Citrus Sinensis ID: 013839
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 435 | 2.2.26 [Sep-21-2011] | |||||||
| P46643 | 430 | Aspartate aminotransferas | yes | no | 0.914 | 0.925 | 0.713 | 1e-178 | |
| P00507 | 430 | Aspartate aminotransferas | yes | no | 0.912 | 0.923 | 0.526 | 1e-120 | |
| P05202 | 430 | Aspartate aminotransferas | yes | no | 0.912 | 0.923 | 0.523 | 1e-120 | |
| P00505 | 430 | Aspartate aminotransferas | yes | no | 0.912 | 0.923 | 0.523 | 1e-119 | |
| Q4R559 | 430 | Aspartate aminotransferas | N/A | no | 0.912 | 0.923 | 0.523 | 1e-118 | |
| Q5REB0 | 430 | Aspartate aminotransferas | yes | no | 0.912 | 0.923 | 0.521 | 1e-117 | |
| P00508 | 423 | Aspartate aminotransferas | yes | no | 0.912 | 0.938 | 0.508 | 1e-117 | |
| Q28F67 | 427 | Aspartate aminotransferas | yes | no | 0.942 | 0.960 | 0.485 | 1e-116 | |
| P08907 | 401 | Aspartate aminotransferas | yes | no | 0.912 | 0.990 | 0.508 | 1e-116 | |
| P12344 | 430 | Aspartate aminotransferas | yes | no | 0.905 | 0.916 | 0.515 | 1e-115 |
| >sp|P46643|AAT1_ARATH Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 625 bits (1612), Expect = e-178, Method: Compositional matrix adjust.
Identities = 284/398 (71%), Positives = 335/398 (84%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW V PA KDPI GVTEAFLADPSP K+N+GVGAYRDD G+PVVL+CVREAE ++AGS
Sbjct: 32 WWKSVEPAPKDPILGVTEAFLADPSPEKVNVGVGAYRDDNGKPVVLECVREAEKRLAGST 91
Query: 85 FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
F+E + S KMV+ ++KL YG +S+ +K+ R A VQ LSGTGACRLFA+FQ+RF P S
Sbjct: 92 FMEYLPMGGSAKMVDLTLKLAYGDNSEFIKDKRIAAVQTLSGTGACRLFADFQKRFSPGS 151
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
IY P PTWSNHHNIW+DAQ+P++TYHYY P++K LDF+ALMDD+KNAP+ SFFLLH A
Sbjct: 152 QIYIPVPTWSNHHNIWKDAQVPQKTYHYYHPETKGLDFSALMDDVKNAPEGSFFLLHACA 211
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTGVDPTEEQWREIS FK K HF FFDMAYQGFASGD +DA++IRIFLED H IG
Sbjct: 212 HNPTGVDPTEEQWREISQLFKAKKHFAFFDMAYQGFASGDPARDAKSIRIFLEDGHHIGI 271
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
+QSYAK+MGLYG RVGCLS+LC D KQA A++SQ+QQ+AR MY +PP+HG LV+TIL D
Sbjct: 272 SQSYAKNMGLYGQRVGCLSVLCEDPKQAVAVKSQLQQLARPMYSNPPLHGAQLVSTILED 331
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
P LKSLW+ EVK+MADRI RTTLR++LEKLGS L+WEH+T Q+GMFC+SGLTP QVDR
Sbjct: 332 PELKSLWLKEVKVMADRIIGMRTTLRESLEKLGSPLSWEHVTKQIGMFCYSGLTPEQVDR 391
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRS 422
L E+HIYMT++GRISMAGVTTGNV YLANAIHEVT+S
Sbjct: 392 LTSEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVTKS 429
|
Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1 |
| >sp|P00507|AATM_RAT Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/399 (52%), Positives = 275/399 (68%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA+IAG
Sbjct: 32 WWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAGKN 91
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + S +L G++S+V+K GR VQ +SGTGA R+ A F +RF
Sbjct: 92 LDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKF 151
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S ++ P P+W NH I+RDA + + Y YYDP + DF+ ++DI P+ S LLH
Sbjct: 152 SRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHA 211
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP EQW+E++ K K F FFDMAYQGFASGD DKDA A+R F+E +
Sbjct: 212 CAHNPTGVDPRPEQWKEMAAVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINV 271
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
QSYAK+MGLYG RVG +++C D+++A + SQ++ + R +Y +PP++G + ATIL
Sbjct: 272 CLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATIL 331
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P+L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+GL P QV
Sbjct: 332 TSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQV 391
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF +YMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 392 ERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P05202|AATM_MOUSE Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/399 (52%), Positives = 275/399 (68%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA+IA
Sbjct: 32 WWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN 91
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + + S +L G++++V+K GR VQ +SGTGA R+ A F +RF
Sbjct: 92 LDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKF 151
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S ++ P P+W NH I+RDA + + Y YYDP + DF+ ++DI P+ S LLH
Sbjct: 152 SRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHA 211
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP EQW+EI+ K K F FFDMAYQGFASGD DKDA A+R F+E +
Sbjct: 212 CAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINV 271
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
QSYAK+MGLYG RVG +++C D+++A + SQ++ + R +Y +PP++G + ATIL
Sbjct: 272 CLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATIL 331
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P+L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+GL P QV
Sbjct: 332 TSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQV 391
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF +YMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 392 ERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00505|AATM_HUMAN Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/399 (52%), Positives = 272/399 (68%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA+IA
Sbjct: 32 WWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN 91
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + + S +L G++S+V+K GR VQ +SGTGA R+ A F +RF
Sbjct: 92 LDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKF 151
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S ++ P PTW NH I+RDA + + Y YYDP + DF ++DI P+ S LLH
Sbjct: 152 SRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHA 211
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP EQW+EI+ K + F FFDMAYQGFASGD DKDA A+R F+E +
Sbjct: 212 CAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINV 271
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
QSYAK+MGLYG RVG +++C D+ +A + SQ++ + R MY +PP++G + A IL
Sbjct: 272 CLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAIL 331
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P+L+ W+ EVK+MADRI RT L NL+K GS+ NW+HIT+Q+GMFCF+GL P QV
Sbjct: 332 NTPDLRKQWLQEVKVMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTGLKPEQV 391
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGVT+ NV YLA+AIH+VT+
Sbjct: 392 ERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVTK 430
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q4R559|AATM_MACFA Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/399 (52%), Positives = 272/399 (68%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA+IA
Sbjct: 32 WWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN 91
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + + S +L G++S+V+K GR VQ +SGTGA R+ A F +RF
Sbjct: 92 LDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKF 151
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S ++ P P+W NH I+RDA + + Y YYDP + DF ++DI P+ S LLH
Sbjct: 152 SRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHA 211
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP EQW+EI+ K + F FFDMAYQGFASGD DKDA A+R F+E +
Sbjct: 212 CAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINV 271
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
QSYAK+MGLYG RVG +++C D+ +A + SQ++ + R MY +PP++G + A IL
Sbjct: 272 CLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAIL 331
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P+L+ W+ EVK MADRI RT L NL+K GS+ NW+HIT+Q+GMFCF+GL P QV
Sbjct: 332 NTPDLRKQWLQEVKGMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTGLKPEQV 391
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 392 ERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q5REB0|AATM_PONAB Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/399 (52%), Positives = 271/399 (67%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA+IA
Sbjct: 32 WWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN 91
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + + S +L G++S+V+K GR VQ +SGTGA R+ A F +RF
Sbjct: 92 LDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKF 151
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S ++ P P+W NH I+RDA + + Y YYDP + DF ++DI P+ S LLH
Sbjct: 152 SRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHA 211
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP EQW+EI+ K + F FFDMAYQGFASGD DKDA A+R F+E +
Sbjct: 212 CAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINV 271
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
QSYAK+MGLYG RVG +++C D+ +A + SQ++ + R MY +PP++G + A IL
Sbjct: 272 CLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAIL 331
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P+L+ W+ EVK MADRI RT L NL+K GS+ NW+HIT+Q+GMFCF+GL P QV
Sbjct: 332 NTPDLRKQWLQEVKGMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTGLKPEQV 391
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGVT+ NV YLA+AIH+VT+
Sbjct: 392 ERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVTK 430
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00508|AATM_CHICK Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/399 (50%), Positives = 270/399 (67%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+ VL CVR+AEA IA +
Sbjct: 25 WWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKSYVLNCVRKAEAMIAAKK 84
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + S +L G++S+ K GR VQ +SGTG+ R+ A F +RF
Sbjct: 85 MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKF 144
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S +Y P P+W NH I+RDA + + Y YYDP + SLDF M+DI P+ S LLH
Sbjct: 145 SRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA 204
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP +EQW+E++ K + +FDMAYQGFASGD+++DA A+R F+E +
Sbjct: 205 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 264
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
+QSYAK+MGLYG R G +++C D+++A + SQ++ + R MY +PP++G + + IL
Sbjct: 265 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 324
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+GL P QV
Sbjct: 325 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQV 384
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGV + NV YLA+AIH+VT+
Sbjct: 385 ERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 423
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. May facilitate cellular uptake of long-chain free fatty acids. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q28F67|AATM_XENTR Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/414 (48%), Positives = 274/414 (66%), Gaps = 4/414 (0%)
Query: 12 RCS--VHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVV 69
RC + R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P V
Sbjct: 14 RCQPCLAAVQGRASSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYV 73
Query: 70 LQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128
L VR+AEA++A E + + S +L G++ D ++ GR VQ +SGTG
Sbjct: 74 LSSVRKAEAQLASKNLDKEYLPIGGLAEFARASAQLALGENCDAIQSGRFITVQTISGTG 133
Query: 129 ACRLFAEFQRRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMD 187
+ R+ A F +RF+ S +Y P P+W NH I+RDA + + Y YYDP + DF +D
Sbjct: 134 SLRVGANFLQRFYKYSRDVYLPKPSWGNHTPIFRDAGLEVKGYRYYDPKTCGFDFTGALD 193
Query: 188 DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247
DI P+ S L H AHNPTGVDP +EQW+E++ K + FPFFDMAYQGFASGD ++
Sbjct: 194 DISKIPEQSIILFHACAHNPTGVDPKQEQWKELAALIKSRRLFPFFDMAYQGFASGDTNR 253
Query: 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY 307
DA A+R F+++ + +QSYAK+MGLYG RVG +++C D+++A + SQ++ + R MY
Sbjct: 254 DAWAVRHFIQEGINVVLSQSYAKNMGLYGERVGAFTVVCSDAEEAKRVESQLKILIRPMY 313
Query: 308 GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367
+PP++G + A IL+ P+L+ W+ EVK MA+RI R L NL+K GS NW+HI++
Sbjct: 314 SNPPLNGARIAAAILTQPDLRKEWLQEVKGMANRIISMREQLVSNLKKEGSIHNWQHISD 373
Query: 368 QLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
Q+GMFCF+GL P QV+RL KEF IYMT+DGRIS+AGVT+ N YLA+AIH+VT+
Sbjct: 374 QIGMFCFTGLRPEQVERLIKEFSIYMTKDGRISVAGVTSANNGYLAHAIHQVTK 427
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. May facilitate cellular uptake of long-chain free fatty acids. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P08907|AATM_HORSE Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/399 (50%), Positives = 268/399 (67%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEA+ D + K+NLGVGAYRDD G+P VL VR+AEA+IA
Sbjct: 3 WWAHVEMGPPDPILGVTEAYKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN 62
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + + S +L G++S+ +K GR VQ++SGTGA R+ A F +RF
Sbjct: 63 LDKEYLPIGGLAEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKF 122
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S ++ P P+W NH I+RDA + Y YYDP + D ++DI P S LLH
Sbjct: 123 SRDVFLPKPSWGNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILLHA 182
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP EQW+EI+ K F FFDMAYQGFASGD +KDA A+R F+E +
Sbjct: 183 CAHNPTGVDPRPEQWKEIATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRYFIEQGINV 242
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
QSYAK+MGLYG RVG +++C D+ +A + SQ++ + R +Y +PP++G + +TIL
Sbjct: 243 CLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPLYSNPPLNGARIASTIL 302
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P+L+ W+ EVK MADRI RT L NL+K GSS +W+HI +Q+GMFCF+GL P QV
Sbjct: 303 TSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHSWQHIADQIGMFCFTGLKPEQV 362
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 363 ERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 401
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Equus caballus (taxid: 9796) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P12344|AATM_BOVIN Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/396 (51%), Positives = 271/396 (68%), Gaps = 2/396 (0%)
Query: 28 HVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-L 86
HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA+IA
Sbjct: 35 HVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDK 94
Query: 87 ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESH- 145
E + + + + S +L G++++V+K GR VQ +SGTGA R+ A F +RF S
Sbjct: 95 EYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRD 154
Query: 146 IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205
++ P PTW NH I+RDA + ++Y YYDP + DF ++DI P S LLH AH
Sbjct: 155 VFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAH 214
Query: 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265
NPTGVDP EQW+E++ K F FFDMAYQGFASGD +KDA A+R F+E +
Sbjct: 215 NPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLC 274
Query: 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325
QSYAK+MGLYG RVG +++C D+++A + SQ++ + R MY +PP++G + +TIL+ P
Sbjct: 275 QSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPINGARIASTILTSP 334
Query: 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRL 385
+L+ W+ EVK MADRI RT L NL+K GSS NW+HI +Q+GMFC++GL P QV+RL
Sbjct: 335 DLRKQWLHEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIIDQIGMFCYTGLKPEQVERL 394
Query: 386 AKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
KEF IYMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 395 TKEFSIYMTKDGRISVAGVTSGNVAYLAHAIHQVTK 430
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 435 | ||||||
| 224087841 | 422 | predicted protein [Populus trichocarpa] | 0.965 | 0.995 | 0.774 | 0.0 | |
| 359481247 | 427 | PREDICTED: aspartate aminotransferase, m | 0.960 | 0.978 | 0.774 | 0.0 | |
| 255581007 | 424 | aspartate aminotransferase, putative [Ri | 0.954 | 0.978 | 0.771 | 0.0 | |
| 449464416 | 421 | PREDICTED: aspartate aminotransferase, m | 0.960 | 0.992 | 0.715 | 0.0 | |
| 218198356 | 430 | hypothetical protein OsI_23308 [Oryza sa | 0.958 | 0.969 | 0.712 | 0.0 | |
| 53792951 | 430 | aspartate transaminase precursor, mitoch | 0.958 | 0.969 | 0.710 | 0.0 | |
| 115468452 | 463 | Os06g0548000 [Oryza sativa Japonica Grou | 0.958 | 0.900 | 0.710 | 0.0 | |
| 225446660 | 423 | PREDICTED: aspartate aminotransferase, m | 0.914 | 0.940 | 0.726 | 0.0 | |
| 2696240 | 430 | aspartate aminotransferase [Oryza sativa | 0.958 | 0.969 | 0.708 | 0.0 | |
| 449459088 | 428 | PREDICTED: aspartate aminotransferase, m | 0.958 | 0.974 | 0.702 | 0.0 |
| >gi|224087841|ref|XP_002308245.1| predicted protein [Populus trichocarpa] gi|222854221|gb|EEE91768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/421 (77%), Positives = 375/421 (89%), Gaps = 1/421 (0%)
Query: 1 MYWRYLTRAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAY 60
M+ +LTR +R C + ++ + WWDHVAPA KDPI VTEAFLAD SP KINLGVGAY
Sbjct: 1 MWKCFLTRTSR-CFSTSAGNKALKWWDHVAPAPKDPITSVTEAFLADASPTKINLGVGAY 59
Query: 61 RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAG 120
RDD+G+PVVLQCVREAEAKIAG ES+S++VS+K+VEESVKLVYG +SD++KEGR AG
Sbjct: 60 RDDEGKPVVLQCVREAEAKIAGCIGRESVSSAVSSKLVEESVKLVYGMNSDIIKEGRFAG 119
Query: 121 VQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180
VQALSGTGACRLFAEFQRRF+P S IY PTWSNHHNIWRDA +PERT+HYY PDSK L
Sbjct: 120 VQALSGTGACRLFAEFQRRFYPGSQIYMTGPTWSNHHNIWRDALVPERTFHYYHPDSKGL 179
Query: 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF 240
+F+ALMDD+KNAPD SFFLLHP AHNPTGVDPTEEQWREISY FKVK HFPFFDMAYQGF
Sbjct: 180 NFSALMDDVKNAPDGSFFLLHPCAHNPTGVDPTEEQWREISYLFKVKNHFPFFDMAYQGF 239
Query: 241 ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ 300
ASGDLD+DAQ+IRIF+ED +LIGCAQS+AK+MGLYGHRVGCL++LC D+KQA AI+SQ+Q
Sbjct: 240 ASGDLDRDAQSIRIFVEDGNLIGCAQSFAKNMGLYGHRVGCLNVLCNDAKQAVAIKSQLQ 299
Query: 301 QIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360
QIARAMY SPPVHGILLV+ ILSDPN+K+LW++EVK+MA+RIQ RTTLR++LE+L SSL
Sbjct: 300 QIARAMYSSPPVHGILLVSGILSDPNMKALWVEEVKVMANRIQSLRTTLRKSLEQLSSSL 359
Query: 361 NWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420
NWEHITNQ+GMFCFSGLTP QVDRL + FHIYMT DGR+SMAGVTTGNV+YLANAIHEVT
Sbjct: 360 NWEHITNQVGMFCFSGLTPEQVDRLQRGFHIYMTLDGRMSMAGVTTGNVSYLANAIHEVT 419
Query: 421 R 421
+
Sbjct: 420 K 420
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481247|ref|XP_002266426.2| PREDICTED: aspartate aminotransferase, mitochondrial-like [Vitis vinifera] gi|297735570|emb|CBI18064.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/421 (77%), Positives = 368/421 (87%), Gaps = 3/421 (0%)
Query: 4 RYLTRAAR---RCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAY 60
R + + AR R +TS+ + WWDHV A KDPI VTEAFL+D SP KINLGVGAY
Sbjct: 5 RMMIKWARDTVRRRFMSTSAAAIDWWDHVGHAPKDPIMSVTEAFLSDTSPNKINLGVGAY 64
Query: 61 RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAG 120
RDD GRPVVLQCVR+ E KIAG+EFLES+SASVS+K+VEESVKL+YGK++D +KEGR AG
Sbjct: 65 RDDDGRPVVLQCVRDGEVKIAGTEFLESVSASVSSKLVEESVKLIYGKEADFIKEGRFAG 124
Query: 121 VQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180
VQALSGTGACRLFAEFQRRF+P+S IY P PTWSNHHNIWRDAQ+P RT+HYY PDSK L
Sbjct: 125 VQALSGTGACRLFAEFQRRFYPQSRIYLPIPTWSNHHNIWRDAQVPGRTFHYYHPDSKGL 184
Query: 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF 240
FAALMDDIKNAPD SFFLLHP AHNPTGVDPTEEQWREIS FKVK HFPFFDMAYQGF
Sbjct: 185 HFAALMDDIKNAPDRSFFLLHPCAHNPTGVDPTEEQWREISNLFKVKNHFPFFDMAYQGF 244
Query: 241 ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ 300
ASGDLDKDA+AIRIFLED HLIGCAQS+AK+MGLYGHRVGCLS+LCVD+KQA AI+SQ+Q
Sbjct: 245 ASGDLDKDAKAIRIFLEDGHLIGCAQSFAKNMGLYGHRVGCLSVLCVDAKQAVAIKSQLQ 304
Query: 301 QIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360
I RAMY SPPVHGILLV+TILSDP+LK LW E+K+MA+RI R R+TL ++L+KLGS L
Sbjct: 305 HITRAMYSSPPVHGILLVSTILSDPHLKELWKKELKVMANRIHRMRSTLHESLKKLGSPL 364
Query: 361 NWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420
NW+H+TNQ+GMFCFSGL+P QV+RL KEFHIYMT DGRISMAGVTT NV+YLANAIHEVT
Sbjct: 365 NWDHMTNQVGMFCFSGLSPDQVNRLVKEFHIYMTYDGRISMAGVTTSNVSYLANAIHEVT 424
Query: 421 R 421
+
Sbjct: 425 K 425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581007|ref|XP_002531321.1| aspartate aminotransferase, putative [Ricinus communis] gi|223529089|gb|EEF31071.1| aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 366/415 (88%)
Query: 11 RRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVL 70
RR T+++R + WWDHV PA KDPI VTEAFLAD P KINLGVGAYRDD+G+PVVL
Sbjct: 9 RRSFFSTSTNRALPWWDHVGPAPKDPITSVTEAFLADTFPTKINLGVGAYRDDEGKPVVL 68
Query: 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130
QCVREAE KIAG +FLESIS++VS+K+VEESVKLVYGKDS+VVKEGR AGVQALSGTGAC
Sbjct: 69 QCVREAETKIAGCDFLESISSAVSSKLVEESVKLVYGKDSEVVKEGRFAGVQALSGTGAC 128
Query: 131 RLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK 190
RLFAEFQRRF+PES IY PDPTWSNHHNIWRDAQ+P T+ YY PDSK L+F AL+DD+K
Sbjct: 129 RLFAEFQRRFYPESGIYLPDPTWSNHHNIWRDAQVPCSTFSYYHPDSKGLNFNALIDDVK 188
Query: 191 NAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250
NAPD SFFLLHP AHNPTGVDPT EQWREIS+QFKVK HFPFFDMAYQGFASGD D DA
Sbjct: 189 NAPDGSFFLLHPCAHNPTGVDPTVEQWREISHQFKVKNHFPFFDMAYQGFASGDFDIDAL 248
Query: 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSP 310
+IRIFLED HLIGCAQS+AK+MGLYGHRVGCLSILC D+KQA AI SQ+Q+IARAMY SP
Sbjct: 249 SIRIFLEDGHLIGCAQSFAKNMGLYGHRVGCLSILCNDTKQAVAINSQLQKIARAMYSSP 308
Query: 311 PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLG 370
PVHGI LV+T++SDP+ K LW+ EVK MA+RI++ RT L+++L++LGSSLNWEHITNQ+G
Sbjct: 309 PVHGISLVSTVMSDPDTKELWVKEVKGMANRIRQMRTNLQESLKQLGSSLNWEHITNQVG 368
Query: 371 MFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSEQE 425
MFCFSGLTP +V+R+ KEFH+YMT DGR+SMAGVTT NV YLANAIHEVT+S Q+
Sbjct: 369 MFCFSGLTPKEVERIVKEFHVYMTLDGRMSMAGVTTSNVKYLANAIHEVTKSSQK 423
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464416|ref|XP_004149925.1| PREDICTED: aspartate aminotransferase, mitochondrial-like [Cucumis sativus] gi|449510847|ref|XP_004163782.1| PREDICTED: aspartate aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/418 (71%), Positives = 356/418 (85%)
Query: 3 WRYLTRAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRD 62
WR L R S T+ +GW+DHV PA KDPI GVTEAFLADPSP KINLGVGAYRD
Sbjct: 2 WRSLVPTRRCISTSTSKPLILGWFDHVKPAPKDPIIGVTEAFLADPSPNKINLGVGAYRD 61
Query: 63 DKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122
D+G+PVVLQCVR+AE+KI GSEFLESISA+VS++ VEESV+L+YGK+SDV+KE R AG+Q
Sbjct: 62 DEGKPVVLQCVRDAESKITGSEFLESISAAVSSRFVEESVELIYGKNSDVMKERRFAGLQ 121
Query: 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDF 182
ALSGTGACRLFAEFQR FH + I+ PDPTWSNHHNIWRDAQ+P RTY YY DSK L+F
Sbjct: 122 ALSGTGACRLFAEFQRHFHHDVPIFLPDPTWSNHHNIWRDAQVPVRTYRYYHHDSKGLNF 181
Query: 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242
A MDDIKNAP+ SFFLLHP AHNPTG+DPT+EQWREIS Q VK HFPFFDMAYQGFAS
Sbjct: 182 GAFMDDIKNAPEGSFFLLHPCAHNPTGIDPTDEQWREISNQLMVKHHFPFFDMAYQGFAS 241
Query: 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302
GDL+KDA+AIRIFLED H++GCAQS+AK+MGLYGHRVGCLS+L D KQA +RSQ+Q++
Sbjct: 242 GDLEKDAKAIRIFLEDGHIVGCAQSFAKNMGLYGHRVGCLSVLAKDQKQAMIVRSQLQRL 301
Query: 303 ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362
ARAMY SPP+HG+LLV+TILSDP LK+ WI+E+K+M DRI+ R +L +LEKL S LNW
Sbjct: 302 ARAMYSSPPIHGVLLVSTILSDPLLKAEWIEELKVMVDRIRSMRASLFDHLEKLSSPLNW 361
Query: 363 EHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420
+HI Q+GMFC+SGL Q+D+LA++FHIYMT++GR+SMAGVTTGNV+YLA A+H+V+
Sbjct: 362 DHIVKQVGMFCYSGLNCEQIDQLARDFHIYMTKNGRMSMAGVTTGNVSYLAAAMHQVS 419
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218198356|gb|EEC80783.1| hypothetical protein OsI_23308 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/418 (71%), Positives = 353/418 (84%), Gaps = 1/418 (0%)
Query: 7 TRAARRCSVHTTSSRTVG-WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKG 65
T ARR + ++R++ W+ HV PAAKDPI GVTEAFLADPSP K+N+GVGAYRDD G
Sbjct: 13 TPVARRRLMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSG 72
Query: 66 RPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125
+PVVL+CVREAE +IAGS +E + S KM+EES+KL YG++ + +K+ R A VQALS
Sbjct: 73 KPVVLECVREAERRIAGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALS 132
Query: 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185
GTGACRLFA+FQ+RF P+S IY P PTW+NHHNIWRDAQ+P++T+ YY P+S+ LDFA L
Sbjct: 133 GTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGL 192
Query: 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245
MDDIKNAPD SFFLLH AHNPTGVDP+EEQWREIS+QFKVK HFPFFDMAYQGFASGD
Sbjct: 193 MDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDP 252
Query: 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA 305
++DA+AIRIFLED H IGCAQSYAK+MGLYG R GCLSILC D QA A++SQ+QQIAR
Sbjct: 253 ERDAKAIRIFLEDGHQIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARP 312
Query: 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365
MY +PPVHG L+V+TIL DP LKSLW+ EVK MADRI RT L++NLEKLGS ++WEHI
Sbjct: 313 MYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHI 372
Query: 366 TNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSE 423
TNQ+GMFC+SG+TP QVDRL KEFHIYMT++GRISMAGVTTGNV YLANAIHEVT+++
Sbjct: 373 TNQIGMFCYSGMTPEQVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 430
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|53792951|dbj|BAD54126.1| aspartate transaminase precursor, mitochondrial [Oryza sativa Japonica Group] gi|125597512|gb|EAZ37292.1| hypothetical protein OsJ_21631 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/418 (71%), Positives = 353/418 (84%), Gaps = 1/418 (0%)
Query: 7 TRAARRCSVHTTSSRTVG-WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKG 65
T ARR + ++R++ W+ HV PAAKDPI GVTEAFLADPSP K+N+GVGAYRDD G
Sbjct: 13 TPVARRRLMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSG 72
Query: 66 RPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125
+PVVL+CVREAE +IAGS +E + S KM+EES+KL YG++ + +K+ R A VQALS
Sbjct: 73 KPVVLECVREAERRIAGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALS 132
Query: 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185
GTGACRLFA+FQ+RF P+S IY P PTW+NHHNIWRDAQ+P++T+ YY P+S+ LDFA L
Sbjct: 133 GTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGL 192
Query: 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245
MDDIKNAPD SFFLLH AHNPTGVDP+EEQWREIS+QFKVK HFPFFDMAYQGFASGD
Sbjct: 193 MDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDP 252
Query: 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA 305
++DA+AIRIFLED H IGCAQSYAK+MGLYG R GCLSILC D QA A++SQ+QQIAR
Sbjct: 253 ERDAKAIRIFLEDGHQIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARP 312
Query: 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365
+Y +PPVHG L+V+TIL DP LKSLW+ EVK MADRI RT L++NLEKLGS ++WEHI
Sbjct: 313 LYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHI 372
Query: 366 TNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSE 423
TNQ+GMFC+SG+TP QVDRL KEFHIYMT++GRISMAGVTTGNV YLANAIHEVT+++
Sbjct: 373 TNQIGMFCYSGMTPEQVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 430
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115468452|ref|NP_001057825.1| Os06g0548000 [Oryza sativa Japonica Group] gi|113595865|dbj|BAF19739.1| Os06g0548000 [Oryza sativa Japonica Group] gi|215704851|dbj|BAG94879.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/418 (71%), Positives = 353/418 (84%), Gaps = 1/418 (0%)
Query: 7 TRAARRCSVHTTSSRTVG-WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKG 65
T ARR + ++R++ W+ HV PAAKDPI GVTEAFLADPSP K+N+GVGAYRDD G
Sbjct: 46 TPVARRRLMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSG 105
Query: 66 RPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125
+PVVL+CVREAE +IAGS +E + S KM+EES+KL YG++ + +K+ R A VQALS
Sbjct: 106 KPVVLECVREAERRIAGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALS 165
Query: 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185
GTGACRLFA+FQ+RF P+S IY P PTW+NHHNIWRDAQ+P++T+ YY P+S+ LDFA L
Sbjct: 166 GTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGL 225
Query: 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245
MDDIKNAPD SFFLLH AHNPTGVDP+EEQWREIS+QFKVK HFPFFDMAYQGFASGD
Sbjct: 226 MDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDP 285
Query: 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA 305
++DA+AIRIFLED H IGCAQSYAK+MGLYG R GCLSILC D QA A++SQ+QQIAR
Sbjct: 286 ERDAKAIRIFLEDGHQIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARP 345
Query: 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365
+Y +PPVHG L+V+TIL DP LKSLW+ EVK MADRI RT L++NLEKLGS ++WEHI
Sbjct: 346 LYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHI 405
Query: 366 TNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSE 423
TNQ+GMFC+SG+TP QVDRL KEFHIYMT++GRISMAGVTTGNV YLANAIHEVT+++
