301 SNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       301 ~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      ..-+...+.+...+.+|.+|.+
T Consensus       262 frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666655544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.22  E-value=3.8  Score=38.61  Aligned_cols=56  Identities=13%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      ..+...|+++.+++.+++.+..+|.+...|..+-.+|...|+ ...|+..|++.-..
T Consensus       161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l~~~  216 (280)
T COG3629         161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHHHHHHHH
Confidence            677778899999999999999999999999999999999998 89999998887653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.11  E-value=3.7  Score=43.83  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=58.4

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCH-PLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHRDQH  284 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~d~~  284 (436)
                      ++.+...|.-|+.+.+.- ..+++. ..++..+|..++.+|++++|...|-+++.. +|...--.+      ....+ ..
T Consensus       343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~-Ik  414 (933)
T KOG2114|consen  343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQR-IK  414 (933)
T ss_pred             HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHH-HH
Confidence            444555566665544332 122222 367889999999999999999999998864 332211000      11111 22


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821          285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ  324 (436)
Q Consensus       285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  324 (436)
                      +=..+++...+..-.+.+-...|-.+|.++++.++-.+.+
T Consensus       415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI  454 (933)
T KOG2114|consen  415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFI  454 (933)
T ss_pred             HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHH
Confidence            2233333333333334444445556666666655544433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.89  E-value=1.6  Score=27.15  Aligned_cols=32  Identities=13%  Similarity=0.135  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC
Q 013821          358 EIMSQYAKLVWELHHDHDKALCY--FERAVQASPA  390 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~--~~~al~~~p~  390 (436)
                      +.++.+|..+...|+ +++|+..  |+-+..+++.
T Consensus         2 e~~y~~a~~~y~~~k-y~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGK-YDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhccc
Confidence            345556666666666 6666666  3355555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=88.60  E-value=9  Score=39.94  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             HHhhhhhCCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRM------IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM--ADPGDGESWMQYAKL  275 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~a------l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~  275 (436)
                      ++.++.-.|.+.+|.++|.+.      ++..-  ..-.+.+++-+...|..++-....++-.+  .+-+.+.+   -|.+
T Consensus       638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT--DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka---AAEm  712 (1081)
T KOG1538|consen  638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYT--DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA---AAEM  712 (1081)
T ss_pred             HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---HHHH
Confidence            444555556666666666542      22211  01234556666666666555554444322  22222222   1223


Q ss_pred             HHHHcCCHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHH
Q 013821          276 VWELHRDQHRALTY----------FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEG  341 (436)
Q Consensus       276 ~~~~~~d~~~A~~~----------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~  341 (436)
                      +...| +.++|+..          ++-+-+++..+.+.+...+..+.....+.-|.+++...-..    .++...++|.+
T Consensus       713 LiSaG-e~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~e  791 (1081)
T KOG1538|consen  713 LISAG-EHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDE  791 (1081)
T ss_pred             hhccc-chhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchH
Confidence            33333 34555442          22233344455566666666666666677777666644332    66677888988


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      |....++.-+.-   +.+++-.|+.+....+ +++|.+.|-+|
T Consensus       792 AFalAe~hPe~~---~dVy~pyaqwLAE~Dr-FeEAqkAfhkA  830 (1081)
T KOG1538|consen  792 AFALAEKHPEFK---DDVYMPYAQWLAENDR-FEEAQKAFHKA  830 (1081)
T ss_pred             hHhhhhhCcccc---ccccchHHHHhhhhhh-HHHHHHHHHHh
Confidence            877665533322   3577777887777777 88887777665

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.59  E-value=16  Score=32.04  Aligned_cols=168  Identities=18%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          230 CHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-H---RDQHRALTYFERAALAAPQDSNIL  304 (436)
Q Consensus       230 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~---~d~~~A~~~~~~al~~~p~~~~~~  304 (436)
                      ..++.-..||..+. -+.++++|..+|+.-..-+. .+...+.+|..++.- +   +++..|++.|..+..  .+.+.+.
T Consensus        32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC  108 (248)
T KOG4014|consen   32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC  108 (248)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence            45677777887665 46788888888876654432 456667777443321 1   257899999998876  5678888


Q ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------c
Q 013821          305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------H  371 (436)
Q Consensus       305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g  371 (436)
                      ..++.+++.-...                 +.+  +..+|.+++.++-.++  +..+.++|...++.-           |
T Consensus       109 ~~~gLl~~~g~~~-----------------r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g  169 (248)
T KOG4014|consen  109 RYLGLLHWNGEKD-----------------RKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEG  169 (248)
T ss_pred             hhhhhhhccCcCC-----------------ccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCC
Confidence            8888666543221                 223  3678888888886554  445555555544332           1


Q ss_pred             ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHhh
Q 013821          372 ------------HDHDKALCYFERAVQASPADSHVLAAYACFLWET----EEDEDDSKSSDQFQQV  421 (436)
Q Consensus       372 ------------~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l  421 (436)
                                  +|.+.|.++--+|-+++  ++.+..++.+.|..-    .+.++|..+-.+++++
T Consensus       170 ~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  170 KPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             CCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence                        22566666666665554  567777877776442    2467788888888876

>PRK12798 chemotaxis protein; Reviewed

Probab=88.59  E-value=28  Score=34.66  Aligned_cols=109  Identities=12%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          222 KRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ  299 (436)
Q Consensus       222 ~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~  299 (436)
                      +..+..++. +.+.-...|...+-.|+..+|.+.+...-.. .|...-.+..|.........|..+|++.|+.+--+.|.
T Consensus       101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG  180 (421)
T PRK12798        101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG  180 (421)
T ss_pred             HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc
Confidence            344444432 4455566666677788888887777654322 23333344444444444445688888888888877776


Q ss_pred             C---HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          300 D---SNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       300 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      -   ..++..-..+....|+.++...+..+|+.+
T Consensus       181 TLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR  214 (421)
T PRK12798        181 TLVEEAALRRSLFIAAQLGDADKFEALARNYLRR  214 (421)
T ss_pred             hHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH
Confidence            3   223333332334444444444444444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.39  E-value=18  Score=32.28  Aligned_cols=72  Identities=21%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----CH
Q 013821          283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----DG  357 (436)
Q Consensus       283 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~  357 (436)
                      -++|...|-++-... -++++..+.+|                      . |+...+.++|+..+.++|++.+.    ++
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLA----------------------t-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~  178 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALA----------------------T-YYTKRDPEKTIQLLLRALELSNPDDNFNP  178 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------H-HHHccCHHHHHHHHHHHHHhcCCCCCCCH
Confidence            366666665543221 24677777777                      3 33468999999999999999543    58


Q ss_pred             HHHHHHHHHHHHhcCCHHHHH
Q 013821          358 EIMSQYAKLVWELHHDHDKAL  378 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~  378 (436)
                      +++..|+.++.++|+ ++.|-
T Consensus       179 eil~sLas~~~~~~~-~e~AY  198 (203)
T PF11207_consen  179 EILKSLASIYQKLKN-YEQAY  198 (203)
T ss_pred             HHHHHHHHHHHHhcc-hhhhh
Confidence            999999999999999 98874

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.30  E-value=0.6  Score=26.60  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHCCChHHHHHHH
Q 013821          394 VLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       394 ~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      +...+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.25  E-value=22  Score=33.21  Aligned_cols=78  Identities=18%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHH-HHhcCC
Q 013821          299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY----FSRAILANPGDGEIMSQYAKLV-WELHHD  373 (436)
Q Consensus       299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~-~~~g~d  373 (436)
                      .++..+..+|..+++.+++.+|..++          -.+.-..+...    +.-..+..|...+.+...+.+. ...++ 
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf----------l~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n-  156 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHF----------LLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN-  156 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHH----------HTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB-
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHH----------HhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC-
Confidence            47899999999999999888876554          45555554443    2223345677777777666554 45677 


Q ss_pred             HHHHHHHHHHHHHh
Q 013821          374 HDKALCYFERAVQA  387 (436)
Q Consensus       374 ~~eA~~~~~~al~~  387 (436)
                      ...|...+...++.
T Consensus       157 ~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  157 LRDANELFDTFTSK  170 (260)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999887776655

; PDB: 3LKU_E 2WPV_G.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.18  E-value=14  Score=40.96  Aligned_cols=91  Identities=15%  Similarity=0.070  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc--CCHHHHHHHHHHHHHhCCCCH
Q 013821          283 QHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK--GDLEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~  357 (436)
                      |++|+..|++...-.|+.   .++.+..|..+....                 -...  ..+++|+.-|++.- -.|.-+
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~  552 (932)
T PRK13184        491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKA-----------------SEQGDPRDFTQALSEFSYLH-GGVGAP  552 (932)
T ss_pred             HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHH-----------------HhcCChHHHHHHHHHHHHhc-CCCCCc
Confidence            666666666666666543   344455554433321                 1111  13445555554432 223334


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      --|...|.+|..+|+ +++-+++|.-|++..|.++
T Consensus       553 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        553 LEYLGKALVYQRLGE-YNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             hHHHhHHHHHHHhhh-HHHHHHHHHHHHHhcCCCC
Confidence            445555555555555 6666666666666555554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.75  E-value=1  Score=28.44  Aligned_cols=28  Identities=11%  Similarity=0.135  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      ++..+|.+-...++|++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4555555555666666666555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.35  E-value=9.7  Score=35.88  Aligned_cols=52  Identities=17%  Similarity=0.114  Sum_probs=25.6

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                      ..|...|.+.+|+.+.++++.++|-+...+..+..++..+|+ --.|++.|++
T Consensus       287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khyer  338 (361)
T COG3947         287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHYER  338 (361)
T ss_pred             HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHHHH
Confidence            344445555555555555555555555555555555555554 3444444443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.12  E-value=5.9  Score=35.72  Aligned_cols=60  Identities=20%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG  266 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  266 (436)
                      -+.+.+..++|+...+.-++.+|.+......+-+.+...|+|++|...++-+-++.|++.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            456678999999999999999999999999999999999999999999999999999863

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.02  E-value=5.9  Score=40.87  Aligned_cols=83  Identities=17%  Similarity=-0.003  Sum_probs=53.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH---
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYA---  399 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--------p~~~~~~~~la---  399 (436)
                      .+..+.|+++.|.....++     ++..-|..||.+....++ +..|.++|.++-...        ..+.+.+..+|   
T Consensus       645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~  718 (794)
T KOG0276|consen  645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA  718 (794)
T ss_pred             hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Confidence            5556778888776655443     556778888888888888 888888888864321        22333333333   


Q ss_pred             ----------HHHHHCCChHHHHHHHHHHH
Q 013821          400 ----------CFLWETEEDEDDSKSSDQFQ  419 (436)
Q Consensus       400 ----------~~~~~~g~~~eA~~~~~~al  419 (436)
                                .+++..|++++..+.+....
T Consensus       719 ~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  719 KKQGKNNLAFLAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             HhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence                      24677788888777665543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.23  E-value=17  Score=33.67  Aligned_cols=80  Identities=19%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Q 013821          339 LEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETE  406 (436)
Q Consensus       339 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g  406 (436)
                      -...++++.+|+.....      -..+...+|.-|+..|+ +++|+++|+.+.......      ..++..+..|+..+|
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            34556666666655332      13466789999999999 999999999997654432      267788889999999


Q ss_pred             ChHHHHHHHHHHH
Q 013821          407 EDEDDSKSSDQFQ  419 (436)
Q Consensus       407 ~~~eA~~~~~~al  419 (436)
                      +.++.+.+.-+.+
T Consensus       233 ~~~~~l~~~leLl  245 (247)
T PF11817_consen  233 DVEDYLTTSLELL  245 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9998877655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=85.78  E-value=2  Score=45.17  Aligned_cols=185  Identities=12%  Similarity=0.065  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCC-CH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVW--ELHRDQHRALTYFERAALAAPQ-DS  301 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~--~~~~d~~~A~~~~~~al~~~p~-~~  301 (436)
                      .++...++-..|....+|+.-++..+..-. -|+      ...+.+.++.++-  ...||-++|+...-.+++.... .+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            457777888888888899887777665433 332      1222333333332  2335678899988888887644 45


Q ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821          302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF  381 (436)
Q Consensus       302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~  381 (436)
                      +.+..-|.+|.++--.             .-|...+..+.|+++|++|++..|. ...=.+++.++...|+.++...++-
T Consensus       279 Dm~Cl~GRIYKDmF~~-------------S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fens~Elq  344 (1226)
T KOG4279|consen  279 DMYCLCGRIYKDMFIA-------------SNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFENSLELQ  344 (1226)
T ss_pred             ceeeeechhhhhhhhc-------------cCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhccchHHHH
Confidence            5555555444332100             2344557788999999999999997 3445667777777777566666655


Q ss_pred             HHHHHhCC-----CCH---HHHHHHHHH---HHHCCChHHHHHHHHHHHhhC-CCChhHHh
Q 013821          382 ERAVQASP-----ADS---HVLAAYACF---LWETEEDEDDSKSSDQFQQVA-PIRQGAVT  430 (436)
Q Consensus       382 ~~al~~~p-----~~~---~~~~~la~~---~~~~g~~~eA~~~~~~al~l~-p~~~~~~~  430 (436)
                      .-.+.++.     ...   ..|+..|..   -.-.+++.+|++.-++..++. |.+....+
T Consensus       345 ~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~  405 (1226)
T KOG4279|consen  345 QIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST  405 (1226)
T ss_pred             HHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence            55555431     111   222223322   233578889998888888885 55555444

>smart00101 14_3_3 14-3-3 homologues

Probab=85.76  E-value=30  Score=32.05  Aligned_cols=56  Identities=5%  Similarity=-0.066  Sum_probs=32.8

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDE-YP--CHPLLLRNYAQLLQ-KKGDLYRAEDYYNH  257 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~-~P--~~~~~~~~la~~~~-~~g~~~~A~~~~~~  257 (436)
                      ..++.+..+.++|++.+.+.+++++. +|  -+.+-...+..+|. ..|....+...+..
T Consensus         5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s   64 (244)
T smart00101        5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS   64 (244)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence            34556666667777777777777665 33  23344555555554 35666666666554

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.51  E-value=32  Score=32.19  Aligned_cols=196  Identities=15%  Similarity=0.115  Sum_probs=99.3

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh------CCCCHHHHHH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLY-RAEDYYNHATMA------DPGDGESWMQ  271 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~------~p~~~~~~~~  271 (436)
                      -+..+.+.|++.-|.++..-.++.     .+.+.....+++.++...+.-+ +-..+.+++++-      .-.++..+..
T Consensus        16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~   95 (260)
T PF04190_consen   16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL   95 (260)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred             HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence            344566667766665555444442     2334455567776666554322 233344444432      2247899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013821          272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILA--AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA  349 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  349 (436)
                      +|..+++.+. +.+|..+|-..     ++.....  .+.......+...+..-.+.+++  ..|...++...|...+..-
T Consensus        96 ~a~~~~~e~~-~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV--L~yL~l~n~~~A~~~~~~f  167 (260)
T PF04190_consen   96 LAEKLWKEGN-YYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAV--LQYLCLGNLRDANELFDTF  167 (260)
T ss_dssp             HHHHHHHTT--HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH--HHHHHTTBHHHHHHHHHHH
T ss_pred             HHHHHHhhcc-HHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHHHhcCHHHHHHHHHHH
Confidence            9999999874 99999888543     2222222  23333334455555544444554  6677889999998877666


Q ss_pred             HHh----CCC----------CHHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          350 ILA----NPG----------DGEIMSQYAKLV--WELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       350 l~~----~p~----------~~~~~~~la~~~--~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                      ++.    +|+          ....++.+-.++  .+.+.  -|..-.+.|+..|+.+|.....+..+|..|+....
T Consensus       168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~  243 (260)
T PF04190_consen  168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP  243 (260)
T ss_dssp             HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred             HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence            655    332          222222222221  22222  02233344444555667777888888988887554

; PDB: 3LKU_E 2WPV_G.

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=85.40  E-value=35  Score=42.68  Aligned_cols=137  Identities=13%  Similarity=0.039  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC---HHHH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD---LEGA  342 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~---~~~A  342 (436)
                      ++.+...|..+.+.++ .++|-+.|..|++++..-..+|..+|.....                 ......++   -..|
T Consensus      2812 aeff~lkG~f~~kL~~-~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~-----------------~f~~e~~ni~~a~~a 2873 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK-FEEANKAFSAAVQIDDGLGKAWAEWGKYLDN-----------------RFNKEPVNISFACNA 2873 (3550)
T ss_pred             HHHHHhhhHHHHHhcC-cchhHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------------HHhccCcccHHHHHH
Confidence            5677778888888875 8999999999999998889999988855443                 22222222   2456


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHCCChHHHHHHHHH
Q 013821          343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF-----LWETEEDEDDSKSSDQ  417 (436)
Q Consensus       343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~-----~~~~g~~~eA~~~~~~  417 (436)
                      +.+|-+|....- +..+.-.++.+++-+.  +++|...+.+++...-....+|..+.++     ....++...+...+.+
T Consensus      2874 vsCyLqA~~~~~-~skaRk~iakvLwLls--~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~k 2950 (3550)
T KOG0889|consen 2874 VSCYLQAARLYN-SSKARKLIAKVLWLLS--FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIK 2950 (3550)
T ss_pred             HHHHHHHhcccc-chhhHHHHHHHHHHHH--hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHH
Confidence            777777765543 3567777777777663  4556555555555443333233222222     2233444444444444


Q ss_pred             HHhhCC
Q 013821          418 FQQVAP  423 (436)
Q Consensus       418 al~l~p  423 (436)
                      .-+..|
T Consensus      2951 ia~~yP 2956 (3550)
T KOG0889|consen 2951 IAKSYP 2956 (3550)
T ss_pred             HHHhch
Confidence            444443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.39  E-value=7.5  Score=38.68  Aligned_cols=61  Identities=8%  Similarity=-0.117  Sum_probs=48.1

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      +.+++-++..-+|||..|++.++..--        ..+-+...++..|-+|..+++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788999999999998765311        1233457789999999999999999999998864

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.03  E-value=2.6  Score=24.60  Aligned_cols=26  Identities=35%  Similarity=0.575  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          248 LYRAEDYYNHATMADPGDGESWMQYA  273 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~~~~~la  273 (436)
                      ++.|...|++++...|..+.+|..++
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            34444444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.85  E-value=3  Score=24.35  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL  242 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~  242 (436)
                      |+.+.|..+|++++...|..+..|..++...
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            5678999999999999999999998887653

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=84.84  E-value=43  Score=33.16  Aligned_cols=133  Identities=14%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEY----P-----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPG-DGESWM  270 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~----P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~  270 (436)
                      ..+....++.+|.++-+..+..-    -     -.+..|+.+..+|...|+...-...+...+..     +.. .+...+
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            34555688888888777665521    1     12466888888888899977766666655543     111 233444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI  350 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  350 (436)
                      .+-..|...+- |++|.+...++.-  |+... -..++..++.+|               .+..-+++|..|.+++-+|+
T Consensus       214 ~LLr~yL~n~l-ydqa~~lvsK~~~--pe~~s-nne~ARY~yY~G---------------rIkaiqldYssA~~~~~qa~  274 (493)
T KOG2581|consen  214 LLLRNYLHNKL-YDQADKLVSKSVY--PEAAS-NNEWARYLYYLG---------------RIKAIQLDYSSALEYFLQAL  274 (493)
T ss_pred             HHHHHHhhhHH-HHHHHHHhhcccC--ccccc-cHHHHHHHHHHh---------------hHHHhhcchhHHHHHHHHHH
Confidence            55556665553 8888887776642  22110 012333333333               78888999999999999999


Q ss_pred             HhCCCCH
Q 013821          351 LANPGDG  357 (436)
Q Consensus       351 ~~~p~~~  357 (436)
                      ...|.+.
T Consensus       275 rkapq~~  281 (493)
T KOG2581|consen  275 RKAPQHA  281 (493)
T ss_pred             HhCcchh
Confidence            9999743

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.29  E-value=2.4  Score=26.79  Aligned_cols=28  Identities=14%  Similarity=0.320  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      ++..||.+-...++ |++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~-f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENEN-FEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence            44445555555544 55555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=83.06  E-value=50  Score=33.24  Aligned_cols=25  Identities=12%  Similarity=-0.015  Sum_probs=20.9

Q ss_pred             HHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          399 ACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       399 a~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      |.-+.+.|....|..+|.+++.+..
T Consensus       377 g~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  377 GHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhC
Confidence            4668889999999999999988753

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.62  E-value=34  Score=33.95  Aligned_cols=62  Identities=21%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE--SWMQY--AKLVWELHRDQHRALTYFERAALA  296 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~d~~~A~~~~~~al~~  296 (436)
                      .....+..++..++|..|...+......-|....  .+..+  |..+|..- |+.+|.+.+++.+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence            3455666677788888888888887765333222  23333  33334444 367777777766554

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.57  E-value=27  Score=34.62  Aligned_cols=63  Identities=13%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP--LLLRNYAQLLQ--KKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~--~~g~~~~A~~~~~~al~~  261 (436)
                      ......+..+++.++|..|.+.++.++..-|...  ..+..++..|.  ..-++.+|.+.+++.+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445667788899999999999999998633333  45566666554  588899999999998765

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.11  E-value=6.4  Score=37.05  Aligned_cols=61  Identities=13%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      .+...+..|...|. +.+|+.+.++++.++|-+...+..+-.++..+|+.-.+++.|++.-+
T Consensus       281 llgkva~~yle~g~-~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGK-PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCC-hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            44556677788888 99999999999999999999999999999999998888888877543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=82.11  E-value=80  Score=34.20  Aligned_cols=42  Identities=19%  Similarity=0.187  Sum_probs=25.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          381 FERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       381 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +++.++..|....-|..+.......|..-.-...++++..-.
T Consensus       301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~  342 (881)
T KOG0128|consen  301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM  342 (881)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence            334444455545566677777777777766666666666543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.71  E-value=20  Score=37.27  Aligned_cols=93  Identities=22%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 013821          241 LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLW  312 (436)
Q Consensus       241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~  312 (436)
                      +..+.|+++.|.....+     .++..-|..||.+....++ +..|.++|.++..+.        -.+.+.+..+|....
T Consensus       646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~  719 (794)
T KOG0276|consen  646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK  719 (794)
T ss_pred             hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence            34456666666554433     3566678888888777764 888888888875543        234444444444333


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR  348 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~  348 (436)
                      +.|...-|-         .+|...|+++++.+.+..
T Consensus       720 ~~g~~N~AF---------~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  720 KQGKNNLAF---------LAYFLSGDYEECLELLIS  746 (794)
T ss_pred             hhcccchHH---------HHHHHcCCHHHHHHHHHh
Confidence            333322111         556667777776665544

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=81.51  E-value=46  Score=32.19  Aligned_cols=165  Identities=16%  Similarity=0.097  Sum_probs=99.5

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDE----Y--PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD-GESWM  270 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~----~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~  270 (436)
                      +...|+..++|.+|+......+..    +  +.-.+++..-..+|+...+..+|...+..|-..      .|.- +..-.
T Consensus       134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL  213 (411)
T KOG1463|consen  134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL  213 (411)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence            445788889999999888777653    2  223467777788889999999988888776543      2332 22223


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH--HHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAP---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA--EEY  345 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A--~~~  345 (436)
                      .-| ++....+||.-|..+|-+|++-..   ++..+...|-..+                   .+-...+..++-  +-.
T Consensus       214 qSG-Ilha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMl-------------------LcKIMln~~ddv~~lls  273 (411)
T KOG1463|consen  214 QSG-ILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYML-------------------LCKIMLNLPDDVAALLS  273 (411)
T ss_pred             hcc-ceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHH-------------------HHHHHhcCHHHHHHHHh
Confidence            334 333334689999999999987642   2344443332211                   222233444432  223


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p  389 (436)
                      -+.+++....+.+++..++.++..  +.+ |..|+..|..=+..+|
T Consensus       274 ~K~~l~y~g~~i~AmkavAeA~~nRSLkd-F~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  274 AKLALKYAGRDIDAMKAVAEAFGNRSLKD-FEKALADYKKELAEDP  318 (411)
T ss_pred             hHHHHhccCcchHHHHHHHHHhcCCcHHH-HHHHHHHhHHHHhcCh
Confidence            344555555667777777776643  334 7777777776666555

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=80.76  E-value=42  Score=37.75  Aligned_cols=46  Identities=24%  Similarity=0.112  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHH
Q 013821          302 NILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~  347 (436)
                      ..+..+|..+.....+++|.-+|+..-+.    .+|...|+|.+|+....
T Consensus       940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~  989 (1265)
T KOG1920|consen  940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAA  989 (1265)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHH
Confidence            34556777777777777776655533222    45555566665554443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.62  E-value=73  Score=32.76  Aligned_cols=192  Identities=15%  Similarity=0.078  Sum_probs=115.5

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA-KLV  276 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~  276 (436)
                      -....+.++...|+.+.|+.+++..+...-.  ....++.+|.++.-+.+|..|-..+......+.-..-.|..++ .|+
T Consensus       269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~  348 (546)
T KOG3783|consen  269 WLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCL  348 (546)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            3345566666678888899999988871111  2255778899999999999999999988877665544444444 333


Q ss_pred             HHH-------cCCHHHHHHHHHHH---HHhCCCC------------------------HHH--HHHHHHHHHHccCc--h
Q 013821          277 WEL-------HRDQHRALTYFERA---ALAAPQD------------------------SNI--LAAYACFLWEMEDD--G  318 (436)
Q Consensus       277 ~~~-------~~d~~~A~~~~~~a---l~~~p~~------------------------~~~--~~~la~~~~~~g~~--~  318 (436)
                      ...       +++-+.|-.+++..   +...|.+                        ..+  ++.++.++......  .
T Consensus       349 l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~  428 (546)
T KOG3783|consen  349 LQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKN  428 (546)
T ss_pred             hccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChh
Confidence            211       11223333333222   2221111                        111  12222222221111  1


Q ss_pred             HHH----------------HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHhcCCHH
Q 013821          319 EDD----------------KAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN---P----GDGEIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       319 ~A~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~d~~  375 (436)
                      +..                ..+...+...++...|+-..|..+|+.+++..   .    -.|.+++.+|.+++.+|.-..
T Consensus       429 ~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~  508 (546)
T KOG3783|consen  429 ELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLK  508 (546)
T ss_pred             hHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChH
Confidence            111                11112222288889999999999999998441   1    136799999999998877689


Q ss_pred             HHHHHHHHHHHhCCCC
Q 013821          376 KALCYFERAVQASPAD  391 (436)
Q Consensus       376 eA~~~~~~al~~~p~~  391 (436)
                      ++..++.+|-+...++
T Consensus       509 e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  509 EARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999999998876553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-12
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-12
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-06
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	6e-11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	7e-11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	6e-07
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-09
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	3e-10
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	9e-06
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	8e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	4e-04

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 30/192 (15%), Positives = 47/192 (24%), Gaps = 25/192 (13%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D        +  +   P   +     A      GD    E          PG  E+  + 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
            ++ W   R         ++A+ AAP+   I       L +                   
Sbjct: 64  GRVRWTQQRHAEA-AVLLQQASDAAPEHPGIALWLGHALEDA------------------ 104

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH--DKALCYFERAVQASPA 390
               G  E A   ++RA    P +  I +Q       L      D        AV     
Sbjct: 105 ----GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160

Query: 391 DSHVLAAYACFL 402
                A  +   
Sbjct: 161 AVEPFAFLSEDA 172

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 27/185 (14%), Positives = 43/185 (23%), Gaps = 24/185 (12%)

Query: 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305
            D  R       A    P D  +W+  A     +           +R     P     +A
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT-AGEMAVQRGLALHPGHPEAVA 61

Query: 306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365
                 W                             A     +A  A P    I      
Sbjct: 62  RLGRVRWTQ----------------------QRHAEAAVLLQQASDAAPEHPGIALWLGH 99

Query: 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425
            + +     + A   + RA Q  P + ++ A    +     +       S Q +      
Sbjct: 100 ALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158

Query: 426 QGAVT 430
            GAV 
Sbjct: 159 VGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 1/119 (0%)

Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
           PG  +A   +  +       AEA    ++  D  P HP +       L+  G    A   
Sbjct: 54  PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113

Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313
           Y  A    P +     Q       L  D         +   A  Q    +  +A    +
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVRAAVAQGVGAVEPFAFLSED 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
             AE +  ++  + P +  +L   + +  +   L R+  +   A   +P   E++     
Sbjct: 16  EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
           +  E  + Q  A+ ++  A    P   +     A  L      G+ + A + ++  L   
Sbjct: 76  VYKERGQLQ-EAIEHYRHALRLKPDFIDGYINLAAALVAA---GDMEGAVQAYVSALQYN 131

Query: 335 SK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379
                            G LE A+  + +AI   P      S    +      +   A+ 
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIH 190

Query: 380 YFERAVQASP--ADSH 393
           +FE+AV   P   D++
Sbjct: 191 HFEKAVTLDPNFLDAY 206

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 36/195 (18%), Positives = 83/195 (42%), Gaps = 22/195 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           EA+  Y + I+  P   +   N   +   +G+++ A  ++  A   DP   ++++    +
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI-- 333
           + E      RA+  + RA   +P  + +    AC  +E    G  D A + + + + +  
Sbjct: 213 LKEARIFD-RAVAAYLRALSLSPNHAVVHGNLACVYYEQ---GLIDLAIDTYRRAIELQP 268

Query: 334 -------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
                        + KG +  AE+ ++ A+   P   + ++  A +  E   + ++A+  
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRL 327

Query: 381 FERAVQASP--ADSH 393
           + +A++  P  A +H
Sbjct: 328 YRKALEVFPEFAAAH 342

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A  ++++ +   P       N   +L++     RA   Y  A    P         A +
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
            +E       A+  + RA    P   +     A  L E    G   +A++ +   L +  
Sbjct: 247 YYEQGLID-LAIDTYRRAIELQPHFPDAYCNLANALKEK---GSVAEAEDCYNTALRLCP 302

Query: 336 K---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
                           G++E A   + +A+   P      S  A  V +      +AL +
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQEALMH 361

Query: 381 FERAVQASP--ADSH 393
           ++ A++ SP  AD++
Sbjct: 362 YKEAIRISPTFADAY 376

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296
             A    + GD   AE +       +P +    +  + + ++  R   R+  +   A   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQ 62

Query: 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ---------------SKGDLEG 341
            P  +   +       E    G+  +A E +   L ++               + GD+EG
Sbjct: 63  NPLLAEAYSNLGNVYKER---GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

Query: 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
           A + +  A+  NP    + S    L+  L    ++A   + +A++  P  A + 
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKAL-GRLEEAKACYLKAIETQPNFAVAW 172

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           EAE+ Y   +   P H   L N A + +++G++  A   Y  A    P    +    A +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316
           + +  + Q  AL +++ A   +P  ++  +     L EM+D
Sbjct: 349 LQQQGKLQ-EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 21/195 (10%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
               +    ++++ P H   L  +   L +           +      P +  SW     
Sbjct: 39  KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98

Query: 275 LVWELHRDQHRALTYFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
               +      A  Y  +A  L    +     A+  +      + E D+A   +     +
Sbjct: 99  YYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 334 QSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
                              + + AE +FS+A+   P D  +M +   + ++   +   A 
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN-GEWKTAE 213

Query: 379 CYFERAVQASPADSH 393
            +F  A++   A  +
Sbjct: 214 KWFLDALEKIKAIGN 228

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 25/201 (12%), Positives = 54/201 (26%), Gaps = 31/201 (15%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            +E      +D    +  ++ + A+      D        +     DP        +   
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGED-----DKAQEEHIQV 330
           + EL++          +     P +     A  C+   +    E       KA      +
Sbjct: 66  LVELNKAN-ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA----TTL 120

Query: 331 LP------------IQSKGDLEGAEEYFSRAILANPGDGEIMS----QYAKLVWELHHDH 374
                            + + + A   +  A     G    M     +Y        ++ 
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT-----NNS 175

Query: 375 DKALCYFERAVQASPADSHVL 395
             A  +F +A+  +P D  V+
Sbjct: 176 KLAERFFSQALSIAPEDPFVM 196

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 21/180 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           +A   Y           L +           +   AE +++ A    P D     +   +
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ---VLP 332
            ++    +  A  +F  A        N              +   DK +        V  
Sbjct: 203 AFQNGEWK-TAEKWFLDALEKIKAIGN--------------EVTVDKWEPLLNNLGHVC- 246

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392
            +       A +Y  +A++  P +    S    +   +  + + A+ YF  A+     D+
Sbjct: 247 -RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-NFENAVDYFHTALGLRRDDT 304

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 30/173 (17%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ--YA 273
            AE ++ + +   P  P ++     +  + G+   AE ++  A       G       + 
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236

Query: 274 KLVWEL---HRDQHR---ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327
            L+  L    R   +   AL Y  +A +  PQ+++  +A       M             
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM------------- 283

Query: 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
                    G+ E A +YF  A+     D   ++     +     D +  +  
Sbjct: 284 ---------GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 27/193 (13%), Positives = 58/193 (30%), Gaps = 31/193 (16%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
            +  A  Y  +       +      Y      + +  +A   Y  A     G     +  
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
                  +  +  A  +F +A   AP+D  ++       ++                   
Sbjct: 166 GLEYGLTNNSKL-AERFFSQALSIAPEDPFVMHEVGVVAFQN------------------ 206

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQ--YAKL------VWELHHDHDKALCYFERA 384
               G+ + AE++F  A+      G  ++   +  L      V      + +AL Y  +A
Sbjct: 207 ----GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262

Query: 385 VQASPADSHVLAA 397
           +   P ++   +A
Sbjct: 263 LVLIPQNASTYSA 275

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 70.2 bits (171), Expect = 4e-13
 Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 24/199 (12%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
            EA   Y++ ++ +P       N A +LQ++G L  A  +Y  A    P   +++     
Sbjct: 26  EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
            + E+   Q  AL  + RA    P  ++  +  A                         +
Sbjct: 86  TLKEMQDVQG-ALQCYTRAIQINPAFADAHSNLASIH----------------------K 122

Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
             G++  A   +  A+   P   +     A  +  +  D        ++ V         
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWTDYDERMKKLVSIVADQLEK 181

Query: 395 LAAYACFLWETEEDEDDSK 413
               +     +        
Sbjct: 182 NRLPSVHPHHSMLYPLSHG 200

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 2/116 (1%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D   A + Y R I   P       N A + +  G++  A   Y  A    P   +++   
Sbjct: 92  DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWEMEDDGEDDKAQEE 326
           A  +  +           +  ++ A Q   + + + +              KA  E
Sbjct: 152 AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAE 207

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 32/188 (17%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           +A+   ++ ++  P         A + Q + +   A++ Y  A  +D  +      Y   
Sbjct: 55  QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAY----ACFLWEMEDDGEDDKAQEEHIQVL 331
           ++E  R +  A       A            +                            
Sbjct: 115 LYEQKRYE-EAYQRLLE-ASQDTLYPERSRVFENLGLVS--------------------- 151

Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-- 389
                     A+EYF +++  N     +  + A L+++   ++  A  Y++   Q     
Sbjct: 152 --LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-REYVPARQYYDLFAQGGGQN 208

Query: 390 ADSHVLAA 397
           A S +L  
Sbjct: 209 ARSLLLGI 216

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 25/146 (17%)

Query: 215 AEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
            EA +       +  YP    +  N   +  +     +A++Y+  +   +       ++ 
Sbjct: 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
           A L+++       A  Y++  A    Q+     A +  L                I++  
Sbjct: 182 ADLLYKEREYV-PARQYYDLFAQGGGQN-----ARSLLLG---------------IRLA- 219

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGE 358
            +   D + A  Y  +     PG  E
Sbjct: 220 -KVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
             A+A+EY+++ +      P +    A LL K+ +   A  YY+        +  S +  
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215

Query: 273 AKLVWELHRDQHRALTYFERA 293
            +L      D+  A +Y  + 
Sbjct: 216 IRLAKVF-EDRDTAASYGLQL 235

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 27/201 (13%)

Query: 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-------------HRD 282
            N  +   +     R    Y    +      + W + A+ + +                 
Sbjct: 20  SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79

Query: 283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK----- 336
              A   +ERA      ++  +  AYA +        +        + +  I        
Sbjct: 80  SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 139

Query: 337 --------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
                     ++     F +A         +    A + +    D   A   FE  ++  
Sbjct: 140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199

Query: 389 PADSHVLAAYACFLWETEEDE 409
                 + AY  +L    ED 
Sbjct: 200 GDIPEYVLAYIDYLSHLNEDN 220

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 17/164 (10%)

Query: 215 AEAEEYYKRMIDEYPCHPLLL-RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273
            +    Y R++      P L+   Y +  ++   +      +  A          ++  A
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175

Query: 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
            + +   +D+  A   FE            + AY  +L  + +D       E  +    +
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235

Query: 334 QSK----------------GDLEGAEEYFSRAILANPGDGEIMS 361
             +                GDL    +   R   A   + E   
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 279

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 29/195 (14%)

Query: 216 EAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-GESWMQYA 273
           EA   Y+R I      + LL   YA   + +    +    YN     +  D    ++QY 
Sbjct: 82  EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 141

Query: 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
           K               F++A   A    ++    A   +                     
Sbjct: 142 KFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEY--------------------- 179

Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
               D   A + F   +       E +  Y   +    ++ +     FER + +      
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPE 238

Query: 394 ----VLAAYACFLWE 404
               + A +  F   
Sbjct: 239 KSGEIWARFLAFESN 253

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 15/185 (8%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
           ++  E E+  +  +++ P    +LR+ A+  ++K +  +A +    A    P +     Q
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 272 ----YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327
               Y   V+++   +   +    +          I  A A      E +    +     
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKL------LELIGHAVAHLKKADEANDNLFRVCSIL 340

Query: 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGE---IMSQYAKLVWELHHDHDKALCYFERA 384
             +         E AE YF +             +  +Y           DKA+ +F   
Sbjct: 341 ASLH--ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

Query: 385 VQASP 389
           V+ + 
Sbjct: 399 VKINQ 403

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 34/209 (16%), Positives = 60/209 (28%), Gaps = 12/209 (5%)

Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGD 265
           N+  S  A +  ++ I   P +  L    A  L K      +    E     A    PG 
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325
            +     AK          +A+   ++A    P ++ +     C                
Sbjct: 247 TDVLRSAAKFYRRKDEPD-KAIELLKKALEYIPNNAYLHCQIGCCYRAK---VFQVMNLR 302

Query: 326 EHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385
           E+      +    +  A  +  +A  AN     + S  A L       +++A  YF++  
Sbjct: 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD-QYEEAEYYFQKEF 361

Query: 386 QASPADSHVLAA---YACFLWETEEDEDD 411
                          Y  F     + ED 
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDK 390

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 31/219 (14%)

Query: 216 EAEEYYKRM--IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM-----ADPGDGES 268
           +AEE  ++           +   NYA +    G L   + Y +         + P   ES
Sbjct: 76  KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135

Query: 269 WMQYAKLVWELHRDQH----RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
                +  W   +       RA   FE+A    P++    +  A   + +++      A 
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195

Query: 325 EEHIQVLPI-------------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365
           +   Q + +                   +   +    E+    A+   PG  +++   AK
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255

Query: 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404
                  + DKA+   ++A++  P ++++     C    
Sbjct: 256 FYRRK-DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 46/219 (21%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE---DYYNHATMADPGDGESWMQY 272
            A+  +++ +++ P +P      A    +  +   ++   D    A   +P +    +  
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215

Query: 273 AKLVWELHRDQHR---ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
           A  + ++  +           E A   AP  +++L + A F                   
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY------------------ 257

Query: 330 VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ----YAKLVWELHHDHD---------- 375
               + K + + A E   +A+   P +  +  Q    Y   V+++ +  +          
Sbjct: 258 ----RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 376 ----KALCYFERAVQASPADSHVLAAYACFLWETEEDED 410
                A+ + ++A +A+     V +  A      ++ E+
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.1 bits (135), Expect = 9e-09
 Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 27/199 (13%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-------------------LYRAEDYYN 256
           +A E  K+ ++  P +  L        + K                     +  A  +  
Sbjct: 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324

Query: 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316
            A  A+          A L     + +  A  YF++              +  +      
Sbjct: 325 KADEANDNLFRVCSILASLHALADQYE-EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383

Query: 317 DGED-DKAQEEHIQVLPIQSK-----GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370
             +  DKA    I+ + I  K        +  ++     +  N  D E +   A  + EL
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA-FLQEL 442

Query: 371 HHDHDKALCYFERAVQASP 389
           +    +A    ER +++  
Sbjct: 443 NEKMQQADEDSERGLESGS 461

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D  +A    +  +   P + L     A++ Q      +A++ +  A    P   E    Y
Sbjct: 23  DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA----CFLWEMEDDGEDDKAQEEHI 328
              +         ++ YF++ ALA P       A      C                   
Sbjct: 83  GWFLCGRLNRPAESMAYFDK-ALADPTYPTPYIANLNKGICS------------------ 123

Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
                  +G    AE Y  R++ A P       + A+           A  YF++     
Sbjct: 124 -----AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGDADYYFKKYQSRV 177

Query: 389 PADSH 393
                
Sbjct: 178 EVLQA 182

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 18/241 (7%)

Query: 185 YLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK 244
           YLA    + +  +  A  ++    P   D   A +   +          +     Q+   
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL-EASMCYLRGQVYTN 212

Query: 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304
             +  RA++ Y  A M D    E++ Q       L  D+   L      +  + +D+  L
Sbjct: 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSN-HLLTADEEWDLVLKLNYSTYSKEDAAFL 271

Query: 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---------------GDLEGAEEYFSRA 349
            +            ++ +  E+++  +    K                         ++ 
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409
           +  +P + ++   +   + E     +K        V   P  +    A   +     +  
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGE-KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390

Query: 410 D 410
           +
Sbjct: 391 E 391

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 22/200 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK- 274
           +      ++++  P +  +   +   L + G+  +     N      P    +W   A  
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW--LAVG 380

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
           + +        A  YF +++   PQ       +A         GE D+A   +     + 
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE---GEHDQAISAYTTAARLF 437

Query: 335 SK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379
                            G++  A EY   +      D  ++++   +V     D   A+ 
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG-VVAFNKSDMQTAIN 496

Query: 380 YFERAVQASPADSHVLAAYA 399
           +F+ A+            +A
Sbjct: 497 HFQNALLLVKKTQSNEKPWA 516

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 22/198 (11%), Positives = 49/198 (24%), Gaps = 20/198 (10%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D     E Y   I+       LL   A  L  +                DP + + +  +
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
              + E      +            P+ +    A   +   +    +  +A+    +   
Sbjct: 346 LASLHESGEKN-KLYLISNDLVDRHPEKAVTWLAVGIYYLCV---NKISEARRYFSKSST 401

Query: 333 IQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
           +  +               G+ + A   ++ A     G          +      +   A
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG-MQHMQLGNILLA 460

Query: 378 LCYFERAVQASPADSHVL 395
             Y + +      D  +L
Sbjct: 461 NEYLQSSYALFQYDPLLL 478

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 37/197 (18%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW----MQ 271
           EA  Y+ +     P        +A     +G+  +A   Y  A     G    +    MQ
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450

Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
           + +L      +   A  Y + +      D  +L       +                   
Sbjct: 451 HMQL-----GNILLANEYLQSSYALFQYDPLLLNELGVVAFNK----------------- 488

Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL------VWELHHDHDKALCYFERAV 385
                 D++ A  +F  A+L           +A         +     +D A+    + +
Sbjct: 489 -----SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543

Query: 386 QASPADSHVLAAYACFL 402
             S  D++V  A A   
Sbjct: 544 LLSTNDANVHTAIALVY 560

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 30/150 (20%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA-------TMADPGDGES 268
            A EY +     +   PLLL     +   K D+  A +++ +A          +     +
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328
           W        +L      A+    +  L +  D+N+  A A                    
Sbjct: 519 WANLGHAYRKLKMYD-AAIDALNQGLLLSTNDANVHTAIALVYLHK-------------- 563

Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGE 358
                        A  +   ++  +P +  
Sbjct: 564 --------KIPGLAITHLHESLAISPNEIM 585

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 9/181 (4%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
           A+A   +   +D  P + +     A +    G    A                + +Q   
Sbjct: 20  ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
           L+ +  +    A   F++   + P +     A +  +       + D+ Q    Q L   
Sbjct: 80  LLLKQGKLD-EAEDDFKKVLKSNPSEQEEKEAESQLV-------KADEMQRLRSQALDAF 131

Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
              D   A  +  + +     D E+    A+   +   +  KA+   + A +    ++  
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKSDNTEA 190

Query: 395 L 395
            
Sbjct: 191 F 191

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 24/188 (12%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A  +  ++++       L    A+   K+G+  +A      A+     + E++ + + L
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
            ++L   +  +L+                  +A +    + +   + A+E          
Sbjct: 198 YYQLGDHE-LSLSEVRECLKLDQDHKR---CFAHYKQVKKLNKLIESAEEL-------IR 246

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQ--------YAKLVWELHHDHDKALCYFERAVQA 387
            G    A   +   +   P   E   +        ++K          +A+      +Q 
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD-----EKPVEAIRICSEVLQM 301

Query: 388 SPADSHVL 395
            P + + L
Sbjct: 302 EPDNVNAL 309

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 37/176 (21%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           +A    K        +       + L  + GD   +          D      +  Y K 
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY-KQ 230

Query: 276 VWELHRDQHRALTYFE----RAALAA--------PQDSNILA-AY----ACFLWEMEDDG 318
           V +L++    A           A +         P  +     +      CF      D 
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS----KDE 286

Query: 319 EDDKAQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEI 359
           +  +A     +VL ++                    + A + +  A   N  D +I
Sbjct: 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 11/177 (6%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           EA   ++ +    P      R+      +      A    NHA M DP D       A  
Sbjct: 39  EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
               H     AL       L+ PQ   + +       +++D     +            +
Sbjct: 99  HTNEHNAN-AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED-------FFFAA 150

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASPAD 391
             +          A+  NP D ++    +  +++ L +++D A     RAV+  P D
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/223 (11%), Positives = 52/223 (23%), Gaps = 37/223 (16%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A           P    +    A     + +   A        ++ P   +      + 
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132

Query: 276 VWELHRDQH--------------RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321
             ++                      T    A    P D+ + A+              D
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS---NNYD 189

Query: 322 KAQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKL 366
            A     + + ++                    + A + ++RA+  NPG   +M   A  
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249

Query: 367 VWELHHDHDKALCYFERAVQASP----ADSHVLAAYACFLWET 405
              +   +D A     RA+                    +W+ 
Sbjct: 250 YSNM-SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           +A   +   +D  P + +     A +    G    A                + +Q   L
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
           + +  +    A   F++   + P ++    A +  +       + D+ Q    Q L    
Sbjct: 104 LLKQGKLD-EAEDDFKKVLKSNPSENEEKEAQSQLI-------KSDEMQRLRSQALNAFG 155

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395
            GD   A  +  + +     D E+    A+   +   +  KA+   + A +    ++   
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKNDNTEAF 214

Query: 396 AAYACFLWETEEDED 410
              +   ++  + E 
Sbjct: 215 YKISTLYYQLGDHEL 229

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 25/203 (12%), Positives = 59/203 (29%), Gaps = 24/203 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A  +  ++++       L    A+   K+G+  +A      A+     + E++ + + L
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
            ++L  D   +L+                A Y       +     ++             
Sbjct: 221 YYQL-GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR---------- 269

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQ--------YAKLVWELHHDHDKALCYFERAVQA 387
            G    A   +   +   P   E   +        ++K          +A+      +Q 
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD-----EKPVEAIRVCSEVLQM 324

Query: 388 SPADSHVLAAYACFLWETEEDED 410
            P + + L   A      E  ++
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDE 347

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 37/200 (18%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
            S  A     ++I               LL K+G L  AED +     ++P + E     
Sbjct: 75  KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

Query: 273 AKLVWELHRDQH--------------RALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318
           ++L+      +                A+ + ++       D+ +    A    +     
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE---- 190

Query: 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
                             G+   A      A      + E   + + L ++L  DH+ +L
Sbjct: 191 ------------------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL-GDHELSL 231

Query: 379 CYFERAVQASPADSHVLAAY 398
                 ++         A Y
Sbjct: 232 SEVRECLKLDQDHKRCFAHY 251

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 30/211 (14%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           +A    K        +       + L  + GD   +          D      +  Y K 
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY-KQ 253

Query: 276 VWELHRDQHRALTYFE----RAALAA--------PQDSNILAAYACFL-WEMEDDGEDDK 322
           V +L++    A           A +         P  +         +      D +  +
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 323 AQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367
           A     +VL ++                    + A + +  A   N  D +I     K  
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373

Query: 368 WELHHDHDKALCYFERAVQASPADSHVLAAY 398
             L     K   Y    V+ +     ++ AY
Sbjct: 374 RLL-KQSQKRDYYKILGVKRNAKKQEIIKAY 403

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 27/173 (15%)

Query: 216 EAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
           +A   Y+ ++   P                  K      A    +     +P +  +   
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334

Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
            A+           A+  +E A      D  I                  KAQ       
Sbjct: 335 RAEAYLIE-EMYDEAIQDYETAQEHNENDQQIREGLE-------------KAQRL----- 375

Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384
                   +  + Y    +  N    EI+  Y KL  + H D+ +     ++A
Sbjct: 376 ----LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 20/179 (11%), Positives = 49/179 (27%), Gaps = 24/179 (13%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D  E   Y+  +         L    A   +K  +  +A  +Y       P + +     
Sbjct: 36  DRTEMY-YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
           A++     +++  AL  +E+       +         + +      E +K          
Sbjct: 95  AEMQVCRGQEK-DALRMYEKILQLEADNLAANIFLGNYYYLT---AEQEKK--------- 141

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
                      E   + + +         +   L       ++KA    ++ +   P+ 
Sbjct: 142 ---------KLETDYKKLSSPTKMQYARYRDG-LSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 16/191 (8%), Positives = 38/191 (19%), Gaps = 37/191 (19%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR--------- 285
           +        + G   +A  Y+      +    E +             +           
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 286 ------ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339
                 A  +++     AP + + L A A                            G  
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR----------------------GQE 104

Query: 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399
           + A   + + +     +           +       K L    + + +     +      
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164

Query: 400 CFLWETEEDED 410
                T   E 
Sbjct: 165 LSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 19/151 (12%), Positives = 51/151 (33%), Gaps = 8/151 (5%)

Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
           +  +Q      E  ++  +A++YF +        + +      + W   D   +  ++  
Sbjct: 5   DEMLQKVSAAIEAGQNG-QAVSYFRQTIALNIDRTEM------YYWTNVDKNSEISSKLA 57

Query: 327 HIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
               L  +   + + A  ++   +   P + + +   A++          AL  +E+ +Q
Sbjct: 58  TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG-QEKDALRMYEKILQ 116

Query: 387 ASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417
               +         + + T E E     +D 
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDY 147

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 63.0 bits (152), Expect = 6e-11
 Identities = 25/201 (12%), Positives = 52/201 (25%), Gaps = 27/201 (13%)

Query: 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD------------- 282
            N  +   +     R    Y    +      + W + A+ + +  +              
Sbjct: 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301

Query: 283 QHRALTYFERAALAAPQDS-NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS------ 335
              A   +ERA     + +  +  AYA +        +        + +  I        
Sbjct: 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 361

Query: 336 -------KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
                     ++     F +A         +    A + +    D   A   FE  ++  
Sbjct: 362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421

Query: 389 PADSHVLAAYACFLWETEEDE 409
                 + AY  +L    ED 
Sbjct: 422 GDIPEYVLAYIDYLSHLNEDN 442

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 63.0 bits (152), Expect = 7e-11
 Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 26/180 (14%)

Query: 216 EAEEYYKRMID-EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
           +    Y R++  E     L+   Y +  ++   +      +  A          ++  A 
Sbjct: 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
           + +   +D+  A   FE            + AY  +L  +                    
Sbjct: 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-------------------- 438

Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAK--LVWELHH-DHDKALCYFERAVQASPAD 391
              +       F R + +     E   +     L +E +  D    L   +R   A   +
Sbjct: 439 --NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 6/126 (4%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWM 270
           +        +K+  ++      +    A +      D   A   +           E  +
Sbjct: 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429

Query: 271 QYAKLVWELHRDQHRALTYFERA----ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
            Y   +     + +     FER     +L   +   I A +  F   + D     K ++ 
Sbjct: 430 AYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488

Query: 327 HIQVLP 332
                 
Sbjct: 489 RFTAFR 494

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 19/167 (11%)

Query: 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280
            ++ ++E P          +  Q    + +A   Y       P  G  W  Y +      
Sbjct: 2   AEKKLEENPYDLDAWSILIREAQN-QPIDKARKTYERLVAQFPSSGRFWKLYIEA-EIKA 59

Query: 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340
           ++  +    F+R  L      ++   Y  ++ E +      K +              + 
Sbjct: 60  KNYDKVEKLFQR-CLMKVLHIDLWKCYLSYVRETKGKLPSYKEK--------------MA 104

Query: 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387
            A ++    I       +I   Y    +    +   +    +R    
Sbjct: 105 QAYDFALDKIGMEIMSYQIWVDYIN--FLKGVEAVGSYAENQRITAV 149

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 9/177 (5%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A   ++  + + P H    +       +      A           P +  + M  A  
Sbjct: 82  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
                  + +A           P        YA  +   E+             +  + S
Sbjct: 142 FTNESLQR-QACEILRDWLRYTPA-------YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASPAD 391
                  +E F  A+  +P   +   Q    +++ L  ++DKA+  F  A+   P D
Sbjct: 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 23/208 (11%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           DS E   Y+ + +     +  +  +  Q+     +  +A   ++ A   DP +   ++Q 
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED--------------DG 318
           A L +  ++      T F  A    P+   +   +A  L +  D              + 
Sbjct: 345 ACLAYRENKFD-DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 319 EDDKA-------QEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371
           + D           +   +    +  +   A     +A   +P   +     A++  +  
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ- 462

Query: 372 HDHDKALCYFERAVQASPADSHVLAAYA 399
            D D+A+  FE +   +      L A  
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 21/192 (10%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           E  +             + L +       K D   A +    A    P    S++  A +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALI 279

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
           + + +        YF++A      +S++        + +      D+A ++  +   +  
Sbjct: 280 MADRNDST-EYYNYFDKALKLDSNNSSVYYHRGQMNFIL---QNYDQAGKDFDKAKELDP 335

Query: 336 K---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
           +                  +  E  FS A    P   E+ + +A+++ +  +D DKAL  
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQ 394