Sbjct: 406 TNQIGMFCYSGMTPEQVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 463
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446660|ref|XP_002281764.1| PREDICTED: aspartate aminotransferase, mitochondrial [Vitis vinifera] gi|302143448|emb|CBI22009.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 289/398 (72%), Positives = 343/398 (86%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW V PAAKDPI GVTEAFLADPSP K+N+GVGAYRDD G+PVVL+CVREAE +IAG
Sbjct: 25 WWGSVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGKL 84
Query: 85 FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
+E + S MVEE++KL YG++S+ +K+ R A VQALSGTGACRLFA+FQ+RF P+S
Sbjct: 85 NMEYLPMGGSVNMVEETLKLAYGENSEFIKDKRIAAVQALSGTGACRLFADFQKRFRPDS 144
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
IY P PTW+NHHNIWRDAQ+P+RT+HYY P++K LDFA+LMDD+KNAP+ SFFLLH A
Sbjct: 145 QIYIPVPTWANHHNIWRDAQVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACA 204
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTGVDP+EEQW+EISYQFKVKGHF FFDMAYQGFASGD ++DA++I+IFLED HLIG
Sbjct: 205 HNPTGVDPSEEQWKEISYQFKVKGHFAFFDMAYQGFASGDPERDAKSIKIFLEDGHLIGI 264
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
AQSYAK+MGLYG RVGCLS+LC D KQA A++SQ+QQIAR MY +PPV G L+V+TIL D
Sbjct: 265 AQSYAKNMGLYGQRVGCLSLLCEDEKQAVAVKSQLQQIARPMYSNPPVQGALIVSTILGD 324
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
P LK LW+ EVK+MADRI RT LR+NLEKLGS L+WEHITNQ+GMFC+SGLTP QVDR
Sbjct: 325 PELKKLWLKEVKVMADRIIGMRTALRENLEKLGSPLSWEHITNQIGMFCYSGLTPEQVDR 384
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRS 422
+ EFHIYMT++GRISMAG+TTGNV+YLANAIHEV++S
Sbjct: 385 MTNEFHIYMTRNGRISMAGITTGNVSYLANAIHEVSKS 422
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2696240|dbj|BAA23815.1| aspartate aminotransferase [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/418 (70%), Positives = 352/418 (84%), Gaps = 1/418 (0%)
Query: 7 TRAARRCSVHTTSSRTVG-WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKG 65
T ARR + ++R++ W+ HV PAAKDPI GVTEAFLADPSP K+N+GVGAYRDD G
Sbjct: 13 TPVARRRLMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSG 72
Query: 66 RPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125
+PVVL+CVREA +IAGS +E + S KM+EES+KL YG++ + +K+ R A VQALS
Sbjct: 73 KPVVLECVREAGRRIAGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALS 132
Query: 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185
GTGACRLFA+FQ+RF P+S IY P PTW+NHHNIWRDAQ+P++T+ YY P+S+ LDFA L
Sbjct: 133 GTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGL 192
Query: 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245
MDDIKNAPD SFFLLH AHNPTGVDP+EEQWREIS+QFKVK HFPFFDMAYQGFASGD
Sbjct: 193 MDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDP 252
Query: 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA 305
++DA+AIRIFLED H IGCAQSYAK+MGLYG R GCLSILC D QA A++SQ+QQIAR
Sbjct: 253 ERDAKAIRIFLEDGHQIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARP 312
Query: 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365
+Y +PPVHG L+V+TIL DP LKSLW+ EVK MADRI RT L++NLEKLGS ++WEHI
Sbjct: 313 LYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHI 372
Query: 366 TNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSE 423
TNQ+GMFC+SG+TP QVDRL KEFHIYMT++GRISMAGVTTGNV YLANAIHEVT+++
Sbjct: 373 TNQIGMFCYSGMTPEQVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 430
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459088|ref|XP_004147278.1| PREDICTED: aspartate aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/420 (70%), Positives = 351/420 (83%), Gaps = 3/420 (0%)
Query: 4 RYLTRAARRCSVHTTSSRTVG-WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRD 62
+ L + RC +R++ WW V PA KDPI GVTEAFLADPSP K+N+GVGAYRD
Sbjct: 10 KLLNQNNLRC--FGIGARSISSWWKSVEPAPKDPILGVTEAFLADPSPNKVNVGVGAYRD 67
Query: 63 DKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122
D G+PVVL CVREAE +IAG+ +E + S KMVEE++KL YG++SD++K+ + A +Q
Sbjct: 68 DNGKPVVLDCVREAERRIAGNLNMEYLPMGGSIKMVEETLKLAYGENSDLIKDKKIASIQ 127
Query: 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDF 182
+LSGTGACR+FA+FQ+RF PES IY P PTW+NHHNIWRDAQ+P+RTYHYY P+SK LDF
Sbjct: 128 SLSGTGACRIFADFQKRFLPESQIYIPVPTWANHHNIWRDAQVPQRTYHYYHPESKGLDF 187
Query: 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242
+ALMDDIKNAP+ SFFLLH AHNPTGVDPTEEQWREISYQFKVKGHF FFDMAYQGFAS
Sbjct: 188 SALMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQWREISYQFKVKGHFAFFDMAYQGFAS 247
Query: 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302
GD +KDA++IRIFLED H IG AQSYAK+MGLYG RVGCLS++C D KQA A++SQ+QQ+
Sbjct: 248 GDPEKDAKSIRIFLEDGHHIGIAQSYAKNMGLYGQRVGCLSVVCEDEKQAVAVKSQLQQL 307
Query: 303 ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362
AR MY +PP+HG L+V+ IL DP+LK LW+ EVK+MADRI RT LR+NLEKLGS L+W
Sbjct: 308 ARPMYSNPPIHGALVVSIILGDPDLKKLWLKEVKVMADRIIGMRTALRENLEKLGSPLSW 367
Query: 363 EHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRS 422
EHIT Q+GMFC+SGLTP QVDRL E+HIYMT++GRISMAGVTTGNV YLANAIHEVT+S
Sbjct: 368 EHITKQIGMFCYSGLTPEQVDRLTNEYHIYMTRNGRISMAGVTTGNVPYLANAIHEVTKS 427
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 435 | ||||||
| TAIR|locus:2052851 | 430 | ASP1 "aspartate aminotransfera | 0.940 | 0.951 | 0.678 | 2.4e-154 | |
| RGD|2722 | 430 | Got2 "glutamic-oxaloacetic tra | 0.926 | 0.937 | 0.513 | 5.7e-107 | |
| ZFIN|ZDB-GENE-030131-7917 | 428 | got2b "glutamic-oxaloacetic tr | 0.914 | 0.929 | 0.509 | 5.7e-107 | |
| MGI|MGI:95792 | 430 | Got2 "glutamate oxaloacetate t | 0.926 | 0.937 | 0.511 | 1.5e-106 | |
| UNIPROTKB|P00505 | 430 | GOT2 "Aspartate aminotransfera | 0.926 | 0.937 | 0.511 | 8.3e-106 | |
| UNIPROTKB|Q4R559 | 430 | GOT2 "Aspartate aminotransfera | 0.926 | 0.937 | 0.511 | 2.2e-105 | |
| UNIPROTKB|Q5REB0 | 430 | GOT2 "Aspartate aminotransfera | 0.926 | 0.937 | 0.508 | 1.2e-104 | |
| UNIPROTKB|P00506 | 430 | GOT2 "Aspartate aminotransfera | 0.926 | 0.937 | 0.503 | 1.6e-104 | |
| UNIPROTKB|P12344 | 430 | GOT2 "Aspartate aminotransfera | 0.926 | 0.937 | 0.503 | 2e-104 | |
| UNIPROTKB|P00508 | 423 | GOT2 "Aspartate aminotransfera | 0.954 | 0.981 | 0.488 | 3.2e-104 |
| TAIR|locus:2052851 ASP1 "aspartate aminotransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
Identities = 278/410 (67%), Positives = 327/410 (79%)
Query: 14 SVHTTSSRTVG-WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQC 72
S H R++ WW V PA KDPI GVTEAFLADPSP K+N+GVGAYRDD G+PVVL+C
Sbjct: 20 SGHFGGLRSMSSWWKSVEPAPKDPILGVTEAFLADPSPEKVNVGVGAYRDDNGKPVVLEC 79
Query: 73 VREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRL 132
VREAE ++AGS F+E + S KMV+ ++KL YG +S+ +K+ R A VQ LSGTGACRL
Sbjct: 80 VREAEKRLAGSTFMEYLPMGGSAKMVDLTLKLAYGDNSEFIKDKRIAAVQTLSGTGACRL 139
Query: 133 FAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA 192
FA+FQ+RF P S IY P PTWSNHHNIW+DAQ+P++TYHYY P++K LDF+ALMDD+KNA
Sbjct: 140 FADFQKRFSPGSQIYIPVPTWSNHHNIWKDAQVPQKTYHYYHPETKGLDFSALMDDVKNA 199
Query: 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252
P+ SFFLLH AHNPTGVDPTEEQWREIS FK K HF FFDMAYQGFASGD +DA++I
Sbjct: 200 PEGSFFLLHACAHNPTGVDPTEEQWREISQLFKAKKHFAFFDMAYQGFASGDPARDAKSI 259
Query: 253 RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPV 312
RIFLED H IG +QSYAK+MGLYG RVGCLS+LC D K MY +PP+
Sbjct: 260 RIFLEDGHHIGISQSYAKNMGLYGQRVGCLSVLCEDPKQAVAVKSQLQQLARPMYSNPPL 319
Query: 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMF 372
HG LV+TIL DP LKSLW+ EVK+MADRI RTTLR++LEKLGS L+WEH+T Q+GMF
Sbjct: 320 HGAQLVSTILEDPELKSLWLKEVKVMADRIIGMRTTLRESLEKLGSPLSWEHVTKQIGMF 379
Query: 373 CFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRS 422
C+SGLTP QVDRL E+HIYMT++GRISMAGVTTGNV YLANAIHEVT+S
Sbjct: 380 CYSGLTPEQVDRLTSEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVTKS 429
|
|
| RGD|2722 Got2 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 208/405 (51%), Positives = 269/405 (66%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IAG E + + S +L G++S+V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAGKNLDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P P+W NH I+RDA + + Y YYDP + DF+ ++DI P+ S
Sbjct: 146 QRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+E++ K K F FFDMAYQGFASGD DKDA A+R F+
Sbjct: 206 VLLLHACAHNPTGVDPRPEQWKEMAAVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D++ +Y +PP++G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ ATIL+ P+L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+G
Sbjct: 326 IAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
L P QV+RL KEF +YMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 386 LKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
|
| ZFIN|ZDB-GENE-030131-7917 got2b "glutamic-oxaloacetic transaminase 2b, mitochondrial (aspartate aminotransferase 2)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 207/406 (50%), Positives = 269/406 (66%)
Query: 21 RTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI 80
R WW V DPI GVTEAF D + K+NLGVGAYRDD G+P VL CVR+AE+ I
Sbjct: 26 RASSWWTEVQMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAESLI 85
Query: 81 AGS----EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF 136
A E+L + K E L G+DSDV+K RS VQ +SGTG+ R+ A F
Sbjct: 86 ASKALDKEYLGIVGLGDFNKACAE---LALGQDSDVLKSKRSITVQTISGTGSLRVGANF 142
Query: 137 QRRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195
RFH + +Y P P+W NH I+RDA + + Y YYDP + DF +DDI P +
Sbjct: 143 LSRFHTVARDVYLPKPSWGNHTPIFRDAGMQLKAYRYYDPATCGFDFTGALDDISKIPQN 202
Query: 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255
S LLH AHNPTGVDP EQW+E+S K + PFFDMAYQGFASGD+D+DA A+R F
Sbjct: 203 SVILLHACAHNPTGVDPRPEQWKELSAVIKERKLLPFFDMAYQGFASGDIDRDAWAVRYF 262
Query: 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGI 315
+E H I +QS+AK+MGLYG RVG +++C D++ +Y +PP++G
Sbjct: 263 IEQGHNILLSQSFAKNMGLYGERVGGFTVVCGDAEEAKRVESQLKILIRPIYSNPPMNGA 322
Query: 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS 375
+ +TIL+ P L+S W++EVK MADRI R R L NL+K GS+ NW+H+T+Q+GMFCF+
Sbjct: 323 RIASTILTTPELRSTWLEEVKGMADRIIRMREMLVTNLKKEGSTHNWQHVTDQIGMFCFT 382
Query: 376 GLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
GL P QV+RL K+F +YMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 383 GLKPEQVERLTKDFSVYMTKDGRISVAGVTSGNVEYLAHAIHQVTK 428
|
|
| MGI|MGI:95792 Got2 "glutamate oxaloacetate transaminase 2, mitochondrial" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 207/405 (51%), Positives = 269/405 (66%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IA E + + + S +L G++++V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P P+W NH I+RDA + + Y YYDP + DF+ ++DI P+ S
Sbjct: 146 QRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+EI+ K K F FFDMAYQGFASGD DKDA A+R F+
Sbjct: 206 VLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D++ +Y +PP++G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ ATIL+ P+L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+G
Sbjct: 326 IAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
L P QV+RL KEF +YMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 386 LKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
|
| UNIPROTKB|P00505 GOT2 "Aspartate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 207/405 (51%), Positives = 266/405 (65%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IA E + + + S +L G++S+V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P PTW NH I+RDA + + Y YYDP + DF ++DI P+ S
Sbjct: 146 QRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+EI+ K + F FFDMAYQGFASGD DKDA A+R F+
Sbjct: 206 VLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D+ MY +PP++G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ A IL+ P+L+ W+ EVK+MADRI RT L NL+K GS+ NW+HIT+Q+GMFCF+G
Sbjct: 326 IAAAILNTPDLRKQWLQEVKVMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
L P QV+RL KEF IYMT+DGRIS+AGVT+ NV YLA+AIH+VT+
Sbjct: 386 LKPEQVERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVTK 430
|
|
| UNIPROTKB|Q4R559 GOT2 "Aspartate aminotransferase, mitochondrial" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 207/405 (51%), Positives = 266/405 (65%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IA E + + + S +L G++S+V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P P+W NH I+RDA + + Y YYDP + DF ++DI P+ S
Sbjct: 146 QRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+EI+ K + F FFDMAYQGFASGD DKDA A+R F+
Sbjct: 206 VLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D+ MY +PP++G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ A IL+ P+L+ W+ EVK MADRI RT L NL+K GS+ NW+HIT+Q+GMFCF+G
Sbjct: 326 IAAAILNTPDLRKQWLQEVKGMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
L P QV+RL KEF IYMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 386 LKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
|
| UNIPROTKB|Q5REB0 GOT2 "Aspartate aminotransferase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
Identities = 206/405 (50%), Positives = 265/405 (65%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IA E + + + S +L G++S+V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P P+W NH I+RDA + + Y YYDP + DF ++DI P+ S
Sbjct: 146 QRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+EI+ K + F FFDMAYQGFASGD DKDA A+R F+
Sbjct: 206 VLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D+ MY +PP++G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ A IL+ P+L+ W+ EVK MADRI RT L NL+K GS+ NW+HIT+Q+GMFCF+G
Sbjct: 326 IAAAILNTPDLRKQWLQEVKGMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
L P QV+RL KEF IYMT+DGRIS+AGVT+ NV YLA+AIH+VT+
Sbjct: 386 LKPEQVERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVTK 430
|
|
| UNIPROTKB|P00506 GOT2 "Aspartate aminotransferase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 204/405 (50%), Positives = 265/405 (65%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IA E + + + S +L G++++V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P P+W NH I+RDA + +Y YYDP + DF ++DI P S
Sbjct: 146 QRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+E++ K F FFDMAYQGFASGD +KDA A+R F+
Sbjct: 206 VILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D++ MY +PPV+G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ +TIL+ P+L+ W+ EVK MADRI RT L NL+K GSS NW+HI +Q+GMFCF+G
Sbjct: 326 IASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIVDQIGMFCFTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+ P QV+RL KEF IYMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 386 IKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGYLAHAIHQVTK 430
|
|
| UNIPROTKB|P12344 GOT2 "Aspartate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 204/405 (50%), Positives = 267/405 (65%)
Query: 19 SSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEA 78
S+R WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL VR+AEA
Sbjct: 26 SARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEA 85
Query: 79 KIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ 137
+IA E + + + + S +L G++++V+K GR VQ +SGTGA R+ A F
Sbjct: 86 QIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFL 145
Query: 138 RRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+RF S ++ P PTW NH I+RDA + ++Y YYDP + DF ++DI P S
Sbjct: 146 QRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQS 205
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH AHNPTGVDP EQW+E++ K F FFDMAYQGFASGD +KDA A+R F+
Sbjct: 206 VILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFI 265
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXXXXXXMYGSPPVHGIL 316
E + QSYAK+MGLYG RVG +++C D++ MY +PP++G
Sbjct: 266 EQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPINGAR 325
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+ +TIL+ P+L+ W+ EVK MADRI RT L NL+K GSS NW+HI +Q+GMFC++G
Sbjct: 326 IASTILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIIDQIGMFCYTG 385
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
L P QV+RL KEF IYMT+DGRIS+AGVT+GNV YLA+AIH+VT+
Sbjct: 386 LKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAIHQVTK 430
|
|
| UNIPROTKB|P00508 GOT2 "Aspartate aminotransferase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 205/420 (48%), Positives = 270/420 (64%)
Query: 4 RYLTRAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDD 63
R L A RR + ++R WW HV DPI GVTEAF D + K+NLGVGAYRDD
Sbjct: 7 RLLLSAPRRAAA---TARASSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDD 63
Query: 64 KGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122
G+ VL CVR+AEA IA + E + + S +L G++S+ K GR VQ
Sbjct: 64 NGKSYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQ 123
Query: 123 ALSGTGACRLFAEFQRRFHPESH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181
+SGTG+ R+ A F +RF S +Y P P+W NH I+RDA + + Y YYDP + SLD
Sbjct: 124 GISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 183
Query: 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241
F M+DI P+ S LLH AHNPTGVDP +EQW+E++ K + +FDMAYQGFA
Sbjct: 184 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFA 243
Query: 242 SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKXXXXXXXXXXX 301
SGD+++DA A+R F+E + +QSYAK+MGLYG R G +++C D++
Sbjct: 244 SGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKI 303
Query: 302 XXXXMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN 361
MY +PP++G + + IL+ P L+ W+ EVK MADRI RT L NL+K GSS N
Sbjct: 304 LIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHN 363
Query: 362 WEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
W+HIT+Q+GMFCF+GL P QV+RL KEF IYMT+DGRIS+AGV + NV YLA+AIH+VT+
Sbjct: 364 WQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 423
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P46643 | AAT1_ARATH | 2, ., 6, ., 1, ., 1 | 0.7135 | 0.9149 | 0.9255 | yes | no |
| Q02636 | ATTY_RHIME | 2, ., 6, ., 1, ., 5 | 0.3434 | 0.8643 | 0.9665 | yes | no |
| P05202 | AATM_MOUSE | 2, ., 6, ., 1, ., 1 | 0.5238 | 0.9126 | 0.9232 | yes | no |
| P95468 | TYRB_PARDE | 2, ., 6, ., 1, ., 5, 7 | 0.3358 | 0.8919 | 0.9847 | yes | no |
| O94320 | AATM_SCHPO | 2, ., 6, ., 1, ., 1 | 0.4570 | 0.9241 | 0.9199 | yes | no |
| Q4R559 | AATM_MACFA | 2, ., 6, ., 1, ., 1 | 0.5238 | 0.9126 | 0.9232 | N/A | no |
| P44425 | AAT_HAEIN | 2, ., 6, ., 1, ., 1 | 0.3873 | 0.9034 | 0.9924 | yes | no |
| P72173 | AAT_PSEAE | 2, ., 6, ., 1, ., 1 | 0.3840 | 0.8896 | 0.9723 | yes | no |
| Q28F67 | AATM_XENTR | 2, ., 6, ., 1, ., 1 | 0.4855 | 0.9425 | 0.9601 | yes | no |
| Q5REB0 | AATM_PONAB | 2, ., 6, ., 1, ., 1 | 0.5213 | 0.9126 | 0.9232 | yes | no |
| P12344 | AATM_BOVIN | 2, ., 6, ., 1, ., 1 | 0.5151 | 0.9057 | 0.9162 | yes | no |
| P58661 | AAT_SALTY | 2, ., 6, ., 1, ., 1 | 0.3746 | 0.9034 | 0.9924 | yes | no |
| P00508 | AATM_CHICK | 2, ., 6, ., 1, ., 1 | 0.5087 | 0.9126 | 0.9385 | yes | no |
| P00507 | AATM_RAT | 2, ., 6, ., 1, ., 1 | 0.5263 | 0.9126 | 0.9232 | yes | no |
| P00506 | AATM_PIG | 2, ., 6, ., 1, ., 1 | 0.5151 | 0.9057 | 0.9162 | yes | no |
| P00505 | AATM_HUMAN | 2, ., 6, ., 1, ., 1 | 0.5238 | 0.9126 | 0.9232 | yes | no |
| Q55F21 | AATM_DICDI | 2, ., 6, ., 1, ., 1 | 0.5037 | 0.9241 | 0.9436 | yes | no |
| P08907 | AATM_HORSE | 2, ., 6, ., 1, ., 1 | 0.5087 | 0.9126 | 0.9900 | yes | no |
| P23542 | AATC_YEAST | 2, ., 6, ., 1, ., 1 | 0.4084 | 0.9080 | 0.9449 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 435 | |||
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 0.0 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 0.0 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 1e-164 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 1e-163 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-90 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 5e-31 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-08 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 3e-04 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 4e-04 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 755 bits (1952), Expect = 0.0
Identities = 239/418 (57%), Positives = 293/418 (70%), Gaps = 1/418 (0%)
Query: 8 RAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRP 67
+A R ++ ++HV PA DPI GVTEAFLADPSP K+NLGVGAYR ++G+P
Sbjct: 6 KAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKP 65
Query: 68 VVLQCVREAEAKI-AGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126
VVL VR+AE ++ AGS E + + + S KL YG DS +KE R A VQ LSG
Sbjct: 66 VVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSG 125
Query: 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALM 186
TG+ RL AEF RF+P S IY P+PTW NHHNI+RDA +P RTY YYDP ++ LDF L+
Sbjct: 126 TGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLL 185
Query: 187 DDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246
+D+K APD SF LLH AHNPTGVDPT EQW +IS K K H PFFD AYQGFASGDLD
Sbjct: 186 EDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLD 245
Query: 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM 306
DAQ++R+F+ED H I AQSYAK+MGLYG RVG LS++C + A ++SQ++ IAR M
Sbjct: 246 ADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPM 305
Query: 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366
Y +PP+HG +VATIL DP L S W E+K MADRI R L LE GS +W HIT
Sbjct: 306 YSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHIT 365
Query: 367 NQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSEQ 424
Q+GMF F+GL QVDR+ KE+HIYMT+DGRISMAG+++ NV YLA+AIH V +
Sbjct: 366 KQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVVTNAS 423
|
Length = 423 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 553 bits (1428), Expect = 0.0
Identities = 208/404 (51%), Positives = 276/404 (68%), Gaps = 8/404 (1%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS- 83
+ V DPI G+ AF ADPSP K+NLG+GAYRD+ G+P VL+ VR+AE IA
Sbjct: 4 LFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKN 63
Query: 84 ---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF 140
E+L I S +E + KL++G+ S + E R A VQALSGTGA RL EF +RF
Sbjct: 64 LDKEYL-PIEGLQS--FIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRF 120
Query: 141 HPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL 199
P + +Y +PTW NH NI++ A + + Y YYDP +K LDF +++D++ AP+ S L
Sbjct: 121 LPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVL 180
Query: 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259
LH AHNPTGVDPTEEQW+EI+ K K PFFDMAYQGFASGDLDKDA AIR+F E
Sbjct: 181 LHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERG 240
Query: 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVA 319
AQS++K+MGLYG R+G L I+C + ++AA + SQ++ I R MY SPP+HG +
Sbjct: 241 VEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIAD 300
Query: 320 TILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTP 379
ILSDP L++ W+ E+K M+ RIQ R L L+ LGS +WEHI NQ+GMF F+GLT
Sbjct: 301 RILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTK 360
Query: 380 YQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSE 423
QV+RL +++HIY+ +GRIS+AG+T+ NV+Y+A AIH+V R+
Sbjct: 361 EQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVRNV 404
|
Length = 404 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 468 bits (1207), Expect = e-164
Identities = 176/394 (44%), Positives = 255/394 (64%), Gaps = 2/394 (0%)
Query: 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF- 85
+ + A DPI G+ EAF ADP P K+NLG+G Y+D+ G+ VL+ V++AE ++ E
Sbjct: 3 EKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKT 62
Query: 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESH 145
+ + +E KL++G DS + E R A VQ L GTGA R+ A+F RF P++
Sbjct: 63 KNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDAT 122
Query: 146 IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205
++ DPTW NH I+ A + TY YYD ++K LDF ++ D+K AP+ S LLH H
Sbjct: 123 VWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCH 182
Query: 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265
NPTG+DPTEEQW+E++ K +G PFFD+AYQGFA G L++DA A+R+F E + A
Sbjct: 183 NPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVA 241
Query: 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325
S++K+ GLYG RVG LS++ D+++A + SQ++ I R Y +PP HG +VATIL++P
Sbjct: 242 SSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNP 301
Query: 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRL 385
L++ W E++ M RI R L L+ LG+ N++ I +Q GMF ++GL+P QVDRL
Sbjct: 302 ELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRL 361
Query: 386 AKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
+EF IY+ GRI++AG+ T N++Y+A AI V
Sbjct: 362 REEFGIYLVASGRINVAGLNTSNIDYVAKAIAAV 395
|
Length = 396 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 463 bits (1195), Expect = e-163
Identities = 172/405 (42%), Positives = 247/405 (60%), Gaps = 24/405 (5%)
Query: 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL 86
+H+ A DPI G+ EAF ADP P K+NLGVG Y+D++GR VL+ V++AEA++ +E
Sbjct: 3 EHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE-- 60
Query: 87 ESISASVSTK----------MVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF 136
+TK + +L++G DS + GR A VQ GTGA R+ A+F
Sbjct: 61 -------TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADF 113
Query: 137 QRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
+R P++ ++ DPTW NH I+ A + +TY YYD +K LDF A++ D+ AP
Sbjct: 114 LKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGD 173
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
LLH HNPTG D T EQW E++ K +G PF D+AYQGF G L++DA +R F
Sbjct: 174 VVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFA 232
Query: 257 E--DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHG 314
E L+ A S++K+ GLYG RVG LS++ D+++A + SQ++ R Y +PP HG
Sbjct: 233 AAGLELLV--ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHG 290
Query: 315 ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCF 374
+VATIL+DP L++ W E++ M +RI+ R L + L+ G S +++ I Q GMF +
Sbjct: 291 AAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSY 350
Query: 375 SGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
SGLTP QVDRL +EF +Y GRI++AG+ N++Y+A AI V
Sbjct: 351 SGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAAV 395
|
Length = 396 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 1e-90
Identities = 118/378 (31%), Positives = 161/378 (42%), Gaps = 36/378 (9%)
Query: 52 KINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEESVKLVYGKDS 110
KINLG Y D G L V +AE AG ++ E K + S
Sbjct: 3 KINLGSNEYLGDSG---TLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFL--GRS 57
Query: 111 DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170
V+K R A V SG GA F R +P I P PT+ ++ I+R A Y
Sbjct: 58 PVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRY 117
Query: 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHF 230
Y + LDF AL +K A + + +LH S HNPTG T E+ ++ K
Sbjct: 118 PLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNIL 177
Query: 231 PFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSK 290
D AY GF G DA A R L + + S++K+ GL G RVG +
Sbjct: 178 LLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNA---- 231
Query: 291 QAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350
A+ SQ++++AR Y S H A LSDP L + ++E M RI+ +R LR
Sbjct: 232 ---AVISQLRKLARPFYSS--THLQAAAAAALSDPLLVASELEE---MRQRIKERRDYLR 283
Query: 351 QNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAK----EFHIYMTQ--------DGR 398
LE G + +Q G F +GL P LA+ E +Y+T R
Sbjct: 284 DGLEAAG----LSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSFGGPGWLR 339
Query: 399 ISMAGVTTGNVNYLANAI 416
I++AG T + L AI
Sbjct: 340 ITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 5e-31
Identities = 70/392 (17%), Positives = 126/392 (32%), Gaps = 68/392 (17%)
Query: 53 INLGVGAYRDDKGRPVVLQCVREAEAKIAGS--------EFLESISASVSTKMVEESVKL 104
I+L +G V+ A E E+I+ +
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIA------------EW 48
Query: 105 VYGKDSDVVKEGR---SAGV-QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW 160
+ + V + G +ALS R P + PDPT+ +
Sbjct: 49 LGRRGGVDVPPEEIVVTNGAQEALSL--LLRALLN------PGDEVLVPDPTYPGYEAAA 100
Query: 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREI 220
R A + LD L + P + L+ +NPTG +EE+ E+
Sbjct: 101 RLAGAEVVPVPLDEEGGFLLDLELL--EAAKTPKTKLLYLNN-PNNPTGAVLSEEELEEL 157
Query: 221 SYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280
+ K G D AY + A+ + E +I +S++K+ GL G R+G
Sbjct: 158 AELAKKHGILIISDEAYAELVYD--GEPPPALALLDAYERVI-VLRSFSKTFGLPGLRIG 214
Query: 281 CLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340
L + +++++ P A L D + ++ + +
Sbjct: 215 YLIA------PPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG------EEHLEELRE 262
Query: 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCF----SGLTPYQVDRLAKEFHIYMTQD 396
R +R+R L + L++LG + G F + G ++RL E + +
Sbjct: 263 RYRRRRDALLEALKELG---PLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPG 319
Query: 397 G----------RISMAGVTTGNVNYLANAIHE 418
R+S A + + E
Sbjct: 320 SAFGEGGEGFVRLSFATPEE-ELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 13/163 (7%)
Query: 111 DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170
+++ G V SGTGA A P + + + + + +
Sbjct: 11 RLLQPGNDKAVFVPSGTGA--NEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVP 68
Query: 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHF 230
D A+++++K P+ + ++ P+ + + P +E R+I+ ++ +
Sbjct: 69 VPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKE-IRKIAKEYGI---L 124
Query: 231 PFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273
D A G AS A + + + S K++G
Sbjct: 125 LLVDAASAGGASP-------APGVLIPEGGADVVTFSLHKNLG 160
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 49/262 (18%)
Query: 149 PDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS---SFFLLHPSAH 205
PDP + ++ ++ D + F ++D++ A + L P +
Sbjct: 119 PDPGYPSYEAA---VKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSP--N 173
Query: 206 NPTGVDPTEEQWREISYQFKVKGHFP-FFDMAYQGFASGDL---------DKDAQAIRIF 255
NPTG ++E+ + I + + D Y+ + I I
Sbjct: 174 NPTGAVYSKEELKAI-VELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITIN 232
Query: 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGI 315
S++K+ G+ G R+G + + + + ++++ + P
Sbjct: 233 -----------SFSKTYGMTGWRIGW---VVGPPE---ELIAALRKLKSYLTSCAPTPAQ 275
Query: 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLG-MFCF 374
L+ P + V+ M + + +R L +E L + G + F
Sbjct: 276 YAAIAALNGPQSD----EVVEEMREEYRERRDLL---VEALNEIGGLSVVKPPEGAFYLF 328
Query: 375 SGLTPYQ-----VDRLAKEFHI 391
+ +L +E +
Sbjct: 329 PKIPELLDSEEFAKKLLEEAGV 350
|
Length = 393 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 46/254 (18%)
Query: 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDD 188
RL + P + DPT+ D +D AL +
Sbjct: 171 LLRLLLD------PGDTVLVEDPTYPGALQALEALGARVIPVPV---DEDGIDPEALEEA 221
Query: 189 IKNAPDSSFFLLHPSAHNPTGVDPTEEQWREI-----SYQFKVKGHFPFFDMAYQGFASG 243
+ + P+ NPTGV + E+ + + Y + D Y G
Sbjct: 222 LAQWK-PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLI-----IEDDYY-----G 270
Query: 244 DLDKDAQ---AIRIFLEDEHLIGCAQSYAKSM--GLYGHRVGCLSILCVDSKQAAAIRSQ 298
+L D ++ +I S++K++ GL R+G + + +
Sbjct: 271 ELRYDGPPPPPLKALDAPGRVIYLG-SFSKTLAPGL---RLGY---VVAPPELIE----K 319
Query: 299 IQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358
+ ++ +A P +A L + ++ + R+R L + L +
Sbjct: 320 LLRLKQAADLGPSSLSQAALAAFLLSG----HYDRHLRRLRREYARRRDALLEALAEYLP 375
Query: 359 SLNWEHITNQLGMF 372
L G+F
Sbjct: 376 ELATWTRPEG-GLF 388
|
Length = 459 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 435 | |||
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 100.0 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.96 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.96 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.96 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.95 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.95 | |
| PLN02721 | 353 | threonine aldolase | 99.95 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.95 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.95 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.95 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.95 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.94 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.94 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.93 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.93 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.93 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.93 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.92 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.92 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.92 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.92 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.92 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.92 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.92 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.92 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.92 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.92 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.91 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.91 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.91 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.91 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.91 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.91 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.91 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.91 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.91 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.9 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.9 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.89 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.89 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.89 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.89 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.89 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.89 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.88 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.88 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.88 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.88 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.88 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.87 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.87 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.87 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.87 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.87 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.87 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.86 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.86 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.86 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.86 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.86 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.86 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.86 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.86 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.86 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.85 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.85 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.85 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.85 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.85 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.85 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.85 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.85 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.84 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.84 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.84 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.84 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.84 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.84 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.83 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.83 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.83 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.83 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.82 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.82 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.82 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.82 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.82 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.82 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.81 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.81 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.8 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| PLN02651 | 364 | cysteine desulfurase | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.79 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.78 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.78 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.77 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.77 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.77 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.76 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.76 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.76 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.76 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.76 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.74 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.74 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.74 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.73 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.73 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.73 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.71 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.71 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.71 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.7 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.7 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.7 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.69 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.68 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.68 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.67 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.66 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.66 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.66 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.65 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.65 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.64 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.64 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.64 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.64 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.63 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.63 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.63 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.63 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.63 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.62 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.62 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.62 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.62 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.6 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.6 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.59 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.59 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.59 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.58 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.58 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.58 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.58 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.58 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.57 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.56 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.55 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.55 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.55 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.55 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.54 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.54 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.54 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.54 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.53 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.53 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.53 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.53 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.53 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.53 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.52 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.51 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.5 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.5 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.5 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.5 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.5 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.5 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.48 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.48 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.48 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.47 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.47 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.46 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.46 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.45 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.45 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.44 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.43 | |
| PLN02263 | 470 | serine decarboxylase | 99.42 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.42 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.42 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.42 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.37 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.36 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.36 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.35 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.35 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.32 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.3 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.3 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.29 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.29 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.27 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.23 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.2 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.16 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.14 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.11 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.04 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.99 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.98 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.96 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.94 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 98.93 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.91 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.84 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.84 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.78 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.77 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.76 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.7 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.66 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.65 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.64 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.5 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.34 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.23 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.19 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.08 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.98 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.97 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.65 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.49 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.25 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.18 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.6 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.38 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 94.5 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 92.8 |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=425.68 Aligned_cols=394 Identities=44% Similarity=0.808 Sum_probs=374.4
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+|++++..++++++.+.+.+++++.+++|||++|.|.|+.|..++.+.|+++.+.+. ......|.|..|.+++++++++
T Consensus 1 ~F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ 80 (396)
T COG1448 1 MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQK 80 (396)
T ss_pred CccccccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999987 3457789999999999999999
Q ss_pred hHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChH
Q 013839 104 LVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 183 (435)
.+++.++..++++++..+.|.|||+|+.+.+.|+..+.|..+|++++|+|++|..+++..|.++..||.+|.++.++|++
T Consensus 81 llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~ 160 (396)
T COG1448 81 LLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFD 160 (396)
T ss_pred HhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHH
Confidence 99999888888999999999999999999999999988989999999999999999999999999999998888899999
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
.+.+.+.+.+.+..+++-.+||||||..++.++|++|+++.++.+++.+.|-+|++|..+ ++.|...++.+......++
T Consensus 161 ~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~l 239 (396)
T COG1448 161 GMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELL 239 (396)
T ss_pred HHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEE
Confidence 999999988777778888899999999999999999999999999999999999999988 8889999999988877899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
++.||||.||+.|.|+|.+++++.+.+...++.+++....+..+++||..+...++..|++++|+..|++++..+++|+.
T Consensus 240 va~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~ 319 (396)
T COG1448 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRIL 319 (396)
T ss_pred EEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889889889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
+.|..|.+.|+..+.+..|+++..|.|||.+.|++.+++.+|.+++||+++.+||||++++++.+++++.++|.++
T Consensus 320 ~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v~sGRi~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 320 EMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred HHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEEecCCeeeeccCChhhHHHHHHHHHhh
Confidence 9999999999998887889999999999999999999999999999999999999999999999999999999875
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-57 Score=443.82 Aligned_cols=400 Identities=59% Similarity=0.968 Sum_probs=328.4
Q ss_pred ccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHH
Q 013839 22 TVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEE 100 (435)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~ 100 (435)
..++|+++...+.+.+....+.++.+..+..++|+.|.++++++++...+.++++...+ ..+...+|+++.|.++||++
T Consensus 20 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~a 99 (423)
T PLN02397 20 ASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKL 99 (423)
T ss_pred hhhHHHcCCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHH
Confidence 45679999999999998888888777778899999997547666566667777776665 34445579999999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
+++++.+.+.....+++|....+.+|+++..++..++.++.|||+|++++|+|+.|...++..|++++.+++.+++++++
T Consensus 100 ia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~ 179 (423)
T PLN02397 100 SAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGL 179 (423)
T ss_pred HHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCcc
Confidence 99999766544344455643457788888766655777778999999999999999999999999999999844456899
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
|++.+++.+.+..++++++++++||||||.+++.+++++|+++|++|+++||+||+|.+|.+++...+..++..+....+
T Consensus 180 d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 259 (423)
T PLN02397 180 DFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGH 259 (423)
T ss_pred CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCC
Confidence 99999988865435689999999999999999999999999999999999999999999998532112344444544456
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++|+++||||+|+++|||+||+++++++++....+.+.+.+..+..+.+++.+.|.+++.+|.++.+.+.|.++++++++
T Consensus 260 ~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~ 339 (423)
T PLN02397 260 EILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMAD 339 (423)
T ss_pred cEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999996334466644556666666666666778899999999999987766677777899999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHH
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l 420 (435)
+++++++.+.+.|++++.+..|.+..|+||||+|++++.+++.+|++++||.+.++|||++++.+.+++++++++|++++
T Consensus 340 ~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~~~~~~Ll~~~~V~v~~~~Ri~~~~~~~~~i~~~~~~i~~~~ 419 (423)
T PLN02397 340 RIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVV 419 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEeeCCHHHHHHHHHHHHHHH
Confidence 99999999999999987544567788999999999999889999999999999999999998679999999999999997
Q ss_pred H
Q 013839 421 R 421 (435)
Q Consensus 421 ~ 421 (435)
+
T Consensus 420 ~ 420 (423)
T PLN02397 420 T 420 (423)
T ss_pred h
Confidence 5
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=442.51 Aligned_cols=398 Identities=51% Similarity=0.865 Sum_probs=324.7
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia 102 (435)
++++++...+++.++...+..+++.++++|||+.|.|.+++++..+.+.++++...+. .+...+|+++.|.++||++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia 82 (404)
T PTZ00376 3 SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQ 82 (404)
T ss_pred hhhhcCCcCCCChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHH
Confidence 3477777777777777777776555678999999997556555566667777665554 243578999999999999999
Q ss_pred HhHcCCCCccccCCCeeeEecCCchhHHHHHHHH-HHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 103 KLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF-QRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 103 ~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~-~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
+++.+.+...+++++|....|.|+++|+.++..+ .++++|||+|++++|+|+.|...++..|++++.+++.+++++++|
T Consensus 83 ~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d 162 (404)
T PTZ00376 83 KLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLD 162 (404)
T ss_pred HHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcC
Confidence 9997665444568888754599999999888533 356789999999999999999999999999999998544568999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++.+++.+.+..++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++...+..++..+.+..++
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
T PTZ00376 163 FDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242 (404)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCc
Confidence 99999998654345788999999999999999999999999999999999999999999986321123344444444568
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+|+++||||.|+++|+|+||++++..+++..+.+++.+.+..+..+.+++.++|.++..+|.++.+.+.|.+++++.+++
T Consensus 243 vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred EEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999953234777555566666665555666778899999999999876666666778888999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++++++.+.+.|++++.+..+.+..+++|||+|+.++.++++.|++++||.+.||||++++..+.++++.++++|++++.
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~~~~~~L~~~~~v~v~p~~Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCHHHHHHHHHhCCEeecCCCeEEEeccCHHhHHHHHHHHHHHHh
Confidence 99999999999998865434667788999999999999999999988899999999999986689999999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-56 Score=432.97 Aligned_cols=394 Identities=42% Similarity=0.745 Sum_probs=318.9
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHh
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
|+++...+++.+......++.+..+++|+|+.|.|++++..+++.+.+.++..++. .+...+|++..|.++||++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~ 81 (396)
T PRK09257 2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQEL 81 (396)
T ss_pred cccCCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHH
Confidence 56777777777777767666545578999999987443322322456666666654 33455799999999999999999
Q ss_pred HcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHh
Q 013839 105 VYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 105 l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 184 (435)
+.+.+...+.++++..++|+|+++|+.++..++..++|||+|++++|+|+.|..+++..|++++.+|+.+++++++|++.
T Consensus 82 ~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~ 161 (396)
T PRK09257 82 LFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDA 161 (396)
T ss_pred hcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHH
Confidence 97665544567887223899999999998544555689999999999999999999999999999997445568999999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
+++.+.+.+++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++. +.+..++..+.+..+++|+
T Consensus 162 l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~vi~ 240 (396)
T PRK09257 162 MLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGL-EEDAYGLRAFAAAGLELLV 240 (396)
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccch-HHHHHHHHHHHhcCCcEEE
Confidence 999887544456888889999999999999999999999999999999999999998641 1234455555555578999
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
++||||.|+++|+|+||+++++++++...+++..+....+..+.+++.+.|.+++.++.++.+.+.|.+++++.++++++
T Consensus 241 i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~ 320 (396)
T PRK09257 241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKA 320 (396)
T ss_pred EEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974343555444566666666566677789999999999999887666678899999999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHH
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l 420 (435)
+++.+.+.|++++.+..+.+..+++|+|+|+.++.+++.++++++||.+.|.|||+|++.+++++++++++|++++
T Consensus 321 rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~l~~~~~V~~~p~~ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 321 MRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred HHHHHHHHHHhcCCCCCcccccccceEEEecCCCHHHHHHHHHcCCEEEcCCCeEEEeeCCHHHHHHHHHHHHhhC
Confidence 9999999999886432467778999999999999888888889999999999999998779999999999998753
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-57 Score=433.85 Aligned_cols=345 Identities=15% Similarity=0.183 Sum_probs=298.0
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCC-eeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGR-SAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-v~~~~t~gg~~ 128 (435)
.++|+|++|+| ++ +.|.+..+.+..++..+.. .|.+..|.++||++|++++...++..+.+++ |. +|+|+++
T Consensus 28 ~~vi~l~iG~P-d~---~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eii--vt~Ga~~ 100 (393)
T COG0436 28 EDVIDLSIGEP-DF---PTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEII--VTAGAKE 100 (393)
T ss_pred CCEEEeCCCCC-CC---CCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEE--EeCCHHH
Confidence 58999999997 55 6777777777777765533 6889999999999999999655544444555 88 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ ++++++|||+|++++|.|+.|...+..+|++++.+++..+ ++|.+|+++|+++++ ++++++++++||||
T Consensus 101 al~~~--~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln~P~NP 175 (393)
T COG0436 101 ALFLA--FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILNSPNNP 175 (393)
T ss_pred HHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEeCCCCC
Confidence 99998 8889999999999999999999999999999999997433 489999999999998 68999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++++++++|+++|++|+++||.||+|.++.|++. .+.++..+.+..+++|.+.||||.++++|||+||+++ +
T Consensus 176 TGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~--~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~--~ 251 (393)
T COG0436 176 TGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA--EHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVG--P 251 (393)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC--CcCCHhhcCCCcceEEEEecccccccccccceeEeec--C
Confidence 99999999999999999999999999999999999862 3455655555568999999999999999999999974 2
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT- 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~- 366 (435)
+++ +++.+.+++.....+++.+.|.++..+|..++. ....+..++.|+++|+.+.+.|.+++. +.+..