Query: 381 FERAVQASPADS 392
           ++ A++      
Sbjct: 395 YDLAIELENKLD 406

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 61.2 bits (147), Expect = 3e-10
 Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 3/191 (1%)

Query: 221 YKRMIDEYPCHPLLLRNYAQ-LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279
           Y +        P +  N A    +K  D      Y        P         ++  +EL
Sbjct: 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQ-YEL 390

Query: 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339
           +       T           D   L           +  +        + +  ++    L
Sbjct: 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450

Query: 340 EGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
             + + F +          +I  + A + + +  D   A    E  ++    D   +  Y
Sbjct: 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510

Query: 399 ACFLWETEEDE 409
             FL    E+ 
Sbjct: 511 LDFLIYVNEES 521

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 17/175 (9%)

Query: 202 EVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260
             +D I  +     E +   +  I++       +   Y   +++   L  +   +     
Sbjct: 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462

Query: 261 ADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319
                  + +++ A + + + +D   A    E        D   +  Y  FL  + ++ +
Sbjct: 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522

Query: 320 DDKAQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEI 359
                E  I  +                    G L        R     P   ++
Sbjct: 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 17/201 (8%), Positives = 51/201 (25%), Gaps = 19/201 (9%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
            D ++       MI+E P    L     +         +  + ++      P     W  
Sbjct: 46  RDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCM 105

Query: 272 YAKLVWELHR--DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
              L ++     D         R       ++++    +   +  + +      +E    
Sbjct: 106 RLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNI 165

Query: 330 VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV--------WELHHDHDKALCYF 381
           V        ++  +    +  +  P   +  ++Y   +        +E           +
Sbjct: 166 V--------IQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217

Query: 382 ERAVQASPADSHVL-AAYACF 401
           +  +         +   Y  +
Sbjct: 218 KTLLCQPMDCLESMWQRYTQW 238

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 15/163 (9%), Positives = 47/163 (28%), Gaps = 21/163 (12%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
            R+       + +             A+P + E W    +       D   +L  + +A 
Sbjct: 13  QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQAL 71

Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
               +++ + AA A  L+         + +                       +A+  + 
Sbjct: 72  QLRGENAELYAALATVLYYQASQHMTAQTR-------------------AMIDKALALDS 112

Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397
            +   +   A     +  ++ +A+  +++ +  +    +    
Sbjct: 113 NEITALMLLA-SDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 6/121 (4%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLY---RAEDYYNHATMADPGDGES 268
           +D + +   Y++ +     +  L    A +L  +   +   +     + A   D  +  +
Sbjct: 58  NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA--CFLWEMEDDGEDDKAQEE 326
            M  A   +       +A+  +++         N             ++   + +     
Sbjct: 118 LMLLASDAFMQANYA-QAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHHH 176

Query: 327 H 327
           H
Sbjct: 177 H 177

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
            S+ + E   +     I ANP + E  +   +     + D+  +L  + +A+Q    ++ 
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN-DYSNSLLAYRQALQLRGENAE 79

Query: 394 VLAAYACFLWETEEDEDDSKSSDQFQQV 421
           + AA A  L+        +++     + 
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKA 107

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 14/177 (7%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
               + +  I + P      +       +  +   A           P + ++ M  A  
Sbjct: 83  VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
                  Q  A    +      P+   ++              +                
Sbjct: 143 YTNTSHQQ-DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS------------PVD 189

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASPAD 391
              LEG +E +  A   N    +   Q    +++ L  + ++A+  F  A+   P D
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 17/158 (10%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A E +  +++  P +     N    L   G    A+D        DP D    +     
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-- 152

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI-- 333
           + E   D+ +A    ++    + ++         +L  + +    ++ + +      +  
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 212

Query: 334 -------------QSKGDLEGAEEYFSRAILANPGDGE 358
                         S GDL+ A   F  A+  N  +  
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 22/191 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A+E +++     P +       A LL K+G    +E ++N   +  P   E    +A  
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA-- 385

Query: 276 VWELHRDQHR---ALTYFERAALAAPQD----SNILAAYACFLWEMEDDGEDDKAQEEHI 328
             E+  D+     A+  ++ A             I              G+      +  
Sbjct: 386 --EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI----------GKATILARQSS 433

Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
           Q      +     A +  ++A   +P   +     A+L  ++    D+A+  FE +   +
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME-KIDEAIELFEDSAILA 492

Query: 389 PADSHVLAAYA 399
                 L A  
Sbjct: 493 RTMDEKLQATT 503

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 21/192 (10%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
                            L L         K +L  A+     +    P    S++  A  
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALT 285

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
           + +    Q     +F++A    P+            + +    +   A+E+  +   +  
Sbjct: 286 LADKENSQ-EFFKFFQKAVDLNPEYPPTYYHRGQMYFIL---QDYKNAKEDFQKAQSLNP 341

Query: 336 K---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
           +               G    +E +F+   L  P   E+ + +A+++ +   D D A+  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR-GDFDTAIKQ 400

Query: 381 FERAVQASPADS 392
           ++ A +      
Sbjct: 401 YDIAKRLEEVQE 412

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 26/220 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           EA +YY+  I+  P  P+   N +      GDL +  ++   A    P   ++ ++ A  
Sbjct: 43  EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ----------- 324
              L      A+      +L    D   +          +     ++             
Sbjct: 103 NESLGNFT-DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161

Query: 325 -------------EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWEL 370
                        + H++V  + +  + + A    S A+       +     A  L+ + 
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221

Query: 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410
              +   L             +  L     F +      D
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 26/206 (12%), Positives = 57/206 (27%), Gaps = 30/206 (14%)

Query: 216 EAEEYYKRMI----DEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
             E    ++      +   + + L+N         +   A  YY +A   DP +   +  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
            +         + + + +  +A    P  S  L   A     +                 
Sbjct: 65  ISACYISTGDLE-KVIEFTTKALEIKPDHSKALLRRASANESL----------------- 106

Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW---ELHHDHDKALCYFERAVQAS 388
                G+   A    S   L    DG  +    +       +   ++       R  Q  
Sbjct: 107 -----GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161

Query: 389 PADSHVLAAYACFLWETEEDEDDSKS 414
           P+++ + + +  F    E    ++ S
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSS 187

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
              E  + M+ +   + LL     +   +      A  +   A   DP    +W    K 
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAY 307
           +         A   +E    AA    +     
Sbjct: 63  LQGQGDRA-GARQAWESGLAAAQSRGDQQVVK 93

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 23/164 (14%), Positives = 37/164 (22%), Gaps = 23/164 (14%)

Query: 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ-HR 285
                   +    Q+L K   L  A          D     + +  A +      ++   
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
           A   F+  A        +L   A                            G  E AE  
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQ----------------------GRWEAAEGV 222

Query: 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
              A+  + G  E +     L   L    +    Y  +   A  
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 18/89 (20%), Positives = 28/89 (31%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
           +   +A   ++ M D+     LLL   A     +G    AE     A   D G  E+ + 
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239

Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQD 300
              L   L +       Y  +   A    
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 21/177 (11%), Positives = 53/177 (29%), Gaps = 27/177 (15%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DPGDGESWMQY 272
           EA E + ++  +    P +    A    +      A+                   +  Y
Sbjct: 21  EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
            K++ +  +D   A+  ++ A        ++      +                      
Sbjct: 81  GKILMKKGQDS-LAIQQYQAAVDRDTTRLDMYGQIGSYF--------------------- 118

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
             +KG+   A +Y  + I     D ++  +  +  +    ++ KA   F + ++  P
Sbjct: 119 -YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKP 173

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 30/208 (14%), Positives = 56/208 (26%), Gaps = 29/208 (13%)

Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
            +D + +  E Y   ++           Y ++L KKG    A   Y  A   D    + +
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
            Q     +        A+ Y E+       D  +        +      E  KA    ++
Sbjct: 112 GQIGSYFYNKGNFP-LAIQYMEKQIRPTTTDPKVFYELGQAYYYN---KEYVKADSSFVK 167

Query: 330 VLPI------------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW--- 368
           VL +                          A+ Y+ + I      G              
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227

Query: 369 ----ELHHDHDKALCYFERAVQASPADS 392
                ++ D  KA   ++  +   P + 
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 16/161 (9%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A +Y ++ I      P +     Q      +  +A+  +       P     ++  A+ 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185

Query: 276 VWEL--HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
                    Q  A  Y+E+                                         
Sbjct: 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN--------------EYIAYYY 231

Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
               D   A+  +   +  +P + + +      +   HH H
Sbjct: 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 21/196 (10%), Positives = 46/196 (23%), Gaps = 14/196 (7%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
                     +     P   + + ++    Q    + R       A    P    +   +
Sbjct: 87  TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
                 L   Q   L    +A    P+    +A+       +E          +   + P
Sbjct: 147 DGGKQALETVQ-ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 333 ------------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
                        Q+   ++       +A    P     ++        L     + L  
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-ETVQRLLPV 264

Query: 381 FERAVQASPADSHVLA 396
             +A   +P     +A
Sbjct: 265 LCQAHGLTPQQVVAIA 280

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 22/194 (11%), Positives = 46/194 (23%), Gaps = 20/194 (10%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
                     +     P   + + + +   Q    + R       A    P    +    
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
                 L   Q R L    +A    PQ    +A++      +E      +      Q   
Sbjct: 317 GGGKQALETVQ-RLLPVLCQAHGLTPQQVVAIASHDGGKQALET---VQRLLPVLCQAHG 372

Query: 333 I---------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
           +               Q+   ++       +A    P     ++ +      L     + 
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-ETVQRL 431

Query: 378 LCYFERAVQASPAD 391
           L    +A   +P  
Sbjct: 432 LPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 23/193 (11%), Positives = 48/193 (24%), Gaps = 15/193 (7%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
                  +     P   + + +     Q    + R       A    P    +   +   
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP--- 332
              L   Q R L    +A    P+    +A+       +E          +   + P   
Sbjct: 354 KQALETVQ-RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412

Query: 333 ---------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383
                     Q+   ++       +A    P     ++        L       L   + 
Sbjct: 413 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL-ESIVAQLSRPDP 471

Query: 384 AVQASPADSHVLA 396
           A+ A   + H++A
Sbjct: 472 ALAALT-NDHLVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 24/177 (13%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
           A         ++  P   + + ++    Q    + R       A    P    +   +  
Sbjct: 55  AWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
               L   Q R L    +A    P+    +A++                          Q
Sbjct: 115 GKQALETVQ-RLLPVLCQAHGLTPEQVVAIASHDGGK----------------------Q 151

Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
           +   ++       +A    P     ++        L     + L    +A   +P  
Sbjct: 152 ALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL-ETVQRLLPVLCQAHGLTPQQ 207

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQL---LQKKGDLYRAEDYYNHATMADPGDGESW 269
             A+A  YY++ I        L   Y  L    +  G+  +AE    +     P      
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNI------LAAYACFL---WE 313
           + YA +V        + +    +       D  I      +  YA  L   W+
Sbjct: 65  VFYA-MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLDETWK 116

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
           ++ G+   AE   +  +   P    +   YA +V      +++ +    + +  +  D  
Sbjct: 38  RTLGEYRKAEAVLANGVKQFPNHQALRVFYA-MVLYNLGRYEQGVELLLKIIAETSDDET 96

Query: 394 V------LAAYACFL---WET 405
           +      +  YA  L   W+ 
Sbjct: 97  IQSYKQAILFYADKLDETWKA 117

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 35/208 (16%)

Query: 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267
            P++    EAE    + +   P          ++  KKGD+  A   ++ A      +  
Sbjct: 115 TPDYSP--EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKV 171

Query: 268 SWMQYAKLVWELHRDQH--------RALTYFERAALAAPQDSNI-----LAAYACFLWEM 314
           S    + ++ +L  D           ++   + A      D         A  + +    
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231

Query: 315 EDDGEDDKAQEEHIQVLPIQSK------------------GDLEGAEEYFSRAILANPGD 356
           ++     +A   + Q   +  K                       A E FS+A   +P  
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291

Query: 357 GEIMSQYAKLVWELHHDHDKALCYFERA 384
            E   +  +L+  L       L    + 
Sbjct: 292 PEPQQREQQLLEFL-SRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 21/233 (9%), Positives = 53/233 (22%), Gaps = 38/233 (16%)

Query: 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256
             D  E    ++       +    ++     +  H +      +    + ++ +      
Sbjct: 36  MADEEEEAKHVLQKLQGLVDRLYCFRDSY--FETHSVE-DAGRKQQDVQEEMEKTLQQME 92

Query: 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316
               +   + ++ M   K +         A     +A    P+            W+   
Sbjct: 93  EVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-- 150

Query: 317 DGEDDKAQEEHIQVLPI-----------------------QSKGDLEGAEEYFSRAILAN 353
            G+   A       L                         +    +  +      A+  +
Sbjct: 151 -GDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209

Query: 354 PGDGEI--------MSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
             DG          +S Y            +AL  + +A +     S     +
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNP-KISQQALSAYAQAEKVDRKASSNPDLH 261

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
            +A++ ++ +                  Q  G   +A   Y++  + D  +       A+
Sbjct: 35  DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308
              +L      A + F  A   A       A  A
Sbjct: 95  CHLQLGDLD-GAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 26/159 (16%)

Query: 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280
              +          L        + G    A+  +    M D  D   ++       +  
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG-ACRQSL 65

Query: 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340
               +AL  +   AL    +       A    ++                      GDL+
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQL----------------------GDLD 103

Query: 341 GAEEYFSRAIL---ANPGDGEIMSQYAKLVWELHHDHDK 376
           GAE  F  A     A P    + ++   ++  +    D+
Sbjct: 104 GAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 24/138 (17%)

Query: 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321
                E         ++       A   F+   +    D+                    
Sbjct: 14  SEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACR---------- 62

Query: 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381
                       QS G  E A + +S   L +  +       A+   +L  D D A   F
Sbjct: 63  ------------QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG-DLDGAESGF 109

Query: 382 ERAVQASPADSHVLAAYA 399
             A   + A     A  A
Sbjct: 110 YSARALAAAQPAHEALAA 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 32/203 (15%)

Query: 215 AEAEEYYKRMIDEYP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
             +  ++       P       +          + GD  +A + +  A   +  D   ++
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY---ACFLWEMEDDGEDDKAQEEH 327
            +A L+  ++  + RAL ++++A       +    AY                 +A++  
Sbjct: 62  NFANLLSSVNELE-RALAFYDKALELDSSAAT---AYYGAGNVYVVK---EMYKEAKDMF 114

Query: 328 IQVLPI---------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372
            + L                       + A  Y  RA+  N  D E   Q+   +     
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-G 173

Query: 373 DHDKALCYFERAVQASP--ADSH 393
             D+AL  F    +  P  AD+ 
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAF 196

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 26/192 (13%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
           +A E + + I+E     +   N+A LL    +L RA  +Y+ A   D     ++     +
Sbjct: 41  KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAY---ACFLWEMEDDGEDDKAQEEHIQVLP 332
                  +  A   FE+A  A  ++ +    +      L ++    +   A     + + 
Sbjct: 101 YVVKEMYK-EAKDMFEKALRAGMENGD---LFYMLGTVLVKL---EQPKLALPYLQRAVE 153

Query: 333 IQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
           +                  G L+ A   F+     +PG  +              + +KA
Sbjct: 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK-ENREKA 212

Query: 378 LCYFERAVQASP 389
           L   ++A+   P
Sbjct: 213 LEMLDKAIDIQP 224

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 9/94 (9%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
            +A   ++ +                  Q  G    A   Y++  + D  +       A+
Sbjct: 38  EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308
                  +   A +    A               
Sbjct: 98  -CLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 1/111 (0%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
                      + +        L + A    + G    A   +    + D  D   ++  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323
                +       A+  +   A+    +       A  L +  +  E +  
Sbjct: 62  G-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESG 111

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 15/154 (9%), Positives = 29/154 (18%), Gaps = 24/154 (15%)

Query: 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305
           G L                  E     A   ++       A   F+   +    DS    
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFL 59

Query: 306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365
                                       Q+ G  + A   +S   + +  +       A+
Sbjct: 60  GLGACR----------------------QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97

Query: 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399
                  +  +A      A +             
Sbjct: 98  -CLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 1/88 (1%)

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395
            G  E A   F    + +  D            +    +D A+  +         +    
Sbjct: 34  SGXYEDAHXVFQALCVLDHYDSRFFLGLG-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92

Query: 396 AAYACFLWETEEDEDDSKSSDQFQQVAP 423
              A  L +  E  +        Q++  
Sbjct: 93  FHAAECLLQXGELAEAESGLFLAQELIA 120

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
            EAE +++ +      +   +   A + Q K    +A D Y  A      D        +
Sbjct: 53  EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112

Query: 275 LVWELHRDQHRALTYFERAALAAPQDS 301
               L     +A   FE     +  + 
Sbjct: 113 CQLRLKAPL-KAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 23/146 (15%)

Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
             D+  +    K +          + +YA     KG +  AE ++    + D  + +  M
Sbjct: 15  VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74

Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
             A +     + Q  A   +  A      D   +         +                
Sbjct: 75  GLAAIYQIKEQFQQ-AADLYAVAFALGKNDYTPVFHTGQCQLRL---------------- 117

Query: 331 LPIQSKGDLEGAEEYFSRAILANPGD 356
                      A+E F   I  +  +
Sbjct: 118 ------KAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 20/166 (12%), Positives = 41/166 (24%), Gaps = 24/166 (14%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
           +     +     D   +               +    YA   +   R +  A  +F    
Sbjct: 5   ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE-EAEVFFRFLC 63

Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
           +    + + +   A                         Q K   + A + ++ A     
Sbjct: 64  IYDFYNVDYIMGLAAIY----------------------QIKEQFQQAADLYAVAFALGK 101

Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400
            D   +    +    L     KA   FE  +Q S  +   + A + 
Sbjct: 102 NDYTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEKLKIKAQSY 146

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 22/186 (11%), Positives = 52/186 (27%), Gaps = 22/186 (11%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQ-----KKGDLYRAEDYYNHATMADPGDGESWM 270
             +   + +    P    LL N+ Q            L RA +       + P    +  
Sbjct: 178 WPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARA 237

Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
                         +AL    R +     +  + A        +     ++ +    I+ 
Sbjct: 238 -------------EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284

Query: 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASP 389
           +    KG  + + +  +  I         ++      V+E+   + +A   +  A    P
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341

Query: 390 ADSHVL 395
             + + 
Sbjct: 342 GANTLY 347

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 208 MPNFDDSAEAEEYYKRM--IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265
             +    A        +  + E     ++ +  A     KG    +    N     +   
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-- 308

Query: 266 GESWMQYAKL--VWELHRDQHRALTYFERAALAAPQDSNIL 304
             SW+ Y  L  V+E+      A   +  A    P  + + 
Sbjct: 309 --SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 20/198 (10%), Positives = 47/198 (23%), Gaps = 19/198 (9%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
              +     +  ++D +     +   Y++ L   G   +A+           G   S   
Sbjct: 193 PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYY 252

Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
              LV +           +      + +           +  +                 
Sbjct: 253 G--LVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN---------------- 294

Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
            +  K  LE   + F        G   +    A + +            F   +   P  
Sbjct: 295 YVLKKRGLELFRKLFIELGNEGVGP-HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353

Query: 392 SHVLAAYACFLWETEEDE 409
           + +   +  FL    ++E
Sbjct: 354 TLLKEEFFLFLLRIGDEE 371

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 33/181 (18%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A       +++        +  ++   + G+ Y                  +  + A +
Sbjct: 56  TAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADI 114

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
           + +L   + + L   E  A   P                      +KA+E  ++     +
Sbjct: 115 LTKLRNAE-KELKKAEAEAYVNP----------------------EKAEEARLEGKEYFT 151

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQ----YAKLVWELHHDHDKALCYFERAVQASPAD 391
           K D   A + ++  I   P D    S      AKL         +A+    +A++  P  
Sbjct: 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-----MSFPEAIADCNKAIEKDPNF 206

Query: 392 S 392
            
Sbjct: 207 V 207

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 31/186 (16%)

Query: 216 EAEEYYK------RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA------TMADP 263
           +A  +++          +       L N       +     A  Y+  A      +   P
Sbjct: 202 DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261

Query: 264 GDGESWMQYAKLVWELHRDQHRALTYFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDK 322
              +++    + +        +A  Y  +  A +      I  +   FL  +   G D++
Sbjct: 262 SLPQAYFLITQ-IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320

Query: 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
           A +     L  +SK      E++     +A               +    +  KA  YF 
Sbjct: 321 AIQGFFDFL--ESKMLYADLEDFAI--DVAK-------------YYHERKNFQKASAYFL 363

Query: 383 RAVQAS 388
           +  Q  
Sbjct: 364 KVEQVR 369

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           + AEA   ++ +  + P      R+      +      A    NHA M DP D       
Sbjct: 32  NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNI 303
           A      H     AL       L+ PQ   +
Sbjct: 92  AVSHTNEHNAN-AALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 23/118 (19%)

Query: 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296
                + K  +L  A   +      +P   E+W        E  +D   A+     A + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG-LAIIALNHARML 80

Query: 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
            P+D  + AA A                          ++ +   A       +L+ P
Sbjct: 81  DPKDIAVHAALAVSH----------------------TNEHNANAALASLRAWLLSQP 116

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 23/174 (13%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A + +  +      H  +  N   +     ++  AE  +  +   D     ++ Q   +
Sbjct: 24  GALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG-M 79

Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
           ++        A+   + A +      N L  Y      +    +    +  +        
Sbjct: 80  LYYQTEKYDLAIKDLKEALIQ--LRGNQLIDYK----ILGLQFKLFACEVLYNIAFMYAK 133

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
           K + + AEE  + A            +++K+        DKA+    +     P
Sbjct: 134 KEEWKKAEEQLALATSMKSEP-----RHSKI--------DKAMECVWKQKLYEP 174

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 27/167 (16%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW------ 269
            A   ++R + E P  P  L   A+   K G +  A +         P     +      
Sbjct: 23  AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82

Query: 270 -MQYAKLVWELHRDQHR---ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325
            +   +   +  R +     AL+  + A    P+ + +          +   GE DKA+ 
Sbjct: 83  YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL---GERDKAEA 139

Query: 326 EHIQVLPI--------------QSKGDLEGAEEYFSRAILANPGDGE 358
              Q L +               S G L+ A   +++A+   P D +
Sbjct: 140 SLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286
           E P  P      AQ   K  +  RA   +      DP    ++    KL   L R    A
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD-DA 60

Query: 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
           +  + +    A ++          L E++D     +  E H  
Sbjct: 61  IDTYAQGIEVAREEGT---QKD--LSELQDAKLKAEGLEHHHH 98

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 26/221 (11%), Positives = 54/221 (24%), Gaps = 14/221 (6%)

Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
           A         ++  P   + + +     Q    + R       A    P    +   +  
Sbjct: 175 ASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 234

Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-- 332
               L   Q R L    +A    P     +A+       +E          +   + P  
Sbjct: 235 GKQALETMQ-RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

Query: 333 ----------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
                      Q+   ++       +A    P     ++ +      L     + L    
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-ETVQRLLPVLC 352

Query: 383 RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423
           +A   +P     +A+        E  +       Q   + P
Sbjct: 353 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 33/234 (14%), Positives = 62/234 (26%), Gaps = 75/234 (32%)

Query: 215 AEAEEYYKRMIDEY-----PCHPLLLR---NYAQLLQKKGDLYRAEDYY----------- 255
            +A       +          HP +     N A L  K+G    AE              
Sbjct: 86  KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145

Query: 256 --NHATMADPGDGESWMQYAKLVWELHRDQHR---ALTYFERAALAA------PQDSNIL 304
             +H  +A         Q   L   L ++Q +      Y++RA L        P D N+ 
Sbjct: 146 GKDHPDVAK--------QLNNLA-LLCQNQGKYEEVEYYYQRA-LEIYQTKLGPDDPNVA 195

Query: 305 AAY---ACFLWEMEDDGEDDKAQEEHIQVLPI------------------------QSKG 337
                 A    +    G+  +A+  + ++L                          + KG
Sbjct: 196 KTKNNLASCYLKQ---GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252

Query: 338 DLEGAEEYFSRAI---LANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
             +    +                + +    L  ++      + A    E A++
Sbjct: 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 23/191 (12%)

Query: 213 DSAEAEEYY------KRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA----TMAD 262
                   +          D      L L    + L   GD      ++  A    T   
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82

Query: 263 PGDGESWMQYAKLVWELHRDQHRALTYFERA---ALAAPQDSNILAAY---ACFLWEMED 316
                 + Q     +    D ++A+ Y +     A +         +       L  M  
Sbjct: 83  RTLSAIYSQLG-NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-- 139

Query: 317 DGEDDKAQEEHIQVLPIQSK-GDLEG-AEEYFSRAIL-ANPGDGEIMSQYAKLVWELHHD 373
            G  D+A     + L +  + GD        ++   +    G         K   ++   
Sbjct: 140 -GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198

Query: 374 HDKALCYFERA 384
             +A+ +++  
Sbjct: 199 LTRAVEFYQEN 209

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 33/236 (13%), Positives = 62/236 (26%), Gaps = 73/236 (30%)

Query: 216 EAEEYYK------RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY-----------NHA 258
           +A +Y+K      + +++         N    L+  G    A               +  
Sbjct: 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163

Query: 259 TMA-----------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------- 300
           +               G         K   ++     RA+ +++   L   +D       
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN-LKLMRDLGDRGAQ 222

Query: 301 ----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI---------------------QS 335
                N+   Y          G+   A E H + L I                       
Sbjct: 223 GRACGNLGNTY-------YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275

Query: 336 KGDLEGAEEYFSRA--ILANPGD-GEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
            G  E A E++ R   +    G+          L   + L H+ + A+ Y  R + 
Sbjct: 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 69/472 (14%), Positives = 133/472 (28%), Gaps = 151/472 (31%)

Query: 10  VNIGSLVSPSLSDSPNKDVEEDTNRLNSTTLSCSSPPTSQENCSSSLKGLRRASSDGNLK 69
           +N+ +  SP          E     L           TS+ + SS++K            
Sbjct: 187 LNLKNCNSP----------ETVLEMLQKLLYQIDPNWTSRSDHSSNIK------------ 224

Query: 70  GLAHSHSSCDIEDQIRYLCAQKK-SSCL---HNKANKTMLRSAPSFEIYSSVEGVESEEV 125
                     I+ ++R L   K   +CL    N  N     +   F +   +       +
Sbjct: 225 -----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKI-------L 269

Query: 126 SLTRTVTIGEDLDGSG---ISSGDFSFGSKKNMGLIEEEGE-----YEEEGLNGIGEEIE 177
             TR   + + L  +    IS    S      M L  +E +     Y +     +  E+ 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHS------MTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 178 RPVSPPMYLAMGLGISV------------PGFDDAGEVVDLIMPNFDDSAEAEEYYKRM- 224
              +P   L++ +  S+               D    +++  +   +  AE  + + R+ 
Sbjct: 324 T-TNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLS 379

Query: 225 -------------------IDEYPCHPLL--LRNYAQLLQKKGDLYRAEDYYNHATMADP 263
                              + +     ++  L  Y+ L++K+           +  +   
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVK 438

Query: 264 GDGESWMQYAKLVWELHR---DQHRALTYFERAALAAPQDSNILAAYACF-----LWEME 315
            + E           LHR   D +     F+   L  P        Y        L  +E
Sbjct: 439 LENEY---------ALHRSIVDHYNIPKTFDSDDLIPPYLDQ----YFYSHIGHHLKNIE 485

Query: 316 DDGEDDKAQEEHIQVLP--------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367
                     E + +          ++ K   +      S +IL      +    Y    
Sbjct: 486 --------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-- 535

Query: 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419
                D+D             P    ++ A   FL + EE+   SK +D  +
Sbjct: 536 -----DND-------------PKYERLVNAILDFLPKIEENLICSKYTDLLR 569

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 11/173 (6%)

Query: 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265
           +++    D ++  E+   ++++   +    ++   ++Q+         Y +     D  +
Sbjct: 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

Query: 266 GESWMQYAKLVWELHRDQ-----HRALTYFERAALAAPQDSNILAAYACFLWEMEDDG-- 318
              W Q   ++             R + Y        P +    +A+      ++D G  
Sbjct: 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE---SAWNYLKGILQDRGLS 290

Query: 319 EDDKAQEEHIQVLP-IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370
           +      + + + P   S   +    + +   +     + E +   A  + E+
Sbjct: 291 KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 34/235 (14%), Positives = 59/235 (25%), Gaps = 77/235 (32%)

Query: 215 AEAEEYYKRMIDEY-----PCHPLLLR---NYAQLLQKKGDLYRAEDYY----------- 255
            EA       +          HP +     N A L  K+G    AE              
Sbjct: 60  KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119

Query: 256 --NHATMADPGDGESWMQYAKLVWELHRDQHR---ALTYFERAALAA------PQDSNIL 304
              H  +A         Q   L   L ++Q +      Y+ RA L        P D N+ 
Sbjct: 120 GKFHPDVA--------KQLNNLA-LLCQNQGKAEEVEYYYRRA-LEIYATRLGPDDPNVA 169

Query: 305 AAY---ACFLWEMEDDGEDDKAQEEHIQVLPI------------------------QSKG 337
                 A    +    G+   A+  + ++L                          +SK 
Sbjct: 170 KTKNNLASCYLKQ---GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226

Query: 338 DLEGAEEYFSRAI------LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
               +  Y           + +P     +      ++      + A    + A +
Sbjct: 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLG-ALYRRQGKLEAAHTLEDCASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 25/239 (10%), Positives = 56/239 (23%), Gaps = 79/239 (33%)

Query: 213 DSAEAEEYYKRMIDEY-----PCHP---LLLRNYAQLLQKKGDLYRAEDYY--------- 255
               A    K+ +++        HP    +L   A + + +     A             
Sbjct: 16  PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75

Query: 256 ----NH----ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA------PQDS 301
               +H    AT+ +            +++        A    +R AL            
Sbjct: 76  TLGKDHPAVAATLNNLA----------VLYGKRGKYKEAEPLCKR-ALEIREKVLGKFHP 124

Query: 302 NILAAY---ACFLWEMEDDGEDDKAQEEHIQVLPI-----------------------QS 335
           ++       A         G+ ++ +  + + L I                         
Sbjct: 125 DVAKQLNNLALLCQNQ---GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181

Query: 336 KGDLEGAEEYFSRAILAN------PGDGEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
           +G  + AE  +   +           +G+    +       E       +  Y E    
Sbjct: 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/238 (13%), Positives = 55/238 (23%), Gaps = 62/238 (26%)

Query: 210 NFDDSAEAEEYYKRM------IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA----- 258
              D A+A EY+         I +         N    L+  G+   A            
Sbjct: 59  YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118

Query: 259 --------------------TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298
                                              +   E+      A+ ++E   L+  
Sbjct: 119 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN-LSLV 177

Query: 299 QDSNILAAYACFLWEM----EDDGEDDKAQEEHIQVLPI--------------------- 333
                 AA       +       G    A   H Q L I                     
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237

Query: 334 QSKGDLEGAEEYFSRAI---LANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
              G+ E A EY+ + +                  L   + L  D++KA+ Y  + + 
Sbjct: 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 28/183 (15%)

Query: 216 EAEEYYKR---MIDEYPCHPLL---LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
           +A  + +    +  +      +   L N A    + GD   A +++  A           
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 270 MQYAK----LVWELHRDQHRALTYFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
           +                  +A  + E        +          FL  +  +  D++  
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319

Query: 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384
            + +     + K      E        A              V+E     ++A  ++ + 
Sbjct: 320 HDLLSYF--EKKNLHAYIEACAR--SAAA-------------VFESSCHFEQAAAFYRKV 362

Query: 385 VQA 387
           ++A
Sbjct: 363 LKA 365

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 34/239 (14%), Positives = 55/239 (23%), Gaps = 74/239 (30%)

Query: 213 DSAEAEEYYK------RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA-------- 258
           D A+A EY+       R I +         N    L+  G+   A               
Sbjct: 58  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 259 -----------------TMADPGDGESWMQYAKLVWELHRDQHRALTYFERA-----ALA 296
                                           +   ++      A+  +E       AL 
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177

Query: 297 APQD-----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI------------------ 333
                     N+   +          G    A   H Q L I                  
Sbjct: 178 DRAAQGRAFGNLGNTH-------YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230

Query: 334 ---QSKGDLEGAEEYFSRA--ILANPGD-GEIMSQYAKL--VWELHHDHDKALCYFERA 384
                 G+ E A EY+ +   +     D          L   + L  D++KA+ Y  + 
Sbjct: 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 4/130 (3%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           + A+A    + + DE      +    A  L +      A++      +    +    +  
Sbjct: 21  EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
              + +   +    L   E+   A P +  +    A    ++   G D++A E    +L 
Sbjct: 81  KLELHQQAAE-SPELKRLEQELAANPDNFELACELAVQYNQV---GRDEEALELLWNILK 136

Query: 333 IQSKGDLEGA 342
           +         
Sbjct: 137 VNLGAQDGEV 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.89
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.89
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.88
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.88
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.87
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.86
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.75
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.71
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.7
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.65
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.61
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.61
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.59
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.52
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.52
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.52
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.52
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.44
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.42
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.36
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.35
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.18
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.17
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.14
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.02
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.94
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.91
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.8
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.61
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.58
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.53
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.53
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.48
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.48
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.34
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.27
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.27
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.11
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.05
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.94
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.81
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.61
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.12
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.07
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.95
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.78
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.56
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.54
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.44
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.14
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.99
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.82
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.73
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.58
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.32
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.92
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.65
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.63
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.49
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.37
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.22
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.57
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.51
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.44
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.99
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.63
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.42
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.22
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.55
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.4
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.11
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	86.54
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	85.63
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.97

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=5.5e-28  Score=238.02  Aligned_cols=250  Identities=15%  Similarity=0.216  Sum_probs=216.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++++...+..++.+.+ +....+..+|.++...|++++|+.+|+++++.+|++..+|..+|.++...|++++|+..|++
T Consensus       116 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  194 (388)
T 1w3b_A          116 DMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             CSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55566677777777777 67788888888888888888888888888888888888888888888888888889888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++++|.+..++..+|.++...+. +++|+..|++++.++|++..++..+|.++...|++++|+..+++++..       
T Consensus       195 al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  273 (388)
T 1w3b_A          195 AVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence            888888888888888888888764 888999999988888888888888898888899888888888877764       


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                           .++...|++++|+.+|+++++.+|.++.++..+|.++...|+ +++|+..|++++++.|++..++..+|.++.+.
T Consensus       274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence                 677888999999999999999999989999999999998888 99999999999999999888999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCChhHHh
Q 013821          406 EEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       406 g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      |++++|+..|++++++.|++..+..
T Consensus       353 g~~~~A~~~~~~a~~~~p~~~~a~~  377 (388)
T 1w3b_A          353 GKLQEALMHYKEAIRISPTFADAYS  377 (388)
T ss_dssp             TCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            9999999999999999888776554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=7.5e-28  Score=237.08  Aligned_cols=250  Identities=17%  Similarity=0.108  Sum_probs=226.9

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++++..++.+++.+++ +...+|.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus        82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44567777888888888 78888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++.+|.+..+|..+|.++...++ +++|+..|+++++++|++..++..+|.++...|++++|+..+.+.+..       
T Consensus       161 al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  239 (388)
T 1w3b_A          161 AIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV  239 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence            999999999999999999888874 999999999999999999999999999999999999999998877765       


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                           .++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|++++++.|.+..++..++.++...
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence                 778899999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCChhHHh
Q 013821          406 EEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       406 g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      |++++|+..|++++++.|+......
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~  343 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            9999999999999999988765443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=7.5e-28  Score=218.94  Aligned_cols=199  Identities=19%  Similarity=0.198  Sum_probs=178.8

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV  276 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  276 (436)
                      ++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY   83 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821          277 WEL-----------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY  345 (436)
Q Consensus       277 ~~~-----------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~  345 (436)
                      ...           ++ +++|+..|+++++++|++..++..+|                      .++...|++++|+..
T Consensus        84 ~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg----------------------~~~~~~g~~~~A~~~  140 (217)
T 2pl2_A           84 VALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRG----------------------LVYALLGERDKAEAS  140 (217)
T ss_dssp             HHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred             HHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHcCChHHHHHH
Confidence            999           85 99999999999999999999999999                      899999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      |+++++++ +++.++.++|.++..+|+ +++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++..
T Consensus       141 ~~~al~~~-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          141 LKQALALE-DTPEIRSALAELYLSMGR-LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHC-CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHhcc-cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999 999999999999999999 99999999999999999999999999999999999999999988753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=222.11  Aligned_cols=250  Identities=13%  Similarity=0.073  Sum_probs=234.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYN  256 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~  256 (436)
                      +...+..++..++..++ .....+..++.++...|++++|+.+++++++.+|+++.++..+|.++...| ++++|+.+|+
T Consensus        37 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  115 (330)
T 3hym_B           37 DFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS  115 (330)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            44577788888888888 677888889999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------  330 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------  330 (436)
                      ++++.+|.++.+|..+|.++...++ +++|+.+|+++++..|++..++..+|.++...|++++|...+.+++..      
T Consensus       116 ~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  194 (330)
T 3hym_B          116 KATTLEKTYGPAWIAYGHSFAVESE-HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF  194 (330)
T ss_dssp             HHHTTCTTCTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence            9999999999999999999999985 999999999999999999999999999999999999999999987765      


Q ss_pred             ------hHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          331 ------LPIQSKGDLEGAEEYFSRAILAN---------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL  395 (436)
Q Consensus       331 ------~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~  395 (436)
                            .++...|++++|+.+|+++++..         |....++..+|.++..+|+ +++|+.+|++++++.|++..++
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~  273 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-YAEALDYHRQALVLIPQNASTY  273 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCSHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCccchHHH
Confidence                  88899999999999999999986         6778899999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       396 ~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ..+|.++..+|++++|+.+|++++++.|+......
T Consensus       274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  308 (330)
T 3hym_B          274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT  308 (330)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence            99999999999999999999999999998876554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=9.5e-27  Score=227.08  Aligned_cols=227  Identities=10%  Similarity=-0.014  Sum_probs=204.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..|..+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.+..++..+|.++..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHccCchHHHHHHHHHHHH--------------hHHH
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAY----------ACFLWEMEDDGEDDKAQEEHIQV--------------LPIQ  334 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~~~--------------~~~~  334 (436)
                      .++ +++|+.+|++++++.|++..++..+          +.++...|++++|+..+.+.+..              .++.
T Consensus       146 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          146 TSH-QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             TTC-HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccc-HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            875 9999999999999998876666554          89999999999999999987765              7888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821          335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      ..|++++|+.+|+++++.+|+++.+|..+|.++...|+ +++|+.+|+++++++|++..++..+|.++..+|++++|+..
T Consensus       225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  303 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN  303 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCChh
Q 013821          415 SDQFQQVAPIRQG  427 (436)
Q Consensus       415 ~~~al~l~p~~~~  427 (436)
                      |++++++.|....
T Consensus       304 ~~~al~~~~~~~~  316 (365)
T 4eqf_A          304 FLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHHHCC--
T ss_pred             HHHHHHhCcccCC
Confidence            9999999887544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=9.9e-27  Score=229.51  Aligned_cols=236  Identities=12%  Similarity=0.087  Sum_probs=204.6

Q ss_pred             hcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q 013821          189 GLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-LYRAEDYYNHATMADPGDGE  267 (436)
Q Consensus       189 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~  267 (436)
                      ++.+.+ .+..+|..+|.++...|++++|+..|+++++++|++..+|..+|.++..+|+ +++|+.+|+++++++|++..
T Consensus        89 ai~~~p-~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~  167 (382)
T 2h6f_A           89 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ  167 (382)
T ss_dssp             EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhCCh-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence            455666 6778888888888888999999999999999999999999999999999996 99999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQS  335 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~  335 (436)
                      +|+++|.++..+++ +++|+.+|+++++++|++..+|+++|.++..+|++++|+..+++++..            .++..
T Consensus       168 a~~~~g~~~~~~g~-~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          168 VWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC-HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999988888875 899999999999999999999999998888888888888888888776            66666


Q ss_pred             -cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Q 013821          336 -KGDLEGA-----EEYFSRAILANPGDGEIMSQYAKLVWELH--HDHDKALCYFERAVQASPADSHVLAAYACFLWETE-  406 (436)
Q Consensus       336 -~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-  406 (436)
                       .|.+++|     +.+|+++++++|++..+|++++.++...|  + +++|+..++++ +.+|++..++..+|.+|.++| 
T Consensus       247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence             5555777     59999999999999999999999999887  5 89999999988 899999999999999999985 


Q ss_pred             -------C-hHHHHHHHHHH-HhhCCCChhH
Q 013821          407 -------E-DEDDSKSSDQF-QQVAPIRQGA  428 (436)
Q Consensus       407 -------~-~~eA~~~~~~a-l~l~p~~~~~  428 (436)
                             + +++|+++|+++ ++++|.....
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~  355 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKEKDTIRKEY  355 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence                   2 58999999999 8999876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.95  E-value=1.1e-25  Score=217.07  Aligned_cols=250  Identities=12%  Similarity=0.086  Sum_probs=229.9

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---CHPLLLRNY------------AQLL  242 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~l------------a~~~  242 (436)
                      +++.+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|   ++..++..+            |.++
T Consensus        52 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (359)
T 3ieg_A           52 KSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA  130 (359)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45577888888888888 7889999999999999999999999999999999   888888777            7899


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      ...|++++|+..++++++.+|.++.++..+|.++...++ +++|+..++++++..|.+..++..+|.++...|++++|..
T Consensus       131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999875 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCH
Q 013821          323 AQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDH  374 (436)
Q Consensus       323 ~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~  374 (436)
                      .+.+.+..                        .++...|++++|+..|+++++..|++..    ++..+|.++...|+ +
T Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~  288 (359)
T 3ieg_A          210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-P  288 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-H
Confidence            99877665                        3478899999999999999999999874    46679999999999 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       375 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+......
T Consensus       289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  344 (359)
T 3ieg_A          289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE  344 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence            99999999999999999999999999999999999999999999999999877544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=8.1e-26  Score=219.96  Aligned_cols=245  Identities=10%  Similarity=0.025  Sum_probs=221.6

Q ss_pred             CCCChHH-HHHhhcCCCCCC---chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013821          178 RPVSPPM-YLAMGLGISVPG---FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAED  253 (436)
Q Consensus       178 ~p~~a~~-~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  253 (436)
                      +++.+.. ++..++.+.+..   ....+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  119 (368)
T 1fch_A           40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS  119 (368)
T ss_dssp             ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            4456666 788888887732   246789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHccCc
Q 013821          254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA----------------AYACFLWEMEDD  317 (436)
Q Consensus       254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~g~~  317 (436)
                      +|+++++++|.++.++..+|.++...++ +++|+..|+++++..|.+...+.                .++.++ ..|++
T Consensus       120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  197 (368)
T 1fch_A          120 ALRRCLELKPDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF  197 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH
Confidence            9999999999999999999999999875 99999999999999999877665                456666 89999


Q ss_pred             hHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          318 GEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       318 ~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                      ++|+..+.+.+..              .++...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+..|++
T Consensus       198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~  276 (368)
T 1fch_A          198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRR  276 (368)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence            9999999877654              788899999999999999999999999999999999999999 9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      +++++|++..++..+|.++..+|++++|+..|++++.+.|..
T Consensus       277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999998876

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.6e-25  Score=211.36  Aligned_cols=234  Identities=13%  Similarity=0.055  Sum_probs=220.6

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      .+...+..+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   99 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY   99 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            34457888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHH
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAE  343 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~  343 (436)
                      +...++++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+.+.+..            .++...|++++|+
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE  179 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence            9999845999999999999999999999999999999999999999999988876            7888999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821          344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------PADSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      .+|+++++.+|.++.++..+|.++...|+ +++|+.++++++...         |....++..+|.++...|++++|+.+
T Consensus       180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  258 (330)
T 3hym_B          180 RFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY  258 (330)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999999999999999999999 999999999999986         66678999999999999999999999


Q ss_pred             HHHHHhhCCCChhHHh
Q 013821          415 SDQFQQVAPIRQGAVT  430 (436)
Q Consensus       415 ~~~al~l~p~~~~~~~  430 (436)
                      |++++++.|.......
T Consensus       259 ~~~a~~~~~~~~~~~~  274 (330)
T 3hym_B          259 HRQALVLIPQNASTYS  274 (330)
T ss_dssp             HHHHHHHSTTCSHHHH
T ss_pred             HHHHHhhCccchHHHH
Confidence            9999999998766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.94  E-value=3.8e-25  Score=229.59  Aligned_cols=253  Identities=13%  Similarity=0.067  Sum_probs=211.4

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      ++..++...+...+ ....+|..++.++...|++++|+.++++++...|++..++..+|.+|...|++++|+++|+++++
T Consensus       323 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  401 (597)
T 2xpi_A          323 DVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST  401 (597)
T ss_dssp             HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34444444444444 34455555566666666666666666666666777788888899999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------  330 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------  330 (436)
                      .+|.+..+|..++.++...++ +++|++.|+++++..|++..++..++.++...|++++|...+.+++..          
T Consensus       402 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  480 (597)
T 2xpi_A          402 MDPQFGPAWIGFAHSFAIEGE-HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE  480 (597)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            999999999999998888875 999999999999999999999999999999999999999999887765          


Q ss_pred             --hHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          331 --LPIQSKGDLEGAEEYFSRAILA------NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       331 --~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                        .++.+.|++++|+++|+++++.      +|++ ..+|..+|.++...|+ +++|+..|+++++.+|+++.++..++.+
T Consensus       481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~  559 (597)
T 2xpi_A          481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALV  559 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence              7888999999999999999998      5664 7899999999999999 9999999999999999999999999999


Q ss_pred             HHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013821          402 LWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA  436 (436)
Q Consensus       402 ~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~ya  436 (436)
                      |...|++++|+++|++++++.|+...+.. .+++|+
T Consensus       560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            99999999999999999999999887766 677663

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=5.4e-25  Score=212.21  Aligned_cols=250  Identities=13%  Similarity=0.062  Sum_probs=227.3

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++++|..++..++...+ ..+.+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus        18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   96 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK   96 (359)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45578888999998888 78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCC---CCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821          258 ATMADP---GDGESWMQY------------AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       258 al~~~p---~~~~~~~~l------------a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      +++.+|   .+..++..+            |.++...+ ++++|+.+|+++++..|.+..++..+|.++...|++++|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  175 (359)
T 3ieg_A           97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS  175 (359)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            999999   888888877            67777776 59999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHhcCCHHHHH
Q 013821          323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ------------YAKLVWELHHDHDKAL  378 (436)
Q Consensus       323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~d~~eA~  378 (436)
                      .+.+.+..            .++...|++++|+..|+++++..|++..++..            +|.++...|+ +++|+
T Consensus       176 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~  254 (359)
T 3ieg_A          176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDAT  254 (359)
T ss_dssp             HHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence            99977765            78889999999999999999999999887654            3788999999 99999


Q ss_pred             HHHHHHHHhCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          379 CYFERAVQASPADSH----VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       379 ~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ..++++++..|++..    ++..+|.++...|++++|+..|++++++.|.......
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (359)
T 3ieg_A          255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK  310 (359)
T ss_dssp             HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence            999999999999874    4667999999999999999999999999998766443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=1.2e-24  Score=217.63  Aligned_cols=245  Identities=12%  Similarity=0.075  Sum_probs=138.7

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      +|..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|+++++
T Consensus        44 ~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  122 (450)
T 2y4t_A           44 DALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK  122 (450)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444555544444 44555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hCCCC-------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          261 ADPGD-------------------------------------------------GESWMQYAKLVWELHRDQHRALTYFE  291 (436)
Q Consensus       261 ~~p~~-------------------------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~  291 (436)
                      .+|.+                                                 ..++..+|.++...++ +++|+.+|+
T Consensus       123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~  201 (450)
T 2y4t_A          123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLK  201 (450)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-GGGGHHHHH
T ss_pred             cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence            55554                                                 4444444444444432 444444444


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHH
Q 013821          292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~  347 (436)
                      ++++.+|.+..++..+|.++...|++++|+..+.+++..                        .++...|++++|+.+|+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  281 (450)
T 2y4t_A          202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE  281 (450)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            444444444444444444444444444444444433322                        23455566666666666


Q ss_pred             HHHHhCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          348 RAILANPGDG----EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       348 ~al~~~p~~~----~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      ++++..|.++    .++..+|.++...|+ +++|+..++++++++|+++.+|..+|.++...|++++|+..|++++++.|
T Consensus       282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          282 SVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            6666666653    356666666666666 77777777777777777777777777777777777777777777777766


Q ss_pred             CChhH
Q 013821          424 IRQGA  428 (436)
Q Consensus       424 ~~~~~  428 (436)
                      +....
T Consensus       361 ~~~~~  365 (450)
T 2y4t_A          361 NDQQI  365 (450)
T ss_dssp             SCHHH
T ss_pred             chHHH
Confidence            65544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=6.6e-25  Score=219.59  Aligned_cols=228  Identities=13%  Similarity=0.071  Sum_probs=208.1

Q ss_pred             cCCCChHHHHHhhcCCCCCCch---hhhhhH------------HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFD---DAGEVV------------DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQL  241 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~  241 (436)
                      .+++++..++..++.+.+ ...   ..|..+            |.++...|++++|+.+|+++++..|.+..++..+|.+
T Consensus       108 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  186 (450)
T 2y4t_A          108 GKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC  186 (450)
T ss_dssp             TCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            356677777888888888 565   565554            6679999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HH
Q 013821          242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY------------AC  309 (436)
Q Consensus       242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l------------a~  309 (436)
                      |...|++++|+..|+++++.+|.++.++..+|.++...++ +++|+..|++++..+|++...+..+            +.
T Consensus       187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (450)
T 2y4t_A          187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  265 (450)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875 9999999999999999999988776            99


Q ss_pred             HHHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 013821          310 FLWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD  373 (436)
Q Consensus       310 ~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d  373 (436)
                      ++...|++++|+..+.+++..                .++...|++++|+.+++++++.+|+++.+|..+|.++...|+ 
T Consensus       266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-  344 (450)
T 2y4t_A          266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM-  344 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC-
Confidence            999999999999999977665                678899999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          374 HDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                      +++|+.+|+++++++|++..++..++.+....++
T Consensus       345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999988766543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=2.8e-25  Score=216.14  Aligned_cols=240  Identities=11%  Similarity=0.036  Sum_probs=224.7

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++..+..++.+++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus        79 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD  157 (368)
T ss_dssp             CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55578889999999998 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchH
Q 013821          258 ATMADPGDGESWM----------------QYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGE  319 (436)
Q Consensus       258 al~~~p~~~~~~~----------------~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~  319 (436)
                      ++...|.+...+.                .++.++ ..+ ++++|+.+|+++++.+|.  +..++..+|.++...|++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~  235 (368)
T 1fch_A          158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS-LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK  235 (368)
T ss_dssp             HHHTSTTTGGGCC---------------CTTHHHH-HHH-HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc-cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence            9999999877665                466555 666 499999999999999999  89999999999999999999


Q ss_pred             HHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          320 DDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       320 A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      |+..+.+.+..            .++...|++++|+.+|+++++++|.+..++..+|.++..+|+ +++|+.+|++++.+
T Consensus       236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~  314 (368)
T 1fch_A          236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence            99999988876            788899999999999999999999999999999999999999 99999999999999


Q ss_pred             CCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          388 SPAD-----------SHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       388 ~p~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      .|++           ..+|..++.++..+|++++|..+++++++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            9988           899999999999999999999999887765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-24  Score=199.04  Aligned_cols=214  Identities=17%  Similarity=0.132  Sum_probs=195.0

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM  270 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  270 (436)
                      +..|..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++++.|.+       +.++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            4678889999999999999999999999999 889999999999999999999999999999998876       78999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCC
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGD  338 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~  338 (436)
                      .+|.++...++ +++|+.+|++++++.|.        +.++...|++++|...+.+.+..            .++...|+
T Consensus        84 ~l~~~~~~~~~-~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           84 RIGNAYHKLGD-LKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccc-HHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            99999998875 99999999999998887        34555666677777777655443            78889999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821          339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  418 (436)
                      +++|+.+|+++++.+|.++.++..+|.++...|+ +++|+.+|+++++.+|+++.++..+|.++..+|++++|+..|+++
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HhhC
Q 013821          419 QQVA  422 (436)
Q Consensus       419 l~l~  422 (436)
                      +++.
T Consensus       234 ~~~~  237 (258)
T 3uq3_A          234 RTKD  237 (258)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9998

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.94  E-value=1e-24  Score=199.27  Aligned_cols=208  Identities=19%  Similarity=0.190  Sum_probs=184.4

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV  103 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            46777888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      .++ +++|+.+|+++++..|.+..++..+|                      .++...|++++|+.+++++++..|.+..
T Consensus       104 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~  160 (243)
T 2q7f_A          104 KEM-YKEAKDMFEKALRAGMENGDLFYMLG----------------------TVLVKLEQPKLALPYLQRAVELNENDTE  160 (243)
T ss_dssp             TTC-HHHHHHHHHHHHHHTCCSHHHHHHHH----------------------HHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hcc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence            875 99999999999999999999999999                      8889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ++..+|.++...|+ +++|+..|+++++..|++..++..+|.++...|++++|+..|++++++.|+......
T Consensus       161 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  231 (243)
T 2q7f_A          161 ARFQFGMCLANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH  231 (243)
T ss_dssp             HHHHHHHHHHHHTC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence            99999999999999 999999999999999999999999999999999999999999999999999877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.94  E-value=1.2e-24  Score=207.46  Aligned_cols=224  Identities=17%  Similarity=0.109  Sum_probs=185.0

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            34667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCchHHHHHHHHHHHH------------h
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAY--------------AC-FLWEMEDDGEDDKAQEEHIQV------------L  331 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~~~~------------~  331 (436)
                      .++ +++|+..|+++++..|.+...+..+              +. ++...|++++|...+.+.+..            .
T Consensus       102 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          102 EHN-ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             TTC-HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            764 7777777777777777776666655              54 566667777777777766554            7


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD  411 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  411 (436)
                      ++...|++++|+.+++++++.+|++..++..+|.++...|+ +++|+..|+++++..|++..++..+|.++...|++++|
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR-PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            88899999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 013821          412 SKSSDQFQQVAPI  424 (436)
Q Consensus       412 ~~~~~~al~l~p~  424 (436)
                      +..|++++.+.|.
T Consensus       260 ~~~~~~a~~~~~~  272 (327)
T 3cv0_A          260 AKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCc
Confidence            9999999999888