T Consensus 252 ~~~----l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~----~~~~~~~~~~~~~rrd~l~~~l~~~~g---~~~~~~ 320 (393)
T COG0436 252 PEE----LIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS----DEVVEEMREEYRERRDLLVEALNEIGG---LSVVKP 320 (393)
T ss_pred hHH----HHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHHHHHHHHHHhcCC---eeeccC
Confidence 377 888888888888999999999999999997631 146677779999999999999998863 67777
Q ss_pred cCcceeEecCCC-----HHHHHHHhhhccEEEeCC-------C----cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGLT-----PYQVDRLAKEFHIYMTQD-------G----RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~~-----~~~~~~ll~~~gI~i~pg-------g----Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
|+|+||+|++++ .+++.+||+++||.+.|| | |+|++. +.+++++++++|.++++.
T Consensus 321 p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 321 PEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAE 391 (393)
T ss_pred CCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHHHHh
Confidence 889999999662 568899999999999997 2 999987 669999999999998865
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=376.21 Aligned_cols=401 Identities=58% Similarity=0.967 Sum_probs=380.1
Q ss_pred cccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCCCCcccHHHHH
Q 013839 21 RTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESISASVSTKMVE 99 (435)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~ 99 (435)
+..|||++|+..|+|+++.+.++++.++++.+|||++|.|.|+++.|.+.+.++++..++.. ....+|.|..|++++.+
T Consensus 23 ~~~s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k 102 (427)
T KOG1411|consen 23 RASSWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNK 102 (427)
T ss_pred cccchhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHH
Confidence 45589999999999999999999999999999999999999999999999999999998873 45678999999999999
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKS 179 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (435)
..+++.+|.++..++++++..+.+.+||+|+...+.|++.+-++..|.+|+|+|.++..++..+|..+..|...++.+.+
T Consensus 103 ~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~g 182 (427)
T KOG1411|consen 103 LSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRG 182 (427)
T ss_pred HHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred cChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 180 LDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 180 ~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+|.+.+.+.+.+.++...+++--..|||||+..+.++|++|.++.++.+.+.+.|.+|++|..++.+.|..+++.|.+.+
T Consensus 183 ld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g 262 (427)
T KOG1411|consen 183 LDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDG 262 (427)
T ss_pred cchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcC
Confidence 99999999999887777777777889999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
.+++++.|++|.+|+.|.|+|.+.++|.+.+...++.++++.+.+.+++++|..+...++..|.++++..+|...++.+.
T Consensus 263 ~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~Ma 342 (427)
T KOG1411|consen 263 HEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMA 342 (427)
T ss_pred CceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999889999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
+|+...|+.|.+.|+..+.+..|.++..|-|+|.|.|+++++++.|.++++|+++..||||+++++..++.++.++|.++
T Consensus 343 dRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT~dGRiS~aG~ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 343 DRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLTKDGRISMAGLSSSNVPYLADAIHAV 422 (427)
T ss_pred HhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCHHHHHHHHhhheeeeccCceEeeccccccCCcccchhhHhH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999998876
Q ss_pred HH
Q 013839 420 TR 421 (435)
Q Consensus 420 l~ 421 (435)
.+
T Consensus 423 tk 424 (427)
T KOG1411|consen 423 TK 424 (427)
T ss_pred hc
Confidence 54
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-52 Score=362.63 Aligned_cols=402 Identities=41% Similarity=0.741 Sum_probs=374.9
Q ss_pred ccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHH
Q 013839 22 TVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVE 99 (435)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~ 99 (435)
++++|+.++..++..++.+.+.++++.++.+++|++|.|.++++.|++.++++++...+. ....+.|.|..|++.++.
T Consensus 2 ~~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~ 81 (410)
T KOG1412|consen 2 SMSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTK 81 (410)
T ss_pred CcchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhh
Confidence 568899999999999999999999999999999999999999999999999999888886 346788999999999999
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC-CeeeeeecCCCCC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI-PERTYHYYDPDSK 178 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~ 178 (435)
+.++.+.+.+...++++++..+.+.+||+|+.+.+.|++.+-+..+|.+..|+|.++..+++..|. ++..|+.++.++.
T Consensus 82 ~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k 161 (410)
T KOG1412|consen 82 AATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENK 161 (410)
T ss_pred hhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCc
Confidence 999999999999999999999999999999999999988877888999999999999999999995 5677888888889
Q ss_pred CcChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 179 SLDFAALMDDIKNAPDSSFFLLHPS-AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++|++.+...++.+|... ++++.. .|||||+..+.++|..|++..++.+++.+.|-+|++|..++++.|.|.++.+.+
T Consensus 162 ~~d~e~~Lsdl~~APe~s-i~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~ 240 (410)
T KOG1412|consen 162 CVDLEGFLSDLESAPEGS-IIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE 240 (410)
T ss_pred eecHHHHHHHHhhCCCCc-EEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh
Confidence 999999999999886554 444554 499999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
.+...+++.||+|.||+.+.|+|-+.++..++.....+.+++....+..+++||..+.+++...|..++++++|...++.
T Consensus 241 ~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~ 320 (410)
T KOG1412|consen 241 QGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKT 320 (410)
T ss_pred cCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 88889999999999999999999998888788877778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHH
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~ 417 (435)
+..|+++.|..|++.|..++.|+.|+.+..|.|||.+.|+++.+++.|.++++|++.+.|||++++++..++++..++|.
T Consensus 321 MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRInisGLN~~NveyVAkAId 400 (410)
T KOG1412|consen 321 MSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRINISGLNMKNVEYVAKAID 400 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcEeeeccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 013839 418 EVTRSEQ 424 (435)
Q Consensus 418 ~~l~~~~ 424 (435)
+.++...
T Consensus 401 e~Vr~~~ 407 (410)
T KOG1412|consen 401 ETVRAIK 407 (410)
T ss_pred HHHHhhc
Confidence 9987655
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=376.50 Aligned_cols=365 Identities=13% Similarity=0.068 Sum_probs=289.7
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
.+++....++...+..+...+...+.. |+.|.| ++ ++|.-+...+...+......+|.+..|+|+|+++|++.+
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e~~~~~~--LgqGfp-~~---~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~ 82 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAEHKVPNP--LGQGFP-DF---PPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAY 82 (420)
T ss_pred cccccccCCcHHHHHHHHHHhcCCCCc--ccCCCC-CC---CCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHH
Confidence 344444555433333333333222222 999997 65 444444444444444445788999999999999999998
Q ss_pred cCCCCcc-ccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec------CCCCC
Q 013839 106 YGKDSDV-VKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY------DPDSK 178 (435)
Q Consensus 106 ~~~~~~~-~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~------~~~~~ 178 (435)
...++.- ...++|. +|.|+++++..+ ++.++++||+|++.+|.|..|...+.++|.+++.++.. ..++|
T Consensus 83 se~~~~~~~~~~eVl--VT~GA~~ai~~~--~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~ 158 (420)
T KOG0257|consen 83 SEFYGGLLDPDDEVL--VTAGANEAISSA--LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDW 158 (420)
T ss_pred HHHhccccCCcccEE--EecCchHHHHHH--HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccc
Confidence 4322221 2256788 999999999877 89999999999999999999999999999999999985 35669
Q ss_pred CcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc
Q 013839 179 SLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED 258 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 258 (435)
.+|.++++.++. ++|++|++|+||||||.++++++|++|+++|++||+++|.||+|..+.+++ .++..+..+++.
T Consensus 159 ~~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~--~~h~r~aslPgm 233 (420)
T KOG0257|consen 159 TLDPEELESKIT---EKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDG--NKHIRIASLPGM 233 (420)
T ss_pred cCChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC--CcceeeecCCch
Confidence 999999999999 789999999999999999999999999999999999999999999999986 335566666888
Q ss_pred CCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhh-HH-HHHHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNL-KS-LWIDEVK 336 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l-~~-~~~~~~~ 336 (435)
.++++.++|+||+||++|||+||+++ ++. +...+...++.....++++.|.|.++++..+.. .. .-.....
T Consensus 234 ~ertitvgS~gKtf~~TGWrlGW~ig---p~~----L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~ 306 (420)
T KOG0257|consen 234 YERTITVGSFGKTFGVTGWRLGWAIG---PKH----LYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFIT 306 (420)
T ss_pred hheEEEeccccceeeeeeeeeeeeec---hHH----hhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHH
Confidence 99999999999999999999999975 888 889899988888889999999998888765420 00 0003345
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC--------H---------HHHHHHhhhccEEEeCCC--
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT--------P---------YQVDRLAKEFHIYMTQDG-- 397 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~--------~---------~~~~~ll~~~gI~i~pgg-- 397 (435)
.+.+.|+++|+.+.+.|.++| +++..|+|++|+|++++ . .++..++++.|+.+.|+.
T Consensus 307 ~~~~~y~~krdil~k~L~~lg----~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF 382 (420)
T KOG0257|consen 307 ELVKEYKEKRDILAKALEELG----LKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAF 382 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhcC----CccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhc
Confidence 589999999999999999998 56899999999999653 1 245788888999998862
Q ss_pred -------------cEEeccCCCCcHHHHHHHHH
Q 013839 398 -------------RISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 398 -------------Ris~~~~~~e~i~~~~~~l~ 417 (435)
|++++. +++.++.++++|+
T Consensus 383 ~s~~~~~~~~~~~r~~~~k-~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 383 GSREHIKVAERLVRFCFCK-ADETLRKAIERLK 414 (420)
T ss_pred CCchhhHHHHHHHHHHHHh-hHHHHHHHHHHHh
Confidence 777755 6777777777776
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=392.91 Aligned_cols=363 Identities=13% Similarity=0.080 Sum_probs=291.6
Q ss_pred ccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Q 013839 22 TVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEES 101 (435)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 101 (435)
++.+.+++...+.+.+..+.... ..++.|+|+.|.| +. +.++...+.+.+.+..+ ..+|++..|.++||+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~P-~~---~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~ai 100 (413)
T PLN00175 29 PLQVAKRLEKFKTTIFTQMSSLA---IKHGAINLGQGFP-NF---DGPDFVKEAAIQAIRDG-KNQYARGFGVPELNSAI 100 (413)
T ss_pred ccchhHHhhcCCCCHHHHHHHHh---hcCCeEecCCCCC-CC---CCCHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHHH
Confidence 33445555555655443333333 3458999999997 43 33333333333333333 46799999999999999
Q ss_pred HHhHcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 102 VKLVYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 102 a~~l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
++++....+..++++ +|. +|+|+++|+.++ +.++++|||+|++++|+|..+...++..|++++.+++. ++++++
T Consensus 101 a~~~~~~~g~~~~~~~~I~--vt~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~ 175 (413)
T PLN00175 101 AERFKKDTGLVVDPEKEVT--VTSGCTEAIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR-PPDFAV 175 (413)
T ss_pred HHHHHHHhCCCCCCCCCEE--EeCCHHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECC-cccCCC
Confidence 999954433345566 688 899999999888 77778999999999999999999999999999999983 445899
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
|+++|++.+. ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++ ...++..+.+..+
T Consensus 176 ~~~~l~~~~~---~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~---~~~s~~~~~~~~~ 249 (413)
T PLN00175 176 PEDELKAAFT---SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG---DHISMASLPGMYE 249 (413)
T ss_pred CHHHHHHhcC---cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC---cccChhhCCCCcC
Confidence 9999999987 578999999999999999999999999999999999999999999998863 2234444544457
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++|+++||||.|+++|+|+||+++ +++ +++.+.+.......+++.+.|.++..+|.+.+ .++++.++
T Consensus 250 ~vi~i~SfSK~~~~~G~RiG~~v~---~~~----l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~------~~~~~~~~ 316 (413)
T PLN00175 250 RTVTMNSLGKTFSLTGWKIGWAIA---PPH----LTWGVRQAHSFLTFATATPMQWAAVAALRAPE------SYYEELKR 316 (413)
T ss_pred cEEEEecchhhccCcchheeeeEe---CHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCH------HHHHHHHH
Confidence 899999999999999999999974 888 88888887766678899999999999997653 67888999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------C-HHHHHHHhhhccEEEeCC---------C----cEE
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------T-PYQVDRLAKEFHIYMTQD---------G----RIS 400 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~-~~~~~~ll~~~gI~i~pg---------g----Ris 400 (435)
.|+++++.+.+.|++.| +.+..+++|+|+|+.+ + .+++..+++++||.+.|| + ||+
T Consensus 317 ~~~~~~~~l~~~L~~~g----~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls 392 (413)
T PLN00175 317 DYSAKKDILVEGLKEVG----FKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFA 392 (413)
T ss_pred HHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEE
Confidence 99999999999999886 4577889999999864 2 346677877889999986 1 999
Q ss_pred eccCCCCcHHHHHHHHHHHHH
Q 013839 401 MAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 401 ~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++. +++++++++++|+++++
T Consensus 393 ~~~-~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 393 FCK-DEETLRAAVERMKTKLK 412 (413)
T ss_pred EcC-CHHHHHHHHHHHHHHHh
Confidence 986 88999999999998875
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=383.61 Aligned_cols=347 Identities=14% Similarity=0.157 Sum_probs=279.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.+++.++|+.|.| +. +.+...++++.+.+......+|+++.|.++||+++++++....+..++++ +|+ +|+|+
T Consensus 31 ~~~~~~~l~~g~p-~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~--it~G~ 104 (403)
T PRK08636 31 AGEDIIDFSMGNP-DG---PTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVV--ATMGS 104 (403)
T ss_pred cCCCEEEcCCcCC-CC---CCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEE--ECCCh
Confidence 4578999999997 32 33555666666655443357799999999999999999854433334566 798 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhH----HHHhhcCCCCcEEEEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL----MDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l----~~~i~~~~~~~~~v~~~ 202 (435)
++++.++ +.+++.+||+|++++|+|+.+...++..|++++.+++..++++++|++.+ ++++++..+++++++++
T Consensus 105 ~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~ 182 (403)
T PRK08636 105 KEGYVHL--VQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVN 182 (403)
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEe
Confidence 9999988 77788999999999999999999999999999999873234589998865 45454434578999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..+++..+....+++++++||||.||+||+|+||+
T Consensus 183 ~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i 260 (403)
T PRK08636 183 FPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFV 260 (403)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcCCCccccEEEEEecccccCCccceeeee
Confidence 9999999999999999999999999999999999999987641 22344444333467889999999999999999999
Q ss_pred EEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 283 SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
++ +++ +++.+.+.......+++.+.|.++..++... .+++++.++.++++++.+.+.|++.+ +
T Consensus 261 v~---~~~----li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~----~ 323 (403)
T PRK08636 261 VG---NKK----LVGALKKIKSWLDYGMFTPIQVAATIALDGD------QSCVEEIRETYRKRRDVLIESFANAG----W 323 (403)
T ss_pred eC---CHH----HHHHHHHHHHHhcccCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHHHCC----C
Confidence 64 888 8888877665545677788888887777543 26788899999999999999999875 4
Q ss_pred cccccCcceeEecCCC--------HHHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 363 EHITNQLGMFCFSGLT--------PYQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 363 ~~~~~~~g~~~~~~~~--------~~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
.+..+++|+|+|+.+. .+++..+++++||.+.|| | ||+++. +++++++++++|+++++.
T Consensus 324 ~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 324 ELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENRIRQAARNIKKFLKE 400 (403)
T ss_pred cccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 5778899999999763 345567777799999997 1 999984 889999999999999865
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=383.47 Aligned_cols=358 Identities=10% Similarity=0.089 Sum_probs=283.1
Q ss_pred CCCCCeeeeecceecCCC-CCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDK-GRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
..++++|+|+.|+| +.. .+.++.++.+.+...+..+...+|.+..|.++||+++|+++....+..+++++|+ +|+|
T Consensus 63 ~~~~~vi~l~~Gdp-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~--it~G 139 (462)
T PLN02187 63 DVNKTILPLGHGDP-SVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIF--LTAG 139 (462)
T ss_pred CCCCCeEECCCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEE--EeCC
Confidence 45689999999987 422 2344555655555555545456799999999999999999955444456789999 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+++++.++ +..+++|||+|++++|+|+.|...++..|++++.+++.++++|++|+++|++++. ++++++++++||
T Consensus 140 ~~~al~~~--~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~---~~~~~v~i~nP~ 214 (462)
T PLN02187 140 CNQGIEIV--FESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD---ENTVAMVVINPN 214 (462)
T ss_pred HHHHHHHH--HHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC---CCcEEEEEeCCC
Confidence 99999998 7777899999999999999999999999999999988544579999999999886 578999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.|++. ...++..+.. ..++|+++||||.|++||+|+||+++
T Consensus 215 NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~--~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRiG~~v~- 290 (462)
T PLN02187 215 NPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN--PFVSMGKFAS-IVPVLTLAGISKGWVVPGWKIGWIAL- 290 (462)
T ss_pred CCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CceeHHHhcc-CCcEEEEecchhhcCCccceeEEEEe-
Confidence 9999999999999999999999999999999999988642 2234444432 25799999999999999999999973
Q ss_pred ecChhHHHHHHHHHHHHhhcccc--CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYG--SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE 363 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 363 (435)
.+++....++..+......... +++.+.|.++..+|.+.. .+++++.++.++++++.+.+.|++++. ...
T Consensus 291 -~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~-----~~~l~~~~~~l~~~r~~l~~~L~~~~~--~~~ 362 (462)
T PLN02187 291 -NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD-----KNFFAKKNKILKHNVDLVCDRLKDIPC--VVC 362 (462)
T ss_pred -cCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHHHHhhCCC--CcC
Confidence 2333222234455554443322 458999999999997521 277888999999999999999998752 112
Q ss_pred ccccCcceeEecCC---------CH-HHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 364 HITNQLGMFCFSGL---------TP-YQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 364 ~~~~~~g~~~~~~~---------~~-~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
...|++|+|+|+.+ +. +++..+++++||.+.||. ||+++. +++++++++++|+++++....
T Consensus 363 ~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~-~~e~l~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 363 PKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGV-EAHMLEDALERLKGFCTRHAK 441 (462)
T ss_pred CCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHHhhh
Confidence 34678999999854 22 456777788999999982 999986 788999999999999976553
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=381.49 Aligned_cols=342 Identities=12% Similarity=0.107 Sum_probs=268.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.+.++|+|+.|++ +. ++++...+.+...+......+|+++.|.++||+++++++....+..++++ +|. +|+|+
T Consensus 28 ~~~~~i~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~--it~Gs 101 (388)
T PRK07366 28 AGKELIDLSLGSS-DL---PAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVL--PLIGS 101 (388)
T ss_pred cCCCeEEeCCCCC-CC---CCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEE--ECCCc
Confidence 4678999999996 32 33444444444344333356799999999999999999955444445577 688 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++.+++++.+|++++++.+. ++++++++++|||
T Consensus 102 ~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~N 176 (388)
T PRK07366 102 QEGTAHL--PLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL---AQARLMVLSYPHN 176 (388)
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc---ccceEEEEeCCCC
Confidence 9999988 6777899999999999999999999999999999998434457889999988776 5678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++|+++||+||+|.++.+++. ...+++..+....+++|+++||||.||+||+|+||+++
T Consensus 177 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-- 253 (388)
T PRK07366 177 PTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE-VEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-- 253 (388)
T ss_pred CCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC-CCCCChhhCCCCcccEEEEeecccccCCcchhheehcC--
Confidence 999999999999999999999999999999999987642 11233433333345789999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.+.......+.+...+.++.+.+.+. ++++++.++.++++++.+.+.|++++ +.+..
T Consensus 254 -~~~----li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~------~~~l~~~~~~~~~~r~~l~~~L~~~~----~~~~~ 318 (388)
T PRK07366 254 -NAQ----LIQALRQVKAVVDFNQYRGILNGAIAALTGP------QATVQQTVQIFRQRRDAFINALHQIG----WPVPL 318 (388)
T ss_pred -CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHHHCC----CcccC
Confidence 888 8888887665444444333344444444432 27788999999999999999999876 45667
Q ss_pred cCcceeEecCCC-------HHHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGLT-------PYQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 367 ~~~g~~~~~~~~-------~~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+++|+|+|+.+. .++++.+++++||.+.|| | ||+++. +++++++++++|+++
T Consensus 319 p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 319 PEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAF 387 (388)
T ss_pred CCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 899999999662 234567777889999997 1 999986 788999999999875
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=381.04 Aligned_cols=338 Identities=16% Similarity=0.137 Sum_probs=274.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~g 125 (435)
.+++.|+|+.|.| +. ++ ++.+.+++.... ....+.|+ ..|.++||++|++++...++..+++ ++|+ +|+|
T Consensus 30 ~~~~~i~l~~g~p-~~---~~-~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~--it~G 101 (399)
T PRK07681 30 AGHKMIDLSIGNP-DM---PP-ADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVL--LLMG 101 (399)
T ss_pred cCCCeEEeCCCCC-CC---CC-CHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEE--ECCC
Confidence 3578999999996 32 22 334454444433 32234465 4899999999999996544444567 7898 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+++++.++ +.+++.+||+|++++|+|+.|...++..|++++.+++.+++++.+|++++++++. ++++++++++||
T Consensus 102 ~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~ 176 (399)
T PRK07681 102 SQDGLVHL--PMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA---DKAKMMILNFPG 176 (399)
T ss_pred cHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCC
Confidence 99999888 6777899999999999999999999999999999998434457889999998886 578999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+....+++|+++||||.||++|+|+||+++
T Consensus 177 NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~- 253 (399)
T PRK07681 177 NPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG- 253 (399)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCCCcccEEEEeecccccCCccceeEEEec-
Confidence 9999999999999999999999999999999999987642 2223333333456899999999999999999999974
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+.+.......+++.+.|.++..+|.+.. +++++.++.++++++.+.+.|++.| +.+.
T Consensus 254 --~~~----l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~ 317 (399)
T PRK07681 254 --NEE----IVRALTQFKSNTDYGVFLPIQKAACAALRNGA------AFCEKNRGIYQERRDTLVDGFRTFG----WNVD 317 (399)
T ss_pred --CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHCC----Cccc
Confidence 888 88888877665566888999999999998753 6778888899999999999999876 4566
Q ss_pred ccCcceeEecCC----C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL----T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 366 ~~~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~ 418 (435)
.+++|+|+|+.+ + .+++..+++++||.+.||. ||+++. +++++++++++|++
T Consensus 318 ~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 318 KPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred CCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 788999999865 2 3456777776899999871 999985 77999999999988
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=385.68 Aligned_cols=365 Identities=16% Similarity=0.148 Sum_probs=282.5
Q ss_pred CCCCeeeeecceecC---------------CCCCc----------ccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHH
Q 013839 48 PSPYKINLGVGAYRD---------------DKGRP----------VVLQCVREAEAKIAG--SEFLESISASVSTKMVEE 100 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~---------------~~~~~----------~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ 100 (435)
++.++|+|++|+|.+ +..+. .|...++++...+.. .....|+++.|.++||++
T Consensus 44 ~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~a 123 (481)
T PTZ00377 44 PFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKA 123 (481)
T ss_pred CcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHH
Confidence 457999999999821 21110 134555555443332 234669999999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCC
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF-HPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKS 179 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (435)
|++++...++.++++++|+ +|+|+++++.++ +..++ ++||+|++++|+|+.|...++..|++++.+++..+++|+
T Consensus 124 ia~~~~~~~g~~~~~~~I~--it~Ga~~al~~~--~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~ 199 (481)
T PTZ00377 124 VAAFIERRDGVPKDPSDIF--LTDGASSGIKLL--LQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWS 199 (481)
T ss_pred HHHHHHHhcCCCCChhhEE--EcCCHHHHHHHH--HHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCC
Confidence 9999965545556689999 999999999998 66677 699999999999999999999999999999985445689
Q ss_pred cChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-
Q 013839 180 LDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF- 255 (435)
Q Consensus 180 ~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~- 255 (435)
+|+++|++.+... ..+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ....++...