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=1.1e-25  Score=219.49  Aligned_cols=241  Identities=13%  Similarity=0.040  Sum_probs=217.2

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.+..++.+++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|++
T Consensus        80 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  158 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN  158 (365)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            56688899999999999 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          258 ATMADPGDGESWMQY----------AKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       258 al~~~p~~~~~~~~l----------a~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      +++++|.+..++..+          |.++...++ +++|+.+|+++++.+|.  ++.++..+|.++...|++++|+..+.
T Consensus       159 al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  237 (365)
T 4eqf_A          159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN  237 (365)
T ss_dssp             HHHHCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999877666555          888888875 99999999999999999  99999999999999999999999999


Q ss_pred             HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Q 013821          326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---  390 (436)
Q Consensus       326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~---  390 (436)
                      +.+..            .++...|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+.+|++++++.|+   
T Consensus       238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA-YREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccCC
Confidence            88876            888999999999999999999999999999999999999999 99999999999999887   


Q ss_pred             ---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          391 ---------DSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       391 ---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                               +..+|..++.++..+|+.+.+....++.+..
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~  356 (365)
T 4eqf_A          317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV  356 (365)
T ss_dssp             ----------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred             CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence                     3578999999999999999998887765543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=3.1e-25  Score=211.59  Aligned_cols=243  Identities=11%  Similarity=0.014  Sum_probs=222.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++++..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus        36 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  114 (327)
T 3cv0_A           36 NLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA  114 (327)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45578888999988888 78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHH--------------HH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821          258 ATMADPGDGESWMQY--------------AK-LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK  322 (436)
Q Consensus       258 al~~~p~~~~~~~~l--------------a~-~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  322 (436)
                      +++.+|.+...+..+              +. ++...++ +++|+.+++++++..|.+..++..+|.++...|++++|..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  193 (327)
T 3cv0_A          115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA  193 (327)
T ss_dssp             HHHTSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            999999988887777              65 5666664 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      .+.+.+..            .++...|++++|+.+|+++++..|.+..++..+|.++..+|+ +++|+..|++++...|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCc
Confidence            99988776            788899999999999999999999999999999999999999 99999999999999999


Q ss_pred             ------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          391 ------------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       391 ------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                                  +..++..++.++..+|++++|...++++++..|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA  317 (327)
T ss_dssp             SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred             cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence                        789999999999999999999999998877644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=2.2e-24  Score=189.68  Aligned_cols=170  Identities=15%  Similarity=0.130  Sum_probs=104.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +..|.++|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  357 (436)
                      ..++ ++.|+..+.+++.++|.+..++..+|                      .++..+|++++|+.+|+++++++|.++
T Consensus        85 ~~~~-~~~a~~~~~~a~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~  141 (184)
T 3vtx_A           85 MIDE-KQAAIDALQRAIALNTVYADAYYKLG----------------------LVYDSMGEHDKAIEAYEKTISIKPGFI  141 (184)
T ss_dssp             HTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCC-HHHHHHHHHHHHHhCccchHHHHHHH----------------------HHHHHhCCchhHHHHHHHHHHhcchhh
Confidence            5543 66666666666666666666666666                      555556666666666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                      .+|+++|.++..+|+ +++|+.+|+++++++|++
T Consensus       142 ~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          142 RAYQSIGLAYEGKGL-RDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTHHH
T ss_pred             hHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCccC
Confidence            666666666666666 666666666666666553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=6e-24  Score=186.85  Aligned_cols=172  Identities=13%  Similarity=0.126  Sum_probs=166.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC  309 (436)
Q Consensus       230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~  309 (436)
                      +++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.++...++ +++|+..+++++...|++..++..+| 
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~-   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVLDTTSAEAYYILG-   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCchhHHHHHHHH-
Confidence            5678999999999999999999999999999999999999999999999985 99999999999999999999999999 


Q ss_pred             HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                                           .++...++++.|+..+.+++..+|.+..++..+|.++..+|+ +++|+..|+++++++|
T Consensus        81 ---------------------~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p  138 (184)
T 3vtx_A           81 ---------------------SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKP  138 (184)
T ss_dssp             ---------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred             ---------------------HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcc
Confidence                                 888899999999999999999999999999999999999999 9999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          390 ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       390 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      .++.++..+|.++..+|++++|+..|+++++++|+.
T Consensus       139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            999999999999999999999999999999998864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=2.4e-24  Score=195.71  Aligned_cols=177  Identities=16%  Similarity=0.063  Sum_probs=168.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|+++++++|++..++..+|
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999875 99999999999999999999999999


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSK-----------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA  377 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA  377 (436)
                                            .++...           |++++|+..|+++++++|+++.++.++|.++..+|+ +++|
T Consensus        81 ----------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A  137 (217)
T 2pl2_A           81 ----------------------EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKA  137 (217)
T ss_dssp             ----------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHH
T ss_pred             ----------------------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHH
Confidence                                  666666           999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          378 LCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       378 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +..|+++++++ +++.++..+|.++..+|++++|+..|++++++.|.+.....
T Consensus       138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~  189 (217)
T 2pl2_A          138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV  189 (217)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999 99999999999999999999999999999999999877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=1.2e-23  Score=193.90  Aligned_cols=208  Identities=16%  Similarity=0.164  Sum_probs=199.6

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +..|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          278 ELHRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      ..++ +++|+.+|+++++  ..|.+..++..+|                      .++...|++++|+.+|+++++..|.
T Consensus       117 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          117 EQKR-YEEAYQRLLEASQDTLYPERSRVFENLG----------------------LVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HTTC-HHHHHHHHHHHTTCTTCTTHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHhH-HHHHHHHHHHHHhCccCcccHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            9875 9999999999999  8888999999999                      8889999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013821          356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV  429 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  429 (436)
                      +..++..+|.++..+|+ +++|+.+++++++..|.+..++..++.++...|++++|..++++++++.|......
T Consensus       174 ~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          174 QPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred             cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999876654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.93  E-value=2e-23  Score=216.67  Aligned_cols=253  Identities=12%  Similarity=0.074  Sum_probs=232.9

Q ss_pred             CCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA  258 (436)
Q Consensus       179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a  258 (436)
                      .+++..++...+.. + .+...|..+|.++.+.|++++|+.+|+++++.+|++..++..++.++...|++++|+..++++
T Consensus       288 ~~~A~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          288 LRRAEDYLSSINGL-E-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             HHHHHHHHHTSTTG-G-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC-C-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34566777777666 3 567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------
Q 013821          259 TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------  330 (436)
Q Consensus       259 l~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------  330 (436)
                      ++..|.+..++..+|.+|...++ +++|+++|+++++.+|.+..+|..++.++...|++++|+..+++++..        
T Consensus       366 ~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  444 (597)
T 2xpi_A          366 VDRHPEKAVTWLAVGIYYLCVNK-ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY  444 (597)
T ss_dssp             HHHCTTSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred             HhhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence            99999999999999999999975 999999999999999999999999999999999999999999987765        


Q ss_pred             ----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHH
Q 013821          331 ----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA------SPAD-SHVLAAYA  399 (436)
Q Consensus       331 ----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~------~p~~-~~~~~~la  399 (436)
                          .++...|++++|+++|+++++..|.++.+|..+|.++...|+ +++|+.+|+++++.      +|++ ..+|..++
T Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  523 (597)
T 2xpi_A          445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLG  523 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence                778899999999999999999999999999999999999999 99999999999998      6664 78999999


Q ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013821          400 CFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY  435 (436)
Q Consensus       400 ~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~y  435 (436)
                      .++.+.|++++|++.|++++++.|....... .+++|
T Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9999999999999999999999998765544 44443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.93  E-value=4.6e-23  Score=185.60  Aligned_cols=211  Identities=15%  Similarity=0.119  Sum_probs=199.8

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ..+..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++..+|.+..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821          276 VWEL-HRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA  352 (436)
Q Consensus       276 ~~~~-~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  352 (436)
                      +... ++ +++|+.+|+++++  ..|.+..++..+|                      .++...|++++|+.+|+++++.
T Consensus        86 ~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A           86 LCGRLNR-PAESMAYFDKALADPTYPTPYIANLNKG----------------------ICSAKQGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             HHTTTCC-HHHHHHHHHHHHTSTTCSCHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCc-HHHHHHHHHHHHcCcCCcchHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHh
Confidence            9988 75 9999999999999  6677789999999                      8889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          353 NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       353 ~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      .|.+..++..+|.++...|+ +++|+..+++++...| .+..++..++.++...|+.++|..+++.+....|+......
T Consensus       143 ~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          143 QPQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999 9999999999999999 99999999999999999999999999999999998877654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=3.1e-24  Score=199.91  Aligned_cols=230  Identities=11%  Similarity=0.072  Sum_probs=178.8

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAK  274 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~  274 (436)
                      ..+...|.+++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++ .|.+    ..++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            34566677777777777777777777777777777777777777777777777777777777 3332    344777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHH
Q 013821          275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGA  342 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A  342 (436)
                      ++...++ +++|+.+|+++++.+|.+..++..+|.++...|++++|+..+.+++..            ......+++++|
T Consensus        83 ~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           83 ILMKKGQ-DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            7777664 777777777777777777777777777777777777777777644432            355566799999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHCCChHHHH
Q 013821          343 EEYFSRAILANPGDGEIMSQYAKLVWELHHD--HDKALCYFERAVQAS---PA-----DSHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d--~~eA~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~eA~  412 (436)
                      +.+|+++++.+|++..++..+|.++..+|++  +++|+..|++++++.   |+     ...++..+|.++...|++++|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999998752  567999999999886   54     2368899999999999999999


Q ss_pred             HHHHHHHhhCCCChhHHh
Q 013821          413 KSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       413 ~~~~~al~l~p~~~~~~~  430 (436)
                      .+|+++++++|+...+..
T Consensus       242 ~~~~~al~~~p~~~~a~~  259 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAID  259 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhcCccHHHHHH
Confidence            999999999999887655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=1.6e-23  Score=214.09  Aligned_cols=246  Identities=15%  Similarity=0.086  Sum_probs=218.3

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+++.|..++..++.+++ .++.+|.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus        39 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           39 KNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             TCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            478899999999999999 7999999999999999999999999999999999999999999999999999888877552


Q ss_pred             --------------------------------------------------------------------------------
Q 013821          257 --------------------------------------------------------------------------------  256 (436)
Q Consensus       257 --------------------------------------------------------------------------------  256 (436)
                                                                                                      
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (537)
T 3fp2_A          118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS  197 (537)
T ss_dssp             HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------HHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          257 -----------------------------HATMADPGDGE-------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD  300 (436)
Q Consensus       257 -----------------------------~al~~~p~~~~-------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~  300 (436)
                                                   ++++.+|.++.       ++..+|.++...+ ++++|+.+|+++++.+|+ 
T Consensus       198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~-  275 (537)
T 3fp2_A          198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT-  275 (537)
T ss_dssp             HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC-
Confidence                                         33344566544       4666777777776 499999999999999999 


Q ss_pred             HHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW  368 (436)
Q Consensus       301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  368 (436)
                      ..++..+|.++...|++++|+..+.+.+..            .++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            899999999999999999999999988776            78889999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       369 ~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      ..|+ +++|+.+|+++++..|+++.++..+|.++...|++++|+..|++++.+.|...
T Consensus       356 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          356 KQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            9999 99999999999999999999999999999999999999999999999876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=2.4e-23  Score=212.79  Aligned_cols=249  Identities=13%  Similarity=0.099  Sum_probs=225.5

Q ss_pred             CCCChHHHHHhhcCCCCCCch-------hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFD-------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR  250 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  250 (436)
                      ++..+..++..++...+ ...       .++..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++...|++++
T Consensus       217 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  294 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE  294 (537)
T ss_dssp             HHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred             HHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence            34467778888888888 443       46888899999999999999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      |+.+|+++++.+|.++.++..+|.++...++ +++|+..|+++++.+|++..++..+|.++...|++++|...+.+++..
T Consensus       295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  373 (537)
T 3fp2_A          295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK  373 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999875 999999999999999999999999999999999999999999988876


Q ss_pred             ------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh----------cCCHHHHHHHHH
Q 013821          331 ------------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWEL----------HHDHDKALCYFE  382 (436)
Q Consensus       331 ------------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~d~~eA~~~~~  382 (436)
                                  .++...|++++|+.+|+++++..|.+..      .+..+|.++..+          |+ +++|+.+|+
T Consensus       374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~  452 (537)
T 3fp2_A          374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK-FNAAIKLLT  452 (537)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH-HHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH-HHHHHHHHH
Confidence                        8889999999999999999999876543      366778899998          99 999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          383 RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       383 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ++++.+|++..++..+|.++..+|++++|+..|++++++.|.......
T Consensus       453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            999999999999999999999999999999999999999998777544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=7.1e-24  Score=215.44  Aligned_cols=211  Identities=15%  Similarity=0.004  Sum_probs=196.8

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      .+...+.......+ ..+..|..+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.+|...|++++|+.+|++++
T Consensus        86 ~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A           86 KTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             HHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34445666666666 7889999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          260 MADPGDGESWMQYAKLVWEL---------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~---------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      +++|+ ..++..+|.++...         ++ +++|+.+|+++++++|++..+|..+|                      
T Consensus       165 ~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------  220 (474)
T 4abn_A          165 THCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILG----------------------  220 (474)
T ss_dssp             TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------
T ss_pred             hhCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------
Confidence            99999 79999999999988         75 99999999999999999999999999                      


Q ss_pred             hHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          331 LPIQSK--------GDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA  399 (436)
Q Consensus       331 ~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la  399 (436)
                      .++...        |++++|+.+|+++++++|   .++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++
T Consensus       221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~  299 (474)
T 4abn_A          221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAALDPAWPEPQQREQ  299 (474)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            666666        889999999999999999   999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHCCChHHHHHHHHH
Q 013821          400 CFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       400 ~~~~~~g~~~eA~~~~~~  417 (436)
                      .++..+|++++|++.+.+
T Consensus       300 ~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          300 QLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999986643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.92  E-value=1.2e-23  Score=207.58  Aligned_cols=226  Identities=10%  Similarity=0.078  Sum_probs=206.6

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD-SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY  255 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  255 (436)
                      .+++.|...+.+++.+++ .+..+|.++|.++...|+ +++|+.+|+++++++|++..+|.++|.++..+|++++|+..|
T Consensus       111 g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~  189 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI  189 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             CChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence            367789999999999999 899999999999999997 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCchHH-----HHHHHHHHH
Q 013821          256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE-MEDDGED-----DKAQEEHIQ  329 (436)
Q Consensus       256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~~~~  329 (436)
                      +++++++|++..+|+.+|.++..+++ +++|+.+|+++++++|++..+|+++|.++.. .|..++|     +..+.+++.
T Consensus       190 ~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~  268 (382)
T 2h6f_A          190 ADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK  268 (382)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999985 9999999999999999999999999999999 5554888     477777776


Q ss_pred             H------------hHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------CCHHHHHHHHHHH-HH
Q 013821          330 V------------LPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH--------HDHDKALCYFERA-VQ  386 (436)
Q Consensus       330 ~------------~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~d~~eA~~~~~~a-l~  386 (436)
                      .            .++...|  ++++|++.++++ +.+|++..++..+|.++..+|        +.+++|+.+|+++ ++
T Consensus       269 l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          269 LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE  347 (382)
T ss_dssp             HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            6            4555667  699999999998 999999999999999999985        2158999999999 99


Q ss_pred             hCCCCHHHHHHHHHHHHHC
Q 013821          387 ASPADSHVLAAYACFLWET  405 (436)
Q Consensus       387 ~~p~~~~~~~~la~~~~~~  405 (436)
                      ++|.....|..++..+..+
T Consensus       348 ~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          348 KDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             TCGGGHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHH
Confidence            9999999999999887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=5e-23  Score=187.50  Aligned_cols=210  Identities=12%  Similarity=0.092  Sum_probs=179.1

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ++..+..+|.++...|++++|+.+|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            457899999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      +...++ +++|+.+|+++++++|++...+..++.++...|               .++...|++++|+.+|+++++++|+
T Consensus        86 ~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           86 YRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG---------------QKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh---------------HHHHHhccHHHHHHHHHHHHhcCCC
Confidence            999975 999999999999999999976666665555555               8999999999999999999999999


Q ss_pred             --CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          356 --DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       356 --~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                        ++.++.++|.++..+|+      ..++++..+.+.+...+  .+......+.+++|+.+|++++++.|+......
T Consensus       150 ~~~~~~~~~l~~~~~~~~~------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  218 (228)
T 4i17_A          150 KWKTDALYSLGVLFYNNGA------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ  218 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence              99999999999988776      34555666665554333  233344556677888888888888877766544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=1.8e-23  Score=221.64  Aligned_cols=171  Identities=18%  Similarity=0.233  Sum_probs=115.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      .|++++++.++|.+|..+|++++|+.+|+++++++|+++.+++++|.+|..+++ +++|+.+|+++++++|++..+++++
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            456666666666666666666666666666666666666666666666666654 6666666666666666666666666


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      |                      .++..+|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+..|++++++
T Consensus        84 g----------------------~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           84 G----------------------NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKL  140 (723)
T ss_dssp             H----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             H----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence            6                      666666666666666666666666666666666666666666 66666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      +|++..++.++|.++..+|++++|++.|++++++.
T Consensus       141 ~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV  175 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence            66666666666666666666666666666666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-23  Score=214.02  Aligned_cols=249  Identities=14%  Similarity=0.127  Sum_probs=230.0

Q ss_pred             CCChHHHHHhhcC-----C--CCC------CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          179 PVSPPMYLAMGLG-----I--SVP------GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK  245 (436)
Q Consensus       179 p~~a~~~~~~~~~-----~--~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~  245 (436)
                      ++.+..++..++.     +  .+.      .....|..+|.++...|++++|+.+|+++++.+|. ..++..+|.++...
T Consensus       205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~  283 (514)
T 2gw1_A          205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR  283 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC
Confidence            4466677777776     4  221      33578899999999999999999999999999999 99999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      |++++|+..|++++..+|.+..++..+|.++...++ +++|+..|+++++..|.+..++..+|.++...|++++|+..+.
T Consensus       284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  362 (514)
T 2gw1_A          284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS  362 (514)
T ss_dssp             SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999875 9999999999999999999999999999999999999999999


Q ss_pred             HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---hcCCHHHHHHHHHHH
Q 013821          326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWE---LHHDHDKALCYFERA  384 (436)
Q Consensus       326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~d~~eA~~~~~~a  384 (436)
                      +.+..            .++...|++++|+.+|++++...|.+..      ++..+|.++..   .|+ +++|+..|+++
T Consensus       363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a  441 (514)
T 2gw1_A          363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKA  441 (514)
T ss_dssp             HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHH
Confidence            88776            7888999999999999999999998855      99999999999   999 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       385 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +..+|++..++..+|.++...|++++|+..|++++++.|.......
T Consensus       442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  487 (514)
T 2gw1_A          442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ  487 (514)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence            9999999999999999999999999999999999999998766543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=2.9e-23  Score=220.05  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=166.2

Q ss_pred             CCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          192 ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ  271 (436)
Q Consensus       192 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  271 (436)
                      -.| +.+.++.++|.++.++|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+++.+|++
T Consensus         4 s~P-~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            4 SCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             --C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            344 5678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821          272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  351 (436)
                      +|.++..+++ +++|+++|+++++++|++..++.++|                      .+|..+|++++|+.+|++|++
T Consensus        83 Lg~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg----------------------~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           83 MGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLA----------------------SIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHH
Confidence            9999999985 99999999999999999999999999                      899999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      ++|+++.++.++|.++..+|+ +++|++.+++++++.|+
T Consensus       140 l~P~~~~a~~~L~~~l~~~g~-~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          140 LKPDFPDAYCNLAHCLQIVCD-WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTC-CTTHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHhhhhhHHHhccc-HHHHHHHHHHHHHhChh
Confidence            999999999999999999999 99999999999988654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.2e-22  Score=202.95  Aligned_cols=248  Identities=13%  Similarity=0.097  Sum_probs=176.6

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .++++|..++..++..++  ++..|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus        20 g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   97 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS   97 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            356667777777777665  366777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhCCCC-----------------------------------------------------------------------
Q 013821          257 HATMADPGD-----------------------------------------------------------------------  265 (436)
Q Consensus       257 ~al~~~p~~-----------------------------------------------------------------------  265 (436)
                      +++...|.+                                                                       
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
T 2gw1_A           98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF  177 (514)
T ss_dssp             HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred             HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence            777776522                                                                       


Q ss_pred             --------HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHccCchHH
Q 013821          266 --------GESWMQYAKLVWE---LHRDQHRALTYFERAAL-----A--A-------PQDSNILAAYACFLWEMEDDGED  320 (436)
Q Consensus       266 --------~~~~~~la~~~~~---~~~d~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A  320 (436)
                              ..+++.+|.+++.   .+ ++++|+.+|+++++     +  +       |.+..++..+|.++...|++++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  256 (514)
T 2gw1_A          178 ANYDESNEADKELMNGLSNLYKRSPE-SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA  256 (514)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHSSCCTT-HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence                    5555666655554   44 47777777777777     4  3       33456667777777777777777


Q ss_pred             HHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          321 DKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       321 ~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                      ...+.+.+..           .++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|+++++..|
T Consensus       257 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~  335 (514)
T 2gw1_A          257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDP  335 (514)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCh
Confidence            7777765543           566677777777777777777777777777777777777777 7777777777777777


Q ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821          390 ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       390 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      .+..++..+|.++...|++++|+..|++++...|.....
T Consensus       336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  374 (514)
T 2gw1_A          336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV  374 (514)
T ss_dssp             SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHH
Confidence            777777777777777777777777777777777765543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=2.5e-22  Score=183.33  Aligned_cols=204  Identities=14%  Similarity=0.159  Sum_probs=187.3

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.+..++..++...+ .....+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus        38 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  116 (243)
T 2q7f_A           38 DYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK  116 (243)
T ss_dssp             ----CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            55677778889999888 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG  337 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g  337 (436)
                      +++..|.+..++..+|.++...++ +++|+.+|+++++..|++..++..+|                      .++...|
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~  173 (243)
T 2q7f_A          117 ALRAGMENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNENDTEARFQFG----------------------MCLANEG  173 (243)
T ss_dssp             HHHHTCCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HHHHHcC
Confidence            999999999999999999999875 99999999999999999999999999                      8888999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE  406 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  406 (436)
                      ++++|+.+|+++++..|.+..++..+|.++...|+ +++|+.+|+++++++|++..++..++.+....+
T Consensus       174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-REKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999 999999999999999999999998887765544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.90  E-value=1.9e-22  Score=191.83  Aligned_cols=205  Identities=9%  Similarity=-0.016  Sum_probs=151.3

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV  276 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  276 (436)
                      .++..++..+...+++++|++.+++++..  +|+++.+++.+|.++...|++++|+..|++     |.+..++..+|.++
T Consensus        66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~  140 (291)
T 3mkr_A           66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQIL  140 (291)
T ss_dssp             HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence            44455555566666666666666666554  366666666666666666666666666655     55666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                      ..+|+ +++|++.|+++++.+|++.......+.+                    .++...|++++|+.+|+++++.+|++
T Consensus       141 ~~~g~-~~~A~~~l~~~~~~~p~~~~~~l~~a~~--------------------~l~~~~~~~~eA~~~~~~~l~~~p~~  199 (291)
T 3mkr_A          141 LKLDR-LDLARKELKKMQDQDEDATLTQLATAWV--------------------SLAAGGEKLQDAYYIFQEMADKCSPT  199 (291)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------------HHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred             HHCCC-HHHHHHHHHHHHhhCcCcHHHHHHHHHH--------------------HHHhCchHHHHHHHHHHHHHHhCCCc
Confidence            65553 6666666666666666554332222210                    22334589999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhCCCChhHHh
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED-DSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~l~p~~~~~~~  430 (436)
                      +.+++++|.++..+|+ +++|+..|+++++++|+++.++.++|.++...|+.++ +.+++++++++.|++.....
T Consensus       200 ~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            9999999999999999 9999999999999999999999999999999999987 56899999999999887554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=2.9e-21  Score=180.70  Aligned_cols=218  Identities=12%  Similarity=0.094  Sum_probs=198.7

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQ  271 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~  271 (436)
                      +.+.++..+|.++...|++++|+.+|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++.+  ++.+++.
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~   79 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL   79 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence            4567888999999999999999999999998  7888999999999999    999999999999999885  8999999


Q ss_pred             HHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHH
Q 013821          272 YAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPI  333 (436)
Q Consensus       272 la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~  333 (436)
                      +|.++..    .+ ++++|+.+|+++++.  +++.++..+|.++..    .+++++|+..+++.+..          .++
T Consensus        80 lg~~~~~g~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~  156 (273)
T 1ouv_A           80 LGNLYYSGQGVSQ-NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCccc-CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            9999888    76 599999999999988  489999999999999    99999999999987765          667


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 013821          334 QS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE-  404 (436)
Q Consensus       334 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-  404 (436)
                      ..    .+++++|+.+|+++++.  .++.+++.+|.++..    .++ +++|+.+|+++++..|  +.++..+|.++.. 
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELEN--GGGCFNLGAMQYNG  231 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence            77    89999999999999987  468999999999999    888 9999999999999876  7899999999999 


Q ss_pred             ---CCChHHHHHHHHHHHhhCCCC
Q 013821          405 ---TEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       405 ---~g~~~eA~~~~~~al~l~p~~  425 (436)
                         .+++++|+++|++++++.|..
T Consensus       232 ~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCHH
Confidence               999999999999999997753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=9.4e-22  Score=198.20  Aligned_cols=251  Identities=14%  Similarity=0.060  Sum_probs=191.8

Q ss_pred             hcCCCChHHHHHhhcCC---------CCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Q 013821          176 IERPVSPPMYLAMGLGI---------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNY  238 (436)
Q Consensus       176 ~~~p~~a~~~~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~l  238 (436)
                      ..++++|..++.+++.+         ++ ....+|.++|.++..+|++++|+.+|++++++.        +..+.++..+
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~-~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~  142 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEI-RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE  142 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTT-TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence            34667778888877655         22 345677888888888888888888888888752        3456777777


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          239 AQLLQKK--GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       239 a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      |.++...  ++|++|+.+|+++++++|+++.++..++.+++..+  +++++|++.|+++++++|++..++..++..+...
T Consensus       143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            7777654  46888888888888888888888888887765543  2357788888888888888888887777666554


Q ss_pred             ----cCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------
Q 013821          315 ----EDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL--------  370 (436)
Q Consensus       315 ----g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------  370 (436)
                          +++++|...+++.+..            .+|...|++++|+..|+++++.+|+++.++..+|.++...        
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~  302 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR  302 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence                4566777777766655            7788889999999999999999999988888888877542        


Q ss_pred             -----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821          371 -----------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       371 -----------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                                 +. +++|+..|+++++++|.+..++..+|.++...|++++|+.+|++++.+.|+....
T Consensus       303 ~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~  370 (472)
T 4g1t_A          303 ENGMYGKRKLLEL-IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK  370 (472)
T ss_dssp             -----CHHHHHHH-HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence                       23 5678888888888888888888888999999999999999999999888765443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=2.1e-22  Score=204.55  Aligned_cols=194  Identities=14%  Similarity=0.123  Sum_probs=184.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF  290 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~  290 (436)
                      +.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++++|.++.+|+.+|.+|+..++ +++|+.+|
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~  160 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD-VTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            5578899999999999999999999999999999999 999999999999999999999999999999985 99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---------GDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      +++++++|+ ..++..+|                      .++...         |++++|+.+|+++++++|+++.+|+
T Consensus       161 ~~al~~~p~-~~~~~~lg----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  217 (474)
T 4abn_A          161 SGALTHCKN-KVSLQNLS----------------------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY  217 (474)
T ss_dssp             HHHHTTCCC-HHHHHHHH----------------------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhhCCC-HHHHHHHH----------------------HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999 79999999                      666666         9999999999999999999999999


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          362 QYAKLVWEL--------HHDHDKALCYFERAVQASP---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       362 ~la~~~~~~--------g~d~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ++|.++..+        |+ +++|+.+|+++++++|   .++.+|.++|.++..+|++++|++.|++++++.|++..+..
T Consensus       218 ~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~  296 (474)
T 4abn_A          218 ILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ  296 (474)
T ss_dssp             HHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999        99 9999999999999999   99999999999999999999999999999999999876543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=6.2e-22  Score=180.21  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=148.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      +.++..++.+|.++...|++++|+..|+++++++| .+..+++.+|.++...++ +++|+.+|+++++.+|++..++..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK-YKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCcchHHHHHHH
Confidence            55789999999999999999999999999999999 899999999999999975 9999999999999999999999999


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHHHHH
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-------EIMSQYAKLVWELHHDHDKALCY  380 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~d~~eA~~~  380 (436)
                      |                      .++..+|++++|+.+|+++++++|+++       .++..+|.++..+|+ +++|+..
T Consensus        83 ~----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~  139 (228)
T 4i17_A           83 S----------------------AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEEN  139 (228)
T ss_dssp             H----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             H----------------------HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHH
Confidence            9                      899999999999999999999999999       679999999999999 9999999


Q ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHCCCh
Q 013821          381 FERAVQASPA--DSHVLAAYACFLWETEED  408 (436)
Q Consensus       381 ~~~al~~~p~--~~~~~~~la~~~~~~g~~  408 (436)
                      |+++++++|+  +..++..+|.++...|+.
T Consensus       140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          140 YKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999  999999999999887765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=1.5e-22  Score=188.46  Aligned_cols=223  Identities=9%  Similarity=-0.030  Sum_probs=168.1

Q ss_pred             CCCChHHHHHhhcCCCCC---CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVP---GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY  254 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~  254 (436)
                      +++.+..++..++...+.   ..+..|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~   99 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   99 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            455677888888876432   34578888999999999999999999999999998899999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013821          255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ  334 (436)
Q Consensus       255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  334 (436)
                      |+++++.+|.+..++..+|.++...++ +++|+.+|+++++++|++......++                      .. .
T Consensus       100 ~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~----------------------~~-~  155 (275)
T 1xnf_A          100 FDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLY----------------------LA-E  155 (275)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HH-H
T ss_pred             HHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HH-H
Confidence            999999999988999999988888874 99999999999999998886665554                      22 3


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHH
Q 013821          335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~e  410 (436)
                      ..|++++|+..+++++...|.+...+. ++.++...++ .++|+..+++++...|.    +..++..+|.++...|++++
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  233 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS  233 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSC-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcC-HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence            446777777777777777666654443 5555555556 66777777776655543    24666777777777777777


Q ss_pred             HHHHHHHHHhhCCCCh
Q 013821          411 DSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       411 A~~~~~~al~l~p~~~  426 (436)
                      |+..|++++.+.|...
T Consensus       234 A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          234 ATALFKLAVANNVHNF  249 (275)
T ss_dssp             HHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhCCchhH
Confidence            7777777777766443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=8.6e-22  Score=188.40  Aligned_cols=220  Identities=16%  Similarity=0.128  Sum_probs=200.3

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhh-------hCCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMP-------NFDDS-------AEAEEYYKRMID-EYPCHPLLLRNYAQLLQKK  245 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~-------~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~  245 (436)
                      .+...|.+++...+ ..+..|..+|.++.       ..|++       ++|+..|+++++ ++|++..+|..+|.++...
T Consensus        34 ~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           34 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            45567889999888 79999999999876       45886       999999999999 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821          246 GDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ  324 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  324 (436)
                      |++++|+..|++++++.|.++. +|..+|.++...++ +++|+..|+++++..|....++...+                
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a----------------  175 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA----------------  175 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHH----------------
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHH----------------
Confidence            9999999999999999999987 99999999998885 99999999999999999988877666                


Q ss_pred             HHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHH
Q 013821          325 EEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-DSHVLAAYA  399 (436)
Q Consensus       325 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~---~p~-~~~~~~~la  399 (436)
                            .+.. ..|++++|+.+|+++++.+|+++.+|..++.++..+|+ +++|+.+|++++..   .|+ ...+|..++
T Consensus       176 ------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~l~p~~~~~l~~~~~  248 (308)
T 2ond_A          176 ------LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFL  248 (308)
T ss_dssp             ------HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred             ------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence                  4432 37999999999999999999999999999999999999 99999999999995   553 788999999


Q ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          400 CFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       400 ~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      .++...|+.++|..++++++++.|+.
T Consensus       249 ~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          249 AFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999863

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=5.6e-22  Score=184.51  Aligned_cols=209  Identities=13%  Similarity=-0.010  Sum_probs=182.3

Q ss_pred             cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+++.+..++.+++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+
T Consensus        57 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  135 (275)
T 1xnf_A           57 GLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  135 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence            477788999999999998 7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK  336 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  336 (436)
                      ++++++|.+......++.+ ...+ ++++|+..+++++...|.+...+. ++                      .++...
T Consensus       136 ~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~-~~----------------------~~~~~~  190 (275)
T 1xnf_A          136 AFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWN-IV----------------------EFYLGN  190 (275)
T ss_dssp             HHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHH-HH----------------------HHHTTS
T ss_pred             HHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHH-HH----------------------HHHHHh
Confidence            9999999999777766644 5555 599999999999999998866554 55                      566678


Q ss_pred             CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013821          337 GDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       337 g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  412 (436)
                      ++.++|+..+++++...|.    +..++..+|.++..+|+ +++|+.+|++++.++|++..   .++.++..+|++++|+
T Consensus       191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~  266 (275)
T 1xnf_A          191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQ  266 (275)
T ss_dssp             SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhH
Confidence            8889999999999877664    37899999999999999 99999999999999997643   4477888999999998


Q ss_pred             HHH
Q 013821          413 KSS  415 (436)
Q Consensus       413 ~~~  415 (436)
                      +.|
T Consensus       267 ~~~  269 (275)
T 1xnf_A          267 DDL  269 (275)
T ss_dssp             ---
T ss_pred             HHH
Confidence            887

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.4e-21  Score=179.58  Aligned_cols=197  Identities=13%  Similarity=0.022  Sum_probs=187.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI  303 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~  303 (436)
                      .+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...++ +++|+.+|++++++.|++       ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            46789999999999999999999999999999 999999999999999985 999999999999999887       799


Q ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013821          304 LAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC  379 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~  379 (436)
                      +..+|.++...|++++|+..+.+.+..    .++...|++++|+..+++++..+|.+..++..+|.++...|+ +++|+.
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~  160 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD-WPNAVK  160 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC-HHHHHH
Confidence            999999999999999999999999987    788999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +|++++..+|.++.++..+|.++...|++++|+..|++++.+.|.......
T Consensus       161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  211 (258)
T 3uq3_A          161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI  211 (258)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence            999999999999999999999999999999999999999999998766544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.89  E-value=9.4e-22  Score=198.19  Aligned_cols=249  Identities=16%  Similarity=0.131  Sum_probs=185.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhh---hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMP---NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYR  250 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~  250 (436)
                      +++.|..+|.+++.+++ +++.++.++|.++.   ..++.++|+..|+++++++|++..++..+|..+..    .+++++
T Consensus       153 ~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred             cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            34578888999999998 78888888887744   46778899999999999999999999888877654    467889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------------
Q 013821          251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME---------------  315 (436)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------  315 (436)
                      |+.++++++..+|.+..++..+|.++...+. +++|+..|+++++.+|++..++..+|.++...+               
T Consensus       232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~  310 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR  310 (472)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999988875 999999999999999999999999998876532               


Q ss_pred             ----CchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH-HhcCCHH
Q 013821          316 ----DDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE---IMSQYAKLVW-ELHHDHD  375 (436)
Q Consensus       316 ----~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~-~~g~d~~  375 (436)
                          .+++|+..+.+.+..            .++...|++++|+.+|++++.++|.+..   ++..+|.++. ..|+ ++
T Consensus       311 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  389 (472)
T 4g1t_A          311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC-ED  389 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC-HH
T ss_pred             HHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC-HH
Confidence                234555555555544            7888999999999999999999887643   4566776554 5566 99


Q ss_pred             HHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013821          376 KALCYFERAVQA------------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV  429 (436)
Q Consensus       376 eA~~~~~~al~~------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  429 (436)
                      +|+..|++++++                        +|.++.++..+|.++..+|++++|+++|++++++.|..+.+.
T Consensus       390 ~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~  467 (472)
T 4g1t_A          390 KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS  467 (472)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence            999999988866                        456667899999999999999999999999999988776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.89  E-value=3.3e-22  Score=186.11  Aligned_cols=225  Identities=11%  Similarity=0.020  Sum_probs=195.1

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED  253 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~  253 (436)
                      +++.+..++..++.+++ ....+|..+|.++...|++++|+.+|+++++ .|.+    ..++..+|.++...|++++|+.
T Consensus        18 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~   95 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQ   95 (272)
T ss_dssp             CHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            45578888999999988 7888999999999999999999999999999 4433    3569999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---
Q 013821          254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---  330 (436)
Q Consensus       254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  330 (436)
                      +|+++++.+|.++.++..+|.++...++ +++|+.+|+++++.+|.+..++..+|......+++++|+..+.+.++.   
T Consensus        96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A           96 QYQAAVDRDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             HHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999999875 999999999999999999999999995555566999999999988776   


Q ss_pred             ---------hHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          331 ---------LPIQSKGD---LEGAEEYFSRAILAN---PG-----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       331 ---------~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                               .++...|+   +++|+..|++++++.   |+     ...++..+|.++...|+ +++|+.+|+++++++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD-KVKADAAWKNILALDPT  253 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred             chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcc
Confidence                     66777788   999999999999986   44     23789999999999999 99999999999999999


Q ss_pred             CHHHHHHHHHHHHHCC
Q 013821          391 DSHVLAAYACFLWETE  406 (436)
Q Consensus       391 ~~~~~~~la~~~~~~g  406 (436)
                      ++.++..++.+....+
T Consensus       254 ~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          254 NKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             CHHHHHHHC-------
T ss_pred             HHHHHHHhhhhhcccc
Confidence            9999999888766544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.88  E-value=4.9e-22  Score=196.45  Aligned_cols=250  Identities=11%  Similarity=0.051  Sum_probs=204.5

Q ss_pred             cCCCChHHHHHhhcCCCCCCch----hhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Q 013821          177 ERPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKG  246 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g  246 (436)
                      .+++++..++..++.+.+ ...    ..|..+|.++...|++++|+.+|+++++.      .|....++..+|.++...|
T Consensus        62 g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           62 GDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             TCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            467788888888888877 443    57888999999999999999999999887      4666788889999999999


Q ss_pred             CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhC------
Q 013821          247 DLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD-----------------QHRALTYFERAALAA------  297 (436)
Q Consensus       247 ~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d-----------------~~~A~~~~~~al~~~------  297 (436)
                      ++++|+.+|++++.+      .+....++..+|.++...+ +                 +++|+.+|++++++.      
T Consensus       141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            999999999999887      4556778888998888876 6                 888999988888764      


Q ss_pred             CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 013821          298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD---  356 (436)
Q Consensus       298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~---  356 (436)
                      +....++..+|.++...|++++|+..+.+.+..                  .++...|++++|+.+|++++.+.+..   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            234557888899999999999998888876654                  77888899999999999998887644   


Q ss_pred             ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       357 ---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                         ..++..+|.++..+|+ +++|+.+|++++.+.+..      ..++..+|.++..+|++++|+.+|++++++.+....
T Consensus       300 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence               6788889999999988 999999999988875432      358888999999999999999999999988776554


Q ss_pred             HH
Q 013821          428 AV  429 (436)
Q Consensus       428 ~~  429 (436)
                      ..
T Consensus       379 ~~  380 (411)
T 4a1s_A          379 XX  380 (411)
T ss_dssp             HH
T ss_pred             ch
Confidence            43

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.9e-21  Score=190.94  Aligned_cols=246  Identities=9%  Similarity=0.046  Sum_probs=145.1

Q ss_pred             CCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013821          178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD  247 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~  247 (436)
                      +++.+..++..++.+.+ ..    ...+..+|.++...|++++|+.+|++++..      .|....++..+|.++...|+
T Consensus        24 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  102 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN  102 (406)
T ss_dssp             CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence            45556666666666555 23    245566666666666666666666666554      22334556666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh-----
Q 013821          248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALA-----  296 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~-----  296 (436)
                      +++|+.++++++.+.|..      ..++..+|.++...+ +                    +++|+.+|++++++     
T Consensus       103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~  181 (406)
T 3sf4_A          103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG  181 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            666666666666654432      335666666665554 4                    66666666666655     


Q ss_pred             -CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013821          297 -APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD-  356 (436)
Q Consensus       297 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~-  356 (436)
                       .+....++..+|.++...|++++|...+.+++..                  .++...|++++|+.+|++++.+.+.. 
T Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  261 (406)
T 3sf4_A          182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  261 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence             2223445566666666666666666666654433                  45556666666666666666665443 


Q ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       357 -----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                           ..++..+|.++...|+ +++|+.+|++++++.+..      ..++..+|.++..+|++++|+.+|++++++.+..
T Consensus       262 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          262 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence                 4566666666666666 666666666666654332      3456666666666666666666666666665444


Q ss_pred             h
Q 013821          426 Q  426 (436)
Q Consensus       426 ~  426 (436)
                      .
T Consensus       341 ~  341 (406)
T 3sf4_A          341 G  341 (406)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=193.66  Aligned_cols=228  Identities=10%  Similarity=0.001  Sum_probs=203.1

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD  265 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~  265 (436)
                      .....+..+|.++...|++++|+.+|+++++..|.+.    .++..+|.++...|++++|+.++++++.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3456788999999999999999999999999999984    68999999999999999999999999887      3445


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGE  319 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~  319 (436)
                      ..++..+|.++...++ +++|+.++++++++.|..      ..++..+|.++...|+                    +++
T Consensus        87 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            7899999999999875 999999999999987653      5588999999999999                    999


Q ss_pred             HHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHH
Q 013821          320 DDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       320 A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~  375 (436)
                      |+..+.+.+..                  .++...|++++|+.+|++++++.+...      .++.++|.++..+|+ ++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~  244 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hH
Confidence            99999876653                  788899999999999999999866543      389999999999999 99


Q ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          376 KALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       376 eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      +|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence            9999999999987765      6788999999999999999999999999986544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.87  E-value=5.9e-22  Score=195.89  Aligned_cols=226  Identities=12%  Similarity=0.026  Sum_probs=203.6

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGE  267 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  267 (436)
                      ...+..+|..+...|++++|+.+|+++++..|++.    .++..+|.++...|++++|+.+|++++++      .|....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            45667788999999999999999999999999987    58999999999999999999999999998      566788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------chHHHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALA------APQDSNILAAYACFLWEMED-----------------DGEDDKAQ  324 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~  324 (436)
                      ++..+|.++...++ +++|+.+|++++++      .+....++..+|.++...|+                 +++|+..+
T Consensus       128 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          128 SSGNLGNTLKVMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            99999999999885 99999999999998      56678899999999999999                 99999999


Q ss_pred             HHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHH
Q 013821          325 EEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHDKALCY  380 (436)
Q Consensus       325 ~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~eA~~~  380 (436)
                      .+.+..                  .++...|++++|+.+|++++++.+...      .++..+|.++..+|+ +++|+.+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~  285 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHH
Confidence            876553                  788999999999999999999876533      389999999999999 9999999


Q ss_pred             HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      |++++.+.+..      ..++..+|.++..+|++++|+.+|++++.+.+..
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            99999987754      5788999999999999999999999999986543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.87  E-value=2e-20  Score=172.13  Aligned_cols=196  Identities=14%  Similarity=0.148  Sum_probs=185.1

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus        52 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  130 (252)
T 2ho1_A           52 NTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE  130 (252)
T ss_dssp             CTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55678888988888888 78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821          258 ATM--ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS  335 (436)
Q Consensus       258 al~--~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  335 (436)
                      ++.  ..|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++                      .++..
T Consensus       131 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~  187 (252)
T 2ho1_A          131 ASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEMA----------------------DLLYK  187 (252)
T ss_dssp             HTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHH----------------------HHHHH
T ss_pred             HHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHHH----------------------HHHHH
Confidence            999  889999999999999999875 99999999999999999999999999                      88899


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY  398 (436)
Q Consensus       336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~l  398 (436)
                      .|++++|+.+|+++++..|.+..++..++.++...|+ +++|+.+++++++..|+++.++..+
T Consensus       188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-RDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999 9999999999999999998766543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=5.4e-21  Score=177.92  Aligned_cols=209  Identities=13%  Similarity=0.035  Sum_probs=171.2

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESW  269 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  269 (436)
                      ..+..+..+|..++..|++++|+..|+++++.+|++   +.+++.+|.++...|++++|+..|+++++..|++   +.++
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            566788889999999999999999999999999999   8999999999999999999999999999998854   6789


Q ss_pred             HHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          270 MQYAKLVWE--------LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       270 ~~la~~~~~--------~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      +.+|.+++.        .++ +++|+..|+++++..|++..+...+..+....+...+.     .+....+|...|++++
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~  166 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARK-----QYEAARLYERRELYEA  166 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHccCHHH
Confidence            999999998        775 99999999999999999876663332221111100000     0000088999999999


Q ss_pred             HHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHC
Q 013821          342 AEEYFSRAILANPG---DGEIMSQYAKLVWEL----------HHDHDKALCYFERAVQASPADS---HVLAAYACFLWET  405 (436)
Q Consensus       342 A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~  405 (436)
                      |+..|+++++..|+   .+.+++.+|.++..+          |+ +++|+..|+++++..|+++   .+...++.++..+
T Consensus       167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~  245 (261)
T 3qky_A          167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER-YRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL  245 (261)
T ss_dssp             HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999998   567999999999977          78 9999999999999999985   5566677777666


Q ss_pred             CChHHH
Q 013821          406 EEDEDD  411 (436)
Q Consensus       406 g~~~eA  411 (436)
                      ++++++
T Consensus       246 ~~~~~~  251 (261)
T 3qky_A          246 TELEGD  251 (261)
T ss_dssp             HHHHTC
T ss_pred             HHhhhh
Confidence            665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.87  E-value=1.7e-21  Score=206.59  Aligned_cols=184  Identities=11%  Similarity=-0.040  Sum_probs=169.5

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMI--------DEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE  267 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  267 (436)
                      +++.++...|   ...|++++|++.|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus       392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  468 (681)
T 2pzi_A          392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR  468 (681)
T ss_dssp             TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence            3444444444   67799999999999999        999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~  347 (436)
                      +|+.+|.++...++ +++|+..|+++++++|++..+++++|                      .++..+|++++ +.+|+
T Consensus       469 a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~lg----------------------~~~~~~g~~~~-~~~~~  524 (681)
T 2pzi_A          469 LVWYRAVAELLTGD-YDSATKHFTEVLDTFPGELAPKLALA----------------------ATAELAGNTDE-HKFYQ  524 (681)
T ss_dssp             HHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCSHHHHHHH----------------------HHHHHHTCCCT-TCHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCChHH-HHHHH
Confidence            99999999999975 99999999999999999999999999                      88889999999 99999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       348 ~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                      ++++++|++..+++++|.++..+|+ +++|+..|+++++++|++..++.++|.++...++
T Consensus       525 ~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          525 TVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999 9999999999999999999999999999988776

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.87  E-value=1.5e-21  Score=185.63  Aligned_cols=245  Identities=9%  Similarity=0.041  Sum_probs=199.0

Q ss_pred             CCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013821          178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD  247 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~  247 (436)
                      +++++..++..++.+.+ ..    ...+..+|.++...|++++|+.++++++..      .|....++..+|.++...|+
T Consensus        20 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   98 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN   98 (338)
T ss_dssp             CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence            45577788888888777 44    467888999999999999999999998876      34456788999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhC----
Q 013821          248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALAA----  297 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~~----  297 (436)
                      +++|+.++++++++.+..      ..++..+|.++...+ +                    +++|+.++++++.+.    
T Consensus        99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~  177 (338)
T 3ro2_A           99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG  177 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999998875543      448888998888876 6                    899999999988762    


Q ss_pred             --CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013821          298 --PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD-  356 (436)
Q Consensus       298 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~-  356 (436)
                        +....++..+|.++...|++++|...+.+.+..                  .++...|++++|+.++++++.+.+.. 
T Consensus       178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence              334567888999999999999999988876654                  67788899999999999999886654 


Q ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       357 -----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                           ..++..+|.++..+|+ +++|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          258 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence                 6788899999999999 999999999998875432      3578889999999999999999999999887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.87  E-value=2.3e-21  Score=184.37  Aligned_cols=225  Identities=9%  Similarity=-0.000  Sum_probs=198.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGES  268 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~  268 (436)
                      ..+...|..+...|++++|+.+|+++++..|++.    .++..+|.++...|++++|+.++++++.+      .+....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            4567789999999999999999999999999984    78899999999999999999999999887      4455789


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chHHHH
Q 013821          269 WMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGEDDK  322 (436)
Q Consensus       269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~  322 (436)
                      +..+|.++...++ +++|+.++++++++.+..      ..++..+|.++...|+                    +++|..
T Consensus        86 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           86 SGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            9999999999875 999999999999986543      4488999999999999                    889988


Q ss_pred             HHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHH
Q 013821          323 AQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKAL  378 (436)
Q Consensus       323 ~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~  378 (436)
                      .+.+.+..                  .++...|++++|+.++++++++.+..      ..++..+|.++...|+ +++|+
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~  243 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence            88766543                  77889999999999999999886542      3489999999999999 99999


Q ss_pred             HHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          379 CYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       379 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      .++++++.+.+..      ..++..+|.++...|++++|+.++++++.+.+..
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            9999999887655      6788999999999999999999999999886543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.86  E-value=5.8e-20  Score=165.15  Aligned_cols=179  Identities=15%  Similarity=0.144  Sum_probs=168.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                      ..|+++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-NDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHHHHH
Confidence            4677889999999999999999999999999999999999999999999999875 999999999999999999999999


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAIL--ANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                      +|                      .++... |++++|+.+|+++++  ..|.+..++..+|.++...|+ +++|+.+|++
T Consensus        82 l~----------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~  138 (225)
T 2vq2_A           82 YG----------------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKR  138 (225)
T ss_dssp             HH----------------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HH----------------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence            99                      888999 999999999999999  667778999999999999999 9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CChhHH
Q 013821          384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP-IRQGAV  429 (436)
Q Consensus       384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p-~~~~~~  429 (436)
                      +++..|.+..++..+|.++...|++++|+..+++++.+.| ......
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  185 (225)
T 2vq2_A          139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL  185 (225)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence            9999999999999999999999999999999999999998 665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=5.7e-21  Score=180.55  Aligned_cols=205  Identities=16%  Similarity=0.142  Sum_probs=180.5

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------  261 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  261 (436)
                      .....+..+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++..      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            44578889999999999999999999999995        5667789999999999999999999999999987      


Q ss_pred             --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013821          262 --DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL  331 (436)
Q Consensus       262 --~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  331 (436)
                        .|....++..+|.++...++ +++|+.+|++++++.        |....++..+|                      .
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la----------------------~  161 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA----------------------L  161 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------H
T ss_pred             CCChHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----------------------H
Confidence              35567899999999998875 999999999999884        45566778888                      8


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 013821          332 PIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----------------  387 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~----------------  387 (436)
                      ++...|++++|+.+|++++..        .|....++..+|.++..+|+ +++|+.+|+++++.                
T Consensus       162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  240 (311)
T 3nf1_A          162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPI  240 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence            888889999999999999988        66677889999999999999 99999999999874                


Q ss_pred             ---------------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          388 ---------------------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       388 ---------------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                                                       .|....++..+|.++..+|++++|+++|++++++.|.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                                             4556688999999999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.86  E-value=1.5e-21  Score=166.68  Aligned_cols=147  Identities=12%  Similarity=0.065  Sum_probs=103.0

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d  282 (436)
                      .||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.+|+.+|.++...++ 
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-   80 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-   80 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-
Confidence            4667777777777777777777777777777777777777777777777777777777777777777777777776654 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY-FSRAILANPGDGEIMS  361 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~  361 (436)
                      +++|+.+|+++++++|+++.+++.+|                      .++...|++++|... ++++++++|+++.++.
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIA----------------------ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence            77777777777777777777777777                      666666666655544 4677777777777777


Q ss_pred             HHHHHHHHhcC
Q 013821          362 QYAKLVWELHH  372 (436)
Q Consensus       362 ~la~~~~~~g~  372 (436)
                      .++.++...|+
T Consensus       139 l~~~ll~~~G~  149 (150)
T 4ga2_A          139 LKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHTCCC
T ss_pred             HHHHHHHHhCc
Confidence            77776666665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.86  E-value=7e-20  Score=159.16  Aligned_cols=172  Identities=16%  Similarity=0.099  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      ..++..+|.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+++++++..|.+..++..+|   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a---   83 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA-VDRGTELLERSLADAPDNVKVATVLG---   83 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHH---
Confidence            35566777777777777777777777777777777777777777766653 77777777777777777777777777   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                                         .++...|++++|+.++++++...|.+..++..+|.++...|+ +++|+.++++++...|.+
T Consensus        84 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           84 -------------------LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             -------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred             -------------------HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccc
Confidence                               666677777777777777777777777777777777777777 777777777777777777


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ..++..+|.++...|++++|+.++++++.+.|....
T Consensus       144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            777777777777777777777777777777666544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=4.6e-20  Score=171.55  Aligned_cols=182  Identities=16%  Similarity=0.061  Sum_probs=164.9

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013821          225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-  300 (436)
Q Consensus       225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-  300 (436)
                      ....|.++..++.+|..++..|++++|+..|+++++.+|.+   +.+++.+|.+++..++ +++|+..|+++++..|++ 
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE-YLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHCCCCc
Confidence            45688899999999999999999999999999999999998   9999999999999985 999999999999998854 


Q ss_pred             --HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 013821          301 --SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS--------KGDLEGAEEYFSRAILANPGDGEIM----------  360 (436)
Q Consensus       301 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~----------  360 (436)
                        ..+++.+|                      .++..        .|++++|+..|+++++..|++..+.          
T Consensus        87 ~~~~a~~~lg----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           87 RVPQAEYERA----------------------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             THHHHHHHHH----------------------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH----------------------HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence              67788899                      77777        9999999999999999999986665          


Q ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC----------CChHHHHHHHHHHHh
Q 013821          361 -------SQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWET----------EEDEDDSKSSDQFQQ  420 (436)
Q Consensus       361 -------~~la~~~~~~g~d~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~~~~al~  420 (436)
                             +.+|.++..+|+ +++|+..|+++++..|+   ...++..+|.++..+          |++++|+..|+++++
T Consensus       145 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          145 AKLARKQYEAARLYERREL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence                   889999999999 99999999999999998   457999999999987          899999999999999


Q ss_pred             hCCCChhHHh
Q 013821          421 VAPIRQGAVT  430 (436)
Q Consensus       421 l~p~~~~~~~  430 (436)
                      ..|+......
T Consensus       224 ~~p~~~~~~~  233 (261)
T 3qky_A          224 IFPDSPLLRT  233 (261)
T ss_dssp             HCTTCTHHHH
T ss_pred             HCCCChHHHH
Confidence            9999865443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=6.8e-20  Score=159.24  Aligned_cols=171  Identities=14%  Similarity=0.139  Sum_probs=164.2

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      ...+..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  357 (436)
                      ..++ +++|+.+|+++++..|.+..++..+|                      .++...|++++|+.+++++++..|.+.
T Consensus        88 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A           88 QVQK-YDLAVPLLIKVAEANPINFNVRFRLG----------------------VALDNLGRFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             HHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcC-HHHHHHHHHHHHhcCcHhHHHHHHHH----------------------HHHHHcCcHHHHHHHHHHHHhcCccch
Confidence            9875 99999999999999999999999999                      888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      .++..+|.++...|+ +++|+.+++++++..|++.
T Consensus       145 ~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          145 KVHRAIAFSYEQMGR-HEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCch
Confidence            999999999999999 9999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=2e-20  Score=168.57  Aligned_cols=177  Identities=10%  Similarity=-0.003  Sum_probs=136.3

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN----------------YAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      ...+...|..+...|++++|+.+|+++++.+|+++.+++.                +|.++...|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567788888888999999999999999999988888888                888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CH
Q 013821          262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DL  339 (436)
Q Consensus       262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~  339 (436)
                      +|+++.+++.+|.++...++ +++|+.+|+++++++|+++.+++.+|                      .+|...|  +.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~~~~~~~~~~~  140 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLG----------------------NYYYLTAEQEK  140 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHHhHHHH
Confidence            88888888888888888874 88888888888888888888888888                      5555444  34


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      ..+...|++++...|. ..+++.+|.++...|+ +++|+.+|+++++++|+ ..+...+..
T Consensus       141 ~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~-~~~~~~l~~  198 (208)
T 3urz_A          141 KKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR-YEKARNSLQKVILRFPS-TEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT-HHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence            5667777776543322 3467778888888888 88888888888888886 333333333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=3.4e-19  Score=169.26  Aligned_cols=204  Identities=13%  Similarity=0.020  Sum_probs=172.8

Q ss_pred             CCChHHHHHhhcC--CCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          179 PVSPPMYLAMGLG--ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN  256 (436)
Q Consensus       179 p~~a~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  256 (436)
                      .+.+...+...+.  +.+ +++..+..+|.++...|++++|+..|++     |.+..++..+|.++..+|++++|+..|+
T Consensus        81 ~~~A~~~l~~ll~~~~~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDV-TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3455566665543  356 7889999999999999999999999998     8999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821          257 HATMADPGDGESWMQYAKLVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS  335 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  335 (436)
                      ++++.+|++.......+.+.... .+++++|+.+|+++++..|+++.+++.+|                      .++..
T Consensus       155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la----------------------~~~~~  212 (291)
T 3mkr_A          155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA----------------------ACHMA  212 (291)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHHH
T ss_pred             HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHH
Confidence            99999999875544444322222 23599999999999999999999999999                      89999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821          336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK-ALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~e-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      +|++++|+..|+++++.+|+++.++.++|.++..+|+ +.+ +..+++++++++|+++.+..    +..+.+.+++++..
T Consensus       213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-PPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ  287 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 665 67899999999999987654    34455566666555


Q ss_pred             H
Q 013821          415 S  415 (436)
Q Consensus       415 ~  415 (436)
                      |
T Consensus       288 ~  288 (291)
T 3mkr_A          288 Y  288 (291)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=3.6e-20  Score=166.87  Aligned_cols=176  Identities=11%  Similarity=0.045  Sum_probs=154.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ----------------YAKLVWELHRDQHRALTYFERAA  294 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~d~~~A~~~~~~al  294 (436)
                      .++.++..|..+...|++++|+..|+++++.+|+++.+++.                +|.++...++ +++|+..|++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al   81 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-YDKAYLFYKELL   81 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999                9999999875 999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-C
Q 013821          295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH-D  373 (436)
Q Consensus       295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-d  373 (436)
                      +++|++..++..+|                      .++...|++++|+.+|+++++++|+++.+++++|.+++..|+ +
T Consensus        82 ~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           82 QKAPNNVDCLEACA----------------------EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            99999999999999                      889999999999999999999999999999999999987764 1


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ...+...+.+++...|. ..+++.+|.++...|++++|+..|++++++.|+......
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~  195 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT  195 (208)
T ss_dssp             HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence            45677788877643332 357788999999999999999999999999998654433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.84  E-value=1e-19  Score=173.89  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDL-------YRAEDYYNHATM-ADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  279 (436)
                      ++|+..|++++..+|.++.+|+.+|.++..       .|++       ++|+..|+++++ ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5886       999999999999 7999999999999999888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          280 HRDQHRALTYFERAALAAPQDSN-ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      + ++++|+..|++++++.|.+.. +|..++                      .++.+.|++++|+..|+++++..|.+..
T Consensus       113 ~-~~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~  169 (308)
T 2ond_A          113 M-KYEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH  169 (308)
T ss_dssp             T-CHHHHHHHHHHHHTSSSSCTHHHHHHHH----------------------HHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred             C-CHHHHHHHHHHHHhccccCccHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence            7 499999999999999999987 899999                      7788899999999999999999999988


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          359 IMSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       359 ~~~~la~~~~~-~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      +|...+.+... .|+ +++|+..|+++++..|+++.+|..++.++..+|++++|+..|++++..
T Consensus       170 ~~~~~a~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          170 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHTSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            88877766554 577 999999999999999999999999999999999999999999999996

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=4.8e-21  Score=163.52  Aligned_cols=147  Identities=19%  Similarity=0.177  Sum_probs=135.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 013821          237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED  316 (436)
Q Consensus       237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  316 (436)
                      .||.++..+|++++|+..+++++..+|+++..++.+|.+|+..++ +++|+.+|+++++++|+++.+|..+|        
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg--------   72 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE-YDLAKKYICTYINVQERDPKAHRFLG--------   72 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH--------
Confidence            478888999999999999999999999999999999999999975 99999999999999999999999999        


Q ss_pred             chHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHH
Q 013821          317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY-FERAVQASPADSHVL  395 (436)
Q Consensus       317 ~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~-~~~al~~~p~~~~~~  395 (436)
                                    .++...|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|... ++++++++|+++.++
T Consensus        73 --------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A           73 --------------LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             --------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHH
T ss_pred             --------------HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHH
Confidence                          899999999999999999999999999999999999999999 8877665 699999999999999


Q ss_pred             HHHHHHHHHCCC
Q 013821          396 AAYACFLWETEE  407 (436)
Q Consensus       396 ~~la~~~~~~g~  407 (436)
                      ..++.++...|+
T Consensus       138 ~l~~~ll~~~G~  149 (150)
T 4ga2_A          138 KLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCc
Confidence            999999998886

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=4.4e-20  Score=175.21  Aligned_cols=202  Identities=13%  Similarity=0.055  Sum_probs=167.0

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPC------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GES  268 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  268 (436)
                      +...|.++...|++++|+.+|++++++.+.      .+.++.++|.+|..+|++++|+.+|++++++.+..      ..+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333467888899999999999999998532      25789999999999999999999999999987653      568


Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          269 WMQYAKLVWEL-HRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       269 ~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      +..+|.+|... ++ +++|+.+|++++++.|.+      ..++.++|                      .++..+|++++
T Consensus       120 ~~~lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~  176 (292)
T 1qqe_A          120 KFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCA----------------------DLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred             HHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------------HHHHHhCCHHH
Confidence            99999999885 74 999999999999998754      45677778                      88999999999


Q ss_pred             HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HCCC
Q 013821          342 AEEYFSRAILANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-----VLAAYACFLW--ETEE  407 (436)
Q Consensus       342 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~  407 (436)
                      |+.+|++++++.|++..       ++.++|.++..+|+ +++|+.+|+++++++|....     .+..++..+.  ..++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999987653       68899999999999 99999999999999998664     3445566554  4678


Q ss_pred             hHHHHHHHHHHHhhCCCCh
Q 013821          408 DEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       408 ~~eA~~~~~~al~l~p~~~  426 (436)
                      +++|+..|.+++.++|...
T Consensus       256 ~~~A~~~~~~~~~l~~~~~  274 (292)
T 1qqe_A          256 LSEHCKEFDNFMRLDKWKI  274 (292)
T ss_dssp             HHHHHHHHTTSSCCCHHHH
T ss_pred             HHHHHHHhccCCccHHHHH
Confidence            9999999999988887653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.83  E-value=6.1e-19  Score=167.90  Aligned_cols=224  Identities=12%  Similarity=0.117  Sum_probs=198.3

Q ss_pred             CChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHH
Q 013821          180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD--DSAEAEEYYKRMIDEYPCHPLLLRNYAQLL----QKK---GDLYR  250 (436)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~~~la~~~----~~~---g~~~~  250 (436)
                      +++......++.+.+ .+..+|...|.++...|  ++++++.++++++..+|++..+|..++.++    ...   +++++
T Consensus        50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            367778888899999 79999999999999888  999999999999999999999999999988    666   78999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821          251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQH--RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      ++.++.++++.+|.+..+|...+.++...+. ++  +++++++++++.+|.+..+|...+                    
T Consensus       129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N~sAW~~R~--------------------  187 (306)
T 3dra_A          129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKNNSAWSHRF--------------------  187 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTCHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCCHHHHHHHH--------------------
Confidence            9999999999999999999999988888875 77  999999999999999999999998                    


Q ss_pred             HHhHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Q 013821          329 QVLPIQSKGD------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSHVLAAYA  399 (436)
Q Consensus       329 ~~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p~~~~~~~~la  399 (436)
                        .++...++      ++++++++.+++..+|.+..+|++++.++...|+..++....+.+++.++   |.++.++..++
T Consensus       188 --~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la  265 (306)
T 3dra_A          188 --FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA  265 (306)
T ss_dssp             --HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred             --HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence              56666665      89999999999999999999999999999999995555667888888776   88999999999


Q ss_pred             HHHHHCCChHHHHHHHHHHHh-hCCCChh
Q 013821          400 CFLWETEEDEDDSKSSDQFQQ-VAPIRQG  427 (436)
Q Consensus       400 ~~~~~~g~~~eA~~~~~~al~-l~p~~~~  427 (436)
                      .++.+.|+.++|+++|+.+.+ .+|....
T Consensus       266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~  294 (306)
T 3dra_A          266 KIYTQQKKYNESRTVYDLLKSKYNPIRSN  294 (306)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence            999999999999999999996 7886443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.82  E-value=7.9e-20  Score=193.72  Aligned_cols=176  Identities=11%  Similarity=-0.014  Sum_probs=166.4

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT--------MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP  298 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p  298 (436)
                      .+|+++.+++..+   ...|++++|++.|++++        +.+|++..+++.+|.++...++ +++|+..|+++++.+|
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD-VAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHhccCc
Confidence            4678887777766   78999999999999999        9999999999999999999985 9999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013821          299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL  378 (436)
Q Consensus       299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~  378 (436)
                      ++..+|+.+|                      .++...|++++|+..|+++++++|++..+++++|.++..+|+ +++ +
T Consensus       465 ~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~  520 (681)
T 2pzi_A          465 WRWRLVWYRA----------------------VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-H  520 (681)
T ss_dssp             CCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-T
T ss_pred             chHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-H
Confidence            9999999999                      889999999999999999999999999999999999999999 999 9


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      .+|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..+..
T Consensus       521 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~  572 (681)
T 2pzi_A          521 KFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARL  572 (681)
T ss_dssp             CHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHH
Confidence            9999999999999999999999999999999999999999999999877654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=7.1e-19  Score=160.22  Aligned_cols=188  Identities=11%  Similarity=0.006  Sum_probs=139.2

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWMQ  271 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  271 (436)
                      +..+..+|..++..|++++|+..|+++++..|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            45678888888888999999999999999888763   68888999999999999999999999999888754   7888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821          272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  351 (436)
                      +|.++...+..                 ....+..++                      ..+...|++++|+..|+++++
T Consensus        84 ~g~~~~~~~~~-----------------~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~~l~  124 (225)
T 2yhc_A           84 RGLTNMALDDS-----------------ALQGFFGVD----------------------RSDRDPQQARAAFSDFSKLVR  124 (225)
T ss_dssp             HHHHHHHHHC-----------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhh-----------------hhhhhhccc----------------------hhhcCcHHHHHHHHHHHHHHH
Confidence            88887764310                 000011111                      223334444444444444444


Q ss_pred             hCCCCHH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHH
Q 013821          352 ANPGDGE-----------------IMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDD  411 (436)
Q Consensus       352 ~~p~~~~-----------------~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA  411 (436)
                      ..|++..                 ....+|.++...|+ +++|+..|+++++..|+++   .++..+|.++.++|++++|
T Consensus       125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A  203 (225)
T 2yhc_A          125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA  203 (225)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence            4444432                 23678999999999 9999999999999999986   6799999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 013821          412 SKSSDQFQQVAPIR  425 (436)
Q Consensus       412 ~~~~~~al~l~p~~  425 (436)
                      ++.++++....|..
T Consensus       204 ~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          204 EKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHCCSCC
T ss_pred             HHHHHHHHhhCCCc
Confidence            99999999888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=1.4e-19  Score=168.24  Aligned_cols=190  Identities=17%  Similarity=0.178  Sum_probs=166.5

Q ss_pred             hhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQY  272 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l  272 (436)
                      ...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++.+        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3458888888888888884        2556789999999999999999999999999987        35567899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013821          273 AKLVWELHRDQHRALTYFERAALA--------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE  344 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~  344 (436)
                      |.++...++ +++|+.+|++++++        +|....++..+|                      .++...|++++|+.
T Consensus        92 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~  148 (283)
T 3edt_B           92 AVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA----------------------LLCQNQGKAEEVEY  148 (283)
T ss_dssp             HHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------HHHHTTTCHHHHHH
T ss_pred             HHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH----------------------HHHHHcCCHHHHHH
Confidence            999998875 99999999999998        466677888888                      88889999999999


Q ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Q 013821          345 YFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS----------------------------  388 (436)
Q Consensus       345 ~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~----------------------------  388 (436)
                      +|++++++        .|....++..+|.++..+|+ +++|+.+|++++++.                            
T Consensus       149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (283)
T 3edt_B          149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK  227 (283)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence            99999998        67778899999999999999 999999999999862                            


Q ss_pred             ---------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          389 ---------------------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       389 ---------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                                           |....++..+|.++..+|++++|+.+|++++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                                 3445788999999999999999999999999763

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.81  E-value=1.3e-17  Score=155.79  Aligned_cols=186  Identities=16%  Similarity=0.160  Sum_probs=170.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNI  303 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~  303 (436)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.++.+++.+|.++..    .+ ++++|+.+|+++++.+  ++.+
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSNG   76 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHHH
Confidence            578899999999999999999999999999999  8889999999999988    76 5999999999999985  8999


Q ss_pred             HHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          304 LAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAK  365 (436)
Q Consensus       304 ~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~  365 (436)
                      ++.+|.++..    .+++++|+..+++.+..          .+|..    .+++++|+.+|+++++..  +..++.++|.
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~  154 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence            9999999999    99999999999987765          77888    999999999999999976  6899999999


Q ss_pred             HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCC
Q 013821          366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       366 ~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p  423 (436)
                      ++..    .++ +++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..|
T Consensus       155 ~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          155 LYDAGRGTPKD-LKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             HHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            9998    888 999999999999874  57899999999999    9999999999999999865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=4e-19  Score=155.40  Aligned_cols=162  Identities=12%  Similarity=0.084  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      ++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|++++..+| ++..+..++.+.   
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~~p-~~~~~~~~~~~~---   83 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ-FELAQELLATIPLEYQ-DNSYKSLIAKLE---   83 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC-HHHHHHHHTTCCGGGC-CHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHhhhccC-ChHHHHHHHHHH---
Confidence            34444444444444444444444444444444444444444444432 4444444444444444 433333222110   


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--H
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--S  392 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~  392 (436)
                                        +...++..+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+.  .
T Consensus        84 ------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~  144 (176)
T 2r5s_A           84 ------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDG  144 (176)
T ss_dssp             ------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTT
T ss_pred             ------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChH
Confidence                              0111122234555556666666656666666666666655 666666666666555543  3


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          393 HVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       393 ~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      .++..++.++..+|+.++|+..|++++.
T Consensus       145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          145 EVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            4555566666666666666666655553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=3.6e-18  Score=175.50  Aligned_cols=218  Identities=16%  Similarity=0.113  Sum_probs=195.1

Q ss_pred             hHHHHHhhcCCCCCCchhhhhhHHhhhhh-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcC
Q 013821          182 PPMYLAMGLGISVPGFDDAGEVVDLIMPN-------FDDSA-------EAEEYYKRMID-EYPCHPLLLRNYAQLLQKKG  246 (436)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g  246 (436)
                      +...|.+++...+ ..+..|...|.++..       .|+++       +|+..|+++++ ..|++..+|..+|.++...|
T Consensus       257 a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          257 VMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  335 (530)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence            3457888888888 789999999999886       79987       89999999997 79999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          247 DLYRAEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       247 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      ++++|+..|++++++.|.++ .+|..++.++...++ +++|+..|+++++..|.....+...+                 
T Consensus       336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a-----------------  397 (530)
T 2ooe_A          336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA-----------------  397 (530)
T ss_dssp             CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHH-----------------
T ss_pred             CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHH-----------------
Confidence            99999999999999999985 699999999888876 99999999999999888777766555                 


Q ss_pred             HHHHHhH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 013821          326 EHIQVLP-IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYAC  400 (436)
Q Consensus       326 ~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~~~la~  400 (436)
                           .+ +...|++++|..+|+++++..|+++.+|..++.++...|+ +++|..+|++++...|.++    .+|..+..
T Consensus       398 -----~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~  471 (530)
T 2ooe_A          398 -----LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLA  471 (530)
T ss_dssp             -----HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred             -----HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-HhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence                 33 4468999999999999999999999999999999999999 9999999999999877654    48889999


Q ss_pred             HHHHCCChHHHHHHHHHHHhhCCC
Q 013821          401 FLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       401 ~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      +....|+.+.+..++.++++..|.
T Consensus       472 ~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          472 FESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCch
Confidence            999999999999999999999873

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.80  E-value=2.4e-18  Score=162.96  Aligned_cols=169  Identities=12%  Similarity=0.093  Sum_probs=135.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      -|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|++++..+|+....+...
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCchhhcchHHHHHHH
Confidence            377777888888888888888888888888888888888888888888777764 8888888888888888655544555


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      +                      ..+...++.++|+..|++++..+|++..+++++|.++...|+ +++|+..|+++++.
T Consensus       192 ~----------------------~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~  248 (287)
T 3qou_A          192 Q----------------------IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRX  248 (287)
T ss_dssp             H----------------------HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             H----------------------HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhc
Confidence            5                      556667777778888888888888888888888888888888 88888888888888


Q ss_pred             CCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          388 SPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       388 ~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      +|++  ..++..++.++..+|+.++|+..|++++.
T Consensus       249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            8887  77888888888888888888888888775

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=3.9e-19  Score=155.43  Aligned_cols=164  Identities=16%  Similarity=0.136  Sum_probs=149.2

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+...
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999 88877776655443


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD--  356 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--  356 (436)
                      ...+..+|+..|+++++.+|+++.+++.+|                      .++...|++++|+..|+++++.+|+.  
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELA----------------------VQYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            322245689999999999999999999999                      89999999999999999999999975  


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQ  386 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~  386 (436)
                      ..++..+|.++..+|+ .++|+..|++++.
T Consensus       144 ~~a~~~l~~~~~~~g~-~~~A~~~y~~al~  172 (176)
T 2r5s_A          144 GEVKKTFMDILSALGQ-GNAIASKYRRQLY  172 (176)
T ss_dssp             THHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-CCcHHHHHHHHHH
Confidence            6699999999999999 9999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.79  E-value=7.3e-19  Score=172.79  Aligned_cols=223  Identities=12%  Similarity=0.028  Sum_probs=159.2

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDE---YPC---HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DGE  267 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~  267 (436)
                      +..+|.++...|++++|+.+|+++++.   .++   .+.++..+|.+|...|++++|+.++++++++.+.       ...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            344788888888888888888888876   222   4477888888888888888888888888887433       245


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------  330 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------  330 (436)
                      ++..+|.++...++ +++|+.+|++++++.+..      ..++.++|.++...|++++|+..+.+++..           
T Consensus       186 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          186 CHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            78888888888774 888888888888775432      246778887777777777766666665552           


Q ss_pred             -------hHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          331 -------LPIQSKGDLEGAEEYFSRAILAN-----PGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       331 -------~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                             .++..+|++++|+.++++++++.     |.....+..+|.++...|+  .+.+|+..+++. ...|....++.
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~  343 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence                   66777788888888888887773     3323335567777776664  033444444433 11223346788


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          397 AYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       397 ~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      .+|.++..+|++++|+.+|++++.+....
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~~~~~i  372 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQVRQLI  372 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999886443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=1.5e-18  Score=164.73  Aligned_cols=178  Identities=13%  Similarity=0.057  Sum_probs=151.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHH
Q 013821          213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      ++++|+.+|+++              |.+|...|++++|+.+|++++++.+.      .+.++.++|.+|...++ +++|
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-HHHH
Confidence            599999999988              66788999999999999999998532      26789999999999875 9999


Q ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCCC---
Q 013821          287 LTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPGD---  356 (436)
Q Consensus       287 ~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~---  356 (436)
                      +.+|++++++.+..      ..++.++|                      .+|... |++++|+.+|++++++.|.+   
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg----------------------~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELG----------------------EILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------HHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            99999999997653      45667777                      888886 99999999999999998754   


Q ss_pred             ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-------VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       357 ---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                         ..++.++|.++..+|+ +++|+.+|++++.+.|++..       ++..+|.++..+|++++|+.+|++++.+.|.+.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence               5689999999999999 99999999999999987653       678999999999999999999999999999876


Q ss_pred             hH
Q 013821          427 GA  428 (436)
Q Consensus       427 ~~  428 (436)
                      ..
T Consensus       234 ~~  235 (292)
T 1qqe_A          234 DS  235 (292)
T ss_dssp             --
T ss_pred             Cc
Confidence            53

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=1.7e-18  Score=143.11  Aligned_cols=117  Identities=19%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                      ++|+.+..+..+|..+++.|+|++|+..|+++++++|.++.+|..+|.++..+++ +++|+..|+++++++|++..+|+.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhhHHHHH
Confidence            4444445555555555555555555555555555555555555555555444442 555555555555555555555555


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                      +|                      .++..+|++++|+..|+++++++|++.+++..++.+
T Consensus        87 lg----------------------~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KA----------------------ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HH----------------------HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            55                      444444555555555555555555555544444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.79  E-value=5.8e-18  Score=175.49  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821          211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF  290 (436)
Q Consensus       211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~  290 (436)
                      .|++++|+.+|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..++..+|.++...++ +++|+.+|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR-HAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999875 99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821          291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL  370 (436)
Q Consensus       291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  370 (436)
                      +++++++|++..++..+|                      .++...|++++|+++|+++++.+|++..++.++|.++..+
T Consensus        81 ~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLG----------------------HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999                      8899999999999999999999999999999999999999


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          371 ---HHDHDKALCYFERAVQASPADSHVLAAYA  399 (436)
Q Consensus       371 ---g~d~~eA~~~~~~al~~~p~~~~~~~~la  399 (436)
                         |+ +++|+..|+++++.+|.+...+..++
T Consensus       139 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          139 CDWRA-LDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             TCCTT-HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             hcccc-HHHHHHHHHHHHhcCCcccChHHHhC
Confidence               99 99999999999999999887777766

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=3.4e-18  Score=141.31  Aligned_cols=122  Identities=12%  Similarity=0.086  Sum_probs=109.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821          257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK  336 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  336 (436)
                      ++..++|+.+.++..+|..++..++ |++|+.+|+++++++|.++.++.++|                      .++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~----------------------~~~~~~   60 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRA----------------------ACLTKL   60 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHT
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHh----------------------hHHHhh
Confidence            3455788889999999999999875 99999999999999999999999999                      888889


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL  402 (436)
Q Consensus       337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~  402 (436)
                      |++++|+..|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++.++
T Consensus        61 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999 99999999999999999999998888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.78  E-value=1e-16  Score=153.56  Aligned_cols=238  Identities=11%  Similarity=0.064  Sum_probs=198.6

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD----------SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--L  248 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~  248 (436)
                      ++..+...++.+.| .+..+|...+.++...+.          +++++.+++.++..+|++..+|...+.++...++  +
T Consensus        48 eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           48 SVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            57888999999999 899999999999887776          6899999999999999999999999999999994  9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821          249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      ++++.++.++++.+|.+..+|...+.++...+..++++++++.++++.+|.+..+|..++.++........+..      
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~------  200 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP------  200 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc------
Confidence            99999999999999999999999999998887546999999999999999999999999966554422110000      


Q ss_pred             HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------HHDHDKALCYFERAVQASPADSHVLAA  397 (436)
Q Consensus       329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~d~~eA~~~~~~al~~~p~~~~~~~~  397 (436)
                        ..-...+.++++++++.+++..+|++..+|+++..++...           +. ++++++.+.+++++.|++...+..
T Consensus       201 --~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~-l~~el~~~~elle~~pd~~w~l~~  277 (331)
T 3dss_A          201 --QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV-LQSELESCKELQELEPENKWCLLT  277 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH-HHHHHHHHHHHHhhCcccchHHHH
Confidence              0000014689999999999999999999998777776655           45 899999999999999999766555


Q ss_pred             HHHHHH---HCCChHHHHHHHHHHHhhCCCChhH
Q 013821          398 YACFLW---ETEEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       398 la~~~~---~~g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      ++.+..   ..|..++...++.+..+++|...+-
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~  311 (331)
T 3dss_A          278 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  311 (331)
T ss_dssp             HHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence            554432   3577889999999999999976554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=9.6e-17  Score=163.21  Aligned_cols=229  Identities=10%  Similarity=0.075  Sum_probs=167.0

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAE  252 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~  252 (436)
                      .+..++.++...   +.+.++..+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+
T Consensus       169 ~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~  243 (490)
T 2xm6_A          169 MAREWYSKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR  243 (490)
T ss_dssp             HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            444455544432   345666677776666    67777777777777664  356667777777765    67777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCchHHHHH
Q 013821          253 DYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-----EDDGEDDKA  323 (436)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~  323 (436)
                      .+|+++++.  .++.+++.+|.++..    .+ ++++|+.+|+++++.  .++.+++.+|.++...     +++++|+.+
T Consensus       244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~-d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~  318 (490)
T 2xm6_A          244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAK-EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISW  318 (490)
T ss_dssp             HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSC-CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred             HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence            777777654  456777777777665    43 578888888877654  5677788888888777     777888888


Q ss_pred             HHHHHHH----------hHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 013821          324 QEEHIQV----------LPIQSKG---DLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQ  386 (436)
Q Consensus       324 ~~~~~~~----------~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~  386 (436)
                      +.+..+.          .+|...|   ++++|+.+|+++++.  .++.+++++|.++..    .++ +++|+.+|+++++
T Consensus       319 ~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~  395 (490)
T 2xm6_A          319 YTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAE  395 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHh
Confidence            7766654          5555545   788888888888876  568888888888888    666 8999999998887


Q ss_pred             hCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCC
Q 013821          387 ASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       387 ~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~  424 (436)
                      ..  ++.++.++|.+|..    .+++++|+.+|+++++..|+
T Consensus       396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            54  57888889999888    88899999999999888754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=8.4e-18  Score=159.18  Aligned_cols=167  Identities=11%  Similarity=0.064  Sum_probs=156.2

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      .....+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999777666777766


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      +...++ .++|+..|+++++.+|++..+++.+|                      .++...|++++|+..|+++++.+|+
T Consensus       195 l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la----------------------~~l~~~g~~~~A~~~l~~~l~~~p~  251 (287)
T 3qou_A          195 LLXQAA-DTPEIQQLQQQVAENPEDAALATQLA----------------------LQLHQVGRNEEALELLFGHLRXDLT  251 (287)
T ss_dssp             HHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhhcc-cCccHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcccc
Confidence            777765 89999999999999999999999999                      8999999999999999999999999


Q ss_pred             C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821          356 D--GEIMSQYAKLVWELHHDHDKALCYFERAVQ  386 (436)
Q Consensus       356 ~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~  386 (436)
                      +  ..++.+++.++..+|+ .++|...|++++.
T Consensus       252 ~~~~~a~~~l~~~~~~~g~-~~~a~~~~r~al~  283 (287)
T 3qou_A          252 AADGQTRXTFQEILAALGT-GDALASXYRRQLY  283 (287)
T ss_dssp             GGGGHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Confidence            8  8999999999999999 9999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.76  E-value=2.5e-17  Score=170.71  Aligned_cols=160  Identities=14%  Similarity=0.033  Sum_probs=136.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821          245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ  324 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  324 (436)
                      .|++++|+..|+++++.+|.+..+++.+|.++...++ +++|+..|+++++++|++..++..+|                
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD-TTAGEMAVQRGLALHPGHPEAVARLG----------------   64 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTSTTCHHHHHHHH----------------
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence            4789999999999999999999999999999999975 99999999999999999999999999                


Q ss_pred             HHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       325 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                            .++..+|++++|+.+|+++++++|++..+++++|.++..+|+ +++|+..|+++++++|++..++..++.++..
T Consensus        65 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           65 ------RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             ------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ------HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                  889999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             C---CChHHHHHHHHHHHhhCCCChhH
Q 013821          405 T---EEDEDDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       405 ~---g~~~eA~~~~~~al~l~p~~~~~  428 (436)
                      +   |++++|++.|+++++..|....+
T Consensus       138 ~~~~g~~~~A~~~~~~al~~~p~~~~~  164 (568)
T 2vsy_A          138 LCDWRALDVLSAQVRAAVAQGVGAVEP  164 (568)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred             hhccccHHHHHHHHHHHHhcCCcccCh
Confidence            9   99999999999999999886543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=6.6e-20  Score=177.79  Aligned_cols=152  Identities=9%  Similarity=0.060  Sum_probs=117.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 013821          246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYACF  310 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la~~  310 (436)
                      +++++|+..|++++..+|.++.++..+|.+++..++ +++|+.+|++++++.|.+               ..++.++|  
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla--  203 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA--  203 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH--
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH--
Confidence            334444444444444444444444444444444442 555555555555555444               67888899  


Q ss_pred             HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                                          .++..+|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+
T Consensus       204 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~  262 (336)
T 1p5q_A          204 --------------------MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPN  262 (336)
T ss_dssp             --------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSS
T ss_pred             --------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCC
Confidence                                899999999999999999999999999999999999999999 99999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q 013821          391 DSHVLAAYACFLWETEEDEDD-SKSSDQFQQV  421 (436)
Q Consensus       391 ~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l  421 (436)
                      +..++..++.++..+|++++| ...|++++..
T Consensus       263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998 4567776653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.76  E-value=3.6e-17  Score=159.75  Aligned_cols=244  Identities=14%  Similarity=0.072  Sum_probs=202.0

Q ss_pred             CCCChHHHHHhhcCCCCCCch----hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCC
Q 013821          178 RPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGD  247 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~  247 (436)
                      +++.+..++..++...+....    .++..+|.++...|++++|+.++++++...|...      .++..+|.++...|+
T Consensus        29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~  108 (373)
T 1hz4_A           29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF  108 (373)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence            445677777777776653322    3678899999999999999999999999765432      447889999999999


Q ss_pred             HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013821          248 LYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM  314 (436)
Q Consensus       248 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~  314 (436)
                      +++|+.++++++++.        |....++..+|.+++..++ +++|+.++++++.+.+.     ...++..++.++...
T Consensus       109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  187 (373)
T 1hz4_A          109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR  187 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence            999999999999874        3345678889999999875 99999999999999875     346788999999999


Q ss_pred             cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc
Q 013821          315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWELH  371 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g  371 (436)
                      |++++|...+++.+..                   .++...|++++|..++++++...+..    ...+..++.++...|
T Consensus       188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  267 (373)
T 1hz4_A          188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG  267 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence            9999999998866543                   23668999999999999999877653    346788999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          372 HDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      + +++|+..+++++...+..      ..++..++.++...|++++|...+++++.+.+
T Consensus       268 ~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          268 E-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            9 999999999998875431      25788899999999999999999999998753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=4.9e-16  Score=157.95  Aligned_cols=212  Identities=11%  Similarity=0.136  Sum_probs=102.1

Q ss_pred             hhhhhhHHhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          198 DDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESW  269 (436)
Q Consensus       198 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  269 (436)
                      +.++..+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3444444444444    44444444444444433  234444444444444    44444444444444443  244444


Q ss_pred             HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------h
Q 013821          270 MQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------L  331 (436)
Q Consensus       270 ~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~  331 (436)
                      +.+|.+|..    .+ ++++|+.+|+++++.  .++.+++.+|.++..    .+++++|...+.+....          .
T Consensus       187 ~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  263 (490)
T 2xm6_A          187 NQLGYMYSRGLGVER-NDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY  263 (490)
T ss_dssp             HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            444444443    22 344455555444443  234444444444443    44444444444433322          3


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          332 PIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPADSHVLAAYACFL  402 (436)
Q Consensus       332 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~  402 (436)
                      ++..    .+++++|+.+|+++++.  .++.+++.+|.++...     ++ +++|+.+|+++++.  .++.++..+|.++
T Consensus       264 ~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y  338 (490)
T 2xm6_A          264 ILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQ--GDATAQANLGAIY  338 (490)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence            3333    45555555555555433  3455555555555544     34 55555555555553  2345555555555


Q ss_pred             HHCC---ChHHHHHHHHHHHhh
Q 013821          403 WETE---EDEDDSKSSDQFQQV  421 (436)
Q Consensus       403 ~~~g---~~~eA~~~~~~al~l  421 (436)
                      ...|   ++++|+.+|+++.+.
T Consensus       339 ~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          339 FRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCcccHHHHHHHHHHHHHC
Confidence            5544   455555555555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.75  E-value=1.2e-17  Score=155.04  Aligned_cols=209  Identities=14%  Similarity=0.116  Sum_probs=159.1

Q ss_pred             CCCChHHHHHhhcCC-------CCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNYAQLL  242 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~  242 (436)
                      +++.|..++.+++.+       +....+.++..+|.++...|++++|+.+|+++++..        |....++..+|.++
T Consensus        16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~   95 (283)
T 3edt_B           16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY   95 (283)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            555666666666653       222456889999999999999999999999999873        55668999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA  306 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~  306 (436)
                      ...|++++|+.+|++++.+        +|....++..+|.++...++ +++|+.+|++++++        .|....++..
T Consensus        96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            9999999999999999998        46678899999999999875 99999999999999        6777888999


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHH---------------------hHHHH------cCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQV---------------------LPIQS------KGDLEGAEEYFSRAILANPGDGEI  359 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~---------------------~~~~~------~g~~~~A~~~~~~al~~~p~~~~~  359 (436)
                      +|.++...|++++|...+.+.+..                     ..+..      ...+.++..+++.+....|....+
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT  254 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            997777776666666666665543                     00011      111233333333332234566778


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          360 MSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                      +..+|.++..+|+ +++|+.+|++++++.
T Consensus       255 ~~~la~~~~~~g~-~~~A~~~~~~al~~~  282 (283)
T 3edt_B          255 LRSLGALYRRQGK-LEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHhh
Confidence            9999999999999 999999999998753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=7.5e-17  Score=165.64  Aligned_cols=188  Identities=15%  Similarity=0.151  Sum_probs=171.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDLY-------RAEDYYNHATM-ADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  279 (436)
                      .+++..|++++..+|.++.+|+.+|.++..       .|+++       +|+..|+++++ ..|++..+|..++.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999986       79987       99999999997 8999999999999998888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          280 HRDQHRALTYFERAALAAPQDS-NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      ++ +++|...|++++++.|.++ .+|..++                      .++.+.|++++|+..|++|++..|....
T Consensus       335 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~Al~~~~~~~~  391 (530)
T 2ooe_A          335 MK-YEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH  391 (530)
T ss_dssp             TC-HHHHHHHHHHHHHSSSSCHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred             CC-HHHHHHHHHHHhCccccCchHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence            75 9999999999999999985 6899999                      7777889999999999999999998888


Q ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          359 IMSQYAKLV-WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       359 ~~~~la~~~-~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      .+...+.+. ...|+ +++|..+|+++++..|+++.+|..++.++...|+.++|...|++++...|...
T Consensus       392 ~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          392 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             HHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            887777664 35788 99999999999999999999999999999999999999999999999876543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.75  E-value=2.5e-16  Score=150.85  Aligned_cols=193  Identities=13%  Similarity=0.090  Sum_probs=176.3

Q ss_pred             CCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821          211 FDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       211 ~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  279 (436)
                      .|++ ++|+.++.+++..+|++..+|...+.++...+.          +++++.++..++..+|++..+|...+.++...
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l  121 (331)
T 3dss_A           42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  121 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence            3554 589999999999999999999999999988776          78999999999999999999999999999888


Q ss_pred             cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 013821          280 HR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       280 ~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~  357 (436)
                      +. ++++++.++.++++.+|.+..+|...+                      .+....|. ++++++++.++++.+|.|.
T Consensus       122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~----------------------~vl~~l~~~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          122 PEPNWARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CcccHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence            74 489999999999999999999999999                      77777888 6999999999999999999


Q ss_pred             HHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CChHHHH
Q 013821          358 EIMSQYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-----------EEDEDDS  412 (436)
Q Consensus       358 ~~~~~la~~~~~~--------------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~eA~  412 (436)
                      .+|.+++.++..+              +. ++++++++.+++..+|++..+|+.+..++...           +.+++++
T Consensus       180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el  258 (331)
T 3dss_A          180 SSWHYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL  258 (331)
T ss_dssp             HHHHHHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence            9999999999988              56 89999999999999999999998777777666           4578999


Q ss_pred             HHHHHHHhhCCCCh
Q 013821          413 KSSDQFQQVAPIRQ  426 (436)
Q Consensus       413 ~~~~~al~l~p~~~  426 (436)
                      +.+.+++++.|+..
T Consensus       259 ~~~~elle~~pd~~  272 (331)
T 3dss_A          259 ESCKELQELEPENK  272 (331)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHhhCcccc
Confidence            99999999999863

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.75  E-value=2.4e-17  Score=161.83  Aligned_cols=221  Identities=14%  Similarity=-0.001  Sum_probs=159.9

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DG  266 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~  266 (436)
                      .+...|..+...|++++|+.+|+++++..+      ..+.++..+|.+|...|++++|+.++++++++.+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            567789999999999999999999998632      24578999999999999999999999999987543       25


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------  330 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------  330 (436)
                      .++..+|.++...++ +++|+.+|++++++.+.      ...++.++|.++...|++++|+..+.+++..          
T Consensus       183 ~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          183 QSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            678899999999875 99999999999987432      2457788997777766666666666655552          


Q ss_pred             -------hHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          331 -------LPIQSKGDLEGAEEYFSRAILANP-----GDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       331 -------~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                             .++...|++++|+.++++++++.+     .....+..++.++...++  .+.+|+.++++. ...|....++.
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~  340 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACAR  340 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence                   566666667777777776666632     223334444444443332  033344433331 11122235677


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          397 AYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       397 ~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      .+|.++...|++++|+.+|++++++.
T Consensus       341 ~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          341 SAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999998864

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=163.78  Aligned_cols=211  Identities=14%  Similarity=0.114  Sum_probs=168.2

Q ss_pred             CCCChHHHHHhhcCC-------CCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLL  242 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~  242 (436)
                      +++.+..++..++.+       +......++..+|.++...|++++|+.+|++++..        .|....++..+|.++
T Consensus        42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  121 (311)
T 3nf1_A           42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY  121 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            444677777777764       22255688999999999999999999999999987        355668999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA  306 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~  306 (436)
                      ...|++++|+.+|++++++.        |....++..+|.++...++ +++|+.+|+++++.        .|....++..
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  200 (311)
T 3nf1_A          122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN  200 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999874        5567889999999998875 99999999999998        6777888999


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHH---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQV---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEI  359 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~  359 (436)
                      +|.++...|++++|...+.+.+..                           ..+...+.+.+|+..+++++...|....+
T Consensus       201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  280 (311)
T 3nf1_A          201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT  280 (311)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence            998888888888888888877653                           23344556666777777777788888999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          360 MSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      +..+|.++..+|+ +++|+.+|++++++.|.
T Consensus       281 ~~~la~~~~~~g~-~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          281 LKNLGALYRRQGK-FEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHTC-HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHHhhc
Confidence            9999999999999 99999999999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.74  E-value=3e-16  Score=149.28  Aligned_cols=189  Identities=13%  Similarity=0.135  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc--CCH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG--DLYRAEDYYNHATMADPGDGESWMQYAKLV----WELH--RDQ  283 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~~--~d~  283 (436)
                      +..++|+.++.++|.++|++..+|...+.++...|  ++++++.++.+++..+|++..+|+..+.++    ...+  +++
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            44479999999999999999999999999999999  999999999999999999999999999998    5552  469


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHH
Q 013821          284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--GAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~  361 (436)
                      ++++.++.++++.+|.+..+|...+                      +++...|.++  ++++++.++++.+|.|..+|.
T Consensus       127 ~~EL~~~~~~l~~~pkny~aW~~R~----------------------~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          127 YREFDILEAMLSSDPKNHHVWSYRK----------------------WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999999999                      8888888888  999999999999999999999


Q ss_pred             HHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhC
Q 013821          362 QYAKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSSDQFQQVA  422 (436)
Q Consensus       362 ~la~~~~~~g~d-----~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~  422 (436)
                      +.+.++..+++.     ++++++++.+++..+|.+..+|..++.++.+.|+..+++ ..+.+++.+.
T Consensus       185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~  251 (306)
T 3dra_A          185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE  251 (306)
T ss_dssp             HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence            999999887642     789999999999999999999999999999999966644 4666666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=8.1e-18  Score=143.65  Aligned_cols=112  Identities=16%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013821          255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ  334 (436)
Q Consensus       255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  334 (436)
                      +++++.++|+++.+++.+|.+++..++ +++|+.+|++++.++|+++.+|.++|                      .++.
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~~~~~~~lg----------------------~~~~   81 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYNVDYIMGLA----------------------AIYQ   81 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHH
Confidence            444444555555555555555555543 55555555555555555555555555                      5555


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                      .+|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|++++++.|+
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSND  136 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC
T ss_pred             HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC
Confidence            55555555555555555555555555555555555555 55555555555555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=9.5e-18  Score=143.21  Aligned_cols=121  Identities=11%  Similarity=0.027  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      +-.+-..++++++++|++..+++.+|                      .++...|++++|+.+|++++.++|.++.+|++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg----------------------~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~   75 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYA----------------------YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG   75 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34444578889999999999999999                      89999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      +|.++..+|+ +++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus        76 lg~~~~~~g~-~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           76 LAAIYQIKEQ-FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999 99999999999999999999999999999999999999999999999998765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=1.8e-16  Score=142.99  Aligned_cols=176  Identities=14%  Similarity=0.065  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---DQHRALTYFE  291 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---d~~~A~~~~~  291 (436)
                      .+|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++++.  .++.+++.+|.+|.. ++   ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            4678889998886  68899999999999999999999999999875  688999999988876 42   6999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 013821          292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS----KGDLEGAEEYFSRAILANP--GDGEIMSQYAK  365 (436)
Q Consensus       292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~  365 (436)
                      ++++  +.++.+++++|                      .+|..    .+++++|+.+|+++++..+  .++.++++||.
T Consensus        78 ~A~~--~g~~~a~~~Lg----------------------~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~  133 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLA----------------------RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL  133 (212)
T ss_dssp             HHHH--TTCHHHHHHHH----------------------HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHH----------------------HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence            9954  57899999999                      66665    7899999999999998887  35899999999


Q ss_pred             HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhh
Q 013821          366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-E-----EDEDDSKSSDQFQQV  421 (436)
Q Consensus       366 ~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~l  421 (436)
                      +|..    .++ +++|+.+|+++++. |.++.++.++|.+|... |     ++++|+.+|+++.+.
T Consensus       134 ~y~~g~g~~~d-~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          134 IYASGVHGPED-DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHTSSSSCC-HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCC-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            9988    666 99999999999988 66778899999998865 3     899999999999887

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=1e-17  Score=162.29  Aligned_cols=154  Identities=13%  Similarity=0.081  Sum_probs=144.9

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 013821          210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYAK  274 (436)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~  274 (436)
                      .++++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP  354 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  354 (436)
                      ++...++ +++|+.+|+++++++|++..+++.+|                      .++..+|++++|+.+|+++++++|
T Consensus       205 ~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          205 CHLKLQA-FSAAIESCNKALELDSNNEKGLSRRG----------------------EAHLAVNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHCC
Confidence            9999985 99999999999999999999999999                      899999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 013821          355 GDGEIMSQYAKLVWELHHDHDKA-LCYFERAVQA  387 (436)
Q Consensus       355 ~~~~~~~~la~~~~~~g~d~~eA-~~~~~~al~~  387 (436)
                      ++..++..++.++..+|+ +++| ...|++++..
T Consensus       262 ~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRR-QLAREKKLYANMFER  294 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            999999999999999999 9988 5677777654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.72  E-value=2.5e-17  Score=161.83  Aligned_cols=211  Identities=11%  Similarity=0.068  Sum_probs=179.4

Q ss_pred             cCCCChHHHHHhhcCCCCC-----CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVP-----GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-------HPLLLRNYAQLLQK  244 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~~~~~la~~~~~  244 (436)
                      .+++.|..++..++.+...     ..+.++..+|.++...|++++|+.+++++++..+.       ...++..+|.+|..
T Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  196 (383)
T 3ulq_A          117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD  196 (383)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence            4667889999999887331     24578999999999999999999999999997443       34689999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHH
Q 013821          245 KGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAAL-----AA-PQDSNILAAYACFLW  312 (436)
Q Consensus       245 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~  312 (436)
                      .|++++|+.+|++++++.+..      ..++.++|.++...++ +++|+.+|+++++     .+ |....++..+|.++.
T Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            999999999999999885543      3589999999999975 9999999999999     46 778899999999999


Q ss_pred             HccCchHHHHHHHHHHHH-----------------hHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821          313 EMEDDGEDDKAQEEHIQV-----------------LPIQSKGD---LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH  372 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  372 (436)
                      ..|++++|...+++++..                 .++...|+   +++|+.++++. ...|....++..+|.++..+|+
T Consensus       276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~  354 (383)
T 3ulq_A          276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKN  354 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999977764                 56677788   78888888776 3334456789999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 013821          373 DHDKALCYFERAVQASPA  390 (436)
Q Consensus       373 d~~eA~~~~~~al~~~p~  390 (436)
                       +++|+.+|++++++...
T Consensus       355 -~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          355 -FQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             -HHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             99999999999987543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=5.5e-17  Score=154.95  Aligned_cols=162  Identities=15%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 013821          239 AQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--D----SNILAA  306 (436)
Q Consensus       239 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~----~~~~~~  306 (436)
                      |.+|...|++++|+.+|.+++++.+..      ..++..+|.+|...++ +++|+.+|++++++.+.  +    ..++.+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  121 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDR  121 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666666666666666666654321      3455666666655553 66666666666665322  1    233444


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY  380 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~  380 (436)
                      +|                      .+|.. |++++|+.+|++++++.+..      ..++.++|.++..+|+ +++|+.+
T Consensus       122 lg----------------------~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~  177 (307)
T 2ifu_A          122 AG----------------------KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAAS  177 (307)
T ss_dssp             HH----------------------HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HH----------------------HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            44                      55555 66666666666666665432      3456666666666666 6666666


Q ss_pred             HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      |++++.+.|.+      ..++..++.++..+|++++|+.+|++++ +.|.+.
T Consensus       178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            66666654432      1345556666666666666666666666 666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.71  E-value=1e-17  Score=156.37  Aligned_cols=190  Identities=10%  Similarity=-0.089  Sum_probs=169.7

Q ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------
Q 013821          210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNY-------AQLLQKKGDLYRAEDYYNHATMADPGDG----------------  266 (436)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------  266 (436)
                      .-+++.+|.+.|.+++..+|+..++|..+       +.++...+++.+++..+++++.+.|...                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            35999999999999999999999999999       8999999999999999999999877543                


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          267 -----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       267 -----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                           .+...++.++...++ |++|.+.|+.++...|++. +++.++                      .++.+.++|++
T Consensus        98 v~~r~dl~LayA~~L~~~g~-y~eA~~~l~~~~~~~p~~~-~~~~~a----------------------~l~~~~~r~~d  153 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGN-YADAMEALEAAPVAGSEHL-VAWMKA----------------------VVYGAAERWTD  153 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTC-HHHHHHHHTSSCCTTCHHH-HHHHHH----------------------HHHHHTTCHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCchH-HHHHHH----------------------HHHHHcCCHHH
Confidence                 445568888888875 9999999999999999888 999999                      88999999999


Q ss_pred             HHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCChHHHHHHHH
Q 013821          342 AEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PA-DSHVLAAYACFLWETEEDEDDSKSSD  416 (436)
Q Consensus       342 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~~  416 (436)
                      |+.+|++++...+..  ..+++++|.++..+|+ +++|+.+|++++...  |. ...+++.+|.++.++|+.++|...|+
T Consensus       154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999887653221  4589999999999999 999999999998544  55 56799999999999999999999999


Q ss_pred             HHHhhCCC
Q 013821          417 QFQQVAPI  424 (436)
Q Consensus       417 ~al~l~p~  424 (436)
                      +++..+|.
T Consensus       233 ~a~a~~P~  240 (282)
T 4f3v_A          233 WLQTTHPE  240 (282)
T ss_dssp             HHHHHSCC
T ss_pred             HHHhcCCc
Confidence            99999998

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.71  E-value=1.9e-17  Score=156.32  Aligned_cols=197  Identities=15%  Similarity=0.068  Sum_probs=162.4

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV  276 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  276 (436)
                      .+..+..+|..+...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                      ...++ +++|+..|+++++++|++...+....                      ....   +..++..+........|.+
T Consensus        83 ~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~----------------------~~~~---~~~~~~~~~~~~~~~~~~~  136 (281)
T 2c2l_A           83 LEMES-YDEAIANLQRAYSLAKEQRLNFGDDI----------------------PSAL---RIAKKKRWNSIEERRIHQE  136 (281)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHHHHTTCCCCSHH----------------------HHHH---HHHHHHHHHHHHHTCCCCC
T ss_pred             HHcCC-HHHHHHHHHHHHHhCccchhhHHHHH----------------------HHHH---HHHHHHHHHHHHHHHHhhh
Confidence            99885 99999999999999987643222111                      1111   1222233333444567778


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhC
Q 013821          357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l~  422 (436)
                      ..+...++.++  .|+ +++|++.++++++.+|++......++.++.+. +.+++|.+.|.++.+..
T Consensus       137 ~~i~~~l~~l~--~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          137 SELHSYLTRLI--AAE-RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             CHHHHHHHHHH--HHH-HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHHHH--HHH-HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            88888888765  577 99999999999999999888888888877776 67889999999887643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.71  E-value=1.8e-15  Score=145.53  Aligned_cols=223  Identities=9%  Similarity=0.035  Sum_probs=172.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK-G-DLYRAEDY  254 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~-g-~~~~A~~~  254 (436)
                      ...++..++..++.+++ .+..+|...+.++...| .+++++.++++++..+|++..+|..++.++... + ++++++++
T Consensus        69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            34457777788888888 78888888888888877 488888888888888888888888888888776 6 77888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013821          255 YNHATMADPGDGESWMQYAKLVWELHRDQH--------RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE  326 (436)
Q Consensus       255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  326 (436)
                      +.++++.+|.+..+|...+.++...++ ++        +++++++++++.+|.|..+|..++                  
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~------------------  208 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW------------------  208 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH------------------
Confidence            888888888888888888888777765 55        788888888888888888888888                  


Q ss_pred             HHHHhHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------------------HHHHHHH
Q 013821          327 HIQVLPIQSKGD-------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD-------------------HDKALCY  380 (436)
Q Consensus       327 ~~~~~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d-------------------~~eA~~~  380 (436)
                          .++...++       ++++++++++++..+|++..+|+++..++...|+.                   ..+-...
T Consensus       209 ----~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (349)
T 3q7a_A          209 ----YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF  284 (349)
T ss_dssp             ----HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred             ----HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence                55555554       78999999999999999999999999999888773                   1223333


Q ss_pred             HHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCC
Q 013821          381 FERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQ-QVAPI  424 (436)
Q Consensus       381 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~l~p~  424 (436)
                      +...+...      +..+.++..++.+|.+.|+.++|++.++... +.+|.
T Consensus       285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi  335 (349)
T 3q7a_A          285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM  335 (349)
T ss_dssp             -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence            33333222      4677899999999999999999999999976 55664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=3.2e-17  Score=169.54  Aligned_cols=189  Identities=14%  Similarity=0.058  Sum_probs=172.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 013821          213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-  281 (436)
Q Consensus       213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-  281 (436)
                      ..++|++.+++++..+|++..+|..++.++...|+          +++|+++++++++.+|++..+|+..+.++...+. 
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34788999999999999999999999999999998          9999999999999999999999999999988872 


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHhCCCCHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILANPGDGEIM  360 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~  360 (436)
                      ++++|+++++++++.+|.+..+|...+                      .++...| .++++++++.++++.+|.+..+|
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~----------------------~~l~~l~~~~~~el~~~~~~I~~~p~n~saW  181 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHH----------------------HHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence            379999999999999999999999999                      7888888 89999999999999999999999


Q ss_pred             HHHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH------------HHHH
Q 013821          361 SQYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED------------DSKS  414 (436)
Q Consensus       361 ~~la~~~~~~--------------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e------------A~~~  414 (436)
                      .+++.++..+              +. +++|++++.+|+.++|++..+|..++.++.+.+++++            |+..
T Consensus       182 ~~r~~ll~~l~~~~~~~~~~~~~~~~-~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  260 (567)
T 1dce_A          182 HYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVC  260 (567)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHH-HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEE
T ss_pred             HHHHHHHHhhcccccccccccccHHH-HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEE
Confidence            9999999986              55 8999999999999999999999999999999998766            4455