T Consensus 200 ~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~-~~~~s~~~~~ 278 (481)
T PTZ00377 200 LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGE-KPFISFRKVL 278 (481)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCC-CCcccHHHHH
Confidence 9999999998631 12688888899999999999999999999999999999999999999988421 122233221
Q ss_pred ---hhc---CCeEEEEeccccc-ccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh---
Q 013839 256 ---LED---EHLIGCAQSYAKS-MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP--- 325 (435)
Q Consensus 256 ---~~~---~~~~i~~~s~SK~-~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~--- 325 (435)
... ..++|+++||||. ++++|||+||+++...+++ +++++.+.+. ...+++.++|.++..+|..+
T Consensus 279 ~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~----li~~l~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~ 353 (481)
T PTZ00377 279 LELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE----VREQIYKLAS-INLCSNVVGQLMTGLMCNPPREG 353 (481)
T ss_pred HhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH----HHHHHHHHhh-eecCCChHHHHHHHHHhCCCCCC
Confidence 111 2369999999997 6999999999963113777 8888888664 34568899999999999642
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC-----------------HHHHHHHhh
Q 013839 326 -NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT-----------------PYQVDRLAK 387 (435)
Q Consensus 326 -~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~ll~ 387 (435)
...+.+.+++++.++.++++++.+.+.|++++ ++.+..++||||+|+.+. .+++..+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~---g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 430 (481)
T PTZ00377 354 DASYPLYKRERDAIFTSLKRRAELLTDELNKIE---GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLE 430 (481)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHH
Confidence 12233445666667788999999999998873 267888999999996531 224567888
Q ss_pred hccEEEeCCC-----------cEEeccCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 388 EFHIYMTQDG-----------RISMAGVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 388 ~~gI~i~pgg-----------Ris~~~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
++||.+.||. |+||+ .+++++++++++|++++++..++
T Consensus 431 ~~gV~v~pG~~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 431 STGIVVVPGSGFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred HcCEEEeCCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999872 99998 47789999999999999876544
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=378.08 Aligned_cols=353 Identities=15% Similarity=0.159 Sum_probs=282.6
Q ss_pred CCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc
Q 013839 33 AKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV 112 (435)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 112 (435)
....+.+..+..+ ..++.|+|+.|+| +. ++++..++++....... ...|+++.|.++||+++++++....+..
T Consensus 14 ~~~~~~~~~~~~~--~~~~~i~l~~g~p-~~---~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~ 86 (384)
T PRK06348 14 EVNIMAEIATLAK--KFPDIIDLSLGDP-DL---ITDESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDLS 86 (384)
T ss_pred CccHHHHHHHHHH--hcCCcEEcCCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 3333434444432 2357899999996 33 33444555555554433 5679999999999999999995444444
Q ss_pred ccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 113 VKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 113 ~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+++++|+ +|+|+++|+.++ +.+++.+||+|++++|+|.++...++..|++++.++..+++++++|++++++.+.
T Consensus 87 ~~~~~i~--it~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-- 160 (384)
T PRK06348 87 FKRNEIM--ATVGACHGMYLA--LQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALIT-- 160 (384)
T ss_pred CChhhEE--EcCChHHHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC--
Confidence 5688999 999999999988 7777899999999999999999999999999999987445568899999999886
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++ ...++..+....+++|+++||||.+
T Consensus 161 -~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~~ 236 (384)
T PRK06348 161 -SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE---DFVPMATLAGMPERTITFGSFSKDF 236 (384)
T ss_pred -cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC---CccchhhcCCCcCcEEEEecchhcc
Confidence 567888999999999999999999999999999999999999999998763 2223444433357899999999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
|+||+|+||+++ +++ +++.+.........+++.++|.++..++...+ +++++.++.++++++.+.+.
T Consensus 237 ~l~GlRiG~~v~---~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~r~~~~~~~ 303 (384)
T PRK06348 237 AMTGWRIGYVIA---PDY----IIETAKIINEGICFSAPTISQRAAIYALKHRD------TIVPLIKEEFQKRLEYAYKR 303 (384)
T ss_pred CCccccceeeec---CHH----HHHHHHHHHHhccCCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999974 787 88888877766566789999999999987543 67788899999999999999
Q ss_pred HHhhCCCCCccccccCcceeEecCC-----CH-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHH
Q 013839 353 LEKLGSSLNWEHITNQLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 353 l~~~~~~~~~~~~~~~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l 416 (435)
|+.++ .+.+..+++|+|+|+.+ +. +++..+++++||.+.||. |++++. +++++++++++|
T Consensus 304 L~~~~---~~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l 379 (384)
T PRK06348 304 IESIP---NLSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GIEVLEEAFNRI 379 (384)
T ss_pred HhcCC---CceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 98763 25677889999999754 33 455667777899999872 999975 888899999988
Q ss_pred HHH
Q 013839 417 HEV 419 (435)
Q Consensus 417 ~~~ 419 (435)
+++
T Consensus 380 ~~~ 382 (384)
T PRK06348 380 EKM 382 (384)
T ss_pred Hhh
Confidence 754
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=378.50 Aligned_cols=345 Identities=14% Similarity=0.093 Sum_probs=276.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg~~ 128 (435)
++.|+|+.|.| +. .++++...+.+...+.......|++..|.++||++|++++....+.++.+ ++|+ +|+|+++
T Consensus 39 ~~~i~l~~g~~-~~--~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~--it~Ga~~ 113 (405)
T PRK06207 39 GRPVDFSHGDV-DA--HEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELI--ITPGTQG 113 (405)
T ss_pred CCceecCCcCC-CC--CCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEE--EeCCcHH
Confidence 58899999997 32 13334455555555443334679999999999999999985443333456 7898 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC---CCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD---PDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
++.++ +..++.+||+|++++|+|+.+...++..|++++.+++.. ++++++|+++|++++. ++++++++++||
T Consensus 114 al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~ 188 (405)
T PRK06207 114 ALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNPN 188 (405)
T ss_pred HHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCCC
Confidence 99888 777789999999999999999999999999999998731 2358999999999887 568899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+....+++++++||||.|+++|+|+||+++
T Consensus 189 NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~- 265 (405)
T PRK06207 189 NPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT--SYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFG- 265 (405)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCchhcCCCCcCcEEEEecchhhccCcccceEEEEc-
Confidence 9999999999999999999999999999999999988642 2223333333357899999999999999999999964
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+.+.......+.+.+.|.++..+|.+.. .++++.+++++++++.+.+.|+.++ .+.+.
T Consensus 266 --~~~----l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~~~~---~~~~~ 330 (405)
T PRK06207 266 --SPA----IIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD------GWMKDRIARHQAIRDDLLRVLRGVE---GVFVR 330 (405)
T ss_pred --CHH----HHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHhcCC---Cceec
Confidence 888 88888877766666788899999999997642 3455666777888888999998763 25677
Q ss_pred ccCcceeEecCCC-----HH-HHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 366 TNQLGMFCFSGLT-----PY-QVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 366 ~~~~g~~~~~~~~-----~~-~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++|+|+|+.+. .+ +...+++++||.+.||. ||+++. +.+++++++++|++++++.
T Consensus 331 ~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 331 APQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQLIERY 403 (405)
T ss_pred CCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 7899999999762 23 45666567899999972 999987 7899999999999988653
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=378.02 Aligned_cols=355 Identities=12% Similarity=0.100 Sum_probs=282.9
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+.++|+|+.|+|.-.+.++++++..+.+...+..+....|++..|.+++|+++++++....+..+++++|+ +|+|+++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~--it~G~~~ 128 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIY--LTAGCAQ 128 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEE--EeCCHHH
Confidence 67899999999732323455556655555555544355799999999999999999965555556788999 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
|+.++ +..++.+||+|++++|+|+.|.......|++++.+++..+++|++|++.+++.++ ++++++++++|||||
T Consensus 129 al~l~--~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P~NPt 203 (430)
T PLN00145 129 AIEII--MSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINPNNPC 203 (430)
T ss_pred HHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCCCCCC
Confidence 99998 6666789999999999999999999999999999987545578999999999887 678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++|+++|++||+||+|.++.|++ ....++..+. ...++|+++||||.|++||||+||+++ ..+
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~--~~~~~~~~~~-~~~~vi~~~S~SK~~~~pG~RlG~iv~-~~~ 279 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS--KPFVPMGVFG-EVAPVLTLGSISKRWVVPGWRLGWIAT-CDP 279 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCC--CCccchhhhc-ccCcEEEEeccccccCCCCeeEEEEEE-ecc
Confidence 999999999999999999999999999999998864 1223443442 346899999999999999999999974 223
Q ss_pred hhHHH--HHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc-c
Q 013839 289 SKQAA--AIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH-I 365 (435)
Q Consensus 289 ~~~~~--~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~ 365 (435)
+...+ .++..++... ....+++.+.|.++..+|.+.. +++.++.+++++++++.+.+.|++++. +.+ .
T Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~~g---~~~~~ 350 (430)
T PLN00145 280 NGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANTK-----EEFFTKTLGLLKETADICYEKIKEIKC---ITCPH 350 (430)
T ss_pred hhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCc
Confidence 33111 1234444443 3444678899999999997531 367888899999999999999988732 343 4
Q ss_pred ccCcceeEecCCC----------HHHHHHHhhhccEEEeCC---C-----cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 366 TNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQD---G-----RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 366 ~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pg---g-----Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.|++++|+|+.++ .+++.++++++||.+.|| | ||+|+. ++++++.++++|++++.+..
T Consensus 351 ~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~-~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 351 KPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI-DPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred CCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHHhc
Confidence 6899999998653 246678888899999998 2 999986 88889999999999987654
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=387.90 Aligned_cols=374 Identities=12% Similarity=0.083 Sum_probs=287.6
Q ss_pred ccccCCCCCCchh---hHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHH
Q 013839 26 WDHVAPAAKDPIN---GVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 26 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 102 (435)
.+++...+.+... ...++. +..++++|+|+.|+| +..++++|...++++..++.. ...|++..|.++||++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~--~~~Y~~~~G~~~lReaia 195 (517)
T PRK13355 120 SHKLDNVLYDVRGPVVDEANRM-EAAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTD--TEGYSDSKGLFSARKAIM 195 (517)
T ss_pred hHHhhccCccHHHHHHHHHHHH-HHcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhc--CCCCCCCcChHHHHHHHH
Confidence 4444444444332 333333 235689999999997 433455677777777666643 456999999999999999
Q ss_pred HhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcCh
Q 013839 103 KLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDF 182 (435)
Q Consensus 103 ~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 182 (435)
+++...+...+++++|+ +|+|+++++.++ +.+++++||+|++++|+|+.|...++..|++++.+++..+++|.+|+
T Consensus 196 ~~~~~~~~~~~~~~~I~--it~G~~eal~~~--~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~ 271 (517)
T PRK13355 196 QYAQLKGLPNVDVDDIY--TGNGVSELINLS--MSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDI 271 (517)
T ss_pred HHHHhcCCCCCChhHEE--EeCcHHHHHHHH--HHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCH
Confidence 99955444346689999 999999999888 67778999999999999999999999999999999884445689999
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+++++++. +++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+. ....+
T Consensus 272 ~~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~--~~~s~~~~~-~~~~v 345 (517)
T PRK13355 272 DDIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGL--EHTSIASLA-PDLFC 345 (517)
T ss_pred HHHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC--CcccHHHhC-CCCeE
Confidence 99999887 6789999999999999999999999999999999999999999999988642 233443332 22357
Q ss_pred EEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 263 i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
++++||||.|+++|||+||+++ ..+++....++..+.... ....+++.++|.++..+|..... +.++++.. +++
T Consensus 346 i~~~S~SK~~~~~G~RiG~~i~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~---~~~~~~~~-~~~ 419 (517)
T PRK13355 346 VTFSGLSKSHMIAGYRIGWMIL-SGNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGHQS---VKDYLVPG-GRV 419 (517)
T ss_pred EEEecchhhccCcccceEEEEe-eCchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCCcc---HHHHHHHH-HHH
Confidence 8889999999999999999974 224553334555554433 33456888999999999965321 23455544 344
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------HHHHHHHhhhccEEEeCCC----------cEEecc
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------PYQVDRLAKEFHIYMTQDG----------RISMAG 403 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~ll~~~gI~i~pgg----------Ris~~~ 403 (435)
.++++.+.+.|++++ ++.+..|+++||+|+.++ .+++..+++++||.+.||. ||+|+.
T Consensus 420 ~~~r~~l~~~L~~~~---g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~ 496 (517)
T PRK13355 420 YEQRELVYNALNAIP---GISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLP 496 (517)
T ss_pred HHHHHHHHHHHhcCC---CcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCC
Confidence 556789999998873 267889999999997552 3566788888999999871 999965
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 013839 404 VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++++|+++++..
T Consensus 497 -~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 497 -RLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred -CHHHHHHHHHHHHHHHHHh
Confidence 8899999999999998643
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=377.44 Aligned_cols=356 Identities=14% Similarity=0.112 Sum_probs=274.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.++++|++|+| +..+.++| +.+.+++.+. ......+|.+..|.++||+++++++...++..+++++|+ +|+|+
T Consensus 30 ~g~~~~~~~~G~p-~~~~~~~p-~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~--it~G~ 105 (433)
T PRK06855 30 LGVKITWENIGDP-IAKGEKIP-DWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDII--FFNGL 105 (433)
T ss_pred ccccccccccCCC-cccCCCCC-HHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEE--EcCcH
Confidence 4567899999997 32222333 3444444443 233456799999999999999999965545556789999 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
++++.++ + .++.+||.|++++|+|+.|... ....|++++.+++.++++|++|+++|++.+... ++++++++++||
T Consensus 106 ~~al~~~--~-~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~i~l~~P~ 181 (433)
T PRK06855 106 GDAIAKI--Y-GLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN-PSIAGILLINPD 181 (433)
T ss_pred HHHHHHH--H-HhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC-CCceEEEEECCC
Confidence 9999887 4 3678999999999999988754 345688888898843456889999999998632 356888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.|++. ..+++..+.. ..++|+++||||.+++||+|+||+++.
T Consensus 182 NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~ii~p 258 (433)
T PRK06855 182 NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK--KTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWIEVY 258 (433)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCCHHHHcC-cCCeEEEecCccccCCCcceEEEEEEe
Confidence 9999999999999999999999999999999999988641 2334444422 236799999999999999999999731
Q ss_pred ec-ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 286 CV-DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 286 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
.. ....+..+++.+..... ...+++.+.|.++..++.++. +++++++.++.|+++++.+.+.|+.++ .+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~~L~~~~---~~~~ 330 (433)
T PRK06855 259 NADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPE----YKNYLKERNKRYEKRSNIAYEKLKDVP---GLKV 330 (433)
T ss_pred CCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCc----HHHHHHHHHHHHHHHHHHHHHHHhcCC---Ceec
Confidence 00 11222334455544333 245678899999999998754 457888999999999999999998763 2567
Q ss_pred cccCcceeEecCCC--------------------------------HHHHHHHhhhccEEEeCCC---------cEEecc
Q 013839 365 ITNQLGMFCFSGLT--------------------------------PYQVDRLAKEFHIYMTQDG---------RISMAG 403 (435)
Q Consensus 365 ~~~~~g~~~~~~~~--------------------------------~~~~~~ll~~~gI~i~pgg---------Ris~~~ 403 (435)
..+++|||+|+.+. .+++..+++++||.+.||. ||||+.
T Consensus 331 ~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~ 410 (433)
T PRK06855 331 NRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE 410 (433)
T ss_pred cCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC
Confidence 78999999999663 1345567788999999982 999987
Q ss_pred CCCCcHHHHHHHHHHHHHh
Q 013839 404 VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~ 422 (435)
.+++++++++++|++++++
T Consensus 411 ~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 411 RDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 7899999999999999875
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=375.91 Aligned_cols=363 Identities=14% Similarity=0.115 Sum_probs=278.9
Q ss_pred HHHHhcCCCCCeeeeecceecCC-CCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCee
Q 013839 41 TEAFLADPSPYKINLGVGAYRDD-KGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 41 ~~~~~~~~~~~~i~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.+.++.++++|+|++|+| ++ ..+++|+.+...+.+.+......+|+|..|.++||+++++++....+..+++++|+
T Consensus 23 ~~~~~~~~~~~~i~l~~G~p-~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~ 101 (409)
T PLN00143 23 KENFNEDDHRLAISFGFGDP-SCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVY 101 (409)
T ss_pred HHhcccCCCCceeeCCCCCC-CCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEE
Confidence 33444667899999999997 41 11244444444444444444356699999999999999999965544456689999
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEE
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL 199 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v 199 (435)
+|+|+++++.++ +.+++.+||.|++++|+|+.|...++..|++++.+++.+++++.+|++.|++++. ++++++
T Consensus 102 --it~G~~~al~~~--~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~~ 174 (409)
T PLN00143 102 --LTLGCKHAAEII--IKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD---ENTIAM 174 (409)
T ss_pred --EecChHHHHHHH--HHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc---cCCEEE
Confidence 999999999998 7777899999999999999999999999999999988445568899999998886 567899
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+ +..+++|+++||||.|+++|+|+
T Consensus 175 ~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f~~pGlRv 251 (409)
T PLN00143 175 VIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK--PFVPMGLF-ASIVPVITLGSISKRWMIPGWGL 251 (409)
T ss_pred EEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC--CCcchhhh-cccCcEEEEccchhhcCCCccce
Confidence 9999999999999999999999999999999999999999988641 22233333 33468999999999999999999
Q ss_pred cEEEEEecChhHHH--HHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAA--AIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
||+++ ..++...+ .++..+.+.... ...++.+.|.++..+|.+.. ..+.++.+++++++++.+.+.|++++
T Consensus 252 G~~v~-~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~~ 324 (409)
T PLN00143 252 GWLVT-CDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTT-----EDFFSKTINILRAALAFCYDKLKEIP 324 (409)
T ss_pred EEEEe-eCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99963 21333111 133444443322 23357899999999987531 25677778888888888888888765
Q ss_pred CCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHH
Q 013839 358 SSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
. ......|++|+|+|+.+. .+++..+++++||.+.||. ||+++. +++++++++++|+++
T Consensus 325 ~--~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~-~~~~l~~al~rl~~~ 401 (409)
T PLN00143 325 C--IMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV-EQSSLEDGLGRLKSF 401 (409)
T ss_pred C--CCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC-CHHHHHHHHHHHHHH
Confidence 2 111346889999999763 2455677788999999972 999986 789999999999999
Q ss_pred HHhhh
Q 013839 420 TRSEQ 424 (435)
Q Consensus 420 l~~~~ 424 (435)
+++..
T Consensus 402 l~~~~ 406 (409)
T PLN00143 402 CGRHA 406 (409)
T ss_pred HHHhc
Confidence 86543
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=380.36 Aligned_cols=360 Identities=16% Similarity=0.150 Sum_probs=284.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--C-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--S-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
..++.|+|+.|.+ ..|...++++...+.. + ...+|+++.|.++||++|++++...++.++++++|+ +|+
T Consensus 127 ~~p~~i~~~~~~~------~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~--iT~ 198 (534)
T PLN02231 127 DHPSLLDKSETHG------LFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIF--LTD 198 (534)
T ss_pred cCCccCCCCCccc------cCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEE--EeC
Confidence 4578899987664 3444777777766653 2 356799999999999999999976666667799999 999
Q ss_pred CchhHHHHHHHHHHHhC-CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC---CCcEEEE
Q 013839 125 SGTGACRLFAEFQRRFH-PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP---DSSFFLL 200 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~v~ 200 (435)
|+++|+.++ +..++. +||.|+++.|+|+.|...+...|++++.|++..+++|++|+++|++.+++.. .++++++
T Consensus 199 Ga~~ai~~~--~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv 276 (534)
T PLN02231 199 GASPAVHMM--MQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV 276 (534)
T ss_pred CHHHHHHHH--HHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 999999998 666664 7999999999999999999999999999998544568999999999987421 2578999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh------cCCeEEEEecccccc-c
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE------DEHLIGCAQSYAKSM-G 273 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~s~SK~~-g 273 (435)
++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ....++..+.. ...++++++|+||.+ |
T Consensus 277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g 355 (534)
T PLN02231 277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG 355 (534)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEeccCccccc
Confidence 999999999999999999999999999999999999999998531 12334433321 123699999999975 8
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP----NLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
++|+|+||+++...+++ +++.+.+... ...+++...|.++..++..+ ...+.+.++...+++.++++++.+
T Consensus 356 ~pGlRiGy~~~~~~~~~----l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l 430 (534)
T PLN02231 356 ECGKRGGYMEVTGFTSD----VREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTL 430 (534)
T ss_pred CCccceEEEEEecCCHH----HHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999974222677 7777777654 34567788899988888653 223334455667789999999999
Q ss_pred HHHHHhhCCCCCccccccCcceeEecCC--CH---------------HHHHHHhhhccEEEeCCC-----------cEEe
Q 013839 350 RQNLEKLGSSLNWEHITNQLGMFCFSGL--TP---------------YQVDRLAKEFHIYMTQDG-----------RISM 401 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~~---------------~~~~~ll~~~gI~i~pgg-----------Ris~ 401 (435)
.+.|+++. ++.+.+++||||+|+.+ .. .++..++++.||.++||. |+++
T Consensus 431 ~~~L~~~~---gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~ 507 (534)
T PLN02231 431 EDALNSLE---GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI 507 (534)
T ss_pred HHHHhcCC---CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe
Confidence 99999873 26788999999999544 21 134667888999999972 8999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhhhhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSEQETA 427 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~~~~~ 427 (435)
.. +++++++++++|++++++..++.
T Consensus 508 ~~-~~e~l~eal~RL~~~~~~~~~~~ 532 (534)
T PLN02231 508 LP-QEDKIPAIVSRLTEFHKSFMDEF 532 (534)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 88999999999999988766553
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=374.23 Aligned_cols=340 Identities=15% Similarity=0.131 Sum_probs=268.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.+++.|+|+.|+| +. +.++...+.+...+.......|+|..|.++||+++++++....+.+++++ +|+ +|.|+
T Consensus 30 ~~~~~i~l~~~~p-~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~--it~G~ 103 (389)
T PRK08068 30 EGHDVINLGQGNP-DQ---PTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVA--ILFGG 103 (389)
T ss_pred cCCCeEEecCCCC-CC---CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEE--EcCCc
Confidence 3467899999986 32 33333333333333333356799999999999999999843333334466 788 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +.+++.+||+|++++|+|..|...++..|++++.+|+.+++++.+|++++++.+. .+++++++++|||
T Consensus 104 ~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~N 178 (389)
T PRK08068 104 KAGLVEL--PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA---EKAKLMYLNYPNN 178 (389)
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc---ccceEEEEECCCC
Confidence 9999887 7777899999999999999999999999999999998434467889999998886 5688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++|+++||+||+|.++.+++. ...+.....+..+++++++||||.||++|+|+||+++
T Consensus 179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-- 254 (389)
T PRK08068 179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ--KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-- 254 (389)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC--CCcChhhCCCccCCEEEEecchhccCCccceeEeEec--
Confidence 999999999999999999999999999999998887531 1223222233456889999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.+.......+.+.+.|.++..++.+.. ++++..+++++++++.+.+.|+++| +.+.+
T Consensus 255 -~~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~r~~~~~~L~~~g----~~~~~ 319 (389)
T PRK08068 255 -NES----VIEAINLLQDHLFVSLFGAIQDAAIEALLSDQ------SCVAELVARYESRRNAFISACREIG----WEVDA 319 (389)
T ss_pred -CHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHCC----CcccC
Confidence 888 88888877665556666777888888876543 6788899999999999999999886 45778
Q ss_pred cCcceeEecCC----CHH-HHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 367 ~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+++|+|+|+.+ +.+ +.+.+++++||.+.||. ||+++. +++.+..++++|++
T Consensus 320 ~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~ 385 (389)
T PRK08068 320 PKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGK 385 (389)
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHH
Confidence 89999999865 333 44666656799999861 999975 66777777777765
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=372.96 Aligned_cols=364 Identities=14% Similarity=0.083 Sum_probs=285.5
Q ss_pred CchhhHHHHH-hcCCCCCeeeeecceecCC-CCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc
Q 013839 35 DPINGVTEAF-LADPSPYKINLGVGAYRDD-KGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV 112 (435)
Q Consensus 35 ~~~~~~~~~~-~~~~~~~~i~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 112 (435)
+.+..++++. .+..++++|+|++|+| +. ..++++....+++.+.+......+|.+..|.+++|+++++++....+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 93 (409)
T PLN02656 15 GILSLLMESIDDEENGKRVISLGMGDP-TAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYK 93 (409)
T ss_pred hHHHHHHHhccccccCCeeeecCCCCC-CcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3444555554 2345689999999997 31 1124444444444444544445679999999999999999996544445
Q ss_pred ccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 113 VKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 113 ~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+++++|+ +|+|+++++.++ +.+++.+||+|++++|+|+.+....+..|++++.+++.+++++.+|++.+++.+.