Q ss_pred             HHHHHhhCCC
Q 013821          415 SDQFQQVAPI  424 (436)
Q Consensus       415 ~~~al~l~p~  424 (436)
                      |.+++.+.|.
T Consensus       261 f~~~i~~~~~  270 (567)
T 1dce_A          261 FSRPLTVGSR  270 (567)
T ss_dssp             EEEEECTTBT
T ss_pred             eccceecccc
Confidence            6666665554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=2.7e-15  Score=122.51  Aligned_cols=133  Identities=22%  Similarity=0.417  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE  313 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  313 (436)
                      +++.+|.++...|++++|+.+++++++.+|.+..++..+|.++...++ +++|+.+|++++...|.+..++..++     
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~-----   76 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLG-----   76 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCchHHHHHHH-----
Confidence            345555555555555555555555555555555555555555555442 55555555555555555555555555     


Q ss_pred             ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821          314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~  390 (436)
                                       .++...|++++|+.++++++...|.+..++..+|.++...|+ +++|+.++++++..+|+
T Consensus        77 -----------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           77 -----------------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPR  135 (136)
T ss_dssp             -----------------HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTT
T ss_pred             -----------------HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCC
Confidence                             455555555555555555555555555555555555555555 55555555555555543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.70  E-value=1.2e-15  Score=148.93  Aligned_cols=224  Identities=16%  Similarity=0.081  Sum_probs=183.4

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE  267 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  267 (436)
                      ..+..+|.++...|++++|+.++++++...|...     .++..+|.++...|++++|+.++++++.+.+..      ..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3456678888899999999999999999887553     367899999999999999999999999876543      23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------  330 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------  330 (436)
                      ++..+|.++...|+ +++|+.+|++++++.        |....++.++|.++...|++++|...+.+.+..         
T Consensus        95 ~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           95 SLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            47789999988875 999999999999875        334567788999999999999999999876653         


Q ss_pred             --------hHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----
Q 013821          331 --------LPIQSKGDLEGAEEYFSRAILANPG--DGEIMS-----QYAKLVWELHHDHDKALCYFERAVQASPAD----  391 (436)
Q Consensus       331 --------~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~g~d~~eA~~~~~~al~~~p~~----  391 (436)
                              .++...|++++|+.++++++.+.+.  ....+.     .++.++...|+ +++|..++++++...|..    
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~  252 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFL  252 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCCCCcchhh
Confidence                    6788899999999999999987432  211221     34455778999 999999999998877653    


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      ...+..++.++...|++++|+..+++++...+.
T Consensus       253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  285 (373)
T 1hz4_A          253 QGQWRNIARAQILLGEFEPAEIVLEELNENARS  285 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            345788999999999999999999999887543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.70  E-value=5.8e-17  Score=137.76  Aligned_cols=118  Identities=13%  Similarity=0.012  Sum_probs=77.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP  298 (436)
Q Consensus       219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p  298 (436)
                      ..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHST
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence            345666666666666666677777777777777666666666666666666666666666653 6666666666666666


Q ss_pred             CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI  359 (436)
Q Consensus       299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  359 (436)
                      +++.+++.+|                      .++...|++++|+.+|+++++++|+++..
T Consensus        87 ~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           87 XEPRFPFHAA----------------------ECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCchHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            6666666666                      66666666666666666666666655443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.69  E-value=2.4e-15  Score=122.85  Aligned_cols=135  Identities=23%  Similarity=0.367  Sum_probs=128.3

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      .+|..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                      .++ +++|+..++++++..|.+..++..++                      .++...|++++|+.+|++++..+|.+
T Consensus        82 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           82 QGD-YDEAIEYYQKALELDPRSAEAWYNLG----------------------NAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hcC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHHccHHHHHHHHHHHHccCCCC
Confidence            875 99999999999999999999999999                      88889999999999999999998863

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=9.2e-17  Score=136.53  Aligned_cols=120  Identities=11%  Similarity=-0.015  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      +...|++++.++|.+..+++.+|.+++..++ +++|+..|++++..+|.++.+|+.+|                      
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------   62 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYDSRFFLGLG----------------------   62 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCcccHHHHHHHH----------------------
Confidence            3456788888888888899999988888875 99999999999999999999999888                      


Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV  394 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~  394 (436)
                      .++...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+..|++++++.|+++..
T Consensus        63 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcc
Confidence            888888999999999999999999999999999999999988 999999999999988877644

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.8e-15  Score=136.44  Aligned_cols=186  Identities=17%  Similarity=0.089  Sum_probs=159.0

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG----DLYRAEDYYN  256 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g----~~~~A~~~~~  256 (436)
                      ++..++.++...   +++.++..+|.++...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            455666666654   67889999999999999999999999999886  589999999999998 7    9999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          257 HATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       257 ~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      ++++  +.++.+++.+|.+|..    . +|+++|+.+|+++++..+  .++.+++++|                      
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg----------------------  132 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLG----------------------  132 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHH----------------------
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHH----------------------
Confidence            9964  5799999999999876    4 469999999999999988  4599999999                      


Q ss_pred             hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          331 LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-----HDHDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       331 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~d~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      .+|..    .+++++|+.+|+++++. +.++.++++||.+|..-.     .|+++|+.+|+++++...  ..+...++.
T Consensus       133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~  208 (212)
T 3rjv_A          133 LIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR  208 (212)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            77777    78999999999999998 677889999999998642     249999999999999854  455555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.67  E-value=1.2e-15  Score=145.67  Aligned_cols=187  Identities=10%  Similarity=0.063  Sum_probs=153.3

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--D----GE  267 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~  267 (436)
                      .+...|.++...|++++|+.+|.+++++.+..      ..++..+|.+|..+|++++|+.+|++++++.+.  +    ..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            44555788999999999999999999986532      468999999999999999999999999998543  2    46


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      ++..+|.+|.. + ++++|+.+|++++++.+..      ..++.++|                      .++..+|++++
T Consensus       118 ~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~  173 (307)
T 2ifu_A          118 ALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKAS----------------------RLLVRQQKFDE  173 (307)
T ss_dssp             HHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred             HHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH----------------------HHHHHcCCHHH
Confidence            88899999877 5 6999999999999987653      45677777                      88999999999


Q ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHH
Q 013821          342 AEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWETEEDED  410 (436)
Q Consensus       342 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~e  410 (436)
                      |+.+|++++.+.|.+      ..++..+|.++..+|+ +++|+.+|++++ ++|...     ..+..++..+ ..|+.+.
T Consensus       174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~  250 (307)
T 2ifu_A          174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ  250 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence            999999999986643      3478889999999999 999999999999 999754     2344555544 5677655


Q ss_pred             HHH
Q 013821          411 DSK  413 (436)
Q Consensus       411 A~~  413 (436)
                      +..
T Consensus       251 ~~~  253 (307)
T 2ifu_A          251 LLR  253 (307)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.67  E-value=5.3e-15  Score=149.05  Aligned_cols=189  Identities=15%  Similarity=0.120  Sum_probs=123.4

Q ss_pred             hhhhHHhhhhhCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          200 AGEVVDLIMPNFD---DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK----GDLYRAEDYYNHATMADPGDGESWMQY  272 (436)
Q Consensus       200 ~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l  272 (436)
                      ++..+|.++...|   ++++|+.+|+++++..|..+..++.+|.+|...    +++++|+.+|+++.   |.++.+++.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            5555555555555   555555555555555555555555555555433    45555555555554   5555555555


Q ss_pred             HHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-----CHHHHHHH
Q 013821          273 AKLVW--ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-----DLEGAEEY  345 (436)
Q Consensus       273 a~~~~--~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-----~~~~A~~~  345 (436)
                      |.+|+  ...+++++|+.+|+++++.  +++.+++++|                      .+|. .|     ++++|+.+
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg----------------------~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLG----------------------KLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHH----------------------HHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH----------------------HHHH-cCCCCCCCHHHHHHH
Confidence            55533  2223455555555555433  2455555555                      5555 45     99999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHH
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQ  417 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~  417 (436)
                      |+++.   +.++.++++||.+|..    ..+ +++|+.+|+++.+  +.++.+.+++|.+|..    ..++.+|..+|++
T Consensus       310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~  383 (452)
T 3e4b_A          310 FEKAV---GREVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL  383 (452)
T ss_dssp             HHTTT---TTCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred             HHHHh---CCCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            99998   8899999999988876    224 9999999999876  4567889999999885    4588999999999


Q ss_pred             HHhhC
Q 013821          418 FQQVA  422 (436)
Q Consensus       418 al~l~  422 (436)
                      +.+..
T Consensus       384 A~~~g  388 (452)
T 3e4b_A          384 AKAQD  388 (452)
T ss_dssp             HHTTC
T ss_pred             HHHCC
Confidence            88764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.67  E-value=3e-16  Score=132.01  Aligned_cols=123  Identities=17%  Similarity=0.046  Sum_probs=77.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP  298 (436)
Q Consensus       219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p  298 (436)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence            345556666666666666666666666666666666666666666666666666666666653 6666666666666666


Q ss_pred             CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA  364 (436)
Q Consensus       299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  364 (436)
                      +++.+++.+|                      .++...|++++|+.+|+++++++|+++.......
T Consensus        84 ~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           84 NEPRFPFHAA----------------------ECHLQLGDLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             TCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             CCcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            6666666666                      6666666666666666666666666554443333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.66  E-value=1.8e-16  Score=141.03  Aligned_cols=182  Identities=12%  Similarity=0.020  Sum_probs=117.8

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      .+.+......|++++|.+.++......+..+..+..+|.+++..|++++|+..|++++.+.|.++.....  .    ...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~----~~~   81 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I----LLD   81 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H----HHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h----HHH
Confidence            3444455556666666666666666555566666667777777777777777777666666654321100  0    000


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                       ..       +.+     ...++.++|                      .++...|++++|+.+|+++++++|.+..+++
T Consensus        82 -~~-------~~~-----~~~~~~~la----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  126 (198)
T 2fbn_A           82 -KK-------KNI-----EISCNLNLA----------------------TCYNKNKDYPKAIDHASKVLKIDKNNVKALY  126 (198)
T ss_dssp             -HH-------HHH-----HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             -HH-------HHH-----HHHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHHhCcccHHHHH
Confidence             00       000     136777888                      8889999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhCCCC
Q 013821          362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSSDQFQQVAPIR  425 (436)
Q Consensus       362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~p~~  425 (436)
                      .+|.++..+|+ +++|+.+|+++++++|++..++..++.++..+++..++. ..|.+.+.....+
T Consensus       127 ~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~  190 (198)
T 2fbn_A          127 KLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLY  190 (198)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            99999999999 999999999999999999999999999999999888887 5566666554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.65  E-value=1e-15  Score=133.24  Aligned_cols=131  Identities=10%  Similarity=0.064  Sum_probs=113.3

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL-VWELHRDQ--  283 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~d~--  283 (436)
                      -+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...+ ++  
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~   97 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMT   97 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCC
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-Ccch
Confidence            345569999999999999999999999999999999999999999999999999999999999999999 55655 47  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM  360 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  360 (436)
                      ++|+.+|+++++.+|++..+++.+|                      .++...|++++|+.+|+++++.+|.+....
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLA----------------------SDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999999999999999999999                      888889999999999999999999875544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.65  E-value=5e-16  Score=130.61  Aligned_cols=125  Identities=16%  Similarity=0.015  Sum_probs=102.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821          253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP  332 (436)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  332 (436)
                      ..|++++.++|.+...++.+|.+++..++ +++|+..|++++..+|+++.+|+.+|                      .+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~~   61 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLDHYDARYFLGLG----------------------AC   61 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HH
Confidence            45677788888888888888888888874 89999999999999998888888888                      88


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      +...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++........+
T Consensus        62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            8888888999999999999999888888889999888888 8999999999888888776554444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=5.3e-15  Score=121.18  Aligned_cols=113  Identities=18%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      +..+..+|..+...|++++|+..|+++++++|.++.+|..+|.++...++ +++|+..|+++++++|++..+++.+|   
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg---   79 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKA---   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHH---
Confidence            34455555555555555555555555555555555555555555544442 55555555555555555555555555   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN------PGDGEIMSQYAKLV  367 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~  367 (436)
                                         .++...|++++|+.+|+++++++      |.+..++..++.+.
T Consensus        80 -------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           80 -------------------TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             -------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence                               44444555555555555555555      44444444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=1e-14  Score=130.32  Aligned_cols=133  Identities=16%  Similarity=0.090  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ..++.+|.++...|++++|+..|++++  +| ++.+++.+|.++...++ +++|+.+|+++++++|++..++..+|    
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~lg----   78 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRG----   78 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHH----
Confidence            346777888888888888888888874  33 67788888888877764 88888888888888888888888888    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCHHH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG----------------EIMSQYAKLVWELHHDHDK  376 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~d~~e  376 (436)
                                        .++...|++++|+.+|+++++..|.+.                .+++++|.++..+|+ +++
T Consensus        79 ------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~  139 (213)
T 1hh8_A           79 ------------------MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKK  139 (213)
T ss_dssp             ------------------HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHH
T ss_pred             ------------------HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHH
Confidence                              777888888888888888888777766                999999999999999 999


Q ss_pred             HHHHHHHHHHhCCCCH
Q 013821          377 ALCYFERAVQASPADS  392 (436)
Q Consensus       377 A~~~~~~al~~~p~~~  392 (436)
                      |+..|++++++.|++.
T Consensus       140 A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          140 AEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHHcCcccc
Confidence            9999999999999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.64  E-value=2e-14  Score=122.63  Aligned_cols=129  Identities=16%  Similarity=0.089  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..+|    
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~a----   88 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA----   88 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHH----
Confidence            4455555555555555555555555555555555555555555554442 55555555555555555555555555    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAV  385 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~eA~~~~~~al  385 (436)
                                        .++...|++++|+.+|+++++++|.+..++..++.+  +...|+ +++|+..+.++.
T Consensus        89 ------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~  144 (166)
T 1a17_A           89 ------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKR  144 (166)
T ss_dssp             ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             ------------------HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchH
Confidence                              444555555555555555555555555544333332  444455 555555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.64  E-value=5.8e-16  Score=137.65  Aligned_cols=110  Identities=16%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----------------LLLRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      +..+..+|..++..|++++|+.+|++++...|.++                .++.++|.++...|++++|+.++++++++
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            36788999999999999999999999999998876                66666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +|.+..+++.+|.++...++ +++|+.+|+++++++|++..++..++
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            66666666666666666553 66666666666666666666666666

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=8.7e-15  Score=130.83  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=123.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..+..+|.++...|++++|+..|++++  +| ++.++..+|.++...|++++|+.+|++++..+|.++.+++.+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            457789999999999999999999996  44 789999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821          279 LHRDQHRALTYFERAALAAPQDS----------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                      .++ +++|+.+|+++++..|.+.                .+++.+|                      .++...|++++|
T Consensus        84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A  140 (213)
T 1hh8_A           84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA----------------------FMYAKKEEWKKA  140 (213)
T ss_dssp             TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH----------------------HHHHHTTCHHHH
T ss_pred             ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH----------------------HHHHHccCHHHH
Confidence            875 9999999999999888876                8999999                      889999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 013821          343 EEYFSRAILANPGD  356 (436)
Q Consensus       343 ~~~~~~al~~~p~~  356 (436)
                      +.+|+++++++|++
T Consensus       141 ~~~~~~al~~~p~~  154 (213)
T 1hh8_A          141 EEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHcCccc
Confidence            99999999999986

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.63  E-value=2.2e-14  Score=135.65  Aligned_cols=170  Identities=12%  Similarity=0.018  Sum_probs=142.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--  300 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--  300 (436)
                      |.....+...+..+...|++++|++.+.++++..+...      ..++.+|.++...+ ++++|+.+|+++++..+..  
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSSC
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCc
Confidence            44456677888899999999999999999999887754      33556776666655 5999999999999876543  


Q ss_pred             ----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHH
Q 013821          301 ----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI---LANPGDG----EIMSQYAKLVWE  369 (436)
Q Consensus       301 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~  369 (436)
                          ..++..+|                      .+|...|++++|+.+|++++   +..|++.    .+++++|.++..
T Consensus       151 ~~~~~~~~~~lg----------------------~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          151 VYQNLYIENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             TTHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence                55777888                      89999999999999999999   4566643    689999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhhC
Q 013821          370 LHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEEDEDD-SKSSDQFQQVA  422 (436)
Q Consensus       370 ~g~d~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l~  422 (436)
                      +|+ +++|+.++++++.+.+.      ...++.++|.++..+|++++| ..+|++++.+.
T Consensus       209 ~~~-y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          209 DSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTC-HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             Hhh-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            999 99999999999987643      268899999999999999999 78899999875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1e-14  Score=119.43  Aligned_cols=118  Identities=14%  Similarity=0.023  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821          264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE  343 (436)
Q Consensus       264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~  343 (436)
                      ..+..+..+|..++..++ +++|+..|+++++++|+++.++.++|                      .++...|++++|+
T Consensus         2 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a----------------------~~~~~~~~~~~A~   58 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRA----------------------AALAKLMSFPEAI   58 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHhcCHHHHH
Confidence            456778889999888874 99999999999999999999999999                      8888899999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Q 013821          344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWET  405 (436)
Q Consensus       344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~  405 (436)
                      ..|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++      |.+..++..++.+...+
T Consensus        59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           59 ADCNKAIEKDPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999 999999999999999      88888888888776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=2.2e-14  Score=122.34  Aligned_cols=133  Identities=17%  Similarity=0.111  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY  345 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~  345 (436)
                      +..+..+|.+++..+ ++++|+..|+++++.+|.+..++..+|                      .++...|++++|+.+
T Consensus        13 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~   69 (166)
T 1a17_A           13 AEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRS----------------------LAYLRTECYGYALGD   69 (166)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCCHHHHHHH
Confidence            567889999999887 499999999999999999999999999                      888999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHCCChHHHHHHHHHHHhhC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF--LWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~l~  422 (436)
                      |+++++.+|.++.+++.+|.++..+|+ +++|+.+|+++++++|.+..++..++.+  +...|++++|+..+.++..+.
T Consensus        70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           70 ATRAIELDKKYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            999999999999999999999999999 9999999999999999999888555544  888999999999999887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.63  E-value=3.2e-15  Score=146.62  Aligned_cols=168  Identities=13%  Similarity=0.009  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADP------GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------  300 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------  300 (436)
                      ..++.+|..+...|++++|+.+|++++.+.+      ..+.+++.+|.++...++ +++|+.++++++++.+..      
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-THVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhCCCchhh
Confidence            3677899999999999999999999998732      246789999999999985 999999999999986542      


Q ss_pred             -HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCC
Q 013821          301 -SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHD  373 (436)
Q Consensus       301 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d  373 (436)
                       ..++..+|                      .++...|++++|+.+|++++++.+      ....++.++|.++..+|+ 
T Consensus       181 ~~~~~~~lg----------------------~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-  237 (378)
T 3q15_A          181 TIQSLFVIA----------------------GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-  237 (378)
T ss_dssp             HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-
Confidence             33556666                      888888999999999999988743      124578889999999998 


Q ss_pred             HHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          374 HDKALCYFERAVQ-----ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       374 ~~eA~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      +++|+.+|++++.     .+|....++..+|.++..+|++++|+.++++++.+.+.
T Consensus       238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999998     67777788899999999999999999999999988644

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=4.6e-15  Score=129.06  Aligned_cols=130  Identities=9%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      +...|++++|+..++++++.+|.++.+|+.+|.++...++ +++|+.+|+++++++|++..++..+|             
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la-------------   85 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLRGENAELYAALA-------------   85 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCSCHHHHHHHH-------------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH-------------
Confidence            3567889999999999999999999999999999988874 99999999999999999999999999             


Q ss_pred             HHHHHHHHHhH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          322 KAQEEHIQVLP-IQSKGDL--EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL  395 (436)
Q Consensus       322 ~~~~~~~~~~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~  395 (436)
                               .+ +...|++  ++|+.+|+++++.+|.+..+++.+|.++..+|+ +++|+..|+++++++|++....
T Consensus        86 ---------~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           86 ---------TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             ---------HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTSCHH
T ss_pred             ---------HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCccHH
Confidence                     77 7788998  999999999999999999999999999999999 9999999999999999876443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.62  E-value=2.6e-14  Score=143.98  Aligned_cols=194  Identities=15%  Similarity=0.126  Sum_probs=157.0

Q ss_pred             chhhhhhHHhhhhhCCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSA----EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG---DLYRAEDYYNHATMADPGDGESW  269 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~----~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~  269 (436)
                      .+.++..+|.++...+.++    ++..+++.+...+|   .+++.+|.+|...|   ++++|+.+|+++.+..+.....+
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~  216 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV  216 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence            3457778888888777444    44444555544444   38899999999999   89999999999999999999888


Q ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821          270 MQYAKLVWELH---RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF  346 (436)
Q Consensus       270 ~~la~~~~~~~---~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~  346 (436)
                      +.+|.+|....   +++++|+.+|+++.   |+++.+++++|.++...                   ...+++++|+.+|
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~-------------------~~~~d~~~A~~~~  274 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF-------------------PELGDVEQMMKYL  274 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS-------------------GGGCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHH
Confidence            89998875431   46899999999988   88899999999432210                   3589999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q 013821          347 SRAILANPGDGEIMSQYAKLVWELH----HDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQF  418 (436)
Q Consensus       347 ~~al~~~p~~~~~~~~la~~~~~~g----~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~a  418 (436)
                      +++.+.  .++.+++++|.+|. .|    .|+++|+.+|+++.   +.++.+++++|.+|..    ..++++|+.+|+++
T Consensus       275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          275 DNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            999865  48999999999998 56    13999999999998   8999999999999887    44999999999999


Q ss_pred             Hhh
Q 013821          419 QQV  421 (436)
Q Consensus       419 l~l  421 (436)
                      .+.
T Consensus       349 a~~  351 (452)
T 3e4b_A          349 ARN  351 (452)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            885

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.61  E-value=1e-16  Score=149.50  Aligned_cols=197  Identities=12%  Similarity=-0.070  Sum_probs=172.4

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhH-------HhhhhhCCCHHHHHHHHHHHHHhCCCCH------------------
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVV-------DLIMPNFDDSAEAEEYYKRMIDEYPCHP------------------  232 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~P~~~------------------  232 (436)
                      ++..+...|.++..+++ +...+|.++       +.++...+++.+++..+++.+.+.|...                  
T Consensus        21 d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~   99 (282)
T 4f3v_A           21 SEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT   99 (282)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred             CHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence            55578889999999999 899999999       8999999999999999999999877543                  


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 013821          233 ---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAY  307 (436)
Q Consensus       233 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~l  307 (436)
                         ++...++.++...|+|++|.+.|..++...|++. +.+.+|.+++..++ +++|+.+|++++...+..  ..+++.+
T Consensus       100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A          100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER-WTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC-HHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC-HHHHHHHHHHhhccCCcccHHHHHHHH
Confidence               4556689999999999999999999999999988 99999999999885 999999999886653221  3578889


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PG-DGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      |                      .++..+|++++|+.+|++++...  |. ..++++++|.++.++|+ .++|...|+++
T Consensus       178 G----------------------~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a  234 (282)
T 4f3v_A          178 G----------------------VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWL  234 (282)
T ss_dssp             H----------------------HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred             H----------------------HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence            9                      89999999999999999998654  55 66899999999999999 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q 013821          385 VQASPADSHVLAAYACF  401 (436)
Q Consensus       385 l~~~p~~~~~~~~la~~  401 (436)
                      +..+|+ ..++..|...
T Consensus       235 ~a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          235 QTTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHHSCC-HHHHHHHHCT
T ss_pred             HhcCCc-HHHHHHHhCC
Confidence            999999 8877776543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.61  E-value=1.2e-14  Score=125.02  Aligned_cols=111  Identities=18%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      ++..++.+|.++...|++++|+.+|+++++++|.++.+|+.+|.++...++ +++|+.+|+++++++|++..+++.+|  
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg--   86 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSRLG--   86 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHH--
Confidence            345555556666666666666666666666555555555555555555543 55555555555555555555555555  


Q ss_pred             HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA  364 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  364 (436)
                                          .++..+|++++|+.+|+++++++|++..+|+.++
T Consensus        87 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           87 --------------------LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             --------------------HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             --------------------HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence                                5555555555555555555555555555444444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.61  E-value=5.1e-14  Score=133.14  Aligned_cols=165  Identities=12%  Similarity=-0.034  Sum_probs=141.3

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE  267 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  267 (436)
                      .+...+..+...|++++|+..++++++..+...      ..++.+|.++...|++++|+.+|++++...+..      ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            455677788999999999999999999887654      346778899999999999999999999876543      66


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAA---LAAPQDS----NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      ++..+|.+|...++ +++|+.+|++++   +..|++.    .+++++|                      .+|..+|+++
T Consensus       157 ~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~  213 (293)
T 2qfc_A          157 IENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYE  213 (293)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHH----------------------HHHHHHhhHH
Confidence            89999999999875 999999999999   5566643    5778888                      8999999999


Q ss_pred             HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 013821          341 GAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKA-LCYFERAVQAS  388 (436)
Q Consensus       341 ~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~eA-~~~~~~al~~~  388 (436)
                      +|+.+|++++++.+.      ...+++++|.++..+|+ +++| ..+|++++.+.
T Consensus       214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence            999999999988543      27899999999999999 9999 88899998753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=2.1e-15  Score=142.19  Aligned_cols=168  Identities=11%  Similarity=-0.004  Sum_probs=141.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      |.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...++ +++|+..|+++++++|++..+++.+|
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999985 99999999999999999999999999


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                                            .++..+|++++|+..|+++++++|++...+.........    ..++..+........
T Consensus        80 ----------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  133 (281)
T 2c2l_A           80 ----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----IAKKKRWNSIEERRI  133 (281)
T ss_dssp             ----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----HHHHHHHHHHHHTCC
T ss_pred             ----------------------HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence                                  889999999999999999999998764333322222222    233344444444567


Q ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      |.+..+...++.++  .|++++|++.|++++++.|..
T Consensus       134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A          134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH
T ss_pred             hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccch
Confidence            78888888887765  689999999999999998863

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=1.1e-14  Score=120.09  Aligned_cols=116  Identities=16%  Similarity=0.193  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      +.++..+|.+++..|+|++|+.+|+++++++|.++.+|.++|.+|..+++ +++|+..|+++++++|++...+..++.++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            34566667777777777777777777777777777777777777666654 77777777777777666554444444444


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA  364 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  364 (436)
                      ..+|               .++..+|++++|+++|++++...|+ ++....+.
T Consensus        87 ~~lg---------------~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           87 SRAG---------------NAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHH---------------HHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHH---------------HHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            4444               8888899999999999999998885 55554443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=1.8e-14  Score=117.15  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC  309 (436)
Q Consensus       230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~  309 (436)
                      .+...+..+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+++++++..|++..++..+| 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~-   87 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN-YAGAVQDCERAICIDPAYSKAYGRMG-   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhcCccCHHHHHHHH-
Confidence            3445556666666666666666666666666666666666666655555543 55666666655555555555555555 


Q ss_pred             HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821          310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH  372 (436)
Q Consensus       310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  372 (436)
                                           .++...|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus        88 ---------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           88 ---------------------LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             ---------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             ---------------------HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence                                 555555555666666666665555555555555555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.60  E-value=1.6e-14  Score=118.29  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      ..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..+|   
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la---   91 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKGYTRKA---   91 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCchHHHHHHH---
Confidence            34444444444444444444444444444444444444444444444432 44444444444444444444444444   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL  370 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  370 (436)
                                         .++...|++++|+.+|+++++.+|.+..++..++.++..+
T Consensus        92 -------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           92 -------------------AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             -------------------HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence                               4444444444444444444444444444444444444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.59  E-value=1.1e-15  Score=154.39  Aligned_cols=152  Identities=13%  Similarity=0.093  Sum_probs=130.2

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYA  273 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la  273 (436)
                      ...+++++|+..|+++++..|..+..+..+|.+++..|+|++|+..|+++++++|.+               ..+|+++|
T Consensus       245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999999999999999999999998               68888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013821          274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN  353 (436)
Q Consensus       274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  353 (436)
                      .++..+++ +++|+.+|+++++++|++..+++.+|                      .+|..+|++++|+.+|+++++++
T Consensus       325 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~~g----------------------~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          325 MCYLKLRE-YTKAVECCDKALGLDSANEKGLYRRG----------------------EAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHhC
Confidence            88888875 99999999999999999999999988                      88888889999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 013821          354 PGDGEIMSQYAKLVWELHHDHDKALC-YFERA  384 (436)
Q Consensus       354 p~~~~~~~~la~~~~~~g~d~~eA~~-~~~~a  384 (436)
                      |++..++..++.++..+++ +++|.. .|.+.
T Consensus       382 P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~  412 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKE-HNERDRRIYANM  412 (457)
T ss_dssp             ----CHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            9988899999999988888 777764 34433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.59  E-value=3.1e-14  Score=115.77  Aligned_cols=125  Identities=16%  Similarity=0.255  Sum_probs=116.9

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      .+|.+..++..+|.++...+ ++++|+..|++++...|++..++..+|                      .++...|+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~   63 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRA----------------------AAYSKLGNYA   63 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred             cchhhhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHhhchH
Confidence            34556788999999999887 499999999999999999999999999                      8888999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821          341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE  409 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  409 (436)
                      +|+.++++++..+|.+..++..+|.++..+|+ +++|+.+|+++++..|++..++..++.++..+|+++
T Consensus        64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999 999999999999999999999999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=7.8e-14  Score=144.15  Aligned_cols=164  Identities=11%  Similarity=0.086  Sum_probs=151.3

Q ss_pred             HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRD---------QHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ...|++ ++|++.+.+++..+|++..+|+..+.++...+.+         +++|+++++++++.+|++..+|...+    
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~----  114 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC----  114 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH----
Confidence            344554 6889999999999999999999999999998754         99999999999999999999999999    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-HDHDKALCYFERAVQASP  389 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~d~~eA~~~~~~al~~~p  389 (436)
                                        +++...+  +++++++++.++++.+|.+..+|.+.+.++..+| . ++++++++.++++.+|
T Consensus       115 ------------------w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~-~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          115 ------------------WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA-PAEELAFTDSLITRNF  175 (567)
T ss_dssp             ------------------HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC-HHHHHHHHHTTTTTTC
T ss_pred             ------------------HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCC
Confidence                              8888888  7899999999999999999999999999999999 6 9999999999999999


Q ss_pred             CCHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHhhCCCChhHH
Q 013821          390 ADSHVLAAYACFLWET--------------EEDEDDSKSSDQFQQVAPIRQGAV  429 (436)
Q Consensus       390 ~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~l~p~~~~~~  429 (436)
                      .+..+|..++.++..+              +.+++|++++.+++.++|+.+.+-
T Consensus       176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW  229 (567)
T 1dce_A          176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW  229 (567)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred             CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999999999885              557999999999999999876643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.59  E-value=5.2e-14  Score=135.33  Aligned_cols=175  Identities=14%  Similarity=0.146  Sum_probs=141.9

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAK  274 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~  274 (436)
                      ....++..+..+....+..++|++++++++..+|++..+|..++.++...| .+++++.++++++..+|++..+|..++.
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            444667777777777777788999999999999998888988888888888 4888888888888888888888888888


Q ss_pred             HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--------HHHHH
Q 013821          275 LVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--------GAEEY  345 (436)
Q Consensus       275 ~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--------~A~~~  345 (436)
                      ++... +.+++++++++.++++.+|.+..+|...+                      .++...|.++        +++++
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~----------------------wvl~~l~~~~~~~~~~~~eELe~  189 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH----------------------WLYSHFSTLGRISEAQWGSELDW  189 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH----------------------HHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccccccchhhHHHHHHH
Confidence            88877 42478888888888888888888888888                      7777777766        88888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCH
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHD------HDKALCYFERAVQASPADS  392 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d------~~eA~~~~~~al~~~p~~~  392 (436)
                      +.++++.+|.|..+|.+.+.++..+++.      ++++++++.+++.++|++.
T Consensus       190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~  242 (349)
T 3q7a_A          190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV  242 (349)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            8888888888888888888888777641      4778888888888888764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.58  E-value=2.5e-14  Score=122.98  Aligned_cols=117  Identities=14%  Similarity=0.124  Sum_probs=107.5

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      .+.++..++.+|.+++..++ +++|+.+|+++++++|++..+++++|                      .++...|++++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~g~~~~   63 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPANPIYLSNRA----------------------AAYSASGQHEK   63 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcCHHHHHHHH----------------------HHHHHccCHHH
Confidence            34467889999999999875 99999999999999999999999999                      88999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL  402 (436)
Q Consensus       342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~  402 (436)
                      |+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..++...+...
T Consensus        64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           64 AAEDAELATVVDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999 99999999999999999988766666543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=2.8e-14  Score=116.85  Aligned_cols=122  Identities=11%  Similarity=0.081  Sum_probs=114.6

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      .|....+++.+|.++...++ +++|+.+|+++++.+|.+..++..+|                      .++...|++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la----------------------~~~~~~~~~~~   68 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGD-YPQAMKHYTEAIKRNPKDAKLYSNRA----------------------ACYTKLLEFQL   68 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTC-SHHHHHHHHHHHTTCTTCHHHHHHHH----------------------HHHTTTTCHHH
T ss_pred             CcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------HHHHHhccHHH
Confidence            45678899999999998875 99999999999999999999999999                      88889999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                      |+.+|+++++.+|.+..+++.+|.++..+|+ +++|+.+|++++..+|.+..++..++.++..+|+
T Consensus        69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999 9999999999999999999999999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.58  E-value=4.1e-14  Score=128.51  Aligned_cols=192  Identities=9%  Similarity=-0.009  Sum_probs=130.3

Q ss_pred             CCCChHHHHHhhcCCCCCC--chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPG--FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAE  252 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~  252 (436)
                      ++++|...+...+...+..  ...++..+|.++...|++++|+..|+++++.+|++.   .+++.+|.++...+..    
T Consensus        19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~----   94 (225)
T 2yhc_A           19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS----   94 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh----
Confidence            5557888888888776632  137899999999999999999999999999999886   4889999999875421    


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821          253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP  332 (436)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  332 (436)
                                  ....+..++.++...+ ++++|+..|+++++..|++..++..+..+....+...+..     .....+
T Consensus        95 ------------~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~-----~~~a~~  156 (225)
T 2yhc_A           95 ------------ALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-----YSVAEY  156 (225)
T ss_dssp             -------------------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred             ------------hhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence                        0111223333333333 2555555566555555555433322111110000000000     000078


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      +...|++++|+..|+++++..|+++   +++..+|.++..+|+ +++|+..++++....|++.
T Consensus       157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-NAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCCSCCC
T ss_pred             HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCch
Confidence            8899999999999999999999986   689999999999999 9999999999999888753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=2.7e-14  Score=135.09  Aligned_cols=162  Identities=12%  Similarity=-0.023  Sum_probs=128.9

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL------LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWM  270 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  270 (436)
                      .....+...|++++|+.++++++...+..+.      .+..+|.++...+++++|+.+|++++.+.+..      ..++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            4456778889999999999999998876654      33458888888999999999999999975442      34789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAA---PQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE  343 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~  343 (436)
                      .+|.+|...++ +++|+.+|+++++..   |.    ...+++++|                      .+|..+|++++|+
T Consensus       160 ~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~~A~  216 (293)
T 3u3w_A          160 AIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH----------------------HHHHHHhHHHHHH
Confidence            99999998875 999999999999632   12    234566777                      8888888888888


Q ss_pred             HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          344 EYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       344 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      .++++++++.+..      +.+++++|.++..+|+++++|+.+|++|+.+
T Consensus       217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            8888888875433      6788888888888885368888888888865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=3.8e-14  Score=116.88  Aligned_cols=108  Identities=12%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM  270 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  270 (436)
                      +.++.++|+++++.|++++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|.+       ..++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999998865       35788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      .+|.++..++ ++++|+++|++++...|+ ++....+
T Consensus        88 ~lg~~~~~~~-~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQN-DLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            8999988887 499999999999999885 4444333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=2e-13  Score=109.97  Aligned_cols=116  Identities=21%  Similarity=0.376  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      ..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++   
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la---   84 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG---   84 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHHHHHHH---
Confidence            44555555555555555555555555555555555555555555555543 55555555555555555555555555   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL  370 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  370 (436)
                                         .++...|++++|+.+|+++++.+|.+..++..++.++...
T Consensus        85 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           85 -------------------NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence                               4555555555555555555555555555555555555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.57  E-value=1.5e-15  Score=153.30  Aligned_cols=147  Identities=8%  Similarity=0.084  Sum_probs=134.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013821          244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYA  308 (436)
Q Consensus       244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la  308 (436)
                      ..+++++|+..|++++...|.....+..+|.+++..++ |++|+.+|+++++++|.+               ..++.++|
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999875 999999999999999998               68888999


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                                            .++.++|+|++|+.+|+++++++|++..+++++|.++..+|+ +++|+..|+++++++
T Consensus       325 ----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          325 ----------------------MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVN  381 (457)
T ss_dssp             ----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred             ----------------------HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Confidence                                  899999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821          389 PADSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       389 p~~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      |++..++..++.++..++++++|...
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887743

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.57  E-value=2e-13  Score=148.76  Aligned_cols=217  Identities=10%  Similarity=-0.024  Sum_probs=160.2

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL  275 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  275 (436)
                      ..+..|..+|..+...|++++|+..|.++     +++..|..+|.++.+.|++++|+++|..+.+..++ +.+...+|.+
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence            44577888888888888888888888775     67788888888888888888888888888877643 2223347777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHH
Q 013821          276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAIL  351 (436)
Q Consensus       276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~  351 (436)
                      |.++++ +++ ++.|.     ...+...+..+|..+...|++++|...|..+-.-    .++.++|++++|++++++|  
T Consensus      1177 YAKl~r-lee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A         1177 LAKTNR-LAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred             HHhhcC-HHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence            777754 663 44442     2334456667898899999999888888854222    7888889999999999888  


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-
Q 013821          352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-  430 (436)
Q Consensus       352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-  430 (436)
                         .+..+|..++.++...|+ |..|..+... +..+|   +.+..++..|...|.+++|+.++++++.+++.+.+.-+ 
T Consensus      1248 ---~n~~aWkev~~acve~~E-f~LA~~cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A         1248 ---NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred             ---CCHHHHHHHHHHHhhhhH-HHHHHHHHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence               556888888888888888 8888887763 44444   45558888899999999999999999999877665443 


Q ss_pred             hhhhc
Q 013821          431 TANVY  435 (436)
Q Consensus       431 ~a~~y  435 (436)
                      .+.+|
T Consensus      1320 LaiLy 1324 (1630)
T 1xi4_A         1320 LAILY 1324 (1630)
T ss_pred             HHHHH
Confidence            44443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.57  E-value=4.4e-14  Score=133.55  Aligned_cols=164  Identities=12%  Similarity=0.013  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SN  302 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~  302 (436)
                      +...+..+...|++++|+..+++++...+..+.      .+..+|.++...+ ++++|+.+|++++++.+..      ..
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            445577889999999999999999998877655      2334777766554 5999999999999976542      33


Q ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHH
Q 013821          303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~  375 (436)
                      ++.++|                      .+|..+|++++|+.+|+++++..       +....+++++|.++..+|+ ++
T Consensus       157 ~~~~lg----------------------~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~  213 (293)
T 3u3w_A          157 IENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YE  213 (293)
T ss_dssp             HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HH
Confidence            577788                      88999999999999999999642       2234689999999999999 99


Q ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhC
Q 013821          376 KALCYFERAVQASPAD------SHVLAAYACFLWETEE-DEDDSKSSDQFQQVA  422 (436)
Q Consensus       376 eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~  422 (436)
                      +|+.++++++++.+..      +.++..+|.++..+|+ +++|+++|++++.+.
T Consensus       214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999999886543      6899999999999995 699999999999874

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=1e-13  Score=114.66  Aligned_cols=119  Identities=14%  Similarity=-0.001  Sum_probs=71.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA  306 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~  306 (436)
                      .+|.++..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...++ +++|+.+|+++++++|++..+++.
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHHHH
Confidence            3455566666666666666666666666666666666666666666666665553 666666666666666666666666


Q ss_pred             HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 013821          307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-----DGEIMSQYAKLVW  368 (436)
Q Consensus       307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~  368 (436)
                      +|                      .++...|++++|+.+|+++++++|+     +..++..+..+..
T Consensus        83 l~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           83 LG----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HH----------------------HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            66                      5555566666666666666666555     4445554444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=4.6e-14  Score=115.37  Aligned_cols=102  Identities=22%  Similarity=0.107  Sum_probs=92.2

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  279 (436)
                      .+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH
Q 013821          280 HRDQHRALTYFERAALAAPQDSN  302 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~~~  302 (436)
                      ++ +++|+..|+++++++|++..
T Consensus        99 g~-~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HN-ANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HH-HHHHHHHHHHHHC-------
T ss_pred             CC-HHHHHHHHHHHHHhCcCCCC
Confidence            86 99999999999999998654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=3.6e-13  Score=108.43  Aligned_cols=121  Identities=18%  Similarity=0.397  Sum_probs=110.1

Q ss_pred             CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          262 DPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       262 ~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      +|.. ..+++.+|.++...++ +++|+..|+++++..|.+..++..++                      .++...|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~~~~~   60 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG----------------------NAYYKQGDYD   60 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred             CccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCcHHHHHHHH----------------------HHHHHhCCHH
Confidence            4555 7789999999888874 99999999999999999999999999                      8888999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821          341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE  406 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  406 (436)
                      +|+.+|++++...|.+..++..+|.++...|+ +++|+.+|+++++.+|.+..++..++.++...|
T Consensus        61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 999999999999999999999999999887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.54  E-value=1e-13  Score=114.62  Aligned_cols=122  Identities=13%  Similarity=0.050  Sum_probs=103.1

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821          260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL  339 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~  339 (436)
                      ..+|.++..++.+|.+++..++ +++|+.+|++++..+|++..++..+|                      .++...|++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~----------------------~~~~~~~~~   59 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLVAVYYTNRA----------------------LCYLKMQQP   59 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCH
T ss_pred             CCccccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhCcCcHHHHHHHH----------------------HHHHHhcCH
Confidence            3567788899999999888874 99999999999999999999999999                      888888999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHC
Q 013821          340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-----DSHVLAAYACFLWET  405 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~-----~~~~~~~la~~~~~~  405 (436)
                      ++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|++++.+.|+     +..+...+..+..+.
T Consensus        60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           60 EQALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 99999999999998887     566666666655443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=5.6e-14  Score=120.53  Aligned_cols=115  Identities=15%  Similarity=0.043  Sum_probs=105.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      +..+...|+.++..|++++|+..|++++..                  +|.+..+|.++|.+|..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467889999999999999999999999999                  77777999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 013821          260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYACFLWE  313 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~  313 (436)
                      +++|.++.+++.+|.++..+++ +++|+..|+++++++|++. .+...+..+...
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999985 9999999999999999998 667777755444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.53  E-value=1.6e-14  Score=142.17  Aligned_cols=215  Identities=9%  Similarity=-0.010  Sum_probs=99.6

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +..|..+|..+.+.|++++|++.|.++     +++..+...+.++...|++++|+.+++.+++..++ +.+...++.+|.
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~  105 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence            358999999999999999999999774     46678999999999999999999999999986444 778888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhC
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILAN  353 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~  353 (436)
                      ++++ +.++.++++.     | +..+|..+|..+...|.+++|...+...-.-    .++.++|+|++|++.|+++    
T Consensus       106 Klg~-l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA----  174 (449)
T 1b89_A          106 KTNR-LAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA----  174 (449)
T ss_dssp             ---C-HHHHTTTTTC-----C-----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred             HhCC-HHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence            9875 9998888853     4 4459999999999999999999999843211    8999999999999999999    


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hh
Q 013821          354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TA  432 (436)
Q Consensus       354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a  432 (436)
                       .++.+|..+..++...|+ ++.|..+... +..+|+   -...+..+|.+.|++++|+.++++++.+++.+.+.-+ .+
T Consensus       175 -~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~  248 (449)
T 1b89_A          175 -NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA  248 (449)
T ss_dssp             -TCHHHHHHHHHHHHHTTC-HHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             -CCchhHHHHHHHHHHcCc-HHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence             478999999999999999 9999887775 334554   4557888999999999999999999999988766554 44


Q ss_pred             hhc
Q 013821          433 NVY  435 (436)
Q Consensus       433 ~~y  435 (436)
                      .+|
T Consensus       249 il~  251 (449)
T 1b89_A          249 ILY  251 (449)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=5.6e-13  Score=106.24  Aligned_cols=74  Identities=14%  Similarity=0.038  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      .++.+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+..++++++.+|.+..++..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            334444444444444444444444444444444444444444433332 44444444444444444444444444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.52  E-value=4.7e-14  Score=119.84  Aligned_cols=110  Identities=13%  Similarity=0.034  Sum_probs=100.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-------HPL-----LLRNYAQLLQKKGDLYRAEDYYNHATMA----  261 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~----  261 (436)
                      +..+.++|+.++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|+|++|+..|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            356789999999999999999999999999998       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          262 ---DPGDGESW----MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       262 ---~p~~~~~~----~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                         +|++..+|    +++|.++..+++ +++|+.+|+++++++|++..+...+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~  143 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKE  143 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence               99999999    999999999986 99999999999999998766554444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.52  E-value=3.8e-13  Score=107.27  Aligned_cols=112  Identities=16%  Similarity=0.131  Sum_probs=106.8

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      ...+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      ..++ +++|+.+|+++++.+|++..++..++.+
T Consensus        84 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            9875 9999999999999999999999988854

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.52  E-value=1e-13  Score=113.28  Aligned_cols=95  Identities=18%  Similarity=0.102  Sum_probs=87.8

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                      ..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|+ +++|+..|+++++++|++..++..+|.++...|++++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~  103 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  103 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            888899999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCh
Q 013821          411 DSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       411 A~~~~~~al~l~p~~~  426 (436)
                      |+..|++++++.|.+.
T Consensus       104 A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A          104 ALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCcCCC
Confidence            9999999999999865

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.52  E-value=1.4e-13  Score=118.02  Aligned_cols=76  Identities=17%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERA  293 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a  293 (436)
                      +..+..+|..++..|+|++|+..|.+++.+                  +|.+..++.++|.++..+++ +++|+.+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~a   89 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            467888999999999999999999999887                  33334444444444444442 44444444444


Q ss_pred             HHhCCCCHHHHHHHH
Q 013821          294 ALAAPQDSNILAAYA  308 (436)
Q Consensus       294 l~~~p~~~~~~~~la  308 (436)
                      ++++|+++.+++.+|
T Consensus        90 l~~~p~~~~a~~~~g  104 (162)
T 3rkv_A           90 LKREETNEKALFRRA  104 (162)
T ss_dssp             HHHSTTCHHHHHHHH
T ss_pred             HhcCCcchHHHHHHH
Confidence            444444444444444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.52  E-value=1.1e-13  Score=122.36  Aligned_cols=93  Identities=9%  Similarity=0.048  Sum_probs=71.2

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILA---NPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADS----HVLAA  397 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p--~~~----~~~~~  397 (436)
                      .++...|++++|+.++++++.+   .++    ...++.++|.++..+|+ +++|+.++++++.+.+  .+.    .++..
T Consensus        74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  152 (203)
T 3gw4_A           74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRG  152 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            7777778888888888888777   332    24568888999999988 9999999999887632  222    34678


Q ss_pred             HHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          398 YACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       398 la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      +|.++...|++++|+.++++++++...
T Consensus       153 la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          153 LGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            888999999999999999988887533

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.52  E-value=1.8e-14  Score=146.21  Aligned_cols=136  Identities=15%  Similarity=0.062  Sum_probs=120.2

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +.++..+|.++...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|.++.+++.+|.++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH--HHHcCCHHHHHHHHH--------
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP--IQSKGDLEGAEEYFS--------  347 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~g~~~~A~~~~~--------  347 (436)
                      .+++ +++|++.|+++++++|++..++..++                      .+  +..+|++++|++.++        
T Consensus        86 ~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~~~g~~~~A~~~~~~~~~~~~~  142 (477)
T 1wao_1           86 ALGK-FRAALRDYETVVKVKPHDKDAKMKYQ----------------------ECNKIVKQKAFERAIAGDEHKRSVVDS  142 (477)
T ss_dssp             HHTC-HHHHHHHHHHHHHHSTTCTTHHHHHH----------------------HHHHHHHHHHHCCC------CCSTTTC
T ss_pred             HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHHHHHHHHHHhccccccchhHhh
Confidence            9985 99999999999999999999999988                      54  667788999999998        


Q ss_pred             ---HHHHhCCCC
Q 013821          348 ---RAILANPGD  356 (436)
Q Consensus       348 ---~al~~~p~~  356 (436)
                         +++.++|..
T Consensus       143 ~~~~al~~~~~~  154 (477)
T 1wao_1          143 LDIESMTIEDEY  154 (477)
T ss_dssp             CTTSSCCCCTTC
T ss_pred             hhhhhccccccc
Confidence               777776643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.51  E-value=2.6e-13  Score=128.15  Aligned_cols=187  Identities=13%  Similarity=0.042  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--GDGESWMQYAKLVWELHRDQHRALTYFERAA  294 (436)
Q Consensus       217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~d~~~A~~~~~~al  294 (436)
                      |+..+++.++..+.....+..+|.++...|++++|++++.+++..+|  .+.+++..++.++..+++ .+.|.+.++++.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-VSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence            78889998887666777788999999999999999999999999987  889999999999999986 999999999999


Q ss_pred             HhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 013821          295 LAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPG--DGEIMSQYAKL  366 (436)
Q Consensus       295 ~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~  366 (436)
                      +.+|+    +..++..++..                    ++....|  ++++|...|+++....|+  ....+++   +
T Consensus       164 ~~~~d~~~~~d~~l~~Laea--------------------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~  220 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAES--------------------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L  220 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHH--------------------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H
T ss_pred             hcCccccccchHHHHHHHHH--------------------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H
Confidence            99993    23333444422                    4445455  999999999999888886  3334444   8


Q ss_pred             HHHhcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          367 VWELHHDHDKALCYFERAVQA----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      +.++|+ +++|...++.+++.          +|+++.++.+++.+...+|+  +|.+++.++.+..|+++....
T Consensus       221 ~~~~g~-~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          221 HLQQRN-IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHHTC-HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHcCC-HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            999999 99999999987776          58899999999999999997  899999999999999876544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.50  E-value=1.7e-13  Score=121.10  Aligned_cols=157  Identities=14%  Similarity=0.038  Sum_probs=127.3

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d  282 (436)
                      +..|++++|++.++......+....++..+|.++...|++++|+.++++++.+      .+....++..+|.++...++ 
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN-   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence            45699999999666554433366799999999999999999999999999994      34457889999999999875 


Q ss_pred             HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013821          283 QHRALTYFERAALA---APQD----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP-  354 (436)
Q Consensus       283 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-  354 (436)
                      +++|+.++++++++   .+++    ..++.++|                      .++...|++++|+.++++++.+.+ 
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVA----------------------TVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            99999999999998   4433    44567777                      888889999999999999997642 


Q ss_pred             -CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821          355 -GD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASP  389 (436)
Q Consensus       355 -~~----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p  389 (436)
                       .+    ..++.++|.++..+|+ +++|+.++++++++..
T Consensus       140 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          140 ADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRARDIFA  178 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHH
Confidence             22    3457899999999999 9999999999998754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.50  E-value=1.2e-14  Score=147.46  Aligned_cols=165  Identities=13%  Similarity=0.069  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      +..+..+|.++...|++++|+++|+++++++|.+..++..+|.++..+++ +++|+.+|+++++++|++..+++++|   
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~lg---   81 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA---   81 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence            45567788899999999999999999999999999999999999999985 99999999999999999999999999   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHH-------
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFE-------  382 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~eA~~~~~-------  382 (436)
                                         .+|..+|++++|+++|+++++++|++..++..++.+  +..+|+ +++|+..++       
T Consensus        82 -------------------~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~  141 (477)
T 1wao_1           82 -------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVD  141 (477)
T ss_dssp             -------------------HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTT
T ss_pred             -------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHh
Confidence                               889999999999999999999999999999999998  888899 999999999       


Q ss_pred             ----HHHHhCCCCH-----------HHHHHHHHHHHHCCChH--HHHHHHHHHHh
Q 013821          383 ----RAVQASPADS-----------HVLAAYACFLWETEEDE--DDSKSSDQFQQ  420 (436)
Q Consensus       383 ----~al~~~p~~~-----------~~~~~la~~~~~~g~~~--eA~~~~~~al~  420 (436)
                          +++.+.|+..           ..+..+...+...+...  ++...+.++.+
T Consensus       142 ~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e  196 (477)
T 1wao_1          142 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKE  196 (477)
T ss_dssp             CCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence                7777776532           23334444455545443  33345555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.50  E-value=1.4e-13  Score=116.83  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPG-------DGE-----IMSQYAKLVWELHHDHDKALCYFERAVQA-------SPAD  391 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~d~~eA~~~~~~al~~-------~p~~  391 (436)
                      ..++..|+|++|+.+|++||+++|+       +..     +|.++|.++..+|+ +++|+..|.++|++       +|++
T Consensus        19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n~~~e~~pd~   97 (159)
T 2hr2_A           19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELNQDE   97 (159)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccccCCCch
Confidence            8888999999999999999999999       544     99999999999999 99999999999999       9999


Q ss_pred             HHHH----HHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          392 SHVL----AAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       392 ~~~~----~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      ..+|    +++|.++..+|++++|+..|++++++.|...+
T Consensus        98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            9999    99999999999999999999999999886544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.3e-13  Score=111.38  Aligned_cols=112  Identities=19%  Similarity=0.118  Sum_probs=83.0

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY  272 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  272 (436)
                      .....+..+|..+...|++++|+.+|+++++.+|++   ..++..+|.++...|++++|+.++++++..+|.++.+++.+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            456677777777777777777777777777777766   67777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      |.++...++ +++|+.+|+++++++|++..++..++
T Consensus       106 a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~  140 (148)
T 2dba_A          106 SQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            777777664 77777777777777777777666665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.50  E-value=2.9e-12  Score=134.50  Aligned_cols=214  Identities=11%  Similarity=0.037  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE-DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA  293 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a  293 (436)
                      +.....|++++...|.++.+|+.++..+...|+.++|. ..|++|+...|.....|..++.+....+ ++++|...|+++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~  404 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence            45678899999999999999999999999999999997 9999999999999999999999988876 499999999999


Q ss_pred             HHhC-----------CC-----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHc-C
Q 013821          294 ALAA-----------PQ-----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSK-G  337 (436)
Q Consensus       294 l~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~-g  337 (436)
                      +..-           |.           ...+|..++.+..+.++.+.|..++.++++.             .+.... +
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence            9752           53           3568999999999999999999999988763             122233 4


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHH
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      +++.|...|+++++..|+++..|..++......|+ .+.|..+|++++...|+   ...+|..+..+..+.|+.+.+.++
T Consensus       485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v  563 (679)
T 4e6h_A          485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL  563 (679)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            59999999999999999999999999999999999 99999999999999883   557889999999999999999999


Q ss_pred             HHHHHhhCCCChhHHh
Q 013821          415 SDQFQQVAPIRQGAVT  430 (436)
Q Consensus       415 ~~~al~l~p~~~~~~~  430 (436)
                      ++++.+..|+......
T Consensus       564 ~~R~~~~~P~~~~~~~  579 (679)
T 4e6h_A          564 EKRFFEKFPEVNKLEE  579 (679)
T ss_dssp             HHHHHHHSTTCCHHHH
T ss_pred             HHHHHHhCCCCcHHHH
Confidence            9999999998654433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8e-13  Score=110.26  Aligned_cols=117  Identities=19%  Similarity=0.091  Sum_probs=73.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI  303 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~  303 (436)
                      ..|.+...++.+|.++...|++++|+.+|+++++.+|++   ..++..+|.++...++ +++|+.+|+++++.+|++..+
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCccCHHH
Confidence            355666777777777777777777777777777777665   5566666666555543 666666666666666666666


Q ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                      ++.+|                      .++...|++++|+.+|+++++++|++..++..++.+
T Consensus       102 ~~~~a----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          102 LYRRS----------------------QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            66555                      555555666666666666666666655555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.47  E-value=1.5e-12  Score=106.31  Aligned_cols=112  Identities=11%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY  272 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  272 (436)
                      .++..+|.++...|++++|+..|+++++.+|++.   .+++.+|.++...|++++|+.+|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      |.++...++ +++|+..|+++++..|++..+...+..+.
T Consensus        83 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           83 GLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            999999875 99999999999999999998877666433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=2.4e-14  Score=138.62  Aligned_cols=157  Identities=12%  Similarity=-0.045  Sum_probs=79.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +..+..+..+|.+++..|++++|+..|++++.+.|.+..        +...+ ++.++...+.         ..+++++|
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~-~~~~~~~~l~---------~~~~~nla  237 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYG-KYQDMALAVK---------NPCHLNIA  237 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCH-HHHHHHHHHH---------THHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcc-cHHHHHHHHH---------HHHHHHHH
Confidence            344566777788888888888888888888877776541        11111 1344433322         13566677


Q ss_pred             HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                                            .++..+|+|++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++
T Consensus       238 ----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~  294 (338)
T 2if4_A          238 ----------------------ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYA  294 (338)
T ss_dssp             ----------------------HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC--
T ss_pred             ----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC
Confidence                                  677777777777777777777777777777777777777777 777777777777777


Q ss_pred             CCCHHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          389 PADSHVLAAYACF-LWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       389 p~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      |++..++..++.+ ....+..+++...|++++...|...
T Consensus       295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          295 PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ---------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            7777777777776 3344566667777777777776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=6.7e-14  Score=135.51  Aligned_cols=138  Identities=18%  Similarity=0.076  Sum_probs=91.6

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      +..+..+|+.++..|++++|+.+|++++...|++.                 .+|+++|.+|..+|++++|+.+|+++++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999876                 4899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH-HHHcCCH
Q 013821          261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-IQSKGDL  339 (436)
Q Consensus       261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~g~~  339 (436)
                      ++|.+..+|+.+|.+|..+++ +++|+.+|+++++++|++..++..++                      .+ ....+..
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~----------------------~l~~~~~~~~  315 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELR----------------------ALAEQEKALY  315 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC---------------------------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHHHHHH
Confidence            999999999999999999875 99999999999999999999999888                      44 3456778


Q ss_pred             HHHHHHHHHHHHhCCCCHH
Q 013821          340 EGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~~~  358 (436)
                      +++...|.+++...|.++.
T Consensus       316 ~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          316 QKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHhhCCCCCCCC
Confidence            8888999999999887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=5e-13  Score=105.64  Aligned_cols=107  Identities=13%  Similarity=0.145  Sum_probs=101.7

Q ss_pred             CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 013821          297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK  376 (436)
Q Consensus       297 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~e  376 (436)
                      +|++..++..+|                      .++...|++++|+.+|+++++.+|.+..++..+|.++..+|+ +++
T Consensus         2 ~p~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~   58 (112)
T 2kck_A            2 VDQNPEEYYLEG----------------------VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEE   58 (112)
T ss_dssp             CCSSTTGGGGHH----------------------HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHH
T ss_pred             CCCcHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHH
Confidence            577888888899                      888999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCCh
Q 013821          377 ALCYFERAVQASPA--DSHVLAAYACFLWET-EEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       377 A~~~~~~al~~~p~--~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l~p~~~  426 (436)
                      |+.+|+++++..|.  +..++..+|.++..+ |++++|++++++++...|...
T Consensus        59 A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           59 AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999999999  999999999999999 999999999999999988653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.46  E-value=1.1e-12  Score=106.63  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI  303 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~  303 (436)
                      .+..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...++ +++|+.+|++++...|.+       ..+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            456788899999999999999999999999999999999999999888874 999999999999988776       777


Q ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821          304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH  372 (436)
Q Consensus       304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  372 (436)
                      +..+|                      .++...|++++|+.+|+++++..| +...+..++.+...+++
T Consensus        82 ~~~la----------------------~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           82 YARIG----------------------NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            88888                      888889999999999999999998 58888888888766543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.44  E-value=3.3e-12  Score=104.27  Aligned_cols=73  Identities=14%  Similarity=0.029  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYA  308 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la  308 (436)
                      ++.+|.++...|++++|+..|+++++.+|.++   .+++.+|.++...++ +++|+..|+++++.+|++   +.+++.+|
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN-FQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            44455555555555555555555555555444   444445544444432 444444444444444444   44444444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.44  E-value=3.9e-13  Score=113.92  Aligned_cols=100  Identities=13%  Similarity=0.150  Sum_probs=90.8

Q ss_pred             hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL----------YRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      .+.+.+++|+..|+++++++|+++++|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4557899999999999999999999999999999998875          599999999999999999999999999998


Q ss_pred             Hc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          279 LH----------RDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       279 ~~----------~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      ++          +++++|+++|++|++++|++...+..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            75          3599999999999999999977665544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=1.4e-12  Score=102.94  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=98.5

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYA  273 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la  273 (436)
                      .....|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.  +..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 013821          274 KLVWEL-HRDQHRALTYFERAALAAPQD  300 (436)
Q Consensus       274 ~~~~~~-~~d~~~A~~~~~~al~~~p~~  300 (436)
                      .++... ++ +++|++++++++...|.+
T Consensus        84 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           84 DALRYIEGK-EVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHTTCSSC-SHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHhCC-HHHHHHHHHHHhhcccCC
Confidence            999888 85 999999999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.43  E-value=1.6e-12  Score=105.64  Aligned_cols=117  Identities=13%  Similarity=0.164  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013821          265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE  344 (436)
Q Consensus       265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~  344 (436)
                      .+..++.+|.++...+ ++++|+.+|+++++.+|.+..++..+|                      .++...|++++|+.
T Consensus         3 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la----------------------~~~~~~~~~~~A~~   59 (131)
T 1elr_A            3 QALKEKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQA----------------------AVYFEKGDYNKCRE   59 (131)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHhccHHHHHH
Confidence            4578899999998887 599999999999999999999999999                      88889999999999


Q ss_pred             HHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821          345 YFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE  406 (436)
Q Consensus       345 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  406 (436)
                      +|++++...|.+       ..+++.+|.++...|+ +++|+.+|++++...| +..++..++.+...++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK-YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            999999998877       8999999999999999 9999999999999999 5888888888776544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.6e-12  Score=129.04  Aligned_cols=201  Identities=11%  Similarity=0.007  Sum_probs=164.1

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      |.+....|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556677788889999999999999999887642                 4688999999999999999999999998


Q ss_pred             hCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821          261 ADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAP------QDSNILAAYACFLWEMEDDGEDDKAQEEHI  328 (436)
Q Consensus       261 ~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  328 (436)
                      ..+...      .+...++.++...+ ++++|+.++++++...+      ....++..+|                    
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la--------------------  142 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA--------------------  142 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH--------------------
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH--------------------
Confidence            765532      24455666655554 59999999999988643      2356777888                    


Q ss_pred             HHhHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CC----HHHH
Q 013821          329 QVLPIQSKGDLEGAEEYFSRAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP---AD----SHVL  395 (436)
Q Consensus       329 ~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p---~~----~~~~  395 (436)
                        .++...|+|++|+.++++++..      .+...+++..++.++..+|+ +++|..++++++.+.+   ..    ..++
T Consensus       143 --~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~  219 (434)
T 4b4t_Q          143 --TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELD  219 (434)
T ss_dssp             --HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             --HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence              8888999999999999999876      23446799999999999999 9999999999987643   22    3567


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          396 AAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       396 ~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      ..+|.++...+++++|..+|.+++...
T Consensus       220 ~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          220 LMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            888999999999999999999998753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.42  E-value=9.1e-12  Score=135.96  Aligned_cols=207  Identities=11%  Similarity=0.011  Sum_probs=158.7

Q ss_pred             CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHcCCH
Q 013821          196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---------------------------HPLLLRNYAQLLQKKGDL  248 (436)
Q Consensus       196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---------------------------~~~~~~~la~~~~~~g~~  248 (436)
                      +++..|..+|.++.+.|++++|+++|..+.+..++                           +...+..+|..+...|+|
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence            45678999999999999999999999988866532                           123355677777777777


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-
Q 013821          249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH-  327 (436)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-  327 (436)
                      ++|+.+|.++        ..|..+|.++.++++ +++|+++++++     .+..+|...+.++.+.|++..|....... 
T Consensus      1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge-~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A         1212 DAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred             HHHHHHHHhh--------hHHHHHHHHHHHhCC-HHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence            7777777765        366777777777764 77777777777     55677777777777777776666655321 


Q ss_pred             -----HHH--hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHH
Q 013821          328 -----IQV--LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSH  393 (436)
Q Consensus       328 -----~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p-----~~~~  393 (436)
                           +..  ..|...|.|++|+.++++++.+++.+...+..+|.++.+  -++ ..+++++|...+.+.|     ++..
T Consensus      1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek-lmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A         1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH-HHHHHHHHHHhcccchHhHHHHHHH
Confidence                 111  678899999999999999999999999999888888765  445 7788888888888777     7788


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHH
Q 013821          394 VLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       394 ~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      .|..+..+|.+.|+++.|+.....
T Consensus      1357 lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A         1357 LWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHh
Confidence            999999999999999999854433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.42  E-value=1.7e-12  Score=127.17  Aligned_cols=140  Identities=18%  Similarity=0.132  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      +..+..+|..++..|++++|+..|++++++.+..+                   +....++....+|.+..++.++|   
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~nla---  280 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------AAAEDADGAKLQPVALSCVLNIG---  280 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------HHSCHHHHGGGHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------------cccChHHHHHHHHHHHHHHHHHH---
Confidence            45688899999999999999999999987533211                   01112333345556666777777   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                                         .++..+|++++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++|++
T Consensus       281 -------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          281 -------------------ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPED  340 (370)
T ss_dssp             -------------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred             -------------------HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC
Confidence                               666777777777777777777777777777777777777777 777777777777777777


Q ss_pred             HHHHHHHHHHHHHCCChHHHHH
Q 013821          392 SHVLAAYACFLWETEEDEDDSK  413 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~eA~~  413 (436)
                      ..++..++.++..+++++++.+
T Consensus       341 ~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          341 KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.41  E-value=1.8e-12  Score=126.96  Aligned_cols=122  Identities=11%  Similarity=0.047  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF  346 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~  346 (436)
                      ..+..+|..++..++ +++|+..|++++++.+...                                        +....
T Consensus       224 ~~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~----------------------------------------~~~~~  262 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSR----------------------------------------AAAED  262 (370)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH----------------------------------------HHSCH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCc----------------------------------------cccCh
Confidence            457788989888875 9999999999998643211                                        11123


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821          347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  426 (436)
                      ..+...+|.+..+|.++|.++..+|+ +++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|...
T Consensus       263 ~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~  341 (370)
T 1ihg_A          263 ADGAKLQPVALSCVLNIGACKLKMSD-WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  341 (370)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            44455677788999999999999999 99999999999999999999999999999999999999999999999999876


Q ss_pred             hHHh
Q 013821          427 GAVT  430 (436)
Q Consensus       427 ~~~~  430 (436)
                      ....
T Consensus       342 ~~~~  345 (370)
T 1ihg_A          342 AIQA  345 (370)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=1.5e-12  Score=110.26  Aligned_cols=106  Identities=15%  Similarity=0.192  Sum_probs=82.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---------DQHRALTYFERAALAAPQDSNILAAYACFLWE  313 (436)
Q Consensus       243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  313 (436)
                      .+.+.+++|+..++++++++|+++++|.++|.++...++         .+++|+..|+++++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            356779999999999999999999999999999998875         13599999999999999999999999955544


Q ss_pred             ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI  359 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  359 (436)
                      +|...-           ......|++++|+.+|++|++++|++...
T Consensus        93 lg~l~P-----------~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           93 FAFLTP-----------DETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccCc-----------chhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            331000           00111257888888888888888886533

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=6.4e-13  Score=107.47  Aligned_cols=98  Identities=15%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             hCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          210 NFDDSAEAEEYYKRMIDE---YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       210 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      ..|++++|+.+|+++++.   +|+++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...++ +++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-YEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-HHHH
Confidence            358899999999999999   588889999999999999999999999999999999999999999999999985 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHH
Q 013821          287 LTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +.+|+++++..|+++.+.....
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHH
Confidence            9999999999999988765444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.38  E-value=1.2e-13  Score=135.95  Aligned_cols=217  Identities=13%  Similarity=0.054  Sum_probs=135.0

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ..+++..|+..+....+  .+.....++.++.+.|++.+++++++.     | +..+|..+|..+...|+|++|..+|.+
T Consensus        76 ~~EeAi~yl~~ark~~~--~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~  147 (449)
T 1b89_A           76 NWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNN  147 (449)
T ss_dssp             -----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34456666666655322  244556677777777888777777752     4 345888888888888888888888887


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-------HHH
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH-------IQV  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~  330 (436)
                      +        ..|..+|.++.++++ |++|++.|+++     +++.+|.....++...|+++.|.......       ...
T Consensus       148 a--------~n~~~LA~~L~~Lg~-yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~l  213 (449)
T 1b89_A          148 V--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL  213 (449)
T ss_dssp             T--------TCHHHHHHHHHTTTC-HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHH
T ss_pred             h--------hhHHHHHHHHHHhcc-HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHH
Confidence            6        467888888888874 88888888888     57888888888888888888775444311       011


Q ss_pred             -hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHH
Q 013821          331 -LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSHVLAAYACFL  402 (436)
Q Consensus       331 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p-----~~~~~~~~la~~~  402 (436)
                       .+|.+.|++++|+.++++++.+++.+..++..+|.++.+  .++ ..+.++.|...+.+.|     ++...|..+..+|
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly  292 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY  292 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence             678999999999999999999999999999999998865  455 6677777777777777     7788999999999


Q ss_pred             HHCCChHHHHHHHHH
Q 013821          403 WETEEDEDDSKSSDQ  417 (436)
Q Consensus       403 ~~~g~~~eA~~~~~~  417 (436)
                      .+.++++.|+....+
T Consensus       293 ~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          293 DKYEEYDNAIITMMN  307 (449)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HhhchHHHHHHHHHh
Confidence            999999999876544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.37  E-value=6e-12  Score=105.84  Aligned_cols=132  Identities=15%  Similarity=0.113  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------  300 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------  300 (436)
                      .++..+|.++...|++++|+.++++++++.+..      ..++..+|.++...++ +++|+.++++++++.+..      
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHH
Confidence            455666666666666666666666666553321      1244455555555442 555555555555443221      


Q ss_pred             HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCH
Q 013821          301 SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDH  374 (436)
Q Consensus       301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~  374 (436)
                      ..++..+|                      .++...|++++|+.++++++.+.+.      ...++..+|.++..+|+ +
T Consensus        89 ~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~  145 (164)
T 3ro3_A           89 AQSCYSLG----------------------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-H  145 (164)
T ss_dssp             HHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-H
T ss_pred             HHHHHHHH----------------------HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-H
Confidence            22333444                      5555555555555555555544211      13445555666666655 6


Q ss_pred             HHHHHHHHHHHHhC
Q 013821          375 DKALCYFERAVQAS  388 (436)
Q Consensus       375 ~eA~~~~~~al~~~  388 (436)
                      ++|+.++++++++.
T Consensus       146 ~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          146 DQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666655543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.36  E-value=1.2e-12  Score=105.77  Aligned_cols=97  Identities=12%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821          282 DQHRALTYFERAALA---APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE  358 (436)
Q Consensus       282 d~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  358 (436)
                      ++++|+.+|++++++   +|++..++..+|                      .++...|++++|+.+|+++++.+|+++.
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~   62 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLG----------------------STFRTLGEYRKAEAVLANGVKQFPNHQA   62 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence            588999999999998   588888999999                      8888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      +++++|.++..+|+ +++|+..|++++...|+++.+......+
T Consensus        63 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           63 LRVFYAMVLYNLGR-YEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999 9999999999999999988765443333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.35  E-value=6.9e-12  Score=105.42  Aligned_cols=135  Identities=12%  Similarity=0.118  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL  339 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~  339 (436)
                      ..++..+|.+++..++ +++|+.++++++++.+...      .++..+|                      .++...|++
T Consensus         9 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~   65 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG----------------------NAYIFLGEF   65 (164)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------HHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH----------------------HHHHHcCCH
Confidence            4578899999998875 9999999999999865422      3556666                      888999999


Q ss_pred             HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC
Q 013821          340 EGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEE  407 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~  407 (436)
                      ++|+.++++++++.+..      ..++.++|.++..+|+ +++|+.++++++.+.+.      ...++..+|.++...|+
T Consensus        66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  144 (164)
T 3ro3_A           66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  144 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence            99999999999886543      5689999999999999 99999999999987432      24678999999999999


Q ss_pred             hHHHHHHHHHHHhhCCC
Q 013821          408 DEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       408 ~~eA~~~~~~al~l~p~  424 (436)
                      +++|+.++++++++...
T Consensus       145 ~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          145 HDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=5.1e-11  Score=112.43  Aligned_cols=186  Identities=11%  Similarity=-0.007  Sum_probs=149.8

Q ss_pred             hHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      +..++..-+.... .....+..+|.++...|++++|++++.+.+..+|  ++.+++..++.++..+|+.+.|.+.++++.
T Consensus        85 a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4555665555443 3456667899999999999999999999999987  788999999999999999999999999999


Q ss_pred             HhCCC----CHHHHHHH--HHHHHHHc-CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821          260 MADPG----DGESWMQY--AKLVWELH-RDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       260 ~~~p~----~~~~~~~l--a~~~~~~~-~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  330 (436)
                      +.+|+    +-.++..+  +.+....+ +++.+|...|+++.+..|+  ....++                         
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl-------------------------  218 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL-------------------------  218 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH-------------------------
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH-------------------------
Confidence            99993    23333444  44455544 2599999999999888886  233333                         


Q ss_pred             hHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILA----------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                      .++..+|++++|...++.+++.          +|+++.++.+++.+...+|+   +|.+++.++.+.+|+++.+..
T Consensus       219 n~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          219 NLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---HHHHHHHHHHHhCCCChHHHH
Confidence            3456789999999999988776          58899999999999999987   789999999999999986653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.23  E-value=4.5e-10  Score=117.86  Aligned_cols=208  Identities=9%  Similarity=-0.028  Sum_probs=181.5

Q ss_pred             HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAE-EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      ...|.+++...+ ..+..|+..+......|+.++|. ..|++++...|.....|+.++.+....|++++|...|++++..
T Consensus       329 ~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          329 TYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356888888888 79999999999999999999997 9999999999999999999999999999999999999999975


Q ss_pred             -----------CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC-c
Q 013821          262 -----------DPG-----------DGESWMQYAKLVWELHRDQHRALTYFERAALA-APQDSNILAAYACFLWEMED-D  317 (436)
Q Consensus       262 -----------~p~-----------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~  317 (436)
                                 .|.           ...+|..++.+....++ .+.|...|.+|++. .+....+|...+.+....++ .
T Consensus       408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence                       253           35689999998888876 99999999999998 55567788888888887765 7


Q ss_pred             hHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821          318 GEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFE  382 (436)
Q Consensus       318 ~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~eA~~~~~  382 (436)
                      +.|..+++..++.            ......|+.+.|..+|++|+...|   ....+|..+...-...|. .+.+..+++
T Consensus       487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-~~~~~~v~~  565 (679)
T 4e6h_A          487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-LNSVRTLEK  565 (679)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-SHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence            9999999988877            444567999999999999999988   356788888888889999 999999999


Q ss_pred             HHHHhCCCCHH
Q 013821          383 RAVQASPADSH  393 (436)
Q Consensus       383 ~al~~~p~~~~  393 (436)
                      ++++..|++..
T Consensus       566 R~~~~~P~~~~  576 (679)
T 4e6h_A          566 RFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHSTTCCH
T ss_pred             HHHHhCCCCcH
Confidence            99999998753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.22  E-value=1.2e-10  Score=93.35  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA  364 (436)
Q Consensus       285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  364 (436)
                      +|+..|+++++.+|++..+++.+|                      .++...|++++|+.+|+++++++|.+..+|+.+|
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   60 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLG----------------------KTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG   60 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            578889999999999999999999                      8888899999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC
Q 013821          365 KLVWELHHDHDKALCYFERAVQASPA--DSHVLAAYACFLWET  405 (436)
Q Consensus       365 ~~~~~~g~d~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~  405 (436)
                      .++..+|+ +++|+..|++++++.|.  +......+...+..+
T Consensus        61 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           61 KTLQGQGD-RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence            99999999 99999999999998874  345555555544443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.20  E-value=1.7e-10  Score=92.45  Aligned_cols=95  Identities=18%  Similarity=0.149  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL  295 (436)
Q Consensus       216 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~  295 (436)
                      +|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|.+..+|+.+|.++...++ +++|+..|+++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999999999999999999999875 9999999999999


Q ss_pred             hCCC--CHHHHHHHHHHH
Q 013821          296 AAPQ--DSNILAAYACFL  311 (436)
Q Consensus       296 ~~p~--~~~~~~~la~~~  311 (436)
                      +.|.  +......+...+
T Consensus        82 ~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHH
Confidence            9874  445555555333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.18  E-value=2.4e-11  Score=96.15  Aligned_cols=86  Identities=13%  Similarity=0.058  Sum_probs=81.1

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWE  404 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~  404 (436)
                      .++...|++++|+.+|+++++++|.++.+++++|.++..+|+ +++|+..|+++++++|++      ..++..+|.++..
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~   90 (111)
T 2l6j_A           12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA   90 (111)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999 999999999999999999      8899999999999


Q ss_pred             CCChHHHHHHHHH
Q 013821          405 TEEDEDDSKSSDQ  417 (436)
Q Consensus       405 ~g~~~eA~~~~~~  417 (436)
                      +|++++|+..+++
T Consensus        91 ~~~~~~a~~~~~~  103 (111)
T 2l6j_A           91 VGSVQIPVVEVDE  103 (111)
T ss_dssp             HHCCCCCSSSSSS
T ss_pred             HHhHhhhHhHHHH
Confidence            9999888766553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.3e-11  Score=96.27  Aligned_cols=92  Identities=13%  Similarity=0.029  Sum_probs=68.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQ  271 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  271 (436)
                      ...|..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            35677777777778888888888888888888888888888888888888888888888888887777      777777


Q ss_pred             HHHHHHHHcCCHHHHHHHH
Q 013821          272 YAKLVWELHRDQHRALTYF  290 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~  290 (436)
                      +|.++...+. ++.|+..+
T Consensus        84 ~~~~~~~~~~-~~~a~~~~  101 (111)
T 2l6j_A           84 LELAQGAVGS-VQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHC-CCCCSSSS
T ss_pred             HHHHHHHHHh-HhhhHhHH
Confidence            7777766653 55554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.16  E-value=5.1e-10  Score=110.77  Aligned_cols=167  Identities=11%  Similarity=0.017  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----------------GESWMQYAKLVWELHRDQHRALTYFERAAL  295 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~  295 (436)
                      ......|..+...|+|++|++.|.++++..|..                 ..++..+|.+|...++ +++|++++++++.
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTE   83 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence            456677888999999999999999999998865                 2468899999999985 9999999999998


Q ss_pred             hCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 013821          296 AAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQY  363 (436)
Q Consensus       296 ~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l  363 (436)
                      ..+.....      ...++                      .++...|++++|+.++++++...+      ....++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  141 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIE----------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL  141 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHH----------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHH----------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            86654322      23344                      666778999999999999987632      336789999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          364 AKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       364 a~~~~~~g~d~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      |.++...|+ |.+|+.++++++...      +....++..++.++..+|++++|..+|++++.+.+
T Consensus       142 a~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          142 ATLHYQKKQ-YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccC-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            999999999 999999999998762      33457899999999999999999999999998754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=3.4e-10  Score=86.02  Aligned_cols=79  Identities=24%  Similarity=0.269  Sum_probs=42.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      ..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++|.+..++..+|.++.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555555555555555555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.14  E-value=4.8e-10  Score=85.14  Aligned_cols=75  Identities=17%  Similarity=0.331  Sum_probs=71.5

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE  406 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  406 (436)
                      .++...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++|+.+|+++++++|.+..++..+|.++..+|
T Consensus        17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            888899999999999999999999999999999999999999 999999999999999999999999999987764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.08  E-value=2.2e-09  Score=99.08  Aligned_cols=189  Identities=15%  Similarity=0.054  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcC--------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEYPCHPLLLRNYAQLL-------QKKG--------------DLYRAEDYYNHATMADPGDGESWMQYA  273 (436)
Q Consensus       215 ~~A~~~~~~al~~~P~~~~~~~~la~~~-------~~~g--------------~~~~A~~~~~~al~~~p~~~~~~~~la  273 (436)
                      .-.+.+++-.+..+|++...+...|..|       .+..              ++..|...|.++...        -..+
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra  120 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS  120 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence            3467788888999999986655444443       3321              244556666655431        1111


Q ss_pred             HHHHHHcCCHHHHHHH-----HHHH-HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821          274 KLVWELHRDQHRALTY-----FERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       274 ~~~~~~~~d~~~A~~~-----~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~  347 (436)
                      .+ ....+ +.+++..     +.++ -+.+|+++++++..|.+....-....           .-+...+...+|...++
T Consensus       121 L~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~-----------gg~~Al~~l~~A~a~le  187 (301)
T 3u64_A          121 LE-TAYPG-FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTP-----------LGSALPDTVHAAVMMLE  187 (301)
T ss_dssp             HH-HHSTT-HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSC-----------TTSCCHHHHHHHHHHHH
T ss_pred             HH-HhCcc-HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCC-----------CChHHHHhHHHHHHHHH
Confidence            11 11112 4433332     2333 34578899988888865533100000           00011234578999999


Q ss_pred             HHHHhCCC--CHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CChHHHHHHHHHH
Q 013821          348 RAILANPG--DGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPAD-SHVLAAYACFLWET-EEDEDDSKSSDQF  418 (436)
Q Consensus       348 ~al~~~p~--~~~~~~~la~~~~~~-----g~d~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~eA~~~~~~a  418 (436)
                      +|++++|+  +..+|..+|.+|...     |+ .++|..+|++|++++|+. ..++..+|..+... |++++|..+++++
T Consensus       188 rAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          188 RACDLWPSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999  677999999999985     67 999999999999999975 99999999999884 9999999999999


Q ss_pred             HhhCCCC
Q 013821          419 QQVAPIR  425 (436)
Q Consensus       419 l~l~p~~  425 (436)
                      ++.+|..
T Consensus       267 L~a~p~~  273 (301)
T 3u64_A          267 LAIDPES  273 (301)
T ss_dssp             HHCCGGG
T ss_pred             HcCCCCC
Confidence            9998874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.06  E-value=3.1e-10  Score=88.11  Aligned_cols=91  Identities=13%  Similarity=0.104  Sum_probs=80.7

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  279 (436)
                      .+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|+++++++|++..++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            356788999999999999999999999999999 99999999999999999999999999999999887744        


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 013821          280 HRDQHRALTYFERAALAAPQD  300 (436)
Q Consensus       280 ~~d~~~A~~~~~~al~~~p~~  300 (436)
                      +. +.+++..|++++..+|++
T Consensus        75 ~~-~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KM-VMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HH-HHHHHHHHCCTTHHHHCC
T ss_pred             HH-HHHHHHHHHHHhccCccc
Confidence            22 788899998888887765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.03  E-value=1.4e-09  Score=85.04  Aligned_cols=84  Identities=20%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNIL  304 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~  304 (436)
                      .+|+++.+++.+|.++...|++++|+.+|+++++++|.++.+|+.+|.++...++ +++|+..|++++++.|.  +....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhHH
Confidence            3577777888888888888888888888888888888887788888877777764 88888888888777653  34444


Q ss_pred             HHHHHHH
Q 013821          305 AAYACFL  311 (436)
Q Consensus       305 ~~la~~~  311 (436)
                      ..+..++
T Consensus        81 ~~l~~~l   87 (100)
T 3ma5_A           81 SELQDAK   87 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=6.7e-09  Score=86.50  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHH
Q 013821          213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HRDQHRALTY  289 (436)
Q Consensus       213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~d~~~A~~~  289 (436)
                      ++++|+.+|+++.+.......    +|.+|...+.+++|+.+|+++.+.  .++.+++.+|.+|..-   .+|+++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            445555555555554422222    555555545555555555555443  3444455555444430   1234444444


Q ss_pred             HHHHHHhCCCCHHHHHHHH
Q 013821          290 FERAALAAPQDSNILAAYA  308 (436)
Q Consensus       290 ~~~al~~~p~~~~~~~~la  308 (436)
                      |+++.+.  .++.+++++|
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg  100 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILG  100 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHcC--CCHHHHHHHH
Confidence            4444433  3344444444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.02  E-value=6.8e-09  Score=86.48  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      +++++|+.+|+++.+.......    +|.+|....+ +++|+++|+++.+.  .++.+++++|                 
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~-~~~A~~~~~~Aa~~--g~~~a~~~Lg-----------------   64 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQIN-KQKLFQYLSKACEL--NSGNGCRFLG-----------------   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSC-HHHHHHHHHHHHHT--TCHHHHHHHH-----------------
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCC-HHHHHHHHHHHHcC--CCHHHHHHHH-----------------
Confidence            4678899999999888754444    8877766554 88899999999887  7888999999                 


Q ss_pred             HHHHHhHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          326 EHIQVLPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAA  397 (436)
Q Consensus       326 ~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~  397 (436)
                           .+|..    .+++++|+.+|+++.+.  .++.++++||.+|..    .++ +++|+.+|+++.+..  ++.+...
T Consensus        65 -----~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g--~~~A~~~  134 (138)
T 1klx_A           65 -----DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRLG--SEDACGI  134 (138)
T ss_dssp             -----HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             -----HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHCC--CHHHHHH
Confidence                 67776    78999999999999876  678899999999888    666 999999999998874  4556555


Q ss_pred             HH
Q 013821          398 YA  399 (436)
Q Consensus       398 la  399 (436)
                      |+
T Consensus       135 l~  136 (138)
T 1klx_A          135 LN  136 (138)
T ss_dssp             C-
T ss_pred             Hh
Confidence            54

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.02  E-value=1.9e-09  Score=84.28  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013821          296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~  375 (436)
                      .+|+++.+++.+|                      .++...|++++|+.+|+++++++|+++.+|+.+|.++..+|+ ++
T Consensus         2 ~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~   58 (100)
T 3ma5_A            2 EDPEDPFTRYALA----------------------QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TD   58 (100)
T ss_dssp             ---CCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HH
T ss_pred             CCccCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HH
Confidence            3688888888888                      888888888889999999998888888888889988888888 88


Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCC
Q 013821          376 KALCYFERAVQASPA--DSHVLAAYACFLWETE  406 (436)
Q Consensus       376 eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g  406 (436)
                      +|+..|++++++.|.  +......+..++...+
T Consensus        59 ~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~   91 (100)
T 3ma5_A           59 DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence            999999888887653  3444455555544433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=1.1e-09  Score=85.04  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGE-IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE  409 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  409 (436)
                      .++...|++++|+..|+++++.+|++.. +++.+|.++..+|+ +++|+.+|+++++++|++..++..        +.+.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~--------~~~~   78 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQAR--------KMVM   78 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH--------HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHH--------HHHH
Confidence            7788999999999999999999999999 99999999999999 999999999999999999887744        5567


Q ss_pred             HHHHHHHHHHhhCCCCh
Q 013821          410 DDSKSSDQFQQVAPIRQ  426 (436)
Q Consensus       410 eA~~~~~~al~l~p~~~  426 (436)
                      +++..|+++....|...
T Consensus        79 ~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           79 DILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHhccCcccc
Confidence            88888888887776554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.95  E-value=4.7e-08  Score=93.88  Aligned_cols=146  Identities=16%  Similarity=0.059  Sum_probs=97.4

Q ss_pred             HHHHHhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH----HHHHH----
Q 013821          222 KRMIDEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ----HRALT----  288 (436)
Q Consensus       222 ~~al~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~----~~A~~----  288 (436)
                      +++....|.+..+|  +..|..+...++   +.+|+.+|++|++++|+++.++..++.++..... +    .....    
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-QHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-cCCCchhhHHHHHH
Confidence            34555567665443  455566655444   4788888999999999888888887777653221 1    01111    


Q ss_pred             HHH--HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          289 YFE--RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       289 ~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                      .++  .++..+|.++.++..++                      ..+...|++++|+..+++|+.++|. ..+|..+|.+
T Consensus       263 a~~a~~a~~~~~~~a~~~~ala----------------------l~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~  319 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKA----------------------VSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV  319 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHH----------------------HHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            111  12244577777777777                      5556668888888888888888764 6677777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          367 VWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      +...|+ +++|++.|++|+.++|...
T Consensus       320 ~~~~G~-~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          320 YEMKGM-NREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHTTC-HHHHHHHHHHHHHHSCSHH
T ss_pred             HHHCCC-HHHHHHHHHHHHhcCCCcC
Confidence            888888 8888888888888888754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.94  E-value=3.5e-09  Score=107.01  Aligned_cols=129  Identities=10%  Similarity=0.062  Sum_probs=105.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 013821          236 RNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN  302 (436)
Q Consensus       236 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~  302 (436)
                      ...+..+..+|+|++|+..+++++++     .|++   ..++.++|.+|..+|+ |++|+.++++++++     .|+++.
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            34555677899999999999999986     3444   5678899999999875 99999999999976     355554


Q ss_pred             ---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhc
Q 013821          303 ---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGDG---EIMSQYAKLVWELH  371 (436)
Q Consensus       303 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g  371 (436)
                         .+.+||                      .+|..+|++++|+.+|++|+++     .|+++   ++..+++.++..++
T Consensus       392 ~a~~l~nLa----------------------~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          392 LGMAVMRAG----------------------LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence               456777                      8899999999999999999987     45554   56678999999999


Q ss_pred             CCHHHHHHHHHHHHHhC
Q 013821          372 HDHDKALCYFERAVQAS  388 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~  388 (436)
                      . +++|...|.++.+..
T Consensus       450 ~-~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          450 M-FRQNEFMYHKMREAA  465 (490)
T ss_dssp             H-HHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHH
Confidence            9 999999999987654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.91  E-value=5.2e-09  Score=105.79  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=102.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821          275 LVWELHRDQHRALTYFERAALAA-----PQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF  346 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~-----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~  346 (436)
                      .+..+| +|++|+..|++++++.     |+++.   .+.++|                      .+|..+|+|++|+.++
T Consensus       318 ~~~~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa----------------------~~y~~~g~~~eA~~~~  374 (490)
T 3n71_A          318 KARSEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIAS----------------------EVLSYLQAYEEASHYA  374 (490)
T ss_dssp             HHHTTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHH
T ss_pred             HHHhCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------------------HHHHHhcCHHHHHHHH
Confidence            344455 5999999999999873     55554   456677                      8899999999999999


Q ss_pred             HHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCChHH
Q 013821          347 SRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAYACFLWETEEDED  410 (436)
Q Consensus       347 ~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~e  410 (436)
                      +++|++     .|++   +..+++||.+|..+|+ +++|+.+|++|+++     .|+++   ....+++.++..++.+++
T Consensus       375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            999987     3444   5678999999999999 99999999999975     56666   556789999999999999


Q ss_pred             HHHHHHHHHhh
Q 013821          411 DSKSSDQFQQV  421 (436)
Q Consensus       411 A~~~~~~al~l  421 (436)
                      |...|.++.+.
T Consensus       454 ae~~~~~~~~~  464 (490)
T 3n71_A          454 NEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998763

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.91  E-value=2.2e-07  Score=94.27  Aligned_cols=192  Identities=10%  Similarity=0.054  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA  293 (436)
Q Consensus       214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a  293 (436)
                      .+.....|++++...|..+.+|+.++..+...|+.++|...|++|+.. |.+...|..++... .    .++.   ++++
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e----~~~~---~~~l  265 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-D----EEAV---YGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-T----CTHH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-c----hhHH---HHHH
Confidence            345778999999999999999999999999999999999999999999 99887777655431 1    1111   2222


Q ss_pred             HHhC-------------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHH-cCCHHHHHHHHH
Q 013821          294 ALAA-------------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQS-KGDLEGAEEYFS  347 (436)
Q Consensus       294 l~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~-~g~~~~A~~~~~  347 (436)
                      .+..             +....+|..++.++...+..+.|..++.++ +.            .+... .++.+.|...|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife  344 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS  344 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            2110             112356778888777777788888887766 21            22222 346899999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       348 ~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      .+++..|+.+..|..++......|+ .+.|...|+++    +.....|..+..+....|+.+.+.+.+++++.
T Consensus       345 ~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          345 SGLLKHPDSTLLKEEFFLFLLRIGD-EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999988888888888888888 89999999987    44678888888888888999999888888875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.88  E-value=7.6e-08  Score=92.44  Aligned_cols=156  Identities=9%  Similarity=-0.070  Sum_probs=109.9

Q ss_pred             HHHHhCCCCHHHH--HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821          257 HATMADPGDGESW--MQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP  332 (436)
Q Consensus       257 ~al~~~p~~~~~~--~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  332 (436)
                      ++...-|.+..+|  +..|..+....  .++.+|+.+|+++++++|++..++..++.++........           ..
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~-----------~~  253 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP-----------LD  253 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-----------CC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCC-----------Cc
Confidence            3444456654443  33444444331  236899999999999999999999988866642110000           00


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013821          333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS  412 (436)
Q Consensus       333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  412 (436)
                      -........|... ..++..+|.++.++..++.++...|+ +++|+..+++|+.++|. ..++..+|+++...|++++|+
T Consensus       254 ~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~  330 (372)
T 3ly7_A          254 EKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA  330 (372)
T ss_dssp             HHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence            0000001112221 12335679999999999999998999 99999999999999975 778899999999999999999


Q ss_pred             HHHHHHHhhCCCCh
Q 013821          413 KSSDQFQQVAPIRQ  426 (436)
Q Consensus       413 ~~~~~al~l~p~~~  426 (436)
                      +.|.+|+.++|...
T Consensus       331 e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          331 DAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHSCSHH
T ss_pred             HHHHHHHhcCCCcC
Confidence            99999999999764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.80  E-value=1.1e-06  Score=89.11  Aligned_cols=201  Identities=12%  Similarity=0.057  Sum_probs=146.6

Q ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821          212 DDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKK--GD-----LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~  283 (436)
                      ..+..|...|+.+....+. ....|..+...-...  +-     .+.....|++++...|..+.+|..++..+...+ +.
T Consensus       151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~  229 (493)
T 2uy1_A          151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QK  229 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CH
Confidence            3455566666666654333 445666555543321  11     456788999999999999999999999887765 59


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chHH--------------------HHHHHHHHHHhHHHHcCCHHHH
Q 013821          284 HRALTYFERAALAAPQDSNILAAYACFLWEMED-DGED--------------------DKAQEEHIQVLPIQSKGDLEGA  342 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A--------------------~~~~~~~~~~~~~~~~g~~~~A  342 (436)
                      ++|...|++++.. |.+...|..++... +.+. ++..                    ..++..++  ..+.+.+..+.|
T Consensus       230 ~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~--~~~~r~~~~~~A  305 (493)
T 2uy1_A          230 EKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL--NYVLKKRGLELF  305 (493)
T ss_dssp             HHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHHHHHHHHHTC----------CHHHHHHHHHHHH--HHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH--HHHHHcCCHHHH
Confidence            9999999999999 99988887766541 0000 0000                    01111111  344457789999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821          343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  418 (436)
                      ...|.+| ...+....+|...|.+.+..++|.+.|...|+.+++..|+.+..|..++......|+.+.|...|+++
T Consensus       306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999 44444667888888888877755999999999999999999999999999999999999999998886

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.67  E-value=2.8e-07  Score=85.09  Aligned_cols=108  Identities=15%  Similarity=0.078  Sum_probs=92.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013821          260 MADPGDGESWMQYAKLVWEL----HR------DQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEH  327 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~----~~------d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~  327 (436)
                      ..+|+++++++..|.+....    .+      ...+|...++++++++|+  +..+|..+|                   
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG-------------------  206 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT-------------------  206 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-------------------
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH-------------------
Confidence            45788998888888776442    12      247999999999999999  677999999                   


Q ss_pred             HHHhHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC
Q 013821          328 IQVLPIQSK-----GDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWEL-HHDHDKALCYFERAVQASPA  390 (436)
Q Consensus       328 ~~~~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~d~~eA~~~~~~al~~~p~  390 (436)
                         .+|...     |+.++|.++|++|++++|+. ..+++.+|..+... |+ +++|..++++++...|.
T Consensus       207 ---~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          207 ---KFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             ---HHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHCCGG
T ss_pred             ---HHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCC
Confidence               777774     99999999999999999975 99999999999885 77 99999999999998876

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.62  E-value=3.9e-07  Score=76.22  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhC-C-CCH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILAN-P-GDG  357 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~  357 (436)
                      ...+.+.|.+.++.++.+.++.+++|                      +++.+.+   ++++++..++.+++.+ | .+.
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya----------------------~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r   71 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR   71 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHH----------------------HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence            56777888888888889999999999                      7777777   7779999999999998 7 568


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      +.++++|..++++|+ |++|+++++++++++|++..+....-.+
T Consensus        72 d~lY~LAv~~~kl~~-Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           72 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            899999999999999 9999999999999999988776554433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.61  E-value=2.9e-07  Score=70.90  Aligned_cols=72  Identities=15%  Similarity=0.095  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821          353 NPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI  424 (436)
Q Consensus       353 ~p~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  424 (436)
                      +|++++++..+|.+++..++  ..++|..+++++++++|+++.++..+|..+++.|++++|+.+++++++..|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999986654  2589999999999999999999999999999999999999999999999887

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.58  E-value=3e-07  Score=70.88  Aligned_cols=71  Identities=11%  Similarity=-0.048  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          228 YPCHPLLLRNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ  299 (436)
Q Consensus       228 ~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~  299 (436)
                      +|+++.++..+|.+++..++   .++|..+++++++++|+++.+++.+|.+++..++ |++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~-y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR-FQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence            46677777777777765554   5777777777777777777777777777777653 77777777777777776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.53  E-value=8.6e-07  Score=74.13  Aligned_cols=96  Identities=14%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG---DLYRAEDYYNHATMAD-P-GDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      +....+.+.|.+.++.++.+.++.+++|.++.+.+   +.++++..++..++.+ | .+.+.++.+|..+++.+ +|++|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~A   90 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHHH
Confidence            45677888999999988999999999999999988   6779999999999998 7 57899999999998887 59999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHH
Q 013821          287 LTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +++++++++.+|++..+....-
T Consensus        91 ~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHH
Confidence            9999999999999988876554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.53  E-value=2e-07  Score=92.61  Aligned_cols=95  Identities=8%  Similarity=-0.013  Sum_probs=81.5

Q ss_pred             HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 013821          335 SKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAY  398 (436)
Q Consensus       335 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~---~~~~~l  398 (436)
                      ..|+|++|+..|++++++     .|++   ..++.++|.+|..+|+ |++|+.++++++++     .|+++   ..+.+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            568999999999999987     4555   4678999999999999 99999999999976     35554   678999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHhhC-----CCChhHHh
Q 013821          399 ACFLWETEEDEDDSKSSDQFQQVA-----PIRQGAVT  430 (436)
Q Consensus       399 a~~~~~~g~~~eA~~~~~~al~l~-----p~~~~~~~  430 (436)
                      |.+|..+|++++|+.+|++++++.     |+++....
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            999999999999999999999863     77766554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.48  E-value=1.7e-06  Score=67.95  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=63.5

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      ..++..|+|..|+.+|++|++..       +....++..+|.+++++|+ +++|+.++++++.+.|++..+..+++.+
T Consensus        13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence            88999999999999999999873       3457899999999999999 9999999999999999999998888743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.48  E-value=1.2e-06  Score=68.76  Aligned_cols=74  Identities=12%  Similarity=0.031  Sum_probs=50.3

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY-------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY  272 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  272 (436)
                      ....+|..++..|+|..|+.+|+++++..       +....++..+|.++.++|++++|+.+++++++++|++..+..++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            45567777777777777777777777642       23456677777777777777777777777777777776666655


Q ss_pred             H
Q 013821          273 A  273 (436)
Q Consensus       273 a  273 (436)
                      +
T Consensus        87 ~   87 (104)
T 2v5f_A           87 K   87 (104)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.46  E-value=1.8e-06  Score=85.82  Aligned_cols=98  Identities=10%  Similarity=0.080  Sum_probs=80.7

Q ss_pred             hhhhCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDE-----YPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWM  270 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~  270 (436)
                      .....|+|++|+.+|++++++     .|+++   ..+.++|.+|..+|+|++|+.++++++++     .|++   +..++
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            344578999999999999985     45555   67889999999999999999999999976     3444   56788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALA-----APQDSNILA  305 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~~~~  305 (436)
                      ++|.+|..+|+ +++|+.+|++|+++     .|+++.+..
T Consensus       387 nLa~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          387 KLGRLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999999986 99999999999976     477766543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.38  E-value=6.2e-07  Score=89.17  Aligned_cols=99  Identities=8%  Similarity=-0.041  Sum_probs=83.6

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HV  394 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~---~~  394 (436)
                      .-+..+|+|++|+..+++++++     .|++   ..++.++|.+|..+|+ |++|+.++++++.+     .|+++   ..
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            3455789999999999999976     3444   5678999999999999 99999999999975     35555   67


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhh-----CCCChhHHh
Q 013821          395 LAAYACFLWETEEDEDDSKSSDQFQQV-----APIRQGAVT  430 (436)
Q Consensus       395 ~~~la~~~~~~g~~~eA~~~~~~al~l-----~p~~~~~~~  430 (436)
                      +.+||.+|..+|++++|+.+|++++++     -|+++....
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            899999999999999999999999986     377766555

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.34  E-value=2e-06  Score=85.47  Aligned_cols=109  Identities=8%  Similarity=-0.090  Sum_probs=84.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---
Q 013821          239 AQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN---  302 (436)
Q Consensus       239 a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~---  302 (436)
                      ..-+..+|+|++|+..+++++++     .|++   ..++.++|.+|..+|+ |++|+.++++++++     .|+++.   
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            44456789999999999999975     3444   5678899999999875 99999999999976     355554   


Q ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHh
Q 013821          303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGDGE---IMSQYAKLVWEL  370 (436)
Q Consensus       303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~  370 (436)
                      .++++|                      .+|..+|++++|+.+|++|+++     .|+++.   ++.+|+.+...+
T Consensus       373 ~l~nLa----------------------~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          373 QVMKVG----------------------KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            456777                      8888999999999999999987     466654   445566665544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.27  E-value=0.00012  Score=74.18  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC-CCHHHH
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELH--------RDQHRALTYFERAALAAP-QDSNIL  304 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~--------~d~~~A~~~~~~al~~~p-~~~~~~  304 (436)
                      +..+-..+.+.|++++|+++|+++.+..- -+...|..+-.++...+        ++.++|.+.|++.....- -+...+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            44445666677777777777777776532 25555555554443321        126889999988877642 367777


Q ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                      ..+.                      ..|.+.|++++|.+.|++..+.. .-+..+|..+-..+.+.|+ .++|.++|++
T Consensus       109 n~lI----------------------~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-~~~A~~l~~~  165 (501)
T 4g26_A          109 TNGA----------------------RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-ADKAYEVDAH  165 (501)
T ss_dssp             HHHH----------------------HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-HHHHHHHHHH
Confidence            7777                      77888899999999999887753 2247888889999999999 9999999999


Q ss_pred             HHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821          384 AVQAS--PADSHVLAAYACFLWETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       384 al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  421 (436)
                      ..+..  | +...|..+...+.+.|+.++|.+++++..+.
T Consensus       166 M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          166 MVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            88753  4 4778899999999999999999999988765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.27  E-value=0.0002  Score=72.43  Aligned_cols=158  Identities=12%  Similarity=0.069  Sum_probs=127.3

Q ss_pred             hhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 013821          206 LIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKG---------DLYRAEDYYNHATMADP-GDGESWMQYAK  274 (436)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~~~la~  274 (436)
                      ..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+         ..++|.+.|++.....- -+..+|..+..
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~  113 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR  113 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            45678899999999999999864 226677777777766544         37899999999887643 37788899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013821          275 LVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN  353 (436)
Q Consensus       275 ~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  353 (436)
                      .|.+.++ +++|.+.|++..+.. .-+...+..+.                      ..|.+.|++++|.+.|++..+..
T Consensus       114 ~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~tyn~lI----------------------~~~~~~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A          114 LAVAKDD-PEMAFDMVKQMKAFGIQPRLRSYGPAL----------------------FGFCRKGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             HHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhcCC-HHHHHHHHHHHHHcCCCCccceehHHH----------------------HHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999875 999999999998764 23677777777                      77888999999999999988763


Q ss_pred             C-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821          354 P-GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA  387 (436)
Q Consensus       354 p-~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~  387 (436)
                      - -+...|..+..++.+.|+ .++|.+++++.-+.
T Consensus       171 ~~Pd~~ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          171 VVPEEPELAALLKVSMDTKN-ADKVYKTLQRLRDL  204 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence            2 247888999999999999 99999999998764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.11  E-value=7.4e-05  Score=61.54  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          227 EYPCHPLLLRNYAQLLQKKGDL------YRAEDYYNHATMADPGD--------GESWMQYAKLVWELHRDQHRALTYFER  292 (436)
Q Consensus       227 ~~P~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~d~~~A~~~~~~  292 (436)
                      ..|.+++.|..+.......|+.      ++-++.|++|+..-|-.        ...|..+|.. ... +|.++|.+.|+.
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~d~aR~vy~~   85 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI-QEPDDARDYFQM   85 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH-HCGGGCHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh-cCHHHHHHHHHH
Confidence            4677888888888888777887      77778888887766542        3445555533 333 346666666666


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821          293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG  357 (436)
Q Consensus       293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  357 (436)
                      ++.+....+.+|..+|                      ....++|+..+|.+.+.+|+.+.|...
T Consensus        86 a~~~hKkFAKiwi~~A----------------------qFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           86 ARANCKKFAFVHISFA----------------------QFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHHCTTBHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHHHhHHHHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            6666555666666666                      445556666666666666666666543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.05  E-value=7.5e-05  Score=61.50  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHH
Q 013821          295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL------EGAEEYFSRAILANPG--------DGEIM  360 (436)
Q Consensus       295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~  360 (436)
                      -+.|++++.|..+.                      ....+.|+.      ++-++.|++|+..-|-        ....|
T Consensus         7 ~~~p~~yd~W~~yl----------------------~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LW   64 (161)
T 4h7y_A            7 MMMANNPEDWLSLL----------------------LKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQ   64 (161)
T ss_dssp             ---CCSHHHHHHHH----------------------HHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHH
T ss_pred             eeCCCCHHHHHHHH----------------------HHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHH
Confidence            45799999999999                      555555666      7778899999888664        24566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      ..+|.. ...++ .++|...|+.++.+....+.+|...|.+..++|+...|.+.+.+++.+.|...+-..
T Consensus        65 IrYA~~-~ei~D-~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           65 VRFAEL-KAIQE-PDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHHHH-HHHHC-GGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHHHH-HHhcC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            677754 45566 999999999999998888999999999999999999999999999999887666444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.94  E-value=0.0001  Score=59.33  Aligned_cols=96  Identities=13%  Similarity=0.085  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH---HHHHHHHHHHhC-C-CCH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG---AEEYFSRAILAN-P-GDG  357 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~  357 (436)
                      ...+...|.+.+..++....+.+++|                      +++.+..+...   ++..++..++.+ | ..-
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yA----------------------w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R   74 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR   74 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence            56677777778787888888888888                      66666555544   888888887776 4 456


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      +.++.+|..++++|+ |++|+.+++..|+..|++..+......+
T Consensus        75 d~lY~LAvg~yklg~-Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            788889999999988 9999999999999999887766554433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.81  E-value=0.00022  Score=57.32  Aligned_cols=96  Identities=13%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR---AEDYYNHATMAD-P-GDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      .....+...|.+.+..++...++.+++|.++....+...   ++..++..+..+ | ...+.++.+|..+++.+. |++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh-HHHH
Confidence            445677888888888888899999999999999887766   999999988877 5 467889999999999974 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHH
Q 013821          287 LTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +.+++.+++..|++..+.....
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999988876554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.61  E-value=0.00015  Score=60.93  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=78.0

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC--------
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD---------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PA--------  390 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p~--------  390 (436)
                      ..+...|.|+.|+-....++.+..++         .+++..+|.+++..++ |.+|...|++||+..   +.        
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            55678899999999999877664322         3488999999999999 999999999998642   11        