T Consensus 94 ~~~~~i~--~t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~-- 167 (409)
T PLN02656 94 LSLDDVF--ITSGCTQAIDVA--LSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD-- 167 (409)
T ss_pred CCcccEE--EeCChHHHHHHH--HHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc--
Confidence 6688998 999999999888 6667899999999999999998888889999999998434568899999999886
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+ +...++|+++||||.|
T Consensus 168 -~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f 243 (409)
T PLN02656 168 -QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN--PFVPMGVF-GSIVPVLTLGSLSKRW 243 (409)
T ss_pred -cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CcccHHHh-cccCcEEEEcccchhc
Confidence 5688999999999999999999999999999999999999999999988642 22333333 3346899999999999
Q ss_pred cccCCcccEEEEEec------ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCV------DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 273 g~~G~RvG~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
+++|+|+||+++ .+ +++ +++.+.+.... ..+++.+.|.++..+|.+.. +.++++.++++++++
T Consensus 244 ~~pGlRiG~~i~-~~~~~~~~~~~----~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~r 312 (409)
T PLN02656 244 IVPGWRLGWFVT-TDPSGSFRDPK----IVERIKKYFDI-LGGPATFIQAAVPTILEQTD-----ESFFKKTINILKQSS 312 (409)
T ss_pred cCcceeEEEEEE-eCcccccccHH----HHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHH
Confidence 999999999973 11 235 77777765443 45678999999999997532 267888899999999
Q ss_pred HHHHHHHHhhCCCCCccccccCcceeEecCCC---------H-HHHHHHhhhccEEEeCCC--------cEEeccCCCCc
Q 013839 347 TTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------P-YQVDRLAKEFHIYMTQDG--------RISMAGVTTGN 408 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------~-~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~ 408 (435)
+.+.+.|+.++. ......|++|+|+|+.++ . +++.++++++||.+.||. ||+++. ++++
T Consensus 313 ~~~~~~L~~~~~--~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~-~~e~ 389 (409)
T PLN02656 313 DICCDRIKEIPC--ITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA-DPSS 389 (409)
T ss_pred HHHHHHHhhCCC--CcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC-CHHH
Confidence 999999988742 112357899999998652 2 356677788999999982 999986 8899
Q ss_pred HHHHHHHHHHHHHhh
Q 013839 409 VNYLANAIHEVTRSE 423 (435)
Q Consensus 409 i~~~~~~l~~~l~~~ 423 (435)
+++++++|++++...
T Consensus 390 l~eal~rl~~~~~~~ 404 (409)
T PLN02656 390 LEEALGRIKSFYLRH 404 (409)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988643
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=371.76 Aligned_cols=342 Identities=14% Similarity=0.111 Sum_probs=271.6
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccCC-CeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV-VKEG-RSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~v~~~~t~ 124 (435)
..++++|+|+.|+| +. +++ +.+.+++.+.... ..+|++..|.++||+++++++...++.+ ++++ +|+ +|+
T Consensus 26 ~~~~~~i~l~~~~p-~~---~~~-~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~--it~ 97 (396)
T PRK09147 26 PADLPPISLSIGEP-KH---PTP-AFIKDALAANLDG-LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVL--PVN 97 (396)
T ss_pred ccCCCeEecCCCCC-CC---CCC-HHHHHHHHHHhhh-hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEE--ECC
Confidence 34689999999996 32 223 4444444443333 5779999999999999999985433333 4464 888 899
Q ss_pred CchhHHHHHHHHHHHhCC---CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 125 SGTGACRLFAEFQRRFHP---ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
|+++++.++ +.+++++ ||.|++++|+|..+...++..|++++.+|+.++++|++|++.+++.+. ++++++++
T Consensus 98 G~~~al~~~--~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~---~~~k~i~l 172 (396)
T PRK09147 98 GSREALFAF--AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW---ARTQLLFV 172 (396)
T ss_pred ChHHHHHHH--HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh---hccEEEEE
Confidence 999999888 7777889 899999999999999999999999999998544568999999998876 57899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh----hcCCeEEEEecccccccccCC
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL----EDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~s~SK~~g~~G~ 277 (435)
+|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.......+.... +..+++|+++||||.++++|+
T Consensus 173 ~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~Gl 252 (396)
T PRK09147 173 CSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGL 252 (396)
T ss_pred cCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccc
Confidence 9999999999999999999999999999999999999998764111111121111 124689999999999999999
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
|+||+++ +++ +++.+.+.......+++.+.|.++...+... +++++.++.++++++.+.+.|+..
T Consensus 253 RiG~~~~---~~~----l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~- 317 (396)
T PRK09147 253 RSGFVAG---DAA----LLKKFLLYRTYHGCAMPPAVQAASIAAWNDE-------AHVRENRALYREKFDAVTPILAPV- 317 (396)
T ss_pred eeeeecC---CHH----HHHHHHHHhhhcccCCCHHHHHHHHHHhcch-------hHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999964 788 7777777665455678888998887777543 678888999999999999999874
Q ss_pred CCCCccccccCcceeEecCCC---HHHHHHHhhhccEEEeCC--------------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 358 SSLNWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQD--------------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pg--------------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+.+..+++|+|+|+.+. .+++..+++++||.+.|| + ||+++. +++++++++++|++
T Consensus 318 ----~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l~rl~~ 392 (396)
T PRK09147 318 ----LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAAERIVD 392 (396)
T ss_pred ----cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 23567899999999862 445577777789999875 1 999987 78889999999988
Q ss_pred HHH
Q 013839 419 VTR 421 (435)
Q Consensus 419 ~l~ 421 (435)
+++
T Consensus 393 ~~~ 395 (396)
T PRK09147 393 FCR 395 (396)
T ss_pred Hhc
Confidence 763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=372.03 Aligned_cols=341 Identities=13% Similarity=0.136 Sum_probs=275.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~ 128 (435)
++.|+|+.|+| +. +.+....+.+.+.+... ..+|++..|.+++|+++++++....+..+.++ +|. +|+|+++
T Consensus 20 ~~~i~l~~~~~-~~---~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~--~t~G~~~ 92 (378)
T PRK07682 20 EGVISLGVGEP-DF---VTPWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEII--VTVGASQ 92 (378)
T ss_pred CCeEEeCCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEE--EeCChHH
Confidence 57899999996 32 22323333333333333 56699999999999999999953322333454 788 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
|+.++ +.+++++||+|++++|+|+.+...++..|.+++.++...++++++|++++++++. ++++++++++|||||
T Consensus 93 al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPt 167 (378)
T PRK07682 93 ALDVA--MRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT---AKTKAILLCSPNNPT 167 (378)
T ss_pred HHHHH--HHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC---cccEEEEEECCCCCc
Confidence 99988 6777899999999999999999999999999999987433468999999999886 568899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++|++|++++|+||+|.++.+++. ..++..+.+..+++++++||||.|+++|+|+||+++ +
T Consensus 168 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~---~ 241 (378)
T PRK07682 168 GAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA---YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAA---P 241 (378)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC---CCChhhcccccCCEEEEecCcccccChhhhhhhhhc---C
Confidence 9999999999999999999999999999999998641 223334444457899999999999999999999974 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+.......+++.+.|.++..+|.+.. .++++.++.++++++.+.+.|++++ +.+..++
T Consensus 242 ~~----~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~p~ 307 (378)
T PRK07682 242 VY----FSEAMLKIHQYSMMCAPTMAQFAALEALRAGN------DDVIRMRDSYRKRRNFFVTSFNEIG----LTCHVPG 307 (378)
T ss_pred HH----HHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHHCC----CccCCCC
Confidence 88 88888776665566788999999999997653 5578889999999999999999886 4577889
Q ss_pred cceeEecCC-----CH-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 369 LGMFCFSGL-----TP-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 ~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+|+|+|+.+ +. ++...+++++||.+.||. |||++. +++++++++++|++++++.
T Consensus 308 g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 308 GAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred eeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 999999843 33 355677767899999861 999987 7899999999999988653
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=372.39 Aligned_cols=347 Identities=14% Similarity=0.154 Sum_probs=275.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.+++.|+|+.|+| +. +.+...++.+.+.+......+|+++.|.++||+++++++....+..+.++ +|+ +|+|+
T Consensus 28 ~~~~~i~l~~~~p-~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~--it~G~ 101 (405)
T PRK09148 28 AGADIIDLGMGNP-DL---PTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVV--ATLGS 101 (405)
T ss_pred cCCCeEEcCCCCC-CC---CCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE--EcCCh
Confidence 4578899999996 32 33444555544444333456799999999999999999943322334466 788 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++.++.++ ++++++.+....++++++++++|||
T Consensus 102 ~~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~---~~~l~~~~~~~~~~~~~v~l~~P~N 176 (405)
T PRK09148 102 KEGFANM--AQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEF---FPALERAVRHSIPKPIALIVNYPSN 176 (405)
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCC---ccCHHHHHhhccccceEEEEeCCCC
Confidence 9999998 6777899999999999999999999999999999998433223 4555555543335789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++|+++||+||+|.++.+++ ...+++..+....+++++++||||.+|+||+|+||+++
T Consensus 177 PtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~--~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-- 252 (405)
T PRK09148 177 PTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG--NPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-- 252 (405)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCC--CCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC--
Confidence 99999999999999999999999999999999988753 12223433433346789999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.+.+.....+++.+.|.++..+|.+.. ++++..++.++++++.+.+.|+.++ +.+..
T Consensus 253 -~~~----~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~------~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~ 317 (405)
T PRK09148 253 -NER----LIAALTRVKSYLDYGAFTPIQVAATAALNGPQ------DCIAEMRELYKKRRDVLVESFGRAG----WDIPP 317 (405)
T ss_pred -CHH----HHHHHHHHHHHhccCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHcC----CccCC
Confidence 888 88888887766666788899999999997643 6788899999999999999999876 45667
Q ss_pred cCcceeEecCCC--------HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 367 NQLGMFCFSGLT--------PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 367 ~~~g~~~~~~~~--------~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+++|+|+|+.+. .++...+++++||.+.||. ||+++. +.+++.+++++|.+++++..+
T Consensus 318 p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~-~~~~l~~al~~l~~~l~~~~~ 393 (405)
T PRK09148 318 PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVE-NEQRIRQAARNIKRFLSSADE 393 (405)
T ss_pred CCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHHHH
Confidence 899999999652 3455677777999999971 999974 889999999999999976654
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=371.82 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=278.9
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCCcccHHHHHHHHHh
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
.++++..+.. ++..+.+.. ..++.|+|+.|.| +. +++ +.+.+++.+ +..+ ..+|+|+.|.++||++++++
T Consensus 8 ~~~~~~~~~~-~~~~~~~~~--~~~~~i~l~~g~p-~~---~~~-~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~ 78 (384)
T PRK12414 8 RSKLPDVGTT-IFTVIGQLA--AQHDALNLSQGAP-NF---APD-PALVEGVARAMRDG-HNQYAPMAGIAALREALAEK 78 (384)
T ss_pred HHhcccCCcc-HHHHHHHHH--HhCCeEEcCCCCC-CC---CCC-HHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHH
Confidence 4445555543 444444433 3467999999996 32 333 333444443 3333 46799999999999999999
Q ss_pred HcCCCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChH
Q 013839 105 VYGKDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 105 l~~~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 183 (435)
+....+...++ +++. +|+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++ +++++.+|++
T Consensus 79 l~~~~g~~~~~~~~i~--it~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~ 153 (384)
T PRK12414 79 TERLYGARYDPASEVT--VIASASEGLYAA--ISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL-SPEDFRVNWD 153 (384)
T ss_pred HHHHhCCCCCCCCcEE--EECChHHHHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEec-CccccccCHH
Confidence 73322222223 5788 899999999888 6777899999999999999999999999999999998 3456789999
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
.+++.+. ++++++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++. ...++..+.+..+++|
T Consensus 154 ~l~~~l~---~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~~~~~i 228 (384)
T PRK12414 154 EVAAAIT---PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA--RHHSMARHRELAERSV 228 (384)
T ss_pred HHHhhcC---cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC--CccCcccCcCccCcEE
Confidence 9999887 5788999999999999999999999999999999999999999999888642 2223333333456899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++||||.||++|+|+||+++ +++ +++.+.+.......+++.+.|.++..+|.++. +..+.++.++
T Consensus 229 ~~~SfSK~~~~pGlRiG~~v~---~~~----l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~-------~~~~~~~~~~ 294 (384)
T PRK12414 229 IVSSFGKSYHVTGWRVGYCLA---PAE----LMDEIRKVHQFMVFSADTPMQHAFAEALAEPA-------SYLGLGAFYQ 294 (384)
T ss_pred EEecccccccCccceEEEEec---CHH----HHHHHHHHHhheecCCCcHHHHHHHHHhcCCh-------HHHHHHHHHH
Confidence 999999999999999999974 788 88888887766667889999999999998753 2335678899
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------CHHHHHHHhhhccEEEeCCC------------cEEeccC
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------TPYQVDRLAKEFHIYMTQDG------------RISMAGV 404 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pgg------------Ris~~~~ 404 (435)
++++.+.+.|++.+ +.+.++++|||+|+.+ +.+++..+++++||.+.||. ||+++.
T Consensus 295 ~~r~~l~~~L~~~g----~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~- 369 (384)
T PRK12414 295 RKRDLLARELAGSR----FELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK- 369 (384)
T ss_pred HHHHHHHHHHHhCC----CeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-
Confidence 99999999999876 5677889999999743 34566677788999999861 999987
Q ss_pred CCCcHHHHHHHHHH
Q 013839 405 TTGNVNYLANAIHE 418 (435)
Q Consensus 405 ~~e~i~~~~~~l~~ 418 (435)
+++++++++++|++
T Consensus 370 ~~~~~~~~~~rl~~ 383 (384)
T PRK12414 370 DDATLVEGARRLCS 383 (384)
T ss_pred CHHHHHHHHHHHhh
Confidence 78889999998865
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=371.04 Aligned_cols=340 Identities=14% Similarity=0.135 Sum_probs=270.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.+++.|+|+.|+| +. +.+...++.+...+.......|+++.|.++||+++++++....+.+++++ +++ +|+|+
T Consensus 33 ~g~~~i~l~~g~p-~~---~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~--vt~G~ 106 (394)
T PRK05942 33 QGLDLIDLGMGNP-DG---AAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEAL--PLLGS 106 (394)
T ss_pred cCCCeEEcCCCCC-CC---CCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEE--EccCh
Confidence 4567999999986 32 33445666666665444356799999999999999999853323334466 477 79999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +.+++.+||+|++++|+|+.+...+...|++++.+++..+++|++|++++++.+. ++++++++++|||
T Consensus 107 ~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~N 181 (394)
T PRK05942 107 KEGLTHL--ALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPSN 181 (394)
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCCC
Confidence 9999988 6677899999999999999999888999999999998434467899999999886 6789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+.+..+++++++||||.||++|+|+||+++
T Consensus 182 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~-- 257 (394)
T PRK05942 182 PTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY--QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG-- 257 (394)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCCChhhCCCccccEEEEecchhccCChhhheeeeec--
Confidence 999999999999999999999999999999999987542 2233433433345789999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.++........+.+.++|.++..+|... .+++++.+++++++++.+.+.|+..+ +.+..
T Consensus 258 -~~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~ 322 (394)
T PRK05942 258 -NRH----IIQGLRTLKTNLDYGIFSALQKAAETALQLP------DSYLQQVQERYRTRRDFLIQGLGELG----WNIPP 322 (394)
T ss_pred -CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHHHCC----CeecC
Confidence 888 8888887666555678889999999998753 26788899999999999999998876 45677
Q ss_pred cCcceeEecCC----C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL----T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 367 ~~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+++|+|+|+.+ + .+++.++++++||.+.||. |++++. +.+.+.+++++|++
T Consensus 323 ~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~ 388 (394)
T PRK05942 323 TKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQ 388 (394)
T ss_pred CCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 89999999865 2 3455667788999998861 999964 55556666665543
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=369.81 Aligned_cols=340 Identities=16% Similarity=0.126 Sum_probs=270.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.++++++|+.|+| +. ..++...+.+...+.......|+++.|.++||+++++++....+.+.+++ +|+ +|+|+
T Consensus 27 ~~~~~~~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi--~t~G~ 100 (383)
T TIGR03540 27 EGVDVISLGIGDP-DL---PTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVL--SLIGS 100 (383)
T ss_pred cCCCeEEeCCCCC-CC---CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEE--ECCCc
Confidence 4678999999996 32 33333333333333333356799999999999999999853333333354 577 78999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+|+.+++++.+|++++++.+. ++++++++++|||
T Consensus 101 ~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~i~~P~N 175 (383)
T TIGR03540 101 KEGIAHI--PLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYPNN 175 (383)
T ss_pred HHHHHHH--HHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc---ccceEEEEeCCCC
Confidence 9999998 6777899999999999999999999999999999998434457789999998886 5789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++|++++|+||+|.++.+++. ...++..+....+++++++||||.||++|+|+||+++
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~-- 251 (383)
T TIGR03540 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY--KAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG-- 251 (383)
T ss_pred CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC--CCcCcccCCCcccCEEEEEecccccCCccceeeEEeC--
Confidence 999999999999999999999999999999999887541 2233333322346789999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.+.|.++..++.+.. +++++.++.++++++.+.+.|++.+ +.+..
T Consensus 252 -~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~ 316 (383)
T TIGR03540 252 -NAD----LIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQ------DVVKEIRKIYQRRRDLLLEALKKIG----IDVEK 316 (383)
T ss_pred -CHH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHhCC----CEecC
Confidence 888 77777776655556778889999999997653 7778889999999999999999886 56778
Q ss_pred cCcceeEecCC----C-HHHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL----T-PYQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 367 ~~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+++|+|+|+.+ + .+++..+++++||.+.|| + ||+++. +++++.+++++|++
T Consensus 317 ~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 317 PKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 88999999865 2 345577777789999987 1 999975 77778888877754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=370.83 Aligned_cols=339 Identities=16% Similarity=0.118 Sum_probs=269.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~g 125 (435)
.++++++|+.|+| +. .+++ .+.+++.. +.......|++..|.++||+++++++....+..++++ +|+ +|+|
T Consensus 29 ~~~~~i~l~~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii--~t~G 101 (385)
T PRK09276 29 RGVDVISLGIGDP-DL---PTPD-HIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVI--SLIG 101 (385)
T ss_pred cCCCEEEecCCCC-CC---CCCH-HHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEE--EccC
Confidence 5578999999996 32 2333 33434433 3333346799999999999999999953323333455 577 7899
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+++.+++++.+|++++++.+. ++++++++++||
T Consensus 102 ~~~~i~~~--~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~ 176 (385)
T PRK09276 102 SKEGIAHI--PLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPN 176 (385)
T ss_pred cHHHHHHH--HHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCC
Confidence 99999988 6667899999999999999999999999999999998434457789999988876 578999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+....+++|+++||||.||++|+|+||+++
T Consensus 177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~- 253 (385)
T PRK09276 177 NPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY--KPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVG- 253 (385)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC--CCCChhccCCCcCCEEEEecchhhcCCcchhheeeeC-
Confidence 9999999999999999999999999999999999887531 2233433433346789999999999999999999974
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+.+.......+.+.+.|.++..++.+. ..++++.+++++++++.+.+.|++.+ +.+.
T Consensus 254 --~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~ 317 (385)
T PRK09276 254 --NAD----LIAGLGKVKSNVDSGVFQAIQEAGIAALNGP------QEVVEELRKIYQERRDILVEGLRKLG----LEVE 317 (385)
T ss_pred --CHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHHhCC----Cccc
Confidence 888 7787877665555667778899998998753 26778889999999999999999875 4567
Q ss_pred ccCcceeEecCC----CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 366 ~~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
.+++|+|+|+.+ +. +++..+++++||.+.|| + ||+++. +++++.+++++|++
T Consensus 318 ~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 318 PPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 788999999975 33 44577777789999997 1 999975 77888888888764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=371.52 Aligned_cols=345 Identities=12% Similarity=0.103 Sum_probs=280.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++++|+.|.| +. +. ++.+.+++..........|+++.|.++||+++++++....+..+.+++|+ +|+|++
T Consensus 31 ~~~~~i~l~~g~p-~~---~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~--~t~G~~ 103 (402)
T PRK06107 31 AGRSIVDLTVGEP-DF---DT-PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEIT--VGGGAK 103 (402)
T ss_pred ccCCEEEcCCCCC-CC---CC-CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEE--EeCCHH
Confidence 4578999999996 32 22 33344444444322246699999999999999999843333344578998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++++||+|++++|+|..|...+...+.+++.+++..++++.+|++.+++.+. ++++++++++|+||
T Consensus 104 ~al~~~--~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP 178 (402)
T PRK06107 104 QAIFLA--LMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSNP 178 (402)
T ss_pred HHHHHH--HHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCCC
Confidence 999988 6667889999999999999999888888888888887334457899999999886 57888999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 208 TGVDPTEEQWREISYQFKVK-GHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~-~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||.+++.+++++|+++|++| ++++|+||+|.++.+++. ..+++... .+..+++++++||||.|+++|+|+||+++
T Consensus 179 tG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~--~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~- 255 (402)
T PRK06107 179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE--PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG- 255 (402)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC--CCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec-
Confidence 99999999999999999998 999999999999887542 22333333 23356899999999999999999999974
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+.........+++.++|.++..+|.... .+++..++.++++++.+.+.|++++. +.+.
T Consensus 256 --~~~----~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~g---~~~~ 320 (402)
T PRK06107 256 --PAD----LIAAINKLQSQSSSCPSSISQAAAAAALNGDQ------SFVTESVAVYKQRRDYALALLNAIPG---LSCL 320 (402)
T ss_pred --CHH----HHHHHHHHHHhcccCCChHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHHHHHHhcCCC---Cccc
Confidence 888 88888887776677899999999999997543 67888899999999999999988632 5677
Q ss_pred ccCcceeEecCC---------------C-HHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL---------------T-PYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~---------------~-~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++++|+|+|+.+ + .+++..+++++||.+.||. ||+|+. +++++++++++|+++++
T Consensus 321 ~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~-~~e~l~~~l~~l~~~l~ 399 (402)
T PRK06107 321 VPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT-SLETLEEACARIERAVA 399 (402)
T ss_pred CCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHHHHHHHHHHHH
Confidence 899999999864 2 2456778888999999982 999987 88999999999999886
Q ss_pred hh
Q 013839 422 SE 423 (435)
Q Consensus 422 ~~ 423 (435)
++
T Consensus 400 ~~ 401 (402)
T PRK06107 400 AL 401 (402)
T ss_pred hc
Confidence 54
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=368.41 Aligned_cols=334 Identities=15% Similarity=0.086 Sum_probs=277.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+.++++|+.|+| ++ +.+... .++..++... ..+|++..|.++||++|++++.+. ++++|+ +|+|++
T Consensus 24 ~~~~~~~~~~~e~-~~---~~~~~~-~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~-----~~~~vi--~t~G~~ 90 (373)
T PRK07324 24 AESCIDSLTLEEL-LA---LAGKNP-EAFYQELGQK-KLTYGWIEGSPEFKEAVASLYQNV-----KPENIL--QTNGAT 90 (373)
T ss_pred ccCCCCCCcHHHH-Hh---ccCcch-HHHHHHHhcC-CccCCCCCCCHHHHHHHHHHhcCC-----ChhhEE--EcCChH
Confidence 5679999999997 54 344444 4455555444 567999999999999999998532 267888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +.+++.+||+|+++.|+|..+...++..|++++.+++..++++.+|++++++.+. ++++++++++||||
T Consensus 91 ~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~---~~~kli~i~~p~NP 165 (373)
T PRK07324 91 GANFLV--LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR---PNTKLICINNANNP 165 (373)
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC---CCCcEEEEeCCCCC
Confidence 999988 7777899999999999999999999999999999998544567899999998886 67899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.+++ ..+++ .+..+++|+++||||.+|++|+|+||+++
T Consensus 166 tG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~---~~~s~---~~~~~~~I~~~s~SK~~~~~G~RiG~i~~--- 236 (373)
T PRK07324 166 TGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG---STPSI---ADLYEKGISTNSMSKTYSLPGIRVGWIAA--- 236 (373)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC---CCCCh---hhccCCEEEEecchhhcCCccceeEEEec---
Confidence 9999999999999999999999999999999988753 12222 23346789999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+++.+.....+++.++|.++..+|.+. +.+++..++.++++++.+.+.|++.+ .+.+..|
T Consensus 237 ~~~----li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~------~~~l~~~~~~~~~~~~~l~~~l~~~~---~~~~~~p 303 (373)
T PRK07324 237 NEE----VIDILRKYRDYTMICAGVFDDMLASLALEHR------DAILERNRKIVRTNLAILDEWVAKEP---RVSYVKP 303 (373)
T ss_pred CHH----HHHHHHHHhCcEEecCChHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHhcCC---CceEECC
Confidence 888 8888988877667788899999998888754 36788889999999999999998764 2566778
Q ss_pred CcceeEecCC----C-HHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 368 QLGMFCFSGL----T-PYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 368 ~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++|+|.|+.+ + .+++.++++++||.+.||. ||+++. +++.+.+++++|++++++
T Consensus 304 ~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~-~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 304 KAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC-DTETLKKGLKKLSEFLRE 370 (373)
T ss_pred CceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 8888777744 3 4566888888999999983 999987 788999999999998864
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=367.23 Aligned_cols=341 Identities=16% Similarity=0.115 Sum_probs=275.1
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCch
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGT 127 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~ 127 (435)
.+.+|+|+.|.| +. +.|+..++.+...+..+ ..+|++..|.++||+++++++....+..++++ +|+ +|+|++
T Consensus 25 ~~~~i~l~~g~p-~~---~~p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~--~t~G~~ 97 (387)
T PRK08912 25 EHGAINLGQGFP-DD---PGPEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVM--VTSGAT 97 (387)
T ss_pred hCCeEEccCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEE--EeCCcH
Confidence 367999999997 33 34555666555555444 46799999999999999999843333334566 888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..++.+||+|++++|+|+.+...++..|++++.+++ +++++++|++++++.+. ++++++++++||||
T Consensus 98 ~al~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP 171 (387)
T PRK08912 98 EALAAA--LLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL-EPPHWRLPRAALAAAFS---PRTKAVLLNNPLNP 171 (387)
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccCcCCHHHHHHHhC---ccceEEEEeCCCCC
Confidence 999887 6777889999999999999999999999999999988 34568999999999886 57789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++|++++|+||+|.++.+++. ...++....+..+++++++|+||.||++|+|+||+++
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~--- 246 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR--RHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCA--- 246 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC--CCcChhhCCCccCceEEEeechhhccCcCceeEEEec---
Confidence 99999999999999999999999999999999887641 2223333333356899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.......+.+...|.++..++.... ++.++.+++++++++.+.+.|+.+| +.+.++
T Consensus 247 ~~~----~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 312 (387)
T PRK08912 247 APP----LLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPD------DYFEGMRADLARSRDRLAAGLRRIG----FPVLPS 312 (387)
T ss_pred CHH----HHHHHHHHHhhccccCChHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHhCC----CcccCC
Confidence 778 77777776655445667777888888775432 6677889999999999999999886 457778
Q ss_pred CcceeEecCCC-------H-HHHHHHhhhccEEEeCCC------------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 368 QLGMFCFSGLT-------P-YQVDRLAKEFHIYMTQDG------------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 368 ~~g~~~~~~~~-------~-~~~~~ll~~~gI~i~pgg------------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++|+|+|+.+. . +++..+++++||.+.||. ||+++. +++++++++++|++++++
T Consensus 313 ~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 313 QGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAARRR 386 (387)
T ss_pred CcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 89999998652 2 345666777899999861 999987 788899999999987753
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=368.61 Aligned_cols=365 Identities=14% Similarity=0.119 Sum_probs=282.2
Q ss_pred CchhhHHHHHhcC--CCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCCcccHHHHHHHHHhHcCCCCc
Q 013839 35 DPINGVTEAFLAD--PSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISASVSTKMVEESVKLVYGKDSD 111 (435)
Q Consensus 35 ~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~ 111 (435)
+++.+..+..+.+ +++++|+|+.|.|..++..+ +.+.+.+++.. +.......|.+..|.++||+++++++... +.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~ 91 (401)
T TIGR01264 14 NPIRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DG 91 (401)
T ss_pred hHHHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CC
Confidence 3344555555443 34688999999973222223 34444444444 33333456999999999999999999643 33
Q ss_pred cccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc
Q 013839 112 VVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN 191 (435)
Q Consensus 112 ~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~ 191 (435)
.+.+++|+ +|+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++..++++++|++.+++.+.
T Consensus 92 ~~~~~~i~--~t~G~~~al~~~--~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~- 166 (401)
T TIGR01264 92 PIEADDVV--LCSGCSHAIEMC--IAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID- 166 (401)
T ss_pred CCCHHHEE--ECcChHHHHHHH--HHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc-
Confidence 46688998 999999999888 6677889999999999999999999999999999987434468999999998886
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
.+++++++++||||||.+++.+++++|+++|++++++||+||+|.+|.+++. ...++..+.. ..++|+++||||.
T Consensus 167 --~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~-~~~vi~~~SfSK~ 241 (401)
T TIGR01264 167 --EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA--TFEPLASLSS-TVPILSCGGLAKR 241 (401)
T ss_pred --cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--ccccHHHcCC-CCcEEEEccCccc
Confidence 5678999999999999999999999999999999999999999999987641 2334444322 2369999999999
Q ss_pred ccccCCcccEEEEEecC-hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVD-SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
|+++|+|+||+++ ++ ......+++.+++... ...+++.+.|.++..+|.+. .++++++.+++++++++.+.
T Consensus 242 ~~~~GlRiG~iv~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~-----~~~~l~~~~~~~~~~r~~l~ 313 (401)
T TIGR01264 242 WLVPGWRLGWIII--HDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT-----PQEYFDGTLSVLESNAMLCY 313 (401)
T ss_pred CCCccceEEEEEe--cCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999974 22 2223336666665433 34567889999999999652 13678889999999999999
Q ss_pred HHHHhhCCCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHH
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYL 412 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~ 412 (435)
+.|++++ ++.+..|++|+|+|+.+. .+++..+++++||.+.||. ||+++. ++++++++
T Consensus 314 ~~L~~~~---~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~-~~~~l~~~ 389 (401)
T TIGR01264 314 GALAAVP---GLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV-PVVMMEEA 389 (401)
T ss_pred HHHHhCC---CCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC-CHHHHHHH
Confidence 9999873 256677899999999742 3455777777999999873 999986 78999999
Q ss_pred HHHHHHHHHhh
Q 013839 413 ANAIHEVTRSE 423 (435)
Q Consensus 413 ~~~l~~~l~~~ 423 (435)
+++|+++++++
T Consensus 390 l~rl~~~~~~~ 400 (401)
T TIGR01264 390 CSRIQEFCERH 400 (401)
T ss_pred HHHHHHHHhcc
Confidence 99999988653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=366.10 Aligned_cols=343 Identities=13% Similarity=0.081 Sum_probs=273.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccCC-CeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV-VKEG-RSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~v~~~~t~g 125 (435)
++.++|+|++|+| +. .+++.........+.......|++ .|.++||+++++++....+.. ++++ +|. +|+|
T Consensus 42 ~~~~~i~L~~g~p-~~---~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~--it~G 114 (410)
T PRK06290 42 PDMELIDMGVGEP-DE---MADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVI--HSIG 114 (410)
T ss_pred CCCCeEEcCCCCC-CC---CCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEE--EccC
Confidence 4567999999996 32 233333333333333333456875 899999999999985433333 4465 798 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+++++.++ +.+++.+||+|++++|+|+.+...++..|++++.+++.++.++.+|++.+++++. .+++++++++||
T Consensus 115 s~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~ 189 (410)
T PRK06290 115 SKPALAML--PSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK---EKAKLLYLNYPN 189 (410)
T ss_pred HHHHHHHH--HHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc---ccceEEEEECCC
Confidence 99999888 6777899999999999999999999999999999998434457889999998886 578999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++..+.+..+++|+++||||.+|++|+|+||+++
T Consensus 190 NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~---~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~- 265 (410)
T PRK06290 190 NPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK---PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG- 265 (410)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC---CcChhcCCCccccEEEEeechhhcCCchhheEeEEe-
Confidence 9999999999999999999999999999999999987531 223333333456789999999999999999999974
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+.+.......+.+.++|.++..+|.+. +++++.+++++++++.+.+.|+++| +.+.
T Consensus 266 --~~~----l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~ 328 (410)
T PRK06290 266 --NEL----IVKAFATVKDNNDSGQFIAIQKAGIYALDHP-------EITEKIREKYSRRLDKLVKILNEVG----FKAE 328 (410)
T ss_pred --CHH----HHHHHHHHHhccccCCcHHHHHHHHHHhhCc-------HHHHHHHHHHHHHHHHHHHHHHhCC----Ceec
Confidence 888 8888887776666677788999999999874 4567888999999999999999886 4577
Q ss_pred ccCcceeEecCCC-----------H-HHHHHHhhhccEEEeCCC------cEEecc--CCCCcHHHHHHHHHHHHHhh
Q 013839 366 TNQLGMFCFSGLT-----------P-YQVDRLAKEFHIYMTQDG------RISMAG--VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 366 ~~~~g~~~~~~~~-----------~-~~~~~ll~~~gI~i~pgg------Ris~~~--~~~e~i~~~~~~l~~~l~~~ 423 (435)
++++|||+|+.+. . ++.+.|+++.+|.+.||. ||+++. .++++.++++++|++.|..+
T Consensus 329 ~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 329 MPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred CCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 8899999998552 2 455777776678887862 999973 26788899999999888654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=366.41 Aligned_cols=340 Identities=17% Similarity=0.188 Sum_probs=272.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++++|+.|.| +. +++..+.+...+.+..+ ...|.+..|.+++|+++++++....+..+++++|. +|+|++
T Consensus 30 ~~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--it~G~~ 102 (387)
T PRK08960 30 AGHDVIHLEIGEP-DF---TTAEPIVAAGQAALAAG-HTRYTAARGLPALREAIAGFYAQRYGVDVDPERIL--VTPGGS 102 (387)
T ss_pred cCCCeEEeCCCCC-CC---CCCHHHHHHHHHHHhcC-CCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEE--EccCcH
Confidence 4578999999996 32 33444444444444333 45699999999999999999853333345588999 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..++.+||+|++++|+|+.+...++..|.+++.+++..+.++.+|++++++.++ ++++++++++||||
T Consensus 103 ~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NP 177 (387)
T PRK08960 103 GALLLA--SSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN---ADTVGALVASPANP 177 (387)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC---ccceEEEEECCCCC
Confidence 999998 6667899999999999999999999999999999998433457899999999887 56788899999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++|++++|+||+|.++.+++. ..++. ...+++++++||||.+|++|+|+||+++
T Consensus 178 tG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~---~~~~~---~~~~~vi~~~S~SK~~g~~GlRiG~~~~--- 248 (387)
T PRK08960 178 TGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD---AASVL---EVDDDAFVLNSFSKYFGMTGWRLGWLVA--- 248 (387)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCChh---hccCCEEEEeecccccCCcccEEEEEEc---
Confidence 99999999999999999999999999999999887531 22222 2346899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.......+++.+.|.++..++.+. +.+++++.++.++++++.+.+.|+.++.. .+..+
T Consensus 249 ~~~----~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-----~~~~l~~~~~~~~~~~~~l~~~L~~~~~~---~~~~p 316 (387)
T PRK08960 249 PPA----AVPELEKLAQNLYISASTPAQHAALACFEPE-----TLAILEARRAEFARRRDFLLPALRELGFG---IAVEP 316 (387)
T ss_pred CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-----cHHHHHHHHHHHHHHHHHHHHHHHhcCCc---CCcCC
Confidence 788 8888888776666778999999998888643 23678889999999999999999987631 12457
Q ss_pred CcceeEecCC-----CH-HHHHHHhhhccEEEeCC---C--------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQD---G--------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pg---g--------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++|+|+|+.+ +. +++..+++++||.+.|| + ||+++. +.+++..++++|+++++
T Consensus 317 ~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 317 QGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGLR 386 (387)
T ss_pred CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 8999999865 32 34566777789999987 1 999986 67788888888877664
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=369.38 Aligned_cols=349 Identities=15% Similarity=0.175 Sum_probs=293.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CCC-CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GSE-FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
..+..++|+.|.| +. ...|...++++..... ... ..+|.++.|.++||++|++++....+....+++|+ +|
T Consensus 87 ~~~~~i~f~~g~p-~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Ii--iT 161 (459)
T COG1167 87 DDPSVIDFAGGLP-DP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIV--IT 161 (459)
T ss_pred CCCceecCCCCCC-Cc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEE--Ee
Confidence 3489999999997 32 2667777777766654 222 46799999999999999999963344445588999 99
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+|+++|+.++ +..+++|||+|++++|+|.+...+++.+|++++.||+ |+ .|+|+|.|++.+.+. +...++++++
T Consensus 162 ~G~q~al~l~--~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~-d~--~G~~~e~le~~~~~~-~~k~~y~~P~ 235 (459)
T COG1167 162 SGAQQALDLL--LRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPV-DE--DGIDPEALEEALAQW-KPKAVYVTPT 235 (459)
T ss_pred CCHHHHHHHH--HHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCC-CC--CCCCHHHHHHHHhhc-CCcEEEECCC
Confidence 9999999988 6667889999999999999999999999999999998 33 389999999999865 2446778899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
.|||||.++|.+++++|+++|++|+++||+||.|.+|.+++. ..+++..+ +..+++|+++||||++. ||+|+||++
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~--p~~~l~~l-d~~~rViy~gSFSK~l~-PglRlG~vv 311 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGP--PPPPLKAL-DAPGRVIYLGSFSKTLA-PGLRLGYVV 311 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCC--CCCChHhh-CCCCCEEEEeeehhhcc-cccceeeee
Confidence 999999999999999999999999999999999999999853 23334444 45789999999999997 999999997
Q ss_pred EEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Q 013839 284 ILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE 363 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 363 (435)
+ +++ +++.+.........+++.+.|.+++..+.++. |.++++.+++.|+++++.+.+.|.+... ..+.
T Consensus 312 ~---p~~----~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~----~~~hl~~lR~~y~~rr~~l~~~L~~~~~-~~~~ 379 (459)
T COG1167 312 A---PPE----LIEKLLRLKQAADLGPSSLSQAALAAFLLSGH----YDRHLRRLRREYARRRDALLEALAEYLP-ELAT 379 (459)
T ss_pred C---CHH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCee
Confidence 4 888 89999988888889999999999999998654 7799999999999999999999998853 3467
Q ss_pred ccccCcceeEecCC----CHH-HHHHHhhhccEEEeC-CC------------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 364 HITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQ-DG------------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 364 ~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~p-gg------------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+..|.+|+|+|+.+ +.. ++..+ .++||.+.| |- |++|+..+++++++++++|.+++++..
T Consensus 380 ~~~p~gG~flwl~l~~~~~~~~l~~~a-~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 380 WTRPEGGLFLWLELPEGIDARELLAAA-LEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred eecCCceEEEEEEcCCCCCHHHHHHHH-HHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 78899999999966 433 44555 568999998 41 999998889999999999999987654
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=366.45 Aligned_cols=364 Identities=13% Similarity=0.106 Sum_probs=282.6
Q ss_pred hHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCCcccHHHHHHHHHhHcCCC------C
Q 013839 39 GVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISASVSTKMVEESVKLVYGKD------S 110 (435)
Q Consensus 39 ~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~------~ 110 (435)
....++.. ..++++|+|+.|.| +......|++.+.+++.. +......+|+++.|.++||+++++++.... +
T Consensus 21 ~~~~~~~~~~~~~~~i~l~~g~p-~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~ 99 (412)
T PTZ00433 21 TVTDNAKPSPSPKSIIKLSVGDP-TLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLK 99 (412)
T ss_pred HHHHhhccCCCCCCeeecCCcCC-CCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc
Confidence 44445543 36689999999997 321112344455555544 333335679999999999999999985321 2
Q ss_pred ccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh
Q 013839 111 DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK 190 (435)
Q Consensus 111 ~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~ 190 (435)
..+++++|+ +|+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++..++++++|++++++.+.
T Consensus 100 ~~~~~~~i~--it~G~~~al~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 100 STIKKDNVV--LCSGVSHAILMA--LTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CCCChhhEE--EeCChHHHHHHH--HHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 345688999 999999999998 6677889999999999999999999999999999998434568999999998887
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ...++..+.. ..++++++||||
T Consensus 176 ---~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~-~~~~i~~~SfSK 249 (412)
T PTZ00433 176 ---DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA--TFTSVADFDT-TVPRVILGGTAK 249 (412)
T ss_pred ---cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC--CccchhhccC-CCceEEEccchh
Confidence 5688999999999999999999999999999999999999999999987641 2234444422 235899999999
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.+|++|+|+||+++ ..++.....+++.+.+... ...+++.+.|.++..++.+. .+.++++.+++++++++.+.
T Consensus 250 ~~~~pGlRlG~~i~-~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~-----~~~~~~~~~~~~~~~r~~l~ 322 (412)
T PTZ00433 250 NLVVPGWRLGWLLL-VDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNT-----PQEHLEQIVAKLEEGAMVLY 322 (412)
T ss_pred hcCCCCeeEEEEEE-eCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999973 2122111237777766543 33578999999999888752 13678889999999999999
Q ss_pred HHHHhhCCCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHH
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYL 412 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~ 412 (435)
+.|+... .+.+..+++|+|+|+.++ .++++.+++++||.+.||. ||+++. .+++++++
T Consensus 323 ~~L~~~~---~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~l~~a 398 (412)
T PTZ00433 323 NHIGECI---GLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR-PVEVLREA 398 (412)
T ss_pred HHHhcCC---CCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC-CHHHHHHH
Confidence 9998753 155678899999998542 3456777767899999972 999976 68889999
Q ss_pred HHHHHHHHHhhh
Q 013839 413 ANAIHEVTRSEQ 424 (435)
Q Consensus 413 ~~~l~~~l~~~~ 424 (435)
+++|+++++...
T Consensus 399 l~~l~~~~~~~~ 410 (412)
T PTZ00433 399 VERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHHhc
Confidence 999999987543
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=364.01 Aligned_cols=340 Identities=17% Similarity=0.207 Sum_probs=275.8
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCch
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGT 127 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~ 127 (435)
.+..|+|+.|.| +. +.+ +.+.++...........|++..|.++||+++++++...++..++++ +|+ +|+|++
T Consensus 27 ~~~~i~l~~~~p-~~---~~~-~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~--~t~G~~ 99 (387)
T PRK07683 27 YDNLISLTIGQP-DF---PTP-SHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEII--VTIGAS 99 (387)
T ss_pred cCCeEEecCCCC-CC---CCC-HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE--EeCChH
Confidence 467899999996 32 223 3344444444433356799999999999999999954333334466 888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++. +++++.+|.+++++.+. ++++++++++||||
T Consensus 100 ~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~---~~~~~i~i~~p~NP 173 (387)
T PRK07683 100 EAIDIA--FRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT-RSTGFRLTAEALENAIT---EKTRCVVLPYPSNP 173 (387)
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeec-CcccCCCCHHHHHHhcC---cCceEEEEeCCCCC
Confidence 999988 6667889999999999999999999999999999987 45667788899999887 56789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|+++++++|+||+|.++.+++ ...++..+.+..+++++++||||.+|+||+|+||+++
T Consensus 174 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~--- 247 (387)
T PRK07683 174 TGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ---PHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFA--- 247 (387)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC---CcCChhhccCCcCCeEEEeeccccccCccceeEEEEc---
Confidence 9999999999999999999999999999999998753 1234444444557899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.......+++.+.|.++..+|.++. .+.++.+++++++++.+.+.|++.+ +.+..+
T Consensus 248 ~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~ 313 (387)
T PRK07683 248 PSY----LAKHILKVHQYNVTCASSISQYAALEALTAGK------DDAKMMRHQYKKRRDYVYNRLISMG----LDVEKP 313 (387)
T ss_pred CHH----HHHHHHHHHHhccCCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHHcC----CcccCC
Confidence 888 77777776555556677889999999997653 5677888899999999999998875 457788
Q ss_pred CcceeEecCC-----CH-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 368 QLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 368 ~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++|+|+|+.+ +. +++..+++++||.+.||. ||+++. +++++.+++++|++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 314 TGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred CeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 9999999853 32 455677788999999972 999987 888999999999998864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=363.17 Aligned_cols=342 Identities=15% Similarity=0.167 Sum_probs=272.7
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcccc-CCCeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVK-EGRSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~v~~~~t~gg~~ 128 (435)
++.|+|+.|.| +. ..+ +.+.+++..........|++..|.++||+++++++...++..+. +++|+ +|+|+++
T Consensus 30 ~~~i~l~~~~~-~~---~~~-~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~--it~G~~~ 102 (391)
T PRK07309 30 PGILKLTLGEP-DF---TTP-DHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEIL--VTIGATE 102 (391)
T ss_pred CCeEEcCCCCC-CC---CCC-HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEE--EeCChHH
Confidence 67999999996 32 223 33444444333222456999999999999999999543333333 46888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +..++.+||+|++++|+|.++...++..|++++.++. +++++.+|++.+++++.+..++++++++++|||||
T Consensus 103 al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPt 179 (391)
T PRK07309 103 ALSAS--LTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT-TENDFVLTPEMLEKAILEQGDKLKAVILNYPANPT 179 (391)
T ss_pred HHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCC
Confidence 99998 6777889999999999999999999999999999987 45567899999999987543467899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++|++|++++|+|++|.++.+++. ...++... ..+++++++||||.||++|+|+||+++ +
T Consensus 180 G~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG~~v~---~ 252 (391)
T PRK07309 180 GVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFA---P 252 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CCCCHHHh--ccCCEEEEecChhhccCccceeEEEEe---C
Confidence 9999999999999999999999999999999998531 22233322 236899999999999999999999974 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.........+++.++|.++..+|.+.. ......+++++++++.+.+.|++.+ +.+..++
T Consensus 253 ~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~p~ 318 (391)
T PRK07309 253 AE----FTAQLIKSHQYLVTAATTMAQFAAVEALTNGK------DDALPMKKEYIKRRDYIIEKMTDLG----FKIIKPD 318 (391)
T ss_pred HH----HHHHHHHHHhhcccCCChHHHHHHHHHHhCCh------hHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCC
Confidence 88 77777765555556788899999999998753 2335677888999999999998876 4677889
Q ss_pred cceeEecCC------C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 369 LGMFCFSGL------T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 ~g~~~~~~~------~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+|+|+|+.+ + .+++.++++++||.+.||. |++++. +.+++++++++|+++++++
T Consensus 319 gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 319 GAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred eeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 999999754 2 2345677778999999872 999986 7789999999999988664
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=369.74 Aligned_cols=348 Identities=15% Similarity=0.206 Sum_probs=273.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC------------CCCCCCCCCcccHHHHHHHHHhHcCCCC--ccccC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG------------SEFLESISASVSTKMVEESVKLVYGKDS--DVVKE 115 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (435)
...|+|+.++. +.+.+.+.+....... .....|++..|.++||+++|+++....+ .++++
T Consensus 38 ~g~i~L~~~En------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~ 111 (468)
T PLN02450 38 SGIIQMGLAEN------QLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDP 111 (468)
T ss_pred CeeEEeehhHh------HhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcCh
Confidence 37999999993 3333555655554311 1234499999999999999999954322 23568
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhcC--
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKNA-- 192 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-- 192 (435)
++|+ +|+|+++++.++ +.++++|||.|++++|+|+.|...+. ..|++++++++.+++++.+|++.+++++.+.
T Consensus 112 ~~Ii--it~Ga~~al~~l--~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~ 187 (468)
T PLN02450 112 NKLV--LTAGATSANETL--MFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQK 187 (468)
T ss_pred HHeE--EccChHHHHHHH--HHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHh
Confidence 8998 999999999888 77788999999999999999988887 5899999999844567888999999888642
Q ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh--------hcCCeEE
Q 013839 193 -PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL--------EDEHLIG 263 (435)
Q Consensus 193 -~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~--------~~~~~~i 263 (435)
..++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ...++.... +..++++
T Consensus 188 ~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~--~~~s~l~~~~~~~~~~~~~~~~vi 265 (468)
T PLN02450 188 LNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP--GFVSVMEVLKDRKLENTDVSNRVH 265 (468)
T ss_pred cCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC--CcccHHHHhhhcccccCCCCCcEE
Confidence 23678999999999999999999999999999999999999999999887642 122222221 1256899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++||||.|+++|+|+||++ +.++. ++..+.+.. ....++.++|.++..+|.++.+.+ +++++.+++++
T Consensus 266 ~l~S~SK~~~l~GlRiG~li--~~~~~----l~~~~~~~~--~~~~~s~~~Q~a~~~~L~~~~~~~---~~l~~~~~~l~ 334 (468)
T PLN02450 266 IVYSLSKDLGLPGFRVGAIY--SNDEM----VVSAATKMS--SFGLVSSQTQYLLSALLSDKKFTK---NYLEENQKRLK 334 (468)
T ss_pred EEEeccccCCCCCccEEEEE--ECCHH----HHHHHHHHh--hcCCCCHHHHHHHHHHhCCchhHH---HHHHHHHHHHH
Confidence 99999999999999999996 43344 455555543 234578899999999998864211 35778889999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCCC-----------HHHHHHHhhhccEEEeCCC----------cEEec
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT-----------PYQVDRLAKEFHIYMTQDG----------RISMA 402 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gI~i~pgg----------Ris~~ 402 (435)
++++.+.+.|+++| +.+.++++|+|+|+.+. .++..++++++||.+.||. ||+|+
T Consensus 335 ~rr~~l~~~L~~~g----i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~ 410 (468)
T PLN02450 335 QRQKKLVSGLEAAG----IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFA 410 (468)
T ss_pred HHHHHHHHHHHHcC----CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEec
Confidence 99999999999886 45778999999999763 1245667777899999982 99998
Q ss_pred cCCCCcHHHHHHHHHHHHHhhh
Q 013839 403 GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 403 ~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
..+++++++++++|++++++..