Q ss_pred             --------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhc
Q 013821          391 --------------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVY  435 (436)
Q Consensus       391 --------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~a~~y  435 (436)
                                    +.++.+.++.|+.+++++++|+..++.+-...-........|++|
T Consensus       107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred             cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence                          126889999999999999999998776433333333344455555

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.28  E-value=0.0017  Score=54.63  Aligned_cols=107  Identities=9%  Similarity=0.045  Sum_probs=69.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821          271 QYAKLVWELHRDQHRALTYFERAALAAPQD---------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG  341 (436)
Q Consensus       271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~  341 (436)
                      .-...++..+. |+.|+-....++.+..++         ..++..+|                      .+++..++|.+
T Consensus        25 dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~la----------------------dalf~~~eyrr   81 (167)
T 3ffl_A           25 DHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHA----------------------DSLFHDKEYRN   81 (167)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH----------------------HHHHcccHHHH
Confidence            33334444443 666666666655543222         23566777                      66666677777


Q ss_pred             HHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          342 AEEYFSRAILAN-------------------------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA  396 (436)
Q Consensus       342 A~~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~  396 (436)
                      |...|++||...                         +.+.++.+.++.|+.++++ +++|+..++..-. .-..+.+..
T Consensus        82 A~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~Ip~-k~Rt~kvnm  159 (167)
T 3ffl_A           82 AVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ-DKDAIAILDGIPS-RQRTPKINM  159 (167)
T ss_dssp             HHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC-HHHHHHHHHTSCG-GGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC-HHHHHHHHhcCCc-hhcCHHHHH
Confidence            777777765441                         1224789999999999999 9999999876322 223577888


Q ss_pred             HHHHHH
Q 013821          397 AYACFL  402 (436)
Q Consensus       397 ~la~~~  402 (436)
                      .||.+|
T Consensus       160 ~LakLy  165 (167)
T 3ffl_A          160 LLANLY  165 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            888775

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.12  E-value=0.015  Score=47.40  Aligned_cols=80  Identities=11%  Similarity=0.024  Sum_probs=62.0

Q ss_pred             CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCC
Q 013821          298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHD  373 (436)
Q Consensus       298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d  373 (436)
                      .-..++.++++                      +++.+..   +..+++.+++..++..|. .-+.++.+|..++++|+ 
T Consensus        36 ~vs~~t~F~YA----------------------w~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~-   92 (144)
T 1y8m_A           36 TATIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-   92 (144)
T ss_dssp             TSCHHHHHHHH----------------------HHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC-
T ss_pred             CCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh-
Confidence            45678888888                      4554444   445788888888888884 56788899999999998 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          374 HDKALCYFERAVQASPADSHVLAAYAC  400 (436)
Q Consensus       374 ~~eA~~~~~~al~~~p~~~~~~~~la~  400 (436)
                      |.+|..+.+..|+..|++..+......
T Consensus        93 Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           93 YSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            999999999999999998776554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.07  E-value=0.0033  Score=50.73  Aligned_cols=79  Identities=11%  Similarity=0.025  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHH
Q 013821          300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~  375 (436)
                      .+.+.+++|                      +++.+..   +..+++..++..++.+|. .-+.++.+|..++++|+ |+
T Consensus        39 s~qt~F~yA----------------------w~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~   95 (134)
T 3o48_A           39 TIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YS   95 (134)
T ss_dssp             CHHHHHHHH----------------------HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HH
T ss_pred             ChhhHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HH
Confidence            567788888                      4444443   445788888888888884 47889999999999999 99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          376 KALCYFERAVQASPADSHVLAAYACF  401 (436)
Q Consensus       376 eA~~~~~~al~~~p~~~~~~~~la~~  401 (436)
                      +|..+.+..|++.|++..+......+
T Consensus        96 ~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           96 MAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            99999999999999988776554443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.95  E-value=0.028  Score=45.85  Aligned_cols=75  Identities=15%  Similarity=0.026  Sum_probs=45.9

Q ss_pred             CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          230 CHPLLLRNYAQLLQKKGDL---YRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA  305 (436)
Q Consensus       230 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~  305 (436)
                      -..++.+++|.++....+.   .+++..++..+...|. ..+.++.+|..+++++ +|.+|.++.+.+++..|++..+..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3567777777777765543   3566666666666663 4455666666666665 366666666666666666655543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.78  E-value=0.0072  Score=48.72  Aligned_cols=75  Identities=8%  Similarity=-0.047  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821          356 DGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT  430 (436)
Q Consensus       356 ~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  430 (436)
                      .+.+.+++|+++.+...  |..+++.+++..+...|.. -+.++.+|..++++|+|++|..+.+.++++.|....+..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            58899999999988755  2568999999999999854 588999999999999999999999999999999988766

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.56  E-value=0.12  Score=54.52  Aligned_cols=95  Identities=12%  Similarity=-0.066  Sum_probs=53.3

Q ss_pred             hhCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013821          209 PNFDDSAEAEE-YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL  287 (436)
Q Consensus       209 ~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~  287 (436)
                      ...+++++|.+ ++..    -| +...+...+..+...|.+++|+...+        ++...+.+   ....+ ++++|.
T Consensus       610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l~~~-~~~~A~  672 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---ALKVG-QLTLAR  672 (814)
T ss_dssp             HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HHHHT-CHHHHH
T ss_pred             HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hhhcC-CHHHHH
Confidence            34577777766 4411    01 01222556666777888887776542        22222222   23444 477777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      +..+     ..++...|..+|..+...++++.|.+.|.
T Consensus       673 ~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~  705 (814)
T 3mkq_A          673 DLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFT  705 (814)
T ss_dssp             HHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7643     33567778888877666666666665444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.017  Score=60.76  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=81.2

Q ss_pred             cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH---HHHHH
Q 013821          245 KGD-LYRAEDYYNHATMADPGDGESWMQYAKL--VWELHRDQHRALTYFERAALA--------APQDSNILA---AYACF  310 (436)
Q Consensus       245 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~---~la~~  310 (436)
                      .++ ++.|++++++..+.+|.....+. .+.+  +...+.+--+|+..+.++++.        .+.+.....   ..+.+
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            455 57889999998888887643322 2222  111122245677777666642        233332211   11111


Q ss_pred             HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      +..+-               ..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+ |+.|+-.+.-+
T Consensus       340 L~~Qa---------------~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQT---------------NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFAINSM  397 (754)
T ss_dssp             HHHHH---------------HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHS
T ss_pred             HHHHH---------------HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHHHhcC
Confidence            11111               556678999999999999999999999999999999999999 99999776653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.44  E-value=0.076  Score=48.22  Aligned_cols=122  Identities=16%  Similarity=0.036  Sum_probs=84.3

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      -+.+.|+.++|++.....++.+|.++.....+.+++.-.|++++|...++.+.+++|........+-.        .-.|
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~--------lI~a   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH--------LVKA   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH--------HHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH--------HHHH
Confidence            45677999999999999999999999999999999999999999999999999999986543222111        1111


Q ss_pred             HHHHHHHHHhC-----CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          287 LTYFERAALAA-----PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       287 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                      +..=.+++.-.     +..+..|..+.                   ++.......|+.++|...-.+|++..|.
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~l-------------------l~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSL-------------------VSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHH-------------------HHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHH-------------------HHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence            11112222211     22333333222                   1115556679999999999999888765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.40  E-value=0.081  Score=51.26  Aligned_cols=166  Identities=8%  Similarity=-0.079  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL---  304 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~---  304 (436)
                      .+.+.+|.+|...|++++-.+++......-+.-+     .....+-..+....+..+.-++.+..+++...+.-..|   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888888888888887766543322211     11112222222222223333333333333222111111   


Q ss_pred             ---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHH
Q 013821          305 ---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       305 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~  375 (436)
                         ..++                      .+|...|+|.+|.+.+.+.++--..      -.+++..-..++..+++ +.
T Consensus       100 ~l~~kL~----------------------~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-~~  156 (394)
T 3txn_A          100 SLEARLI----------------------ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-LP  156 (394)
T ss_dssp             HHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-HH
Confidence               1333                      7788889999998888888765221      14567777778888888 99


Q ss_pred             HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HCCChHHHHHHHHHHHhh
Q 013821          376 KALCYFERAVQAS---PADS----HVLAAYACFLW-ETEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       376 eA~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~~~eA~~~~~~al~l  421 (436)
                      ++...+.++....   +.++    .+...-|..+. ..++|.+|...|-.+..-
T Consensus       157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            9999998887543   1223    34455677788 789999998888887644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.14  E-value=0.093  Score=55.47  Aligned_cols=166  Identities=13%  Similarity=0.058  Sum_probs=93.8

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD  282 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d  282 (436)
                      .+...+...|.+++|+...+        ++...   .......|++++|.+..+     .-++...|..+|..+...++ 
T Consensus       634 ~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~-  696 (814)
T 3mkq_A          634 KIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN-  696 (814)
T ss_dssp             HHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC-
Confidence            34445666777777765542        22222   334577899999988754     34678899999999888874 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      ++.|+++|.++-.     ..   .+..++...++.+...++.      ......|++..|..+|.+.     .+.   ..
T Consensus       697 ~~~A~~~y~~~~d-----~~---~l~~l~~~~~~~~~~~~~~------~~a~~~~~~~~A~~~~~~~-----g~~---~~  754 (814)
T 3mkq_A          697 FKLAIEAFTNAHD-----LE---SLFLLHSSFNNKEGLVTLA------KDAETTGKFNLAFNAYWIA-----GDI---QG  754 (814)
T ss_dssp             HHHHHHHHHHHTC-----HH---HHHHHHHHTTCHHHHHHHH------HHHHHTTCHHHHHHHHHHH-----TCH---HH
T ss_pred             HHHHHHHHHHccC-----hh---hhHHHHHHcCCHHHHHHHH------HHHHHcCchHHHHHHHHHc-----CCH---HH
Confidence            9999999998622     11   1222222233333322222      3334455555555444331     111   11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHH
Q 013821          363 YAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDD  411 (436)
Q Consensus       363 la~~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA  411 (436)
                      ...+|...++ +++|+.+-++   ..|..   ..+...++.-+...|+.+.|
T Consensus       755 a~~~~~~~~~-~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          755 AKDLLIKSQR-FSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHcCC-hHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence            1234555667 7777776554   44443   25566666667777765433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.059  Score=56.63  Aligned_cols=60  Identities=10%  Similarity=0.027  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821          358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  418 (436)
                      ..+..-+..+...|+ ++-|+.+-++|+...|.....|..|+.+|..+|+++.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~-~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGD-YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCc-HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            455666777788888 999999999999999999999999999999999999998766544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.4  Score=40.73  Aligned_cols=100  Identities=11%  Similarity=0.054  Sum_probs=60.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      ....|+++.|.+..+..     ++...|..+|......++ ++-|+.+|+++-     +...   +.             
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn-~~lAe~cy~~~~-----D~~~---L~-------------   67 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN-ASLAEMIYQTQH-----SFDK---LS-------------   67 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC-HHHHHHHHHHTT-----CHHH---HH-------------
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHhC-----CHHH---HH-------------
Confidence            35678888887776654     567778888877777764 777777777652     1111   11             


Q ss_pred             HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821          322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~  383 (436)
                               .+|.-.|+.++-...-+.+......     ..-..+++.+|+ +++++++|.+
T Consensus        68 ---------~Ly~~tg~~e~L~kla~iA~~~g~~-----n~af~~~l~lGd-v~~~i~lL~~  114 (177)
T 3mkq_B           68 ---------FLYLVTGDVNKLSKMQNIAQTREDF-----GSMLLNTFYNNS-TKERSSIFAE  114 (177)
T ss_dssp             ---------HHHHHHTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHTC-HHHHHHHHHH
T ss_pred             ---------HHHHHhCCHHHHHHHHHHHHHCccH-----HHHHHHHHHcCC-HHHHHHHHHH
Confidence                     4455566666555554444433211     222334566788 8888888865

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.73  E-value=0.76  Score=38.54  Aligned_cols=44  Identities=7%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             HHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          382 ERAVQASPADS-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       382 ~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      ++....-|.-+ ......+.-|+.+|-.++...+|......+|.|
T Consensus       197 kkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          197 KKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF  241 (242)
T ss_dssp             HHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence            33334456544 344667778888999999999999888888876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.58  E-value=0.36  Score=46.69  Aligned_cols=86  Identities=12%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          334 QSKGDLEGAEEYFSRAILANPG--------D--------------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       334 ~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                      ...|+.+.|...+.+|+.+...        .              ..+...++..+...|+ +.+|+..+.+++..+|-+
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~-~~~a~~~l~~~~~~~P~~  204 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAELEALTFEHPYR  204 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence            3468899999999999887421        1              1234456667788899 999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          392 SHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      -.+|..+..++...|+..+|++.|+++..
T Consensus       205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          205 EPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999988655

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.36  E-value=0.19  Score=45.68  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HH-----------
Q 013821          332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL---AA-----------  397 (436)
Q Consensus       332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~---~~-----------  397 (436)
                      .+.+.|++++|++.....++.+|.|......+-.+++-.|+ +++|.+-++.+.+++|+.....   ..           
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~-w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v   84 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   84 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence            35578999999999999999999999999999999999999 9999999999999998864221   11           


Q ss_pred             ---------------------HHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          398 ---------------------YACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       398 ---------------------la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                                           -+......|+.++|...-.++++..|...+
T Consensus        85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G  135 (273)
T 1zbp_A           85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  135 (273)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence                                 122234468888888888888888776544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.32  E-value=0.3  Score=47.31  Aligned_cols=60  Identities=8%  Similarity=0.015  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~  347 (436)
                      +...++..+...+ ++.+|+..+++++..+|-+..++..+.                      .++...|+..+|++.|+
T Consensus       173 a~~~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm----------------------~al~~~Gr~~~Al~~y~  229 (388)
T 2ff4_A          173 AHTAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLI----------------------TAYYLSDRQSDALGAYR  229 (388)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHH
Confidence            3444566666666 499999999999999999999999998                      66666666666666666


Q ss_pred             HHH
Q 013821          348 RAI  350 (436)
Q Consensus       348 ~al  350 (436)
                      ++-
T Consensus       230 ~~r  232 (388)
T 2ff4_A          230 RVK  232 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.35  Score=41.05  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=41.5

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA  258 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a  258 (436)
                      +....|+++.|.++.+..     ++...|..+|......|+++-|+++|+++
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            345679999999988765     67899999999999999999999999876

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.65  E-value=0.23  Score=49.72  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      .+......+..|..+|.+|+.+.|+++..++.||.+....|+ .-+|+-+|.+++......+.+..++..++.+
T Consensus       160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~-~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc-cHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            666777889999999999999999999999999999999998 8999999999998776678888887777654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.63  E-value=0.14  Score=51.24  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ....+|.+......+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++-.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4456777777777777888888888888887778888888888777777778877777777666667777777665443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.49  E-value=1.8  Score=44.44  Aligned_cols=86  Identities=9%  Similarity=0.057  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821          339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF  418 (436)
Q Consensus       339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  418 (436)
                      ..++..++.++.....+ ......++......|+ +..|..+|.+.-..........+.+|.++..+|+.++|..+|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d-~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~  345 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL  345 (618)
T ss_dssp             CHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCC-HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55677777776654443 3344444444556677 999999998754433345778899999999999999999999998


Q ss_pred             HhhCCCChh
Q 013821          419 QQVAPIRQG  427 (436)
Q Consensus       419 l~l~p~~~~  427 (436)
                      .. ...|.+
T Consensus       346 a~-~~~fYg  353 (618)
T 1qsa_A          346 MQ-QRGFYP  353 (618)
T ss_dssp             HT-SCSHHH
T ss_pred             hc-CCChHH
Confidence            76 345544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.37  E-value=0.49  Score=51.15  Aligned_cols=98  Identities=8%  Similarity=-0.138  Sum_probs=82.6

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMID-----EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQY  272 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  272 (436)
                      ..+..+=..+++.|+.++|..+|+++.+     ..| +...|..+...|.+.|+.++|.+.|++..+..- -|...|..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            5677778899999999999999987653     345 788999999999999999999999999988643 377888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          273 AKLVWELHRDQHRALTYFERAALAA  297 (436)
Q Consensus       273 a~~~~~~~~d~~~A~~~~~~al~~~  297 (436)
                      -.++.+.++..++|.++|++..+..
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            8888888765688999999988765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.22  E-value=0.43  Score=46.17  Aligned_cols=166  Identities=10%  Similarity=-0.013  Sum_probs=105.3

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC--HH---
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGD--GE---  267 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--~~---  267 (436)
                      .+...+|.+|...|++++-..++......-+.-+     .....+-..+.. .+..+.-++.+..+++-....  ..   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888887776655433222     222233333322 345566666666666543222  11   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          268 -SWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DS----NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       268 -~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                       .-..+|.+|+..+ +|.+|.+.+.+.++--..  +.    +++..-.                      .+|...+++.
T Consensus       100 ~l~~kL~~l~~~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~----------------------~~~~~~~n~~  156 (394)
T 3txn_A          100 SLEARLIALYFDTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLES----------------------KTYHALSNLP  156 (394)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHH----------------------HHHHHhccHH
Confidence             2337899998887 599999999988874322  21    1111222                      7788889999


Q ss_pred             HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhC
Q 013821          341 GAEEYFSRAILAN---PGDG----EIMSQYAKLVW-ELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       341 ~A~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~d~~eA~~~~~~al~~~  388 (436)
                      ++...|.+|....   +.++    .....-|.++. ..++ |.+|...|-.++...
T Consensus       157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd-yk~A~~~F~eaf~~f  211 (394)
T 3txn_A          157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERD-FKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccC-HHHHHHHHHHHHhcc
Confidence            9999998887653   1223    34555666777 6777 999999998887543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.57  E-value=0.59  Score=39.22  Aligned_cols=91  Identities=9%  Similarity=-0.060  Sum_probs=61.5

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------------CCCCHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA-----------------SPADSH  393 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----------------~p~~~~  393 (436)
                      .+++-.|.|..++-.+.     .-+.....+.-+.|+..+++ |..|+..++..++-                 +|.+.+
T Consensus        41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKd-YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE  114 (242)
T 3kae_A           41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKD-YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE  114 (242)
T ss_dssp             HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred             hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence            56666777777765442     23445666777777777777 88888888877731                 233333


Q ss_pred             -HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          394 -VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       394 -~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                       .+..+|.++.+.|+.++|+.+|......+|-|..
T Consensus       115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence             4566778888888888888888887777766543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.51  E-value=1.7  Score=48.30  Aligned_cols=100  Identities=13%  Similarity=0.053  Sum_probs=70.0

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHcC
Q 013821          225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----------------------DPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~  281 (436)
                      +..-|.++..-+.+|.++...|++++|..+|+++-.-                       ....+..|.....++...+ 
T Consensus       835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~-  913 (1139)
T 4fhn_B          835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES-  913 (1139)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS-
T ss_pred             hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC-
Confidence            3455777777899999999999999999999887321                       0112345566666655554 


Q ss_pred             CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHccCchHHHHHHH
Q 013821          282 DQHRALTYFERAALAAPQ-DSN----ILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~-~~~----~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                      -++.+++..+.|++..+. +..    .|.++-.....++++++|-..+.
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            589999999999987654 332    56667766777777777766553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.44  E-value=2.8  Score=45.44  Aligned_cols=97  Identities=11%  Similarity=-0.109  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAY  307 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~l  307 (436)
                      ..|..+-..|.+.|+.++|..+|....+.    -.-+...|..+...|++.|+ +++|.+.|++..+.. .-|...+..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            56888999999999999999999775432    34478899999999999986 999999999998775 3377888888


Q ss_pred             HHHHHHccCc-hHHHHHHHHHHHH
Q 013821          308 ACFLWEMEDD-GEDDKAQEEHIQV  330 (436)
Q Consensus       308 a~~~~~~g~~-~~A~~~~~~~~~~  330 (436)
                      ..++.+.|+. ++|.++++++...
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHc
Confidence            8889998885 6788899888887

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.99  E-value=1.1  Score=44.01  Aligned_cols=97  Identities=9%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMAD-P-GD----GESWMQYAKLVWELHRDQHRALTYFERAAL---AAPQDSNI  303 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~----~~~~~~la~~~~~~~~d~~~A~~~~~~al~---~~p~~~~~  303 (436)
                      .....|+.+|...|++.+|...+.....-. . .+    .+++.....++...+ |+.+|...+.++..   ..+..+..
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~-d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG-DYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhcccCCcHHH
Confidence            456789999999999999999999886431 1 11    467777888888876 69999999998742   23334332


Q ss_pred             ----HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821          304 ----LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA  352 (436)
Q Consensus       304 ----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  352 (436)
                          +...|                      .++...++|.+|..+|..++..
T Consensus       217 k~~~~~~~~----------------------~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLV----------------------KISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHH----------------------HHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHhc
Confidence                23334                      7777888999998888888765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.63  E-value=0.51  Score=46.30  Aligned_cols=103  Identities=13%  Similarity=0.047  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADP---GDGESWMQYAKLVWELHRDQHRALTYFERAALAAP--QDSNILAAY  307 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p--~~~~~~~~l  307 (436)
                      .++..+|..|...|++++|.+.|.++.....   .-.+.+.....++...+ |+..+..++.++-....  .+......+
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            5677888888888888888888888776532   23566777777777765 58888888888865532  222222111


Q ss_pred             HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP  354 (436)
Q Consensus       308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  354 (436)
                         ....|               .++...++|.+|..+|..++....
T Consensus       211 ---k~~~g---------------l~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 ---KTYYG---------------IHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             ---HHHHH---------------HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             ---HHHHH---------------HHHHHhChHHHHHHHHHHHhccCC
Confidence               11111               556678899999999988876643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.42  E-value=11  Score=36.77  Aligned_cols=52  Identities=10%  Similarity=0.083  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          212 DDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP  263 (436)
Q Consensus       212 g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  263 (436)
                      |++++|++.+...-+.      .+....+...+..++...++++...+++.-..+...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~   87 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG   87 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence            6778888777544432      133467888899999999999998887765544433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.22  E-value=0.43  Score=46.86  Aligned_cols=100  Identities=13%  Similarity=0.024  Sum_probs=76.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----H
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--PC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PGDGE----S  268 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~  268 (436)
                      ..++..+|..+++.|++++|.+.|.++....  +. -.+.++....++...+++..+..++.++-...  ..++.    .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            3578899999999999999999999998853  33 34888999999999999999999999997652  22322    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821          269 WMQYAKLVWELHRDQHRALTYFERAALAAP  298 (436)
Q Consensus       269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p  298 (436)
                      ....|.++... ++|.+|...|-.++.-..
T Consensus       211 k~~~gl~~l~~-r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAV-RNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGT-SCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHh-ChHHHHHHHHHHHhccCC
Confidence            23344444444 469999999998877653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.55  E-value=0.61  Score=46.52  Aligned_cols=125  Identities=11%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHh---
Q 013821          241 LLQKKGDLYRAEDYYNHATM---A--------DPGDGESWMQYAKLVWELHRDQHRA----------LTYFERAALA---  296 (436)
Q Consensus       241 ~~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~~~d~~~A----------~~~~~~al~~---  296 (436)
                      .++..+++++|.++-...+.   +        ++-.+.+|+.++.++...+. ....          ...+-.+++.   
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~-~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLAR-SSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcc-cccccccccchhhHHHHHHHHHHHHhc
Confidence            34578899999888776651   1        33345566666666555543 3332          1222222222   


Q ss_pred             --CCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Q 013821          297 --APQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-------GEIMSQYAKL  366 (436)
Q Consensus       297 --~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~  366 (436)
                        ++.. ...+..+-                      +.|...+.|++|..+..++.  .|..       ...++++|++
T Consensus       224 r~D~~~qa~l~nllL----------------------RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI  279 (523)
T 4b4t_S          224 KHDNETKAMLINLIL----------------------RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKI  279 (523)
T ss_dssp             CSSSCHHHHHHHHHH----------------------HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHHHHHHH----------------------HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHH
Confidence              1221 22223333                      77888899999999988884  4432       4567788999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          367 VWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       367 ~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                      +.-+++ |.+|.+++..|+...|.+
T Consensus       280 ~a~q~~-Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          280 NAIQLD-YSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHTTC-HHHHHHHHHHHTSSCSCS
T ss_pred             HHHhcc-HHHHHHHHHHHHHhCCcc
Confidence            999999 999999999999877754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.40  E-value=9.5  Score=39.08  Aligned_cols=51  Identities=8%  Similarity=0.044  Sum_probs=25.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      ..+..+...|. ...|...+..++...  +..-...++.+....|.++.++...
T Consensus       386 ~r~~~L~~~g~-~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~  436 (618)
T 1qsa_A          386 ARVRELMYWNL-DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT  436 (618)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence            33445555565 556655555544321  1233344455555555555555433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.11  E-value=4.2  Score=45.04  Aligned_cols=161  Identities=11%  Similarity=-0.036  Sum_probs=90.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHc
Q 013821          238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQD--SNILAAYACFLWEM  314 (436)
Q Consensus       238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~  314 (436)
                      +...+...+.++-|.+    .+...|.++...+.+|.++...++ +++|..+|+++...- .++  ......+..+... 
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge-~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~-  891 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK-  891 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT-
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccchhhhhhccccccccc-
Confidence            4444555666655443    344567777778888988888874 999999998873211 110  0000000000000 


Q ss_pred             cCchHHH-HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          315 EDDGEDD-KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DG----EIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       315 g~~~~A~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                      ....... ..|...+  .++.+.+.++.+++..+.|++..+. +.    ..|.++=.....+|+ |++|...+...=. .
T Consensus       892 ~~~~~~l~~YY~hv~--~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL~~~pd-~  967 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLS--KKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK-FDAAHVALMVLST-T  967 (1139)
T ss_dssp             TTSCCSSHHHHHHHH--HHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHHHHHHH-S
T ss_pred             ccccccHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHHHhCCC-H
Confidence            0000000 0111111  6777889999999999999988653 33    256777777888999 9999877754321 2


Q ss_pred             CCCHHHHHHHHHHHHHCCCh
Q 013821          389 PADSHVLAAYACFLWETEED  408 (436)
Q Consensus       389 p~~~~~~~~la~~~~~~g~~  408 (436)
                      ......+..+...+++.|..
T Consensus       968 ~~r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          968 PLKKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             SSCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHhCCCh
Confidence            22334555555555554443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.86  E-value=0.26  Score=49.21  Aligned_cols=132  Identities=10%  Similarity=0.004  Sum_probs=54.6

Q ss_pred             hhhhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHh----
Q 013821          207 IMPNFDDSAEAEEYYKRMID-----------EYPCHPLLLRNYAQLLQKKGDLYRAE----------DYYNHATMA----  261 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~-----------~~P~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----  261 (436)
                      .++..+++++|.++-...+.           +++-.+.+|+.++.++...|+.....          ..+-.++..    
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            44556788888777665541           23445678888888888888776532          223233322    


Q ss_pred             -CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821          262 -DPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL  339 (436)
Q Consensus       262 -~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~  339 (436)
                       ++. .+..+..+-..|...+ .|++|..+..++.  .|........++..++..|               .++.-+++|
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~G---------------RI~a~q~~Y  286 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLS---------------KINAIQLDY  286 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHH---------------HHHHHTTCH
T ss_pred             cCcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHH---------------HHHHHhccH
Confidence             232 3556777777777776 5999999999985  4432111112222222233               888999999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 013821          340 EGAEEYFSRAILANPGD  356 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~  356 (436)
                      .+|.+++..|++..|.+
T Consensus       287 ~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          287 STANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            99999999999987754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=86.54  E-value=6  Score=42.51  Aligned_cols=123  Identities=11%  Similarity=0.023  Sum_probs=66.7

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---C---HP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-  266 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  266 (436)
                      +++..++|.++...++  +++.++...+..+.   .   +.    .+-..+|.++.-.++ +++.+.+...+..+.... 
T Consensus       413 ~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~  489 (963)
T 4ady_A          413 GGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG  489 (963)
T ss_dssp             HHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence            4778888888877664  67888887776542   0   11    344566666665555 456666666666443211 


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821          267 -ESWMQYAKLVWELHRDQHRALTY-FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE  325 (436)
Q Consensus       267 -~~~~~la~~~~~~~~d~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  325 (436)
                       .+-+.+|.++...+.  .+|++. ++.+.+-..++..-...+|..+...|+.+.+..+++
T Consensus       490 ~~AalALGli~vGTgn--~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~  548 (963)
T 4ady_A          490 EAAALGMGLCMLGTGK--PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLIT  548 (963)
T ss_dssp             HHHHHHHHHHHTTCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHH
T ss_pred             HHHHHHHhhhhcccCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHH
Confidence             234455655555543  344443 333343222222222334444556677666665554

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=85.63  E-value=20  Score=32.17  Aligned_cols=43  Identities=12%  Similarity=-0.079  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKL  275 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~  275 (436)
                      .-+..+|.+..+.++|++.+++.+++.+.++. ..+-...+..+
T Consensus        32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvA   75 (261)
T 3ubw_A           32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVA   75 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            44556666666777777777777777666655 33333444433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.97  E-value=29  Score=32.05  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=17.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821          355 GDGEIMSQYAKLVWELHHDHDKALCYFE  382 (436)
Q Consensus       355 ~~~~~~~~la~~~~~~g~d~~eA~~~~~  382 (436)
                      .+++.+..+|..++..|+ +.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~-~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDF-VYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCC-HHHHHHHHH
Confidence            356667777777776666 766666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	436
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-07
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-07
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.003
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	7e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.001
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 24/210 (11%)

Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
           P F DA   +  ++        A   Y R +   P H ++  N A +  ++G +  A D 
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259

Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
           Y  A    P   +++   A  + E       A   +  A    P  ++ L   A    E 
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
                                 G++E A   + +A+   P      S  A ++ +     
Sbjct: 319 ----------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKL 355

Query: 375 DKALCYFERAVQASPADSHVLAAYACFLWE 404
            +AL +++ A++ SP  +   +     L E
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 24/216 (11%)

Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
           P F  A   +  +     +   A  ++++ +   P       N   +L++     RA   
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
           Y  A    P         A + +E       A+  + RA    P   +     A  L E 
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLID-LAIDTYRRAIELQPHFPDAYCNLANALKEK 284

Query: 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
               E                      AE+ ++ A+   P   + ++  A +  E   + 
Sbjct: 285 GSVAE----------------------AEDCYNTALRLCPTHADSLNNLANIKREQG-NI 321

Query: 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410
           ++A+  + +A++  P  +   +  A  L +  + ++
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 12/227 (5%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D   AE +  ++  + P +  +L   + +  +   L R+  +   A   +P   E++   
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 273 AKL-----------VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321
             +               H  + +         LAA   +      A   +        D
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381
                      +++ G LE A+  + +AI   P      S    +          A+ +F
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHF 192

Query: 382 ERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428
           E+AV   P            L E    +    +  +   ++P     
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-09
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
           P F DA   +   +      AEAE+ Y   +   P H   L N A + +++G++  A   
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327

Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
           Y  A    P    +    A ++ +  + Q  AL +++ A   +P  ++  +     L EM
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQ-EALMHYKEAIRISPTFADAYSNMGNTLKEM 386

Query: 315 ED 316
           +D
Sbjct: 387 QD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395
            GD E AE +  +     P +  ++   + + ++     D++  +   A++ +P  +   
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 396 AAYACFLW 403
           +       
Sbjct: 71  SNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298
           A    + GD   AE +       +P +    +  + + ++  R   R+  +   A    P
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQNP 64

Query: 299 QDSNILAAYACFLWEM 314
             +   +       E 
Sbjct: 65  LLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 30/259 (11%), Positives = 68/259 (26%), Gaps = 46/259 (17%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH--------------- 257
               +  +    I + P       N   + +++G L  A ++Y H               
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

Query: 258 ------------------ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299
                             + +    D          + +       A   + +A    P 
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP------------IQSKGDLEGAEEYFS 347
            +   +   C      +        E+ + + P            ++     + A   + 
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407
           RA+  +P    +    A + +E     D A+  + RA++  P         A  L E   
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 408 DEDDSKSSDQFQQVAPIRQ 426
             +     +   ++ P   
Sbjct: 287 VAEAEDCYNTALRLCPTHA 305

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 60.8 bits (147), Expect = 5e-11
 Identities = 21/152 (13%), Positives = 35/152 (23%), Gaps = 22/152 (14%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
              +A E     I   P    L  ++ +LL   GD  RA++    +    P       Q 
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
             LV      +  A        L   ++                                
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS------------------ 112

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364
                D E   E   +        G + +  +
Sbjct: 113 ----QDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
           S+G L+ A E    AI A+P D  + S + +L+     D ++A     ++++  P     
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-GDFERADEQLMQSIKLFPEYLPG 66

Query: 395 LAAYACFLWETEEDED 410
            +     +   +  +D
Sbjct: 67  ASQLRHLVKAAQARKD 82

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 22/144 (15%)

Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
           AL     A  A+P+D+++ +++   L                         GD E A+E 
Sbjct: 15  ALELLIEAIKASPKDASLRSSFIELLCID----------------------GDFERADEQ 52

Query: 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405
             ++I   P      SQ   LV       D A       V     +             +
Sbjct: 53  LMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS 112

Query: 406 EEDEDDSKSSDQFQQVAPIRQGAV 429
           ++ E  S+ + Q +++   +    
Sbjct: 113 QDYEQVSELALQIEELRQEKGFLA 136

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 22/220 (10%), Positives = 49/220 (22%), Gaps = 48/220 (21%)

Query: 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW---- 269
           S ++ +Y ++               A++   +  L   +D Y    + D           
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQ 58

Query: 270 ------------------------------MQYAKLVWELHRDQHRALTYFERAALAAPQ 299
                                            +  +        + L            
Sbjct: 59  DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118

Query: 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS----------KGDLEGAEEYFSRA 349
                +       +        K Q      +              +     AE Y+  A
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHA 178

Query: 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
               P +G+  +Q A ++     DH   + Y+ R++    
Sbjct: 179 AQLVPSNGQPYNQLA-ILASSKGDHLTTIFYYCRSIAVKF 217

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 21/185 (11%), Positives = 39/185 (21%), Gaps = 30/185 (16%)

Query: 197 FDDAGEVVDLIMPNFDDSAEAEEY-----YKRMIDEYPCHPLLLRN---YAQLLQKKGDL 248
             D  + + +    +    + E+      +K  I           N             L
Sbjct: 36  LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL 95

Query: 249 YRAEDYYNHATMA-------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301
             A  +Y             D        Q   ++          +     +     Q  
Sbjct: 96  EAASGFYTQLLQELCTVFNVDLPCRVKSSQLG-IISNKQTHTSAIVKPQSSSCSYICQHC 154

Query: 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLP------------IQSKGDLEGAEEYFSRA 349
             L              + +       Q++P              SKGD      Y+ R+
Sbjct: 155 --LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

Query: 350 ILANP 354
           I    
Sbjct: 213 IAVKF 217

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 25/200 (12%), Positives = 52/200 (26%), Gaps = 27/200 (13%)

Query: 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH------------ 284
           N  +   +     R    Y    +      + W + A+ + +  +               
Sbjct: 21  NPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 80

Query: 285 -RALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK------ 336
             A   +ERA      ++  +  AYA +        +        + +  I         
Sbjct: 81  DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY 140

Query: 337 -------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
                    ++     F +A         +    A + +    D   A   FE  ++   
Sbjct: 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG 200

Query: 390 ADSHVLAAYACFLWETEEDE 409
                + AY  +L    ED 
Sbjct: 201 DIPEYVLAYIDYLSHLNEDN 220

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 21/158 (13%)

Query: 267 ESWMQYAKLVWELH---------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD 317
           + W +Y +  WE               R +  +E+  L      +I    A +L +    
Sbjct: 9   DMWKKYIQ--WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66

Query: 318 GEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDK 376
             +              +K   + A   + RAI      +  +   YA    E    ++K
Sbjct: 67  LAEKGDMNN--------AKLFSDEAANIYERAISTLLKKNMLLYFAYADYE-ESRMKYEK 117

Query: 377 ALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414
               + R +     D  ++           E     + 
Sbjct: 118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 18/193 (9%), Positives = 44/193 (22%), Gaps = 11/193 (5%)

Query: 206 LIMPNFDDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264
           L      + A   E   R ++                 Q          + +     +  
Sbjct: 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176

Query: 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY--------ACFLWEMED 316
           +  SW   + L+ +LH     +            ++  ++           + + +    
Sbjct: 177 NYSSWHYRSCLLPQLHPQP-DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235

Query: 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376
            G  +      + V           + +        N      +    + +  L     +
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKE 294

Query: 377 ALCYFERAVQASP 389
            L YF       P
Sbjct: 295 TLQYFSTLKAVDP 307

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 30/173 (17%), Positives = 47/173 (27%), Gaps = 12/173 (6%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
              EA   Y R I   P   +   N A    K     +A      A   D    ++    
Sbjct: 19  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
            +   E+      A+   +RA   A +              +      +  +E  I    
Sbjct: 79  GQCQLEMESYD-EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQES 137

Query: 333 I-------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
                       + E   E   R    +  DG I +Q A     +   HDK +
Sbjct: 138 ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQA----CIEAKHDKYM 186

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 23/183 (12%), Positives = 39/183 (21%), Gaps = 23/183 (12%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
           L+     L        A   Y  A   +P     +   A    ++ + +           
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA--------- 57

Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
                        A     +E DG+  KA     Q          + A     RA     
Sbjct: 58  ------------LADCRRALELDGQSVKAHFFLGQCQ--LEMESYDEAIANLQRAYSLAK 103

Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414
                          +            R  Q S   S++    A       E+   +  
Sbjct: 104 EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHE 163

Query: 415 SDQ 417
             +
Sbjct: 164 GHE 166

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/165 (10%), Positives = 42/165 (25%), Gaps = 8/165 (4%)

Query: 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278
           E ++    E      +++    +  K G   +A   Y         +     + +K    
Sbjct: 2   ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS-- 59

Query: 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD 338
              +      +   A           A   C      D       +  + +        +
Sbjct: 60  ---ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS---ANEKGLYRRGEAQLLMNE 113

Query: 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383
            E A+  F + +  NP +     Q      +    +++    +  
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYAN 158

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 13/169 (7%)

Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
           +D+    +   +++         L+N      K  +   A   Y        G   +   
Sbjct: 11  EDADVDLKDVDKILLISE----DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66

Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
                 +L       +       L        + +    L     + +    + +  Q L
Sbjct: 67  ADGA--KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL 124

Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL--HHDHDKAL 378
                 + + A     +A    P D  I ++  K+  ++    D +KA 
Sbjct: 125 K-----EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 24/209 (11%), Positives = 58/209 (27%), Gaps = 9/209 (4%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           D   A   ++  + + P H    +       +      A        +    D ++ +  
Sbjct: 34  DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC-LELKPDNQTALMA 92

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
             + +     Q +A           P  ++++                            
Sbjct: 93  LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS------- 145

Query: 333 IQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
           + S       +E F  A+ L        +     +++ L  ++DKA+  F  A+   P D
Sbjct: 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 205

Query: 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420
             +       L    + E+   +  +  +
Sbjct: 206 YLLWNKLGATLANGNQSEEAVAAYRRALE 234

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 11/174 (6%)

Query: 214 SAEAEEYYKRMID-EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
           SA  ++ Y+   +     HP           ++GDL  A   +  A   DP   E+W   
Sbjct: 1   SATYDKGYQFEEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL 59

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
                E  ++    ++   R     P +   L A A          +  +   + ++  P
Sbjct: 60  GTTQAENEQELLA-ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 118

Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
                         + A     G G   S+             +    F  AV+
Sbjct: 119 AY--------AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 15/97 (15%), Positives = 31/97 (31%)

Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
           N + S EA   Y+R ++  P +     N        G    A +++  A           
Sbjct: 218 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277

Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306
            +   +   +      AL+   ++      D+  L+ 
Sbjct: 278 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
           ++       KK ++  A   Y  A         +     +++ +  ++   +        
Sbjct: 20  IKEEGNEFFKKNEINEAIVKYKEALDFFI---HTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
               +D       A          + +  +  +   +     G LE A+E   +A   NP
Sbjct: 77  YNKNKDYP----KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132

Query: 355 GDGEIMSQYAKLVWEL 370
            + +I + Y   V +L
Sbjct: 133 NNLDIRNSYELCVNKL 148

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 16/152 (10%), Positives = 41/152 (26%), Gaps = 8/152 (5%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
           ++    +  K+G   +A   Y         +     + A+    L     R  ++   A 
Sbjct: 16  VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL-----RLASHLNLAM 70

Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
                 +      A        + + +  +    +     +  D E A   F + +   P
Sbjct: 71  CHLKLQAFS---AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127

Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
            +    +Q A     +     +    +    +
Sbjct: 128 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 22/193 (11%), Positives = 45/193 (23%), Gaps = 16/193 (8%)

Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
             A A   + + +   P  P +       L + G+ + A      + +            
Sbjct: 52  LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-FDAAYEAFDSVLELDPTYNYAHLN 110

Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED--------------DG 318
             +          A           P D            ++++              D 
Sbjct: 111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170

Query: 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
           E          +  I  +  +E  +   +          E      K  +    D D A 
Sbjct: 171 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK-YYLSLGDLDSAT 229

Query: 379 CYFERAVQASPAD 391
             F+ AV  +  +
Sbjct: 230 ALFKLAVANNVHN 242

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 12/132 (9%), Positives = 32/132 (24%), Gaps = 23/132 (17%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
           L+         G++  A   Y+ A   DP +   +   +    +    Q           
Sbjct: 6   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA--------- 56

Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
                                 D + D  +    +   ++     E A+  +   +    
Sbjct: 57  --------------YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 102

Query: 355 GDGEIMSQYAKL 366
            + ++      +
Sbjct: 103 NNPQLKEGLQNM 114

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
            A ++Y +  +  P +   + N A +  +KGD  +  +    A      + E + Q AK 
Sbjct: 22  TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81

Query: 276 VWELHR------DQHRALTYFERAALAAPQDSNILAAY 307
              +            A+ ++ + +LA  +  ++L   
Sbjct: 82  YARIGNSYFKEEKYKDAIHFYNK-SLAEHRTPDVLKKC 118

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 12/126 (9%), Positives = 30/126 (23%), Gaps = 22/126 (17%)

Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY--AKLVWELHRDQHRALTYFER 292
           +      L    DL + E  +     A      +  +Y    +    + D  + +   E 
Sbjct: 2   MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61

Query: 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352
                 ++      +   +                          + E A +Y    +  
Sbjct: 62  LLPKGSKEEQRDYVFYLAVGNYRLK--------------------EYEKALKYVRGLLQT 101

Query: 353 NPGDGE 358
            P + +
Sbjct: 102 EPQNNQ 107

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 24/180 (13%), Positives = 46/180 (25%), Gaps = 14/180 (7%)

Query: 210 NFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264
           N  +  EAE   K  ++E P        +      ++L  KG+L R+             
Sbjct: 24  NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE----- 78

Query: 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
             +   Q+    + L     ++   F +  L    ++   A       E   +       
Sbjct: 79  --QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI--NEQHLEQLPMHEF 134

Query: 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384
              I+   + +   L+ AE      I                +          L      
Sbjct: 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.73
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.52
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.47
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.45
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.45
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.08
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.05
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.04
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.77
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.18
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.02
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.69
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.55
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.33
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	92.76
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.21
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	89.95
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	81.34

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-26  Score=222.68  Aligned_cols=255  Identities=14%  Similarity=0.106  Sum_probs=194.3

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++++|...+..++..++ .+..+|..+|.++...|++++|+.+|+++++.+|+++.+|..+|.++..+|++++|+..+.+
T Consensus        14 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~   92 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH   92 (388)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccc
Confidence            44577788888888888 78889999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHhCCCC--------------------------------------------------------------------HHHH
Q 013821          258 ATMADPGD--------------------------------------------------------------------GESW  269 (436)
Q Consensus       258 al~~~p~~--------------------------------------------------------------------~~~~  269 (436)
                      ++..+|..                                                                    +.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
T d1w3ba_          93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHH
Confidence            77665543                                                                    4556


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcC
Q 013821          270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKG  337 (436)
Q Consensus       270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g  337 (436)
                      ..+|.++...+ ++++|...++++++.+|++..++..+|.++...|++++|+..+.+....            .++...|
T Consensus       173 ~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  251 (388)
T d1w3ba_         173 SNLGCVFNAQG-EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             HHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HhhcccccccC-cHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCC
Confidence            66676666665 4888888888888888888888888888888888888888877755554            4555566


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH----------------------------------HHHHHHhcCCHHHHHHHHHH
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQY----------------------------------AKLVWELHHDHDKALCYFER  383 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~l----------------------------------a~~~~~~g~d~~eA~~~~~~  383 (436)
                      ++++|+..|+++++++|+++.++..+                                  |.++...|+ +++|+.+|++
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~  330 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRK  330 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC-HHHHHHHHHH
Confidence            66666666666666655555555544                                  455555566 7777777777


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013821          384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY  435 (436)
Q Consensus       384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~y  435 (436)
                      +++++|+++.++..+|.++..+|++++|+..|+++++++|++..+.. .+++|
T Consensus       331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            77777887888888888888888888888888888888887776544 45444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-26  Score=219.34  Aligned_cols=228  Identities=11%  Similarity=0.043  Sum_probs=199.2

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..+...|..++..|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...|..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHH---------------HHHHHHHHccCchHHHHHHHHHHHH-------------
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILA---------------AYACFLWEMEDDGEDDKAQEEHIQV-------------  330 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~---------------~la~~~~~~g~~~~A~~~~~~~~~~-------------  330 (436)
                      .++ +++|++.+++++...|.....+.               .....+...+.+.++...+.+.+..             
T Consensus       100 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_         100 ESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             TTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccc-ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            875 99999999999999887433221               1112233344556666666655543             


Q ss_pred             -hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821          331 -LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE  409 (436)
Q Consensus       331 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  409 (436)
                       .++...|++++|+.+|++++..+|+++.+|..+|.++..+|+ +++|+.+|+++++++|+++.++..+|.++.++|+++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence             678899999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChhH
Q 013821          410 DDSKSSDQFQQVAPIRQGA  428 (436)
Q Consensus       410 eA~~~~~~al~l~p~~~~~  428 (436)
                      +|+..|++++++.|+...+
T Consensus       258 ~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         258 EAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhCCcChhh
Confidence            9999999999998876553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-25  Score=211.26  Aligned_cols=222  Identities=16%  Similarity=0.134  Sum_probs=208.6

Q ss_pred             HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD  262 (436)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  262 (436)
                      ...+...+...+ ..+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+
T Consensus       155 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  233 (388)
T d1w3ba_         155 KACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS  233 (388)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh
Confidence            344445555556 6778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------
Q 013821          263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------  330 (436)
Q Consensus       263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------  330 (436)
                      |.....+..+|.++...++ +++|+..|+++++++|+++.++..+|.++...|++++|+..+...+..            
T Consensus       234 ~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            9999999999999999875 999999999999999999999999999999999999999999977766            


Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE  407 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  407 (436)
                      .++...|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+.+|+++++++|+++.++.++|.+|.++||
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            788999999999999999999999999999999999999999 9999999999999999999999999999999986

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-24  Score=203.80  Aligned_cols=216  Identities=12%  Similarity=0.107  Sum_probs=196.9

Q ss_pred             hcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH
Q 013821          189 GLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGE  267 (436)
Q Consensus       189 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~  267 (436)
                      ++.+++ ++..++..+|.++.+.+.+++|+.+++++|+++|++..+|..+|.++...| ++++|+.+++++++.+|++..
T Consensus        35 ~I~~~p-~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~  113 (315)
T d2h6fa1          35 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ  113 (315)
T ss_dssp             EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccccCH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh
Confidence            456666 677899999999999999999999999999999999999999999999987 599999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821          268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS  347 (436)
Q Consensus       268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~  347 (436)
                      +|..+|.++..+++ +++|+.+|+++++++|++..+|.++|                      .++...|++++|+.+|+
T Consensus       114 a~~~~~~~~~~l~~-~~eAl~~~~kal~~dp~n~~a~~~~~----------------------~~~~~~~~~~~Al~~~~  170 (315)
T d2h6fa1         114 VWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQ----------------------WVIQEFKLWDNELQYVD  170 (315)
T ss_dssp             HHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCCTTHHHHHH
T ss_pred             HHHHHhHHHHhhcc-HHHHHHHHhhhhhhhhcchHHHHHHH----------------------HHHHHHHhhHHHHHHHH
Confidence            99999999999875 99999999999999999999999999                      88889999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821          348 RAILANPGDGEIMSQYAKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       348 ~al~~~p~~~~~~~~la~~~~~~g~d-----~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  422 (436)
                      ++++++|.+..+|+++|.++...+..     +++|+..+.++++++|++..+|..++.++...| .+++.+.+.+++.+.
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~  249 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQ  249 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHT
T ss_pred             HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhC
Confidence            99999999999999999998877651     478999999999999999999999998866544 688899999999998


Q ss_pred             CCChhHH
Q 013821          423 PIRQGAV  429 (436)
Q Consensus       423 p~~~~~~  429 (436)
                      |+.....
T Consensus       250 ~~~~~~~  256 (315)
T d2h6fa1         250 PSHSSPY  256 (315)
T ss_dssp             TTCCCHH
T ss_pred             CCcCCHH
Confidence            8865543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-23  Score=195.36  Aligned_cols=237  Identities=11%  Similarity=0.033  Sum_probs=203.8

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++++|...+.+++..+| ....+|..+|.++...|++++|+.+|+++++++|++...|..+|.++...|++++|++.+++
T Consensus        34 ~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  112 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD  112 (323)
T ss_dssp             CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhh
Confidence            56688999999999999 79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHH
Q 013821          258 ATMADPGDGESWM---------------QYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGED  320 (436)
Q Consensus       258 al~~~p~~~~~~~---------------~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A  320 (436)
                      ++...|.....+.               .....+...+. +.+|+..|+++++++|+  ++.++..+|.++...|++++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A  191 (323)
T d1fcha_         113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL-FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA  191 (323)
T ss_dssp             HHHTSTTTGGGCC---------------CTTHHHHHHHH-HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhH-HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhh
Confidence            9999887532211               11112233343 88899999999999887  567788899999999999999


Q ss_pred             HHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          321 DKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       321 ~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                      +..+++++..            .++...|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++
T Consensus       192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~  270 (323)
T d1fcha_         192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC
Confidence            9999987776            789999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCHH-----------HHHHHHHHHHHCCChHHHHHHHHH
Q 013821          389 PADSH-----------VLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       389 p~~~~-----------~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      |++..           +|..++.++..+|+.+.+.....+
T Consensus       271 p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~  310 (323)
T d1fcha_         271 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  310 (323)
T ss_dssp             HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             CcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            88763           556678888888887766544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-22  Score=188.58  Aligned_cols=182  Identities=13%  Similarity=0.145  Sum_probs=172.1

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL  304 (436)
Q Consensus       225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~  304 (436)
                      |..+|+..+++..+|.++.+.+.+++|++.++++++++|.+..+|+.+|.++...++++++|+.+++++++.+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            44567788999999999999999999999999999999999999999999999988789999999999999999999999


Q ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821          305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA  384 (436)
Q Consensus       305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a  384 (436)
                      ..+|                      .++..+|++++|+.+|.++++++|.+..+|.++|.++..+|+ +++|+..|+++
T Consensus       116 ~~~~----------------------~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~-~~~Al~~~~~a  172 (315)
T d2h6fa1         116 HHRR----------------------VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQL  172 (315)
T ss_dssp             HHHH----------------------HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHH
T ss_pred             HHHh----------------------HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            9999                      888899999999999999999999999999999999999999 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHCCC------hHHHHHHHHHHHhhCCCChhHH
Q 013821          385 VQASPADSHVLAAYACFLWETEE------DEDDSKSSDQFQQVAPIRQGAV  429 (436)
Q Consensus       385 l~~~p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~l~p~~~~~~  429 (436)
                      ++++|.+..+|.+++.++...+.      +++|+..+.+++.+.|....+.
T Consensus       173 l~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~  223 (315)
T d2h6fa1         173 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW  223 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHH
Confidence            99999999999999999998887      4789999999999999876543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.3e-21  Score=175.02  Aligned_cols=203  Identities=9%  Similarity=-0.035  Sum_probs=160.6

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV  276 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  276 (436)
                      .+..+..+|.++...|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|.++.++..+|.++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821          277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD  356 (436)
Q Consensus       277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  356 (436)
                      ...++ +++|+..|+++++.+|.+......++                      ..+...+..+.+...........+..
T Consensus       116 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_         116 YYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLY----------------------LAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHhh-HHHHHHHHHHHHhhccccHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHhhccchhh
Confidence            99875 99999999999999999999888887                      45555555555555555555444443


Q ss_pred             HHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          357 GEIMSQYAKLV----WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       357 ~~~~~~la~~~----~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      .. +. +...+    ...+. +..+...+...+...|....+++.+|.++..+|++++|+.+|++++...|+.
T Consensus       173 ~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         173 WG-WN-IVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             TH-HH-HHHHHTTSSCHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             hh-hh-HHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            21 11 11111    12223 4555555556666667667778888888888888888888888888887764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=3.9e-22  Score=190.53  Aligned_cols=245  Identities=9%  Similarity=-0.020  Sum_probs=212.0

Q ss_pred             CChHHHHHhhcCCCCCCchhhhhhHHhhh----------hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 013821          180 VSPPMYLAMGLGISVPGFDDAGEVVDLIM----------PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--  247 (436)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~----------~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--  247 (436)
                      +.+...+.+++.++| ++..+|...+.++          ...|++++|+.+++++++.+|++..+|..+|.++...++  
T Consensus        46 ~~al~~~~~~l~~~P-~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          46 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            466777888888888 7888876655543          444558999999999999999999999999999988764  


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013821          248 LYRAEDYYNHATMADPGDGESWMQ-YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE  326 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  326 (436)
                      +++|+..++++++.+|.+..++.. +|.++...+ .+++|+.+++++++.+|.+..+|..+|.++..+|++++|...+..
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            899999999999999999998764 555555555 599999999999999999999999999999999998877555543


Q ss_pred             HHHH--------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          327 HIQV--------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY  398 (436)
Q Consensus       327 ~~~~--------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~l  398 (436)
                      .+..        ..+...+..+++...|.+++...|.+...+..++.++...++ +.+|+..+.+++..+|.+..++..+
T Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l  282 (334)
T d1dcea1         204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILL  282 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh-HHHHHHHHHHHHhhCchHHHHHHHH
Confidence            2222        445667888899999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          399 ACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       399 a~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                      |.++..+|++++|+++|+++++++|....
T Consensus       283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         283 MRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            99999999999999999999999996443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.3e-16  Score=150.22  Aligned_cols=246  Identities=13%  Similarity=0.053  Sum_probs=198.6

Q ss_pred             hcCCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q 013821          176 IERPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKK  245 (436)
Q Consensus       176 ~~~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~  245 (436)
                      ..+++.|..++..++.+.+...    ..++..+|.++...|++++|+..|+++++..+..      ..++..++.++...
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            3477788888888888877432    2567788999999999999999999988865432      35678888899999


Q ss_pred             CCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 013821          246 GDLYRAEDYYNHATMADPG--------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLW  312 (436)
Q Consensus       246 g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~  312 (436)
                      |++..|...+.+++.+.+.        ....+..+|.++...++ ++.|...+++++...+.     ...++..++.++.
T Consensus       105 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (366)
T d1hz4a_         105 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  183 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            9999999999998876321        23466778888888774 99999999999887664     3456677888888


Q ss_pred             HccCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 013821          313 EMEDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWE  369 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~  369 (436)
                      ..+...++...+.+....                   .++...|++++|..++++++...+.+    ...+.++|.++..
T Consensus       184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  263 (366)
T d1hz4a_         184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL  263 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            888888888877755543                   67788999999999999999887654    4677889999999


Q ss_pred             hcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821          370 LHHDHDKALCYFERAVQA------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       370 ~g~d~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  423 (436)
                      .|+ +++|+..+++++..      .|....++..+|.++..+|++++|++.+++++++.+
T Consensus       264 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         264 LGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            999 99999999999864      344567899999999999999999999999998753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2e-17  Score=150.70  Aligned_cols=192  Identities=13%  Similarity=0.013  Sum_probs=156.2

Q ss_pred             CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821          178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      +++.|..+|.+++.+++ +++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++
T Consensus        52 ~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          52 LRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56688999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG  337 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g  337 (436)
                      +++.+|.+......++.++...+. .+.+...........+..... . +.  ....+.                ....+
T Consensus       131 al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~----------------~~~~~  189 (259)
T d1xnfa_         131 FYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGW-N-IV--EFYLGN----------------ISEQT  189 (259)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHSCCCSTHH-H-HH--HHHTTS----------------SCHHH
T ss_pred             HHhhccccHHHHHHHHHHHHHhhh-HHHHHHHHHHhhccchhhhhh-h-HH--HHHHHH----------------HHHHH
Confidence            999999999998888877777653 444444445545544444321 1 11  111111                11234


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      .+..+...+...+...|....+++++|.++..+|+ +++|+.+|++++..+|++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCH
Confidence            46667777777777788888999999999999999 9999999999999999864

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.4e-18  Score=161.98  Aligned_cols=217  Identities=9%  Similarity=-0.048  Sum_probs=189.5

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD--DSAEAEEYYKRMIDEYPCHPLLL-RNYAQLLQKKGDLYRAEDYYNH  257 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~-~~la~~~~~~g~~~~A~~~~~~  257 (436)
                      ++..++..++...+ .++.+|..+|.++...+  ++++|+..++++++.+|.+..++ ...|.++...+.+++|+..+++
T Consensus        91 ~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~  169 (334)
T d1dcea1          91 AELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS  169 (334)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence            56667888888888 78899999998776665  58999999999999999999876 5677888899999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821          258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------  330 (436)
Q Consensus       258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------  330 (436)
                      +++.+|.+..+|+.+|.++..+++ +++|+..+++++++.|.....+..    +...+..+++...+...+..       
T Consensus       170 ~i~~~p~~~~a~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~~~~~  244 (334)
T d1dcea1         170 LITRNFSNYSSWHYRSCLLPQLHP-QPDSGPQGRLPENVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAEPLFR  244 (334)
T ss_dssp             TTTTTCCCHHHHHHHHHHHHHHSC-CCCSSSCCSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred             HHHcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhHHhHHHHHHHHHH----HHHhcchhHHHHHHHHHHHhCcchhhH
Confidence            999999999999999999999985 899998888888887776554433    44567777777777766655       


Q ss_pred             -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                           .++...+++.+|+..+.+++..+|.+..++..+|.++..+|+ +++|+.+|+++++++|.+...|..++..+.-
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence                 777888999999999999999999999999999999999999 9999999999999999999999999887764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.3e-16  Score=123.94  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=104.6

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  280 (436)
                      ....|+.++..|++++|+.+|+++++.+|+++.+|..+|.+|..+|++++|+..|.++++++|.++.+|+.+|.++..++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          281 RDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      + +++|+..|+++++++|+++.++..++.+
T Consensus        86 ~-~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          86 R-FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             C-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5 9999999999999999999999998854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-17  Score=166.63  Aligned_cols=218  Identities=10%  Similarity=-0.045  Sum_probs=143.4

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM  260 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  260 (436)
                      +|..|+.+++.+.+ +.+.++.++|.++..+|++++|   |++++..+|+....+...+.++  ...|..+++.+++..+
T Consensus         4 eA~q~~~qA~~l~p-~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k   77 (497)
T d1ya0a1           4 QSAQYLRQAEVLKA-DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK   77 (497)
T ss_dssp             HHHHHHHHHHHHHG-GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCC-CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence            46788999999999 8999999999999999999876   8999999997766654333333  2235678888888776


Q ss_pred             hC--CCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821          261 AD--PGDGESWMQ-YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG  337 (436)
Q Consensus       261 ~~--p~~~~~~~~-la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g  337 (436)
                      ..  ++....... ++.+....+ .|+.|+..+++++.++|.+...+.++|                      .++...|
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~a~~-~Y~~ai~~l~~~~~l~~~~~~~~~~lg----------------------~~~~~~~  134 (497)
T d1ya0a1          78 NRANPNRSEVQANLSLFLEAASG-FYTQLLQELCTVFNVDLPCRVKSSQLG----------------------IISNKQT  134 (497)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHH-HHHHHHHHHTC---------------------------------------------
T ss_pred             cccCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCChhhHHHHHHhH----------------------HHHHhCC
Confidence            54  333333332 333433444 489999999999999999999999999                      7777788


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821          338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ  417 (436)
Q Consensus       338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  417 (436)
                      ++++|+..+++++..+|.  .++.++|.++...|+ +++|+.+|++|++++|+++.++.++|.++...|+..+|+.+|.+
T Consensus       135 ~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~-~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         135 HTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQ-TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             --------CCHHHHHHHH--HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888888888877653  677888888888888 88888888888888888888888888888888888888888888


Q ss_pred             HHhhCCCChhHHh
Q 013821          418 FQQVAPIRQGAVT  430 (436)
Q Consensus       418 al~l~p~~~~~~~  430 (436)
                      ++.+.|.|..+..
T Consensus       212 al~~~~~~~~a~~  224 (497)
T d1ya0a1         212 SIAVKFPFPAAST  224 (497)
T ss_dssp             HHSSSBCCHHHHH
T ss_pred             HHhCCCCCHHHHH
Confidence            8888888776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=4.3e-16  Score=145.31  Aligned_cols=202  Identities=14%  Similarity=0.069  Sum_probs=160.9

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEY------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------G  266 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  266 (436)
                      ..|...|+++...+++++|+.+|++++++.      +....+|..+|.+|..+|++++|+++|++++.+.+..      .
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            457778999999999999999999999973      2234789999999999999999999999999986554      5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821          267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE  340 (436)
Q Consensus       267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~  340 (436)
                      .++..+|.++....+++++|+.+|++++++.+..      ..++.++|                      .++..+|+|+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la----------------------~~~~~~g~y~  175 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA----------------------DLKALDGQYI  175 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH----------------------HHHHHcChHH
Confidence            6788899888775457999999999999875432      33456666                      8899999999


Q ss_pred             HHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH--CC
Q 013821          341 GAEEYFSRAILANPGDG-------EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-----VLAAYACFLWE--TE  406 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g  406 (436)
                      +|+.+|++++...+.+.       ..+...+.++...|+ +..|...++++++++|....     .+..+..++..  .+
T Consensus       176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e  254 (290)
T d1qqea_         176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE  254 (290)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence            99999999999987653       456788888889999 99999999999999986543     34455555544  35


Q ss_pred             ChHHHHHHHHHHHhhCC
Q 013821          407 EDEDDSKSSDQFQQVAP  423 (436)
Q Consensus       407 ~~~eA~~~~~~al~l~p  423 (436)
                      .+++|+..|.++..++|
T Consensus       255 ~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         255 QLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             THHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHhhcCH
Confidence            68999999988777765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-15  Score=121.71  Aligned_cols=109  Identities=11%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      +...|..++..|++++|+..|+++++.+|.++.+|..+|.++..+++ +++|+..|+++++++|+++.+|+++|      
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g------   78 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKA------   78 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc-ccccchhhhhHHHhccchhhHHHHHH------
Confidence            45567777777777777777777777777777777777777666653 77777777777777777777776666      


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                                      .++..+|++++|+..|+++++++|+++.++..++.+
T Consensus        79 ----------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          79 ----------------AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             ----------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ----------------HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                            666666677777777777777777766666666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-15  Score=126.04  Aligned_cols=110  Identities=16%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      +...|..++..|+|++|+.+|+++++++|.++.+|..+|.++..+++ +++|+.+|+++++++|++..+|..+|      
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~kal~~~p~~~~a~~~~g------   85 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA------   85 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc-cchHHHHHHHHHHHcccchHHHHHHH------
Confidence            44556666666666666666666666666666666666666666653 66666666666666666666666666      


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV  367 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  367 (436)
                                      .++..+|++++|+.+|++++.++|++..++..++.+.
T Consensus        86 ----------------~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          86 ----------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             ----------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ----------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                            5555666666666666666666666666655555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-15  Score=129.34  Aligned_cols=129  Identities=14%  Similarity=0.037  Sum_probs=89.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013821          236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME  315 (436)
Q Consensus       236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  315 (436)
                      ++.|..+...|+|++|++.|.+   +.+.++.+|+++|.++..++. +++|+.+|+++++++|+++.+|+++|       
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~ldp~~~~a~~~~g-------   77 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRG-------   77 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhhhhhHHHHH-------
Confidence            3456666666666666666654   244456666666666666653 66666666666666666666666666       


Q ss_pred             CchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcCCHHHHHH
Q 013821          316 DDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----------------DGEIMSQYAKLVWELHHDHDKALC  379 (436)
Q Consensus       316 ~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~g~d~~eA~~  379 (436)
                                     .++.++|++++|+..|++|+...+.                ..++++++|.++..+|+ +++|+.
T Consensus        78 ---------------~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~-~~~A~~  141 (192)
T d1hh8a_          78 ---------------MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEE  141 (192)
T ss_dssp             ---------------HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             ---------------HHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC-HHHHHH
Confidence                           5666666666666666666655332                24788999999999999 999999


Q ss_pred             HHHHHHHhCCCC
Q 013821          380 YFERAVQASPAD  391 (436)
Q Consensus       380 ~~~~al~~~p~~  391 (436)
                      .+++++.+.|+.
T Consensus       142 ~l~~A~~~~~~~  153 (192)
T d1hh8a_         142 QLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHTTCCSG
T ss_pred             HHHHHHhcCCCc
Confidence            999999999874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-15  Score=126.39  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=105.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..+...|+.+++.|+|++|+.+|+++++.+|+++.+|.++|.++...|++++|+..|+++++++|.+..+|..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      +++ +++|+.+|++++.++|++..++..++.+
T Consensus        91 ~g~-~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          91 LGK-FRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             TTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            985 9999999999999999999998888744

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.6e-15  Score=137.44  Aligned_cols=218  Identities=16%  Similarity=0.114  Sum_probs=168.6

Q ss_pred             HHHHHhhcCCCCCCchhhhhhHHhhhhhCC--------------CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Q 013821          183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFD--------------DSAEAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGD  247 (436)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------------~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~  247 (436)
                      ...|.+++...+ ..+..|..-+..+...+              ..++|..+|+++++. .|.+...|..++.++...|+
T Consensus        36 ~~vyerAl~~~~-~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~  114 (308)
T d2onda1          36 MFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCC-CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence            345666666666 56667776666554322              236677777777763 56677777777777777777


Q ss_pred             HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013821          248 LYRAEDYYNHATMADPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE  326 (436)
Q Consensus       248 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  326 (436)
                      +++|...|+++++..|.+ ..+|..++.+....++ ++.|...|+++++..|.....+...+                  
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~-~~~ar~i~~~al~~~~~~~~~~~~~a------------------  175 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA------------------  175 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHHHHHH------------------
Confidence            777777777777777765 3467777777666664 77777777777777777777776666                  


Q ss_pred             HHHHhH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 013821          327 HIQVLP-IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD----SHVLAAYACF  401 (436)
Q Consensus       327 ~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~----~~~~~~la~~  401 (436)
                          .. +...|+.+.|...|++++..+|+++..|..++..+...|+ +++|..+|++++...|.+    ..+|..+..+
T Consensus       176 ----~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~-~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f  250 (308)
T d2onda1         176 ----LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             ----HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             ----HHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence                33 3456899999999999999999999999999999999999 999999999999987754    3588888999


Q ss_pred             HHHCCChHHHHHHHHHHHhhCCCC
Q 013821          402 LWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       402 ~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      ....|+.+.+.++++++.++.|..
T Consensus       251 E~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         251 ESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHHCccc
Confidence            899999999999999999988765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.5e-15  Score=129.17  Aligned_cols=129  Identities=14%  Similarity=0.124  Sum_probs=117.0

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR  281 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  281 (436)
                      .+.|..+...|++++|+..|.++   .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+++
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            36799999999999999999864   566889999999999999999999999999999999999999999999999985


Q ss_pred             CHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821          282 DQHRALTYFERAALAAPQD----------------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY  345 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~  345 (436)
                       +++|+..|++++...+.+                ..+++++|                      .++...|++++|++.
T Consensus        86 -~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a----------------------~~~~~~~~~~~A~~~  142 (192)
T d1hh8a_          86 -YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA----------------------FMYAKKEEWKKAEEQ  142 (192)
T ss_dssp             -HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHH----------------------HHHHHCCCHHHHHHH
Confidence             999999999999876643                35677778                      889999999999999


Q ss_pred             HHHHHHhCCCC
Q 013821          346 FSRAILANPGD  356 (436)
Q Consensus       346 ~~~al~~~p~~  356 (436)
                      |.+++.+.|+.
T Consensus       143 l~~A~~~~~~~  153 (192)
T d1hh8a_         143 LALATSMKSEP  153 (192)
T ss_dssp             HHHHHTTCCSG
T ss_pred             HHHHHhcCCCc
Confidence            99999999874

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.3e-14  Score=135.13  Aligned_cols=179  Identities=12%  Similarity=0.043  Sum_probs=143.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHH
Q 013821          212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP------GDGESWMQYAKLVWELHRDQHR  285 (436)
Q Consensus       212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~d~~~  285 (436)
                      ++|++|.++|.++              |.+|...|+|++|++.|.+++++..      ....++..+|.+|...+. +++
T Consensus        31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~-~~~   95 (290)
T d1qqea_          31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVN   95 (290)
T ss_dssp             HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred             ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-cHH
Confidence            4577787776665              8899999999999999999998732      235689999999998875 999


Q ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCC---
Q 013821          286 ALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ-SKGDLEGAEEYFSRAILANPG---  355 (436)
Q Consensus       286 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~---  355 (436)
                      |+.+|++++++.+..      ..++..+|                      .++. ..|++++|+.+|++++++.+.   
T Consensus        96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          96 AVDSLENAIQIFTHRGQFRRGANFKFELG----------------------EILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhHHhhhcccchhHHHHHHHHH----------------------HhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999886554      34445555                      5564 469999999999999987432   


Q ss_pred             ---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          356 ---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       356 ---~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                         ...++.++|.++..+|+ |++|+..|++++...+...       ..+...+.++...|+++.|...+.++..++|.|
T Consensus       154 ~~~~~~~~~~la~~~~~~g~-y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~  232 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             hhhhhhHHHHHHHHHHHcCh-HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence               24678999999999999 9999999999999987764       456788889999999999999999999999887


Q ss_pred             hhH
Q 013821          426 QGA  428 (436)
Q Consensus       426 ~~~  428 (436)
                      ...
T Consensus       233 ~~s  235 (290)
T d1qqea_         233 ADS  235 (290)
T ss_dssp             ---
T ss_pred             cch
Confidence            654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=5.1e-15  Score=129.30  Aligned_cols=106  Identities=16%  Similarity=0.036  Sum_probs=91.1

Q ss_pred             hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW  277 (436)
Q Consensus       198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  277 (436)
                      +..+...|+.++..|+|++|+.+|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          278 ELHRDQHRALTYFERAALAAPQDSNIL  304 (436)
Q Consensus       278 ~~~~d~~~A~~~~~~al~~~p~~~~~~  304 (436)
                      .+++ +++|+..|+++++++|++...+
T Consensus        84 ~l~~-~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          84 EMES-YDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HTTC-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HCCC-HHHHHHHHHHHHHhCcccHHHH
Confidence            8875 9999999999988887654443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.5e-15  Score=130.39  Aligned_cols=99  Identities=16%  Similarity=0.062  Sum_probs=94.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF  310 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~  310 (436)
                      .+..+...|..++..|+|++|+.+|+++++++|.++.+|.++|.+|...++ +++|+.+|+++++++|+++.+|+.+|.+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~-~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh-hhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            566788999999999999999999999999999999999999999999985 9999999999999999999999999999


Q ss_pred             HHHccCchHHHHHHHHHHHH
Q 013821          311 LWEMEDDGEDDKAQEEHIQV  330 (436)
Q Consensus       311 ~~~~g~~~~A~~~~~~~~~~  330 (436)
                      +..+|++++|+..+.+++..
T Consensus        82 ~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999988875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3e-13  Score=115.44  Aligned_cols=135  Identities=11%  Similarity=0.042  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ..+...|..++..|+|++|+..|++++...|............           ...+.         ..++.++|    
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~-----------~~~~~---------~~~~~nla----   69 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK-----------AQALR---------LASHLNLA----   69 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHH-----------HHHHH---------HHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhh-----------hchhH---------HHHHHHHH----
Confidence            4455677777777777777777777777665432211100000           00000         12344556    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                                        .+|.++|+|++|+.+++++|+++|.++.+++.+|.++..+|+ +++|+..|+++++++|+++
T Consensus        70 ------------------~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          70 ------------------MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             ------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCH
T ss_pred             ------------------HHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCH
Confidence                              666666777777777777777777777777777777777776 7777777777777777777


Q ss_pred             HHHHHHHHHHHHCCChHH
Q 013821          393 HVLAAYACFLWETEEDED  410 (436)
Q Consensus       393 ~~~~~la~~~~~~g~~~e  410 (436)
                      .+...++.+....++..+
T Consensus       131 ~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1         131 AAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666655554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.6e-13  Score=123.39  Aligned_cols=237  Identities=12%  Similarity=-0.044  Sum_probs=187.1

Q ss_pred             cCCCChHHHHHhhcCCCCCC-----chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHH
Q 013821          177 ERPVSPPMYLAMGLGISVPG-----FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC--------HPLLLRNYAQLLQ  243 (436)
Q Consensus       177 ~~p~~a~~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------~~~~~~~la~~~~  243 (436)
                      .++++|..++..++.+.+..     ....+..++.++...|++..|+..+.+++...+.        ....+..+|.++.
T Consensus        65 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  144 (366)
T d1hz4a_          65 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  144 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH
Confidence            35556677777766554321     1256778899999999999999999999985321        2356788999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHH
Q 013821          244 KKGDLYRAEDYYNHATMADPGD-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-------DSNILAAYACFL  311 (436)
Q Consensus       244 ~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-------~~~~~~~la~~~  311 (436)
                      ..|+++.|...+.+++...+..     ..++..++.++...+. +.++...+.++......       ...++..++.++
T Consensus       145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T d1hz4a_         145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW  223 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            9999999999999999986643     5677788888888875 99999999999887543       245667889999


Q ss_pred             HHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Q 013821          312 WEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYFSRAILA------NPGDGEIMSQYAKLVWE  369 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~  369 (436)
                      ...++.++|...+.+.+..                .++...|++++|+.++++++..      .|....++..+|.++..
T Consensus       224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  303 (366)
T d1hz4a_         224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ  303 (366)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence            9999999999988743322                6889999999999999999865      34557789999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          370 LHHDHDKALCYFERAVQASPA---------DSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       370 ~g~d~~eA~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      +|+ +++|+..+++++++.+.         ....+..+...+...++.+++....
T Consensus       304 ~g~-~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~  357 (366)
T d1hz4a_         304 AGR-KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR  357 (366)
T ss_dssp             HTC-HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             CCC-HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            999 99999999999987542         2345566666777888888887653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=6.3e-14  Score=119.55  Aligned_cols=135  Identities=18%  Similarity=0.138  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      +...|..++..|+|++|+..|+++++..+                   ...+.....+...++|....++.++|      
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~nla------   84 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVE-------------------GSRAAAEDADGAKLQPVALSCVLNIG------   84 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HHHHHSCHHHHGGGHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------------hhhhhhhhHHHHHhChhhHHHHHHHH------
Confidence            46678888889999999998888876422                   11222222334455666777788888      


Q ss_pred             cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821          315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV  394 (436)
Q Consensus       315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~  394 (436)
                                      .++.++|+|++|+..|+++|+++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..+
T Consensus        85 ----------------~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~-~~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1          85 ----------------ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             ----------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred             ----------------HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHH
Confidence                            888889999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHCCChHHH
Q 013821          395 LAAYACFLWETEEDEDD  411 (436)
Q Consensus       395 ~~~la~~~~~~g~~~eA  411 (436)
                      +..++.+........++
T Consensus       148 ~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         148 QAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888887766555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.51  E-value=1.7e-14  Score=120.10  Aligned_cols=134  Identities=13%  Similarity=0.109  Sum_probs=94.0

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      .+.+.+.|++|+..|+++++++|+++.++.++|.++...+++..+.+.                        .+ .+++|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------~~-~~~~A   60 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA------------------------KQ-MIQEA   60 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------HH-HHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH------------------------HH-HHHHH
Confidence            445566778888888888888888888888888877766665554432                        12 26788


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821          287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL  366 (436)
Q Consensus       287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  366 (436)
                      +..|+++++++|++..+++++|.++..+|....           ......+.|++|+++|+++++++|++..++..|+.+
T Consensus        61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~-----------~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP-----------DETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhHHHhhHHHHHHHcccchh-----------hHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            888888888888888888888866665543211           222234567888899999999999988888888877


Q ss_pred             HHHhcCCHHHH
Q 013821          367 VWELHHDHDKA  377 (436)
Q Consensus       367 ~~~~g~d~~eA  377 (436)
                      ....+. +.++
T Consensus       130 ~ka~~~-~~e~  139 (145)
T d1zu2a1         130 AKAPQL-HAEA  139 (145)
T ss_dssp             HTHHHH-HHHH
T ss_pred             HHHHHH-HHHH
Confidence            655544 4443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1e-12  Score=123.04  Aligned_cols=189  Identities=11%  Similarity=0.080  Sum_probs=169.0

Q ss_pred             ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821          181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHAT  259 (436)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  259 (436)
                      .+...+.+|+..........|...+.+....|++++|...|+++++..|.+. .+|..++.+....|++++|+..|++++
T Consensus        82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al  161 (308)
T d2onda1          82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            5567788988753336778899999999999999999999999999999775 579999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821          260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL  339 (436)
Q Consensus       260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~  339 (436)
                      +..|.....+...|...+...++.+.|...|+++++..|+++..|..++                      ..+...|++
T Consensus       162 ~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~----------------------~~~~~~g~~  219 (308)
T d2onda1         162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI----------------------DYLSHLNED  219 (308)
T ss_dssp             TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH----------------------HHHHTTCCH
T ss_pred             HhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH----------------------HHHHHcCCh
Confidence            9999999999999988777666799999999999999999999999999                      778889999


Q ss_pred             HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          340 EGAEEYFSRAILANPGD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       340 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                      ++|..+|++++...|.+    ..+|..+.......|+ .+.+..+++++.++.|+..
T Consensus       220 ~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~-~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcccc
Confidence            99999999999987754    4578888888888899 9999999999999998764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.6e-13  Score=114.27  Aligned_cols=122  Identities=11%  Similarity=0.035  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY  345 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~  345 (436)
                      +..+...|..++..++ |++|+..|+++++..|..........                                .....
T Consensus        13 a~~l~~~G~~~~~~~~-~~~Ai~~y~~al~~~~~~~~~~~~~~--------------------------------~~~~~   59 (170)
T d1p5qa1          13 STIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEA--------------------------------QKAQA   59 (170)
T ss_dssp             HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHH--------------------------------HHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhccccchHHH--------------------------------hhhch
Confidence            3456778999999875 99999999999999876432111111                                00000


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      +         ...++.++|.++.++|+ +++|+.++++++.++|.++.+++.+|.++..+|++++|+..|++++.++|+.
T Consensus        60 ~---------~~~~~~nla~~y~k~~~-~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          60 L---------RLASHLNLAMCHLKLQA-FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             H---------HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             h---------HHHHHHHHHHHHHhhhh-cccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            1         02367889999999999 9999999999999999999999999999999999999999999999999987


Q ss_pred             hhHHh
Q 013821          426 QGAVT  430 (436)
Q Consensus       426 ~~~~~  430 (436)
                      .....
T Consensus       130 ~~~~~  134 (170)
T d1p5qa1         130 KAAKT  134 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.50  E-value=1.4e-13  Score=109.00  Aligned_cols=94  Identities=20%  Similarity=0.068  Sum_probs=88.0

Q ss_pred             hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821          200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL  279 (436)
Q Consensus       200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  279 (436)
                      .++.+|..+.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|.+..+|..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 013821          280 HRDQHRALTYFERAA  294 (436)
Q Consensus       280 ~~d~~~A~~~~~~al  294 (436)
                      |. +++|++++++.|
T Consensus        98 g~-~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HN-ANAALASLRAWL  111 (112)
T ss_dssp             HH-HHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHh
Confidence            85 999999999875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-13  Score=111.27  Aligned_cols=115  Identities=12%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE  313 (436)
Q Consensus       234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  313 (436)
                      .+..+|..++..|+|++|+.+|+++++++|.++.++.++|.+|..+++ |++|+..|+++++++|.+...+..++.++..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc-hHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            344566666666666666666666666666666666666666666653 6666666666666666666656666655555


Q ss_pred             ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821          314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK  365 (436)
Q Consensus       314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  365 (436)
                      +|               .++...+++++|+.+|++++..++. +++...+..
T Consensus        85 lg---------------~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          85 IG---------------NSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HH---------------HHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HH---------------HHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            55               8888999999999999999998875 555544433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.48  E-value=1.9e-13  Score=108.31  Aligned_cols=88  Identities=18%  Similarity=0.100  Sum_probs=86.2

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                      .++.+.|++++|+..|++++..+|+++.+|..+|.++..+|+ +++|+.+|+++++++|++..+|..+|.+|..+|++++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh-HHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence            888999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013821          411 DSKSSDQFQ  419 (436)
Q Consensus       411 A~~~~~~al  419 (436)
                      |++.+++++
T Consensus       103 A~~~l~~~l  111 (112)
T d1hxia_         103 ALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999976

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=4.1e-13  Score=112.53  Aligned_cols=114  Identities=16%  Similarity=0.029  Sum_probs=102.0

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----------------PLLLRNYAQLLQKKGDLYRAEDYYNHATMAD  262 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  262 (436)
                      ..+...|+.++..|+|.+|+..|++++...+..                ..++.++|.+|.++|++++|+.+++++++++
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            356668899999999999999999999866532                2467889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE  313 (436)
Q Consensus       263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  313 (436)
                      |.+..+|+.+|.++..+++ +++|+.+|+++++++|++..+...+..+..+
T Consensus        98 p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999985 9999999999999999999999988855443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=1.1e-13  Score=115.07  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ  362 (436)
Q Consensus       283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  362 (436)
                      |++|+..|+++++++|+++.+++++|.++...+++..+            ....+.+++|+..|++|++++|+++.+|++
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~------------~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~   80 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI------------SDAKQMIQEAITKFEEALLIDPKKDEAVWC   80 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH------------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhh------------hHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence            77777777777777777777777777666655544322            234567789999999999999999999999


Q ss_pred             HHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821          363 YAKLVWELHH----------DHDKALCYFERAVQASPADSHVLAAYACFLWET  405 (436)
Q Consensus       363 la~~~~~~g~----------d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  405 (436)
                      +|.+|..+|+          ++.+|+.+|+++++++|++..++..++.+....
T Consensus        81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            9999987653          268999999999999999999999988876443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.47  E-value=9.2e-13  Score=112.12  Aligned_cols=144  Identities=11%  Similarity=0.086  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL  311 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~  311 (436)
                      +..+...|..++..|+|.+|+..|++++...+........           .......+         ...++.++|   
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------~~~~~~~~---------~~~~~~Nla---   71 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------ESKASESF---------LLAAFLNLA---   71 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------HHHHHHHH---------HHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------hhhhcchh---------HHHHHHhHH---
Confidence            3456677777888888888888887777654332110000           00000000         123455666   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD  391 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~  391 (436)
                                         .+|..+|++++|+.++++++.++|.+..+++++|.++..+|+ +++|+..|+++++++|++
T Consensus        72 -------------------~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          72 -------------------MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTC
T ss_pred             -------------------HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Confidence                               677777777777777777777777777777777777777777 777777777777777777


Q ss_pred             HHHHHHHHHHHHHCCChHH-HHHHHHHH
Q 013821          392 SHVLAAYACFLWETEEDED-DSKSSDQF  418 (436)
Q Consensus       392 ~~~~~~la~~~~~~g~~~e-A~~~~~~a  418 (436)
                      ..++..++.+....+.+.+ ..+.|.+.
T Consensus       132 ~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         132 KAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            7777777777666655443 33344333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=3.7e-13  Score=114.66  Aligned_cols=113  Identities=19%  Similarity=0.108  Sum_probs=101.9

Q ss_pred             hhhHHhhhhhCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          201 GEVVDLIMPNFDDSAEAEEYYKRMIDE----------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG  264 (436)
Q Consensus       201 ~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  264 (436)
                      ....|+.+...|++++|+..|+++++.                +|....++.++|.++.++|++++|+..|+++++++|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            456788899999999999999999864                3456678899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                      ++.+|+.+|.++..+++ +++|+..|+++++++|++..+...+..+....
T Consensus       110 ~~~a~~~~g~~~~~l~~-~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999985 99999999999999999999999998655443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=1.4e-12  Score=109.14  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ..+...|..++..|+|.+|+..|++++...+.....              .+.........+.     ..++.++|    
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--------------~~~~~~~~~~~~~-----~~~~~Nla----   74 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--------------DDQILLDKKKNIE-----ISCNLNLA----   74 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--------------CCHHHHHHHHHHH-----HHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh--------------hhHHHHHhhhhHH-----HHHHhhHH----
Confidence            456778899999999999999999999876543211              0111111111111     23567788    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                                        .+|.++|++++|+.+++++|+++|.+..+|+++|.++..+|+ +++|+..|+++++++|++.
T Consensus        75 ------------------~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          75 ------------------TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCH
T ss_pred             ------------------HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Confidence                              888889999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHCC
Q 013821          393 HVLAAYACFLWETE  406 (436)
Q Consensus       393 ~~~~~la~~~~~~g  406 (436)
                      .+...+..+..+++
T Consensus       136 ~~~~~l~~~~~kl~  149 (153)
T d2fbna1         136 DIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888888876654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.45  E-value=9.1e-11  Score=106.56  Aligned_cols=215  Identities=12%  Similarity=0.081  Sum_probs=168.6

Q ss_pred             chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQY  272 (436)
Q Consensus       197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  272 (436)
                      ++.+++++|..+...+++++|+++|+++.+.  ++..+++.||.+|..    ..++..|..+++++....  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            3568999999999999999999999999876  588999999999997    779999999999987654  77888888


Q ss_pred             HHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----chHHHHHHHHHHHH----------hHHHH
Q 013821          273 AKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED----DGEDDKAQEEHIQV----------LPIQS  335 (436)
Q Consensus       273 a~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~----------~~~~~  335 (436)
                      |.++...   ..+.+.|...++++.+..+  ..+...++..+.....    ...+...+......          .++..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            8776542   2358999999999987654  5556666666665332    33444444432222          33332


Q ss_pred             ----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 013821          336 ----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE---  404 (436)
Q Consensus       336 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---  404 (436)
                          ..+...+..+++.+.+  +.++.+++++|.++..    ..+ +++|+.+|+++.+.  .++.++++||.+|..   
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d-~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g  229 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACEL--ENGGGCFNLGAMQYNGEG  229 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSS
T ss_pred             CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccc-hhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCC
Confidence                4677888888888875  4679999999999887    344 99999999999887  468999999999986   


Q ss_pred             -CCChHHHHHHHHHHHhhC
Q 013821          405 -TEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       405 -~g~~~eA~~~~~~al~l~  422 (436)
                       ..++++|+++|+++....
T Consensus       230 ~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         230 VTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             SSCCSTTHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHHHHHHCc
Confidence             448999999999998874

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-13  Score=108.78  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          341 GAEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA  399 (436)
Q Consensus       341 ~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la  399 (436)
                      +|+..|++++..+|.+  ..+|+++|.+|..+|+ +++|+.+|+++++++|++..+...++
T Consensus        54 ~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          54 KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            3444444444433322  2234444444444444 44444444444444444444433333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.3e-13  Score=108.45  Aligned_cols=114  Identities=12%  Similarity=0.124  Sum_probs=94.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 013821          236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQD--SNILAAYACFL  311 (436)
Q Consensus       236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~  311 (436)
                      -.++..+...+++++|++.|++++.++|.++.+++++|.++...+  +++++|+..|++++..+|.+  ..+++++|   
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg---   79 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA---   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH---
Confidence            356778888889999999999999999999999999998886532  24678999999999888765  45788899   


Q ss_pred             HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821          312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH  371 (436)
Q Consensus       312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  371 (436)
                                         .+|...|++++|+.+|+++|+++|++..+...++.+..+++
T Consensus        80 -------------------~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          80 -------------------VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence                               99999999999999999999999999998888887766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.42  E-value=2.9e-12  Score=108.95  Aligned_cols=122  Identities=13%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821          266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY  345 (436)
Q Consensus       266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~  345 (436)
                      +..+...|..++..+. |.+|+..|++++...+.......                                ........
T Consensus        15 a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~--------------------------------~~~~~~~~   61 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSE--------------------------------KESKASES   61 (168)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCH--------------------------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccch--------------------------------hhhhhcch
Confidence            3456778889898875 99999999999876543211000                                00001111


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821          346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR  425 (436)
Q Consensus       346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  425 (436)
                      +         ...++.++|.|+..+|+ +++|+.++++++.++|.+..+++.+|.++..+|++++|+..|.+++.++|+.
T Consensus        62 ~---------~~~~~~Nla~~~~~l~~-~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          62 F---------LLAAFLNLAMCYLKLRE-YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             H---------HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             h---------HHHHHHhHHHHHHHhhh-cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            1         14577899999999999 9999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHh
Q 013821          426 QGAVT  430 (436)
Q Consensus       426 ~~~~~  430 (436)
                      .....
T Consensus       132 ~~~~~  136 (168)
T d1kt1a1         132 KAARL  136 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-12  Score=105.27  Aligned_cols=108  Identities=11%  Similarity=0.158  Sum_probs=94.1

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-------ESWMQ  271 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~  271 (436)
                      ..+..+|+.++..|+|++|+.+|+++++++|+++.++.++|.+|..+|+|++|+..++++++++|.+.       .++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999988775       45666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821          272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA  308 (436)
Q Consensus       272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la  308 (436)
                      +|.++...+ ++++|+.+|++++..+++ .+....+.
T Consensus        85 lg~~~~~~~-~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          85 IGNSYFKEE-KYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HHHHHHHhC-CHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            777777776 599999999999998875 44444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-12  Score=128.77  Aligned_cols=164  Identities=12%  Similarity=0.009  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhC--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821          215 AEAEEYYKRMIDEY--PCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE  291 (436)
Q Consensus       215 ~~A~~~~~~al~~~--P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~  291 (436)
                      ..+++.+++.++..  ++.. .....++.+....+.|+.|+..+.+++.++|.+...+..+|.++...++ +++|+..++
T Consensus        66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~  144 (497)
T d1ya0a1          66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH-TSAIVKPQS  144 (497)
T ss_dssp             HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred             HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC-HHHHHHHHH
Confidence            44555555555432  1111 1122234444455666666666666666666666666666666655553 666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821          292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH  371 (436)
Q Consensus       292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  371 (436)
                      +++..+|.  .++..+|                      .++...|++++|+.+|++|++++|+++.+++++|.++...|
T Consensus       145 ~al~~~~~--~~~~~LG----------------------~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         145 SSCSYICQ--HCLVHLG----------------------DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             HHHHHHHH--HHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHhCCCHH--HHHHHHH----------------------HHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            66655542  3455555                      55566666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          372 HDHDKALCYFERAVQASPADSHVLAAYACFLWE  404 (436)
Q Consensus       372 ~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  404 (436)
                      + +.+|+.+|.+++.++|..+.++.+|+.++.+
T Consensus       201 ~-~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         201 D-HLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             C-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            6 6666666666666666666666666665544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.9e-10  Score=87.68  Aligned_cols=77  Identities=12%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821          199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH-------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ  271 (436)
Q Consensus       199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  271 (436)
                      .....+|.++++.|+|.+|+.+|+++++..|.+       ..++.++|.++.+.|++++|+.+|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            445677777777777777777777777764432       4667777777777777777777777777777777777777


Q ss_pred             HHHH
Q 013821          272 YAKL  275 (436)
Q Consensus       272 la~~  275 (436)
                      ++.+
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3e-10  Score=86.48  Aligned_cols=73  Identities=14%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW  403 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~  403 (436)
                      .++++.|+|++|+.+|++|+++.|.+       ..++.++|.++.++|+ +++|+.+|+++++++|+++.++.+++.+..
T Consensus        13 ~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            89999999999999999999986543       6899999999999999 999999999999999999999999987654


Q ss_pred             H
Q 013821          404 E  404 (436)
Q Consensus       404 ~  404 (436)
                      .
T Consensus        92 ~   92 (95)
T d1tjca_          92 I   92 (95)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.08  E-value=7.5e-08  Score=86.65  Aligned_cols=184  Identities=16%  Similarity=0.172  Sum_probs=144.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE---LHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      ||.+++.+|..++..+++++|+++|+++.+.  ++..+++.||.+|..   ..+++..|..+++++....  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            5789999999999999999999999999775  588999999999887   2347999999999987654  77888888


Q ss_pred             HHHHHHc----cCchHHHHHHHHHHHH----------hHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          308 ACFLWEM----EDDGEDDKAQEEHIQV----------LPIQ----SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE  369 (436)
Q Consensus       308 a~~~~~~----g~~~~A~~~~~~~~~~----------~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  369 (436)
                      +.++...    .+.+.|...++.....          ..+.    .......|...+.+...  +.+...+..+|.++..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence            8877653    3456677766655443          1222    24567777777777655  5667899999999987


Q ss_pred             h---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhC
Q 013821          370 L---HHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVA  422 (436)
Q Consensus       370 ~---g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~  422 (436)
                      .   ..+...+..+++.+.+  +.++.+++++|.++..    ..++++|+.+|+++.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence            2   2337788888888775  5578999999999988    678999999999998873

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.05  E-value=2.2e-10  Score=95.63  Aligned_cols=96  Identities=15%  Similarity=0.045  Sum_probs=83.7

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD------------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--------  390 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~--------  390 (436)
                      ..++..|+|++|+..|++++++.|..            ..+|.++|.++..+|+ +++|+..+++++.+.|.        
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhcccccccccccc
Confidence            77888999999999999999998764            3678999999999999 99999999999987542        


Q ss_pred             ---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821          391 ---DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG  427 (436)
Q Consensus       391 ---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  427 (436)
                         ...+++++|.+|..+|++++|+..|++++++.|...+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence               2357899999999999999999999999999765443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.04  E-value=1.9e-10  Score=104.66  Aligned_cols=131  Identities=15%  Similarity=0.026  Sum_probs=107.2

Q ss_pred             hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821          207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA  286 (436)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A  286 (436)
                      -.+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+. .+++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~-~~~a   83 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA-RKDF   83 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc-cHHH
Confidence            346679999999999999999999999999999999999999999999999999999999999999988776654 5555


Q ss_pred             HHHHHHHHH-hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821          287 LTYFERAAL-AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM  360 (436)
Q Consensus       287 ~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  360 (436)
                      ...+.+... ..|.....+...+                      .++...|++++|+..+.++++..|..+..+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a----------------------~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSF----------------------NLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHhhhhhcccCchHHHHHHHHH----------------------HHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            444333222 2344445555556                      778889999999999999999998865443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.04  E-value=3.6e-10  Score=94.37  Aligned_cols=94  Identities=16%  Similarity=0.015  Sum_probs=64.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 013821          239 AQLLQKKGDLYRAEDYYNHATMADPGD------------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-------  299 (436)
Q Consensus       239 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-------  299 (436)
                      |..++..|+|++|+..|++++++.|..            ..+|.++|.+|..+++ +++|+..+++++++.|.       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~~~~~~~~~~   94 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELNQD   94 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhccccccccccc
Confidence            555555666666666666666655442            2456667777766664 77777777777765431       


Q ss_pred             ----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          300 ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG  355 (436)
Q Consensus       300 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  355 (436)
                          ...+++++|                      .+|..+|++++|+..|++++++.|.
T Consensus        95 ~~~~~~~a~~~~g----------------------~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          95 EGKLWISAVYSRA----------------------LALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHhhhH----------------------HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                123556677                      8899999999999999999998654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.97  E-value=4.3e-10  Score=102.28  Aligned_cols=127  Identities=10%  Similarity=-0.026  Sum_probs=64.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821          242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD  321 (436)
Q Consensus       242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  321 (436)
                      .+..|++++|+..|+++++.+|.++.++..++.+|+..|+ +++|++.|+++++++|++..++..++             
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~-~e~A~~~l~~a~~l~P~~~~~~~~l~-------------   71 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLR-------------   71 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHH-------------
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCcHHHHHHHH-------------
Confidence            3445666666666666666666666666666666555553 66666666666666665555555555             


Q ss_pred             HHHHHHHHHhHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821          322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAIL-ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS  392 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~  392 (436)
                               .++...+..+++...+.+... ..|.....+...+.++...|+ +++|+..++++.+..|..+
T Consensus        72 ---------~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd-~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          72 ---------HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-YEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             ---------HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCCCC
T ss_pred             ---------HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCC
Confidence                     333222333333222222111 123333444445555555555 5555555555555555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=7.6e-09  Score=88.20  Aligned_cols=118  Identities=11%  Similarity=-0.025  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821          233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW  312 (436)
Q Consensus       233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~  312 (436)
                      ..+...|..+...|++++|+..|.+|+.+.+.........+.             -.......+.+....++..++    
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~-------------w~~~~r~~l~~~~~~a~~~la----   74 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ-------------FVEPFATALVEDKVLAHTAKA----   74 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST-------------THHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchH-------------HHHHHHHHHHHHHHHHHHHHH----
Confidence            566778888888888888888888888887765432211110             011112223333456667777    


Q ss_pred             HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821          313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ  386 (436)
Q Consensus       313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~  386 (436)
                                        .++...|++++|+.+++++++.+|.+..+|..++.++..+|+ +.+|+..|+++..
T Consensus        75 ------------------~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~  129 (179)
T d2ff4a2          75 ------------------EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVKT  129 (179)
T ss_dssp             ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred             ------------------HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence                              888889999999999999999999999999999999999999 9999999998743

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=5.1e-08  Score=82.88  Aligned_cols=89  Identities=11%  Similarity=0.080  Sum_probs=80.3

Q ss_pred             hHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821          331 LPIQSKGDLEGAEEYFSRAILANPGD----------------------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS  388 (436)
Q Consensus       331 ~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~  388 (436)
                      ......|++++|+..|.+|+.+.+..                      ..++..++.++..+|+ +++|+.+++++++.+
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~~~   97 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAELEALTFEH   97 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhC
Confidence            67778899999999999999886543                      2578999999999999 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821          389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQ  420 (436)
Q Consensus       389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  420 (436)
                      |.+..+|..++.++...|++.+|+..|+++..
T Consensus        98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999843

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.26  E-value=1.1e-05  Score=64.34  Aligned_cols=49  Identities=22%  Similarity=0.283  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh
Q 013821          337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE---LHHDHDKALCYFERAVQA  387 (436)
Q Consensus       337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~d~~eA~~~~~~al~~  387 (436)
                      .++.+|+++|+++.+.  .++.+.+.||.+|..   ..+|+.+|+.+|++|.+.
T Consensus        73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            3455555555555443  344555555555544   112355555555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.1e-05  Score=64.29  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821          282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS  361 (436)
Q Consensus       282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  361 (436)
                      |+++|+.+|+++.+..  ++.+.+.++                      .  ....++++|+.+|+++.+.  .++.+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~----------------------~--~~~~~~~~a~~~~~~aa~~--g~~~a~~   59 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLV----------------------S--NSQINKQKLFQYLSKACEL--NSGNGCR   59 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHH----------------------T--CTTSCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhc----------------------c--ccccCHHHHHHHHhhhhcc--cchhhhh
Confidence            6899999999998774  555566665                      2  2357899999999999875  6789999


Q ss_pred             HHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhh
Q 013821          362 QYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQV  421 (436)
Q Consensus       362 ~la~~~~~~---g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l  421 (436)
                      .||.+|..-   ..|+.+|+.+|+++.+.  .++.+...||.+|..    ..+..+|+.+|+++.++
T Consensus        60 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          60 FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            999998751   23599999999999875  468899999999988    56899999999999886

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=5.3e-06  Score=64.60  Aligned_cols=80  Identities=11%  Similarity=0.019  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc---CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHH
Q 013821          300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---GDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHD  375 (436)
Q Consensus       300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~  375 (436)
                      .....+++|                      +++.+.   .+.++|+.+++.+++.+|.+. +.+++||.+++++|+ |+
T Consensus        34 s~qt~F~YA----------------------w~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd-y~   90 (124)
T d2pqrb1          34 TIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YS   90 (124)
T ss_dssp             CHHHHHHHH----------------------HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HH
T ss_pred             CcchHHHHH----------------------HHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh-HH
Confidence            367888888                      555433   456789999999999998764 899999999999999 99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821          376 KALCYFERAVQASPADSHVLAAYACFL  402 (436)
Q Consensus       376 eA~~~~~~al~~~p~~~~~~~~la~~~  402 (436)
                      +|+.+++++|+++|++..+....-.+.
T Consensus        91 ~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          91 MAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            999999999999999988766555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=4.1e-05  Score=59.41  Aligned_cols=76  Identities=14%  Similarity=-0.005  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKG---DLYRAEDYYNHATMADPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY  307 (436)
Q Consensus       232 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l  307 (436)
                      ..+.+.+|.++.+..   +.++|+..++.+++.+|.+ .+.++.+|..|++++ +|++|..+++++++++|++..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg-dy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            567777777777654   3457788888887777765 367778888877776 48888888888888888877776544


Q ss_pred             H
Q 013821          308 A  308 (436)
Q Consensus       308 a  308 (436)
                      -
T Consensus       114 ~  114 (124)
T d2pqrb1         114 S  114 (124)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.14  Score=48.06  Aligned_cols=189  Identities=9%  Similarity=0.023  Sum_probs=119.4

Q ss_pred             hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821          203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL----QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE  278 (436)
Q Consensus       203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  278 (436)
                      ..+.......+.+.|..++.......+.....+.......    ...+..+.|..++................++.. ..
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~  297 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LG  297 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-HH
Confidence            3444444556788888888888777666654444333333    235667778887777766555544444444443 34


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh------
Q 013821          279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA------  352 (436)
Q Consensus       279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------  352 (436)
                      .+ ++..+...+...-..........+.+|..                      +...|+.++|..+|..+...      
T Consensus       298 ~~-~~~~~~~~~~~l~~~~~~~~r~~YW~gRa----------------------~~~~G~~~~A~~~~~~~a~~~~fYG~  354 (450)
T d1qsaa1         298 TG-DRRGLNTWLARLPMEAKEKDEWRYWQADL----------------------LLERGREAEAKEILHQLMQQRGFYPM  354 (450)
T ss_dssp             HT-CHHHHHHHHHHSCTTGGGSHHHHHHHHHH----------------------HHHTTCHHHHHHHHHHHHTSCSHHHH
T ss_pred             cC-ChHHHHHHHHhcCcccccHHHHHHHHHHH----------------------HHHcCChhhHHHHHHHHhcCCChHHH
Confidence            44 58888877765433223356677888844                      44455555555555544321      


Q ss_pred             ------------C-------CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821          353 ------------N-------PGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED  410 (436)
Q Consensus       353 ------------~-------p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  410 (436)
                                  +       +..   ...-...+..++.+|. ...|...+..++...  +..-...++.+..+.|.++.
T Consensus       355 LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~-~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~  431 (450)
T d1qsaa1         355 VAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNL-DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDL  431 (450)
T ss_dssp             HHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCC-chHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhH
Confidence                        0       000   1123456777889999 999999998876533  46677888999999999999


Q ss_pred             HHHHHHHH
Q 013821          411 DSKSSDQF  418 (436)
Q Consensus       411 A~~~~~~a  418 (436)
                      ||....++
T Consensus       432 aI~a~~~~  439 (450)
T d1qsaa1         432 SVQATIAG  439 (450)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99877765

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.9  Score=42.24  Aligned_cols=92  Identities=11%  Similarity=0.015  Sum_probs=62.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821          336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS  415 (436)
Q Consensus       336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  415 (436)
                      .+..+.|...+........+.......++. ....++ +..+...+...-..........+.+|..+..+|+.++|...|
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~-~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~  342 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL  342 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCC-hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence            456677777777766555443333334444 445567 888888876543222234577899999999999999999999


Q ss_pred             HHHHhhCCCChhHHh
Q 013821          416 DQFQQVAPIRQGAVT  430 (436)
Q Consensus       416 ~~al~l~p~~~~~~~  430 (436)
                      .++.. .+.|.+-.+
T Consensus       343 ~~~a~-~~~fYG~LA  356 (450)
T d1qsaa1         343 HQLMQ-QRGFYPMVA  356 (450)
T ss_dssp             HHHHT-SCSHHHHHH
T ss_pred             HHHhc-CCChHHHHH
Confidence            99876 456766443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.33  E-value=0.079  Score=48.02  Aligned_cols=169  Identities=14%  Similarity=0.053  Sum_probs=90.0

Q ss_pred             HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821          204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ  283 (436)
Q Consensus       204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~  283 (436)
                      .|....+.|.|+.|..+|...        .-+-.+..++...++++.|.+++.++     +....|..+...+..... .
T Consensus        20 i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e-~   85 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE-F   85 (336)
T ss_dssp             ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH-H
Confidence            344556667777777777643        11344556667777888877777655     466677776666555432 2


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821          284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY  363 (436)
Q Consensus       284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  363 (436)
                      .-|.. ....   .-.+++-.....                      ..|...|.+++.+.+++.++...+.+...+..+
T Consensus        86 ~la~i-~~~~---~~~~~d~l~~~v----------------------~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L  139 (336)
T d1b89a_          86 RLAQM-CGLH---IVVHADELEELI----------------------NYYQDRGYFEELITMLEAALGLERAHMGMFTEL  139 (336)
T ss_dssp             HHHHH-TTTT---TTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred             HHHHH-HHHH---hhcCHHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHcCCccchHHHHHH
Confidence            22111 0000   011222222233                      566677888888888888877777777777778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH-HHhCCCC-------HHHHHHHHHHHHHCCChHHHHHH
Q 013821          364 AKLVWELHHDHDKALCYFERA-VQASPAD-------SHVLAAYACFLWETEEDEDDSKS  414 (436)
Q Consensus       364 a~~~~~~g~d~~eA~~~~~~a-l~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~  414 (436)
                      +.++.+.+  .++-++.++.. -..++..       ...|..+..+|.+.|++++|+..
T Consensus       140 ~~lyak~~--~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         140 AILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhC--hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence            77766542  34444444332 1111110       12345566667777777777554

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.76  E-value=1.9  Score=36.25  Aligned_cols=45  Identities=7%  Similarity=-0.061  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHH
Q 013821          232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA--DPG-DGESWMQYAKLV  276 (436)
Q Consensus       232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~  276 (436)
                      -+-+..+|.+..+.++|++.+.+.+++++.  +|. +.+-...+..+|
T Consensus         4 Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvay   51 (236)
T d1o9da_           4 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY   51 (236)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            345667777777888888888888888776  444 444444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.21  E-value=3.6  Score=36.45  Aligned_cols=102  Identities=6%  Similarity=-0.053  Sum_probs=65.0

Q ss_pred             hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHc
Q 013821          202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELH  280 (436)
Q Consensus       202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~  280 (436)
                      ..+..++...++++.|..++.+.     +....|..+...+....+..-|..     +.. .-.++.-.......+...+
T Consensus        44 ~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~  113 (336)
T d1b89a_          44 GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRG  113 (336)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcC
Confidence            33455677888888888887766     566777777777777666554321     111 1123444444454545544


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821          281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEM  314 (436)
Q Consensus       281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  314 (436)
                       .+++.+.+++.++...+.+...+..++.++.+.
T Consensus       114 -~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_         114 -YFEELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             -CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             -ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence             478888888888777777777777777766554

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.95  E-value=4.6  Score=33.60  Aligned_cols=30  Identities=13%  Similarity=0.056  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821          235 LRNYAQLLQKKGDLYRAEDYYNHATMADPG  264 (436)
Q Consensus       235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~  264 (436)
                      +..+|.+..+.++|++.+.+.+++++.++.
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~e   35 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAE   35 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCC
Confidence            455666666666666666666666666655

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=81.34  E-value=13  Score=30.50  Aligned_cols=26  Identities=12%  Similarity=0.055  Sum_probs=13.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821          236 RNYAQLLQKKGDLYRAEDYYNHATMA  261 (436)
Q Consensus       236 ~~la~~~~~~g~~~~A~~~~~~al~~  261 (436)
                      ..+|.++.+.|+|++..++.++++++
T Consensus         8 ~y~Akl~eqa~ryddm~~~mK~~v~~   33 (220)
T d2o8pa1           8 KYRAQVFEWGGCFDKMFEALKSLIYL   33 (220)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34455555555555555555555544