T Consensus 411 ~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 411 NMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHhcc
Confidence 6678999999999999997655
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=361.99 Aligned_cols=344 Identities=17% Similarity=0.169 Sum_probs=274.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcccc-CCCeeeEecCCch
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISASVSTKMVEESVKLVYGKDSDVVK-EGRSAGVQALSGT 127 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~v~~~~t~gg~ 127 (435)
++.++|+.|.| +. +++.. +.+++.+ +.......|++..|.+++|+++++++....+.... +++++ +++|++
T Consensus 27 ~~~~~l~~g~~-~~---~~~~~-~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~--~t~G~~ 99 (389)
T PRK05957 27 PGTISLGQGVV-SY---PPPPE-AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIV--VTAGSN 99 (389)
T ss_pred CCeEEccCCCC-CC---CCCHH-HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEE--EeCChH
Confidence 57899999996 32 33333 3444443 33333457999999999999999998433232233 56788 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++..+ +..++.+||+|++++|+|..+...++..|++++.++. ++++++|++++++.++ ++++++++++||||
T Consensus 100 ~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~---~~~klv~~~~p~NP 172 (389)
T PRK05957 100 MAFMNA--ILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAIT---PKTRAIVTISPNNP 172 (389)
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec--CCCCCcCHHHHHHhcC---cCceEEEEeCCCCC
Confidence 999887 6666889999999999999998888999999999987 3567899999999987 57899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...+.....+...++|+++||||.+|++|+|+||+++
T Consensus 173 tG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~--- 247 (389)
T PRK05957 173 TGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVI--- 247 (389)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCCccCcEEEEecchhhccCccceeEEEec---
Confidence 99999999999999999999999999999999987642 1122333345557899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++++.+.......+++.+.|.++..+|.++. .+.++.+++++++++.+.+.|+.++. .+.+.++
T Consensus 248 ~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~~~~~ 315 (389)
T PRK05957 248 PIH----LLEAIKKIQDTILICPPVVSQYAALGALQVGK------SYCQQHLPEIAQVRQILLKSLGQLQD--RCTLHPA 315 (389)
T ss_pred CHH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhcCC--CccccCC
Confidence 778 88888887766666788899999999997643 45666777789999999999987642 1356678
Q ss_pred CcceeEecCC----CH-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 368 QLGMFCFSGL----TP-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 368 ~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++|+|+|+.+ +. +++..+++++||.+.||. |++++..+++++++++++|.+.+++..
T Consensus 316 ~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 316 NGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTIV 387 (389)
T ss_pred CeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999865 33 566777777899999971 999976678889999999999887643
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=362.27 Aligned_cols=338 Identities=14% Similarity=0.164 Sum_probs=271.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++++|+.|.| +. +.++...+.+...+... ...|++..|.++||+++++++....+..+++++|+ +|+|++
T Consensus 28 ~~~~~i~l~~~~~-~~---~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~--~t~G~~ 100 (388)
T PRK07337 28 AGRDIIHMGIGEP-DF---TAPEPVVEAAARALRRG-VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIV--VTAGAS 100 (388)
T ss_pred cCCCEEEeCCcCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEE--EecCcH
Confidence 4578999999996 32 23333333333333333 56699999999999999999854333345588988 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|+.+...++..|++++.+++..++++++|++++++.+. ++++++++++||||
T Consensus 101 ~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP 175 (388)
T PRK07337 101 AALLLA--CLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSNP 175 (388)
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCCC
Confidence 999888 6667899999999999999999999999999999998434568999999999887 67889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|+++++++|+||+|.++.+++. ..+.. ...+++++++||||.+|++|+|+||+++
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~---~~~~~vi~~~S~SK~~~~~G~RiG~~~~--- 246 (388)
T PRK07337 176 TGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA---PVSAL---SLGDDVITINSFSKYFNMTGWRLGWLVV--- 246 (388)
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC---CcChh---hccCCEEEEEechhhcCCchhheeeeec---
Confidence 99999999999999999999999999999999887531 11221 2346799999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc-cc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH-IT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~ 366 (435)
+++ +++.+.+.......+.+.+.|.++..++.+.. .+..++.++.++++++.+.+.|++++. .. ..
T Consensus 247 ~~~----l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~L~~~~~----~~~~~ 313 (388)
T PRK07337 247 PEA----LVGTFEKLAQNLFICASALAQHAALACFEPDT-----LAIYERRRAEFKRRRDFIVPALESLGF----KVPVM 313 (388)
T ss_pred CHH----HHHHHHHHHHHhccCCChHHHHHHHHHhccCc-----hHHHHHHHHHHHHHHHHHHHHHHhcCC----ccccC
Confidence 777 88888877666666788999999988887543 133567789999999999999988763 32 46
Q ss_pred cCcceeEecCCC---------H-HHHHHHhhhccEEEeCCC-----------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGLT---------P-YQVDRLAKEFHIYMTQDG-----------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 367 ~~~g~~~~~~~~---------~-~~~~~ll~~~gI~i~pgg-----------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+++|+|+|+.+. . +++..+++++||.+.||. |++++. +++++.+++++|++++
T Consensus 314 p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 314 PDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred CCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 789999999652 2 345677788999998861 999987 7888999999998764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=361.29 Aligned_cols=339 Identities=15% Similarity=0.103 Sum_probs=267.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc--ccCC-CeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV--VKEG-RSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~~-~v~~~~t~ 124 (435)
.+.+.|+|+.|+| +. .+ ++.+.++....... ...|+++.|.++||+++++++...++.+ ++++ +|+ +|+
T Consensus 26 ~~~~~i~l~~~~p-~~---~~-~~~~~~a~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~--it~ 97 (393)
T TIGR03538 26 ASKPPIALSIGEP-KH---PT-PAFVLEALRENLHG-LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVL--PVN 97 (393)
T ss_pred cCCCeEEecCCCC-CC---CC-CHHHHHHHHHHhhc-cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEE--ECC
Confidence 4689999999996 32 22 34444444443333 5679999999999999999995443222 4464 788 899
Q ss_pred CchhHHHHHHHHHHHhCCCCE--EEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 125 SGTGACRLFAEFQRRFHPESH--IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
|+++++.++ +..+++|||+ |++++|+|..|...++..|++++.+++.+++++.+|++++++++. .++++++++
T Consensus 98 Ga~~al~~~--~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~ 172 (393)
T TIGR03538 98 GTREALFAF--AQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFVC 172 (393)
T ss_pred CcHHHHHHH--HHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh---hcceEEEEe
Confidence 999999988 6777899986 999999999999999999999999998544458899999999886 567899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh----hcCCeEEEEecccccccccCCc
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL----EDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~s~SK~~g~~G~R 278 (435)
+||||||.+++.+++++|+++|++|+++||+||+|.++.+++..........+. +..+++|+++||||.|+++|+|
T Consensus 173 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlR 252 (393)
T TIGR03538 173 SPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLR 252 (393)
T ss_pred CCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccc
Confidence 999999999999999999999999999999999999988753101111111111 1246899999999999999999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||+++ +++ +++.+.+.......+++.+.|.++...+... +++++.++.++++++.+.+.|++. .
T Consensus 253 vG~~i~---~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~L~~~-~ 317 (393)
T TIGR03538 253 SGFVAG---DAE----ILKAFLRYRTYHGCAMPIPTQLASIAAWNDE-------QHVRENRALYREKFAAVLEILGQV-L 317 (393)
T ss_pred eEEEec---CHH----HHHHHHHHHHhhccCcCHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 999964 788 7777777665555677889999988877543 678888999999999999999875 2
Q ss_pred CCCccccccCcceeEecCCC---HHHHHHHhhhccEEEeCC------------C----cEEeccCCCCcHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQD------------G----RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pg------------g----Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
.+..+++|+|+|+.+. .+++..+++++||.+.|| | ||+|+. +++++++++++|+++
T Consensus 318 ----~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 318 ----DLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERIRSF 392 (393)
T ss_pred ----cccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHHHHh
Confidence 2557899999999873 345567767789999765 1 999977 788899999998764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=363.53 Aligned_cols=347 Identities=14% Similarity=0.089 Sum_probs=274.7
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG 116 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 116 (435)
++.....+. .+.++|+|+.|.| +. +.++. +.++...........|++..|.+++|+++++++....+....++
T Consensus 19 ~~~~~~~~~--~~~~~i~l~~g~~-~~---~~~~~-~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~ 91 (386)
T PRK09082 19 IFTVMSALA--AEHGAINLSQGFP-DF---DGPPY-LVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDAD 91 (386)
T ss_pred HHHHHHHHH--hhCCEEEecCCCC-CC---CCCHH-HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCC
Confidence 334444433 2357899999996 33 22223 33333333222245699999999999999999743322223343
Q ss_pred -CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 117 -RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 117 -~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
+++ +|+|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.+++ +++++++|++++++.+. ++
T Consensus 92 ~~i~--~t~G~~~al~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~---~~ 163 (386)
T PRK09082 92 SEIT--VTAGATEALFAA--ILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL-QPPDFRVDWQRFAAAIS---PR 163 (386)
T ss_pred CcEE--EeCCHHHHHHHH--HHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccccCCHHHHHHhcC---cc
Confidence 788 899999999988 6677899999999999999999999999999999998 44568999999999987 57
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++. ...++..+.+..+++++++||||.+|++
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~ 241 (386)
T PRK09082 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA--GHASVLRHPELRERAFVVSSFGKTYHVT 241 (386)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC--CCCChhhCcCccCcEEEEeechhhccch
Confidence 88999999999999999999999999999999999999999999988531 2234444444467899999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ +++.+++.......+++.+.|.+++.++.... ++.++.++.++++++.+.+.|++
T Consensus 242 G~RiG~iv~---~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~ 308 (386)
T PRK09082 242 GWKVGYCVA---PAA----LSAEFRKVHQYNTFTVNTPAQLALADYLRAEP------EHYLELPAFYQAKRDRFRAALAN 308 (386)
T ss_pred hhhhhhhhC---CHH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999974 788 88888887766667789999999998886422 66778889999999999999998
Q ss_pred hCCCCCccccccCcceeEecCC------CH-HHHHHHhhhccEEEeCCC------------cEEeccCCCCcHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL------TP-YQVDRLAKEFHIYMTQDG------------RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~------~~-~~~~~ll~~~gI~i~pgg------------Ris~~~~~~e~i~~~~~~l 416 (435)
.+ +.+.++++|+|+|+.+ +. +++..+++++||.+.||. ||+++. +++++++++++|
T Consensus 309 ~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl 383 (386)
T PRK09082 309 SR----FKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERL 383 (386)
T ss_pred CC----CcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHH
Confidence 75 5677889999999753 23 345667788999999861 999987 788899999988
Q ss_pred HH
Q 013839 417 HE 418 (435)
Q Consensus 417 ~~ 418 (435)
++
T Consensus 384 ~~ 385 (386)
T PRK09082 384 CQ 385 (386)
T ss_pred hh
Confidence 75
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=359.83 Aligned_cols=343 Identities=18% Similarity=0.153 Sum_probs=275.3
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
.+++|+|+.|+| +. ++++ .+.+++..........|+++.|.+++|+++++++....+..+++++|. +|+|+++
T Consensus 23 ~~~~i~l~~g~~-~~---~~~~-~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~--~t~g~~~ 95 (382)
T PRK06108 23 REGVLPLWFGES-DL---PTPD-FIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIA--VTSSGVQ 95 (382)
T ss_pred cCCeEEecCCCC-CC---CCCH-HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEE--EeCChHH
Confidence 467999999996 32 3333 344444443322245599999999999999999854333335578988 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
++.++ +..++.+||+|++++|+|..+...++..|++++.++..++ .+|.+|++++++.+. ++++++++++||||
T Consensus 96 al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NP 170 (382)
T PRK06108 96 ALMLA--AQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNP 170 (382)
T ss_pred HHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCC
Confidence 99888 6667889999999999999999999999999999998432 357799999999886 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|+++++++|+||+|.++.+++. ...+++..+.+..+++++++||||.||++|+|+||+++
T Consensus 171 tG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~--- 246 (382)
T PRK06108 171 TGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG-GRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA--- 246 (382)
T ss_pred CCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC-CCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC---
Confidence 99999999999999999999999999999999987511 12223333334457899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.......+++.+.|.++..+|.+.. +++++.+++++++++.+.+.|++++ ++.+..+
T Consensus 247 ~~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~p 313 (382)
T PRK06108 247 PPA----LGQVLEKLIEYNTSCVAQFVQRAAVAALDEGE------DFVAELVARLRRSRDHLVDALRALP---GVEVAKP 313 (382)
T ss_pred CHH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhCC---CCcccCC
Confidence 778 77777776655567788999999999997653 6678888999999999999998873 2567788
Q ss_pred CcceeEecCC----C-HHHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL----T-PYQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++|+|+|+.+ + .+++..+++++||.+.|| + ||+++. +++++++++++|+++++
T Consensus 314 ~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 314 DGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999866 2 345577777889999886 1 999987 88999999999998764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=354.74 Aligned_cols=357 Identities=16% Similarity=0.196 Sum_probs=276.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCc--cccCCCeeeEecCCch
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSD--VVKEGRSAGVQALSGT 127 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~--~~~~~~v~~~~t~gg~ 127 (435)
..+++.++|.+ .+++.+.+.+.++++..........+|+++.|.++||+++++++.+.... +.+.++|+ +|+|++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~--it~G~~ 79 (388)
T PRK08637 3 ATKYNATIGMA-TEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPI--VTNALT 79 (388)
T ss_pred ccceecceeeE-ecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceee--EccchH
Confidence 46789999998 44455677777777777655445778999999999999999998654321 11225677 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhc-CCCCcEEEEeCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKN-APDSSFFLLHPSAH 205 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~-~~~~~~~v~~~~p~ 205 (435)
+++.++ +..+++|||+|++++|+|+.|...+. ..|++++.+|+. .+++++|++++++.++. ..+.++++++++||
T Consensus 80 ~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~-~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~ 156 (388)
T PRK08637 80 HGLSLV--ADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIF-DEDGGFDTDALKEALQAAYNKGKVIVILNFPN 156 (388)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEeccc-CCCCcCCHHHHHHHHHhhccCCCEEEEEeCCC
Confidence 999888 66678899999999999999998764 689999999983 24468999999998862 12456788899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-----cCceeeeeccCCCccCCCCcccHHHH-HHhhhcCCeE--EEEecccccccccCC
Q 013839 206 NPTGVDPTEEQWREISYQFKV-----KGHFPFFDMAYQGFASGDLDKDAQAI-RIFLEDEHLI--GCAQSYAKSMGLYGH 277 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~-----~~~~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~--i~~~s~SK~~g~~G~ 277 (435)
||||.+++.+++++|+++|++ |+++||+||+|.++.+++. ...++ ..+.+..+++ ++++|+||.+++||+
T Consensus 157 NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~--~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGl 234 (388)
T PRK08637 157 NPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS--YKESLFAALANLHSNILAVKLDGATKEEFVWGF 234 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc--cchhhHHHhhcccccceEEEeccccccCCCccc
Confidence 999999999999999999875 8999999999999988642 22232 2333444564 456799999999999
Q ss_pred cccEEEEEe----cChhHHHHHHHHHHH----HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 278 RVGCLSILC----VDSKQAAAIRSQIQQ----IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 278 RvG~~~~~~----~~~~~~~~~~~~l~~----~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
|+||+++ . .+++ +++.+.+ ..+....+++.+.|.++..+|.++. |.+++++.+..++++++.+
T Consensus 235 RlG~~~~-~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~~~~~~~~~~~r~~~~ 305 (388)
T PRK08637 235 RVGFITF-GTKAGSSQT----VKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPE----FDKEKQEKFQILKERYEKT 305 (388)
T ss_pred ceEEEEE-ccccCCcHH----HHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHH
Confidence 9999973 2 1356 5555543 2222345789999999999998764 5566777888899999999
Q ss_pred HHHHHhhCCCCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCCC----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 350 RQNLEKLGSSLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQDG----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pgg----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.+.|+..+.+..+.+.++++|+|+|+.+. .++++.+++++||.+.+.+ ||+++..+.+++++++++|+++++
T Consensus 306 ~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 306 KEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIK 385 (388)
T ss_pred HHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHH
Confidence 99998765434577888899999999774 2345666677899987643 999987789999999999999987
Q ss_pred hh
Q 013839 422 SE 423 (435)
Q Consensus 422 ~~ 423 (435)
.+
T Consensus 386 ~~ 387 (388)
T PRK08637 386 DL 387 (388)
T ss_pred hc
Confidence 54
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=360.31 Aligned_cols=351 Identities=16% Similarity=0.209 Sum_probs=275.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhc------------CCCCCCCCCCcccHHHHHHHHHhHcCCCC--ccccC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIA------------GSEFLESISASVSTKMVEESVKLVYGKDS--DVVKE 115 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (435)
..+|+|+..+ | ....+.+.+.+.... ......|.+..|.++||+++|+++....+ .++++
T Consensus 47 ~g~i~l~~ae----N--~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p 120 (447)
T PLN02607 47 SGVIQMGLAE----N--QVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDP 120 (447)
T ss_pred CceEEEechh----h--hhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCH
Confidence 4699999998 3 223333333333211 01234488899999999999999954322 24678
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhcC--
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKNA-- 192 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-- 192 (435)
++|+ +|+|+++|+.++ +..++.|||.|+++.|+|+++...+. ..|+++++|++..+++|.+|++.+++++.+.
T Consensus 121 ~~Iv--it~G~t~al~~l--~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~ 196 (447)
T PLN02607 121 DRIV--LTAGATAANELL--TFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEA 196 (447)
T ss_pred HHeE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHH
Confidence 9999 999999999998 66778999999999999999988776 5799999998854456789999999988642
Q ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh------hcCCeEEEE
Q 013839 193 -PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL------EDEHLIGCA 265 (435)
Q Consensus 193 -~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~------~~~~~~i~~ 265 (435)
..++++++++|||||||.+++++++++|+++|++|++++|+||+|..+.|++ ....++..+. +..++++++
T Consensus 197 ~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~--~~f~S~~s~~~~~~~~~~~~~v~vi 274 (447)
T PLN02607 197 ANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA--SEFVSVAEIVEARGYKGVAERVHIV 274 (447)
T ss_pred hCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CCcccHHHHHhhcCCCCCcCcEEEE
Confidence 2467899999999999999999999999999999999999999999988764 1233443332 124689999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
+|+||.||++|+|+||++ +.+++ ++..++... .+..++.++|.+++.+|.++.+. +++++..+++++++
T Consensus 275 ~s~SK~fg~~GlRvG~iv--s~n~~----l~~~~~~~~--~~~~~s~~~q~~~~~~L~d~~~~---~~~l~~~r~~l~~~ 343 (447)
T PLN02607 275 YSLSKDLGLPGFRVGTIY--SYNDK----VVTTARRMS--SFTLVSSQTQHLLASMLSDEEFT---ENYIRTNRERLRKR 343 (447)
T ss_pred EcchhcCCCCcceEEEEE--EcCHH----HHHHHHHHh--hcCCCCHHHHHHHHHHhCCchhH---HHHHHHHHHHHHHH
Confidence 999999999999999997 33666 666666543 23457889999999999987532 25678889999999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCCCH-----------HHHHHHhhhccEEEeCCC----------cEEeccC
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTP-----------YQVDRLAKEFHIYMTQDG----------RISMAGV 404 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~ll~~~gI~i~pgg----------Ris~~~~ 404 (435)
++.+.+.|++.|. .+.++++|+|+|+++.. ++.+++++++||.+.||. ||+|+..
T Consensus 344 ~~~~~~~L~~~gi----~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~ 419 (447)
T PLN02607 344 YEMIVQGLRRAGI----ECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANM 419 (447)
T ss_pred HHHHHHHHHhCCC----CcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccC
Confidence 9999999998874 57788999999997631 234567777899999982 9999876
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhh
Q 013839 405 TTGNVNYLANAIHEVTRSEQETA 427 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~~~~~ 427 (435)
+++++++++++|++++++.+.++
T Consensus 420 ~~~~l~~gl~Ri~~~l~~~~~~~ 442 (447)
T PLN02607 420 SEDTLEVALKRIHRFMDRRKTAS 442 (447)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999998766544
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=328.35 Aligned_cols=355 Identities=13% Similarity=0.095 Sum_probs=305.1
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+.+|.|+.|+|.-.+.+++...+.+++..++..+...+|.|+.|.+..|+++|+|+++.-...+++++|. +|.|-++|
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~--ltsGC~qA 138 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVV--LTSGCSQA 138 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceE--EeccchHH
Confidence 3789999999966666677778888888888888888999999999999999999876666668899999 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
++++ +.++.+||..|++|.|+|+.|...++..|.++.+|.+.++.+|.+|++.+++.++ .+|.+++++||+||+|
T Consensus 139 Ie~~--i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---ENT~AivviNP~NPcG 213 (447)
T KOG0259|consen 139 IELA--ISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---ENTVAIVVINPNNPCG 213 (447)
T ss_pred HHHH--HHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc---cCeeEEEEeCCCCCCc
Confidence 9999 7777789999999999999999999999999999999888899999999999998 7899999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+.|++|+++|++++++||.||+|..+.|++ ....++..+.. -..+|.++|+||-|=.||||+||++. - ++
T Consensus 214 nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~--~pfvpmg~fss-iVPVitlggisKrW~VPGWRlGWi~~-h-D~ 288 (447)
T KOG0259|consen 214 NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD--KPFVPMGKFSS-IVPVITLGGISKRWIVPGWRLGWIAL-H-DP 288 (447)
T ss_pred ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC--CCccchhhccc-cCceEeecccccccccCCceeeeEEE-e-cc
Confidence 99999999999999999999999999999999986 45666666633 35799999999999999999999974 3 43
Q ss_pred hHH-H--HHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-cc
Q 013839 290 KQA-A--AIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-HI 365 (435)
Q Consensus 290 ~~~-~--~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~ 365 (435)
+.. . .+.+.+.+.. ....+++++.|.|+-.+|+... +++.......++.+.+.-.+.|++++. .. ..
T Consensus 289 ~gvf~~~~~~q~~~~~~-~~~~~p~TiiQ~AlP~IL~kTp-----~efF~k~~~~lk~na~l~y~~Lk~IP~---l~cp~ 359 (447)
T KOG0259|consen 289 RGVFRDTKVVQGIKNFL-DIIPGPATIIQGALPDILEKTP-----EEFFDKKLSFLKSNADLCYSRLKDIPC---LTCPV 359 (447)
T ss_pred cccccchHHHHHHHHHH-hccCCccHhHHHHhHHHHHhCh-----HHHHHHHHHHHHhhHHHHHHHHhcCCC---cccCc
Confidence 331 1 1334555544 3467899999999999998543 377888889999999999999999874 34 67
Q ss_pred ccCcceeEecCC----------CHHHHHHHhhhccEEEeCC---C-----cEEeccCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 366 TNQLGMFCFSGL----------TPYQVDRLAKEFHIYMTQD---G-----RISMAGVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 366 ~~~~g~~~~~~~----------~~~~~~~ll~~~gI~i~pg---g-----Ris~~~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
.|++.+|+|+++ +-+++++|.+|+.+.+.|| | |++++. ..+.++++.+||+++.++..++
T Consensus 360 kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~-~~~~leea~~Rik~Fc~RH~~~ 437 (447)
T KOG0259|consen 360 KPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITV-EEEMLEEAFSRIKEFCDRHSKE 437 (447)
T ss_pred CCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEcc-ChHHHHHHHHHHHHHHHhhhhc
Confidence 899999999976 3578899999999999999 2 999976 8899999999999999765533
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=357.10 Aligned_cols=357 Identities=14% Similarity=0.107 Sum_probs=279.1
Q ss_pred cCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCC
Q 013839 29 VAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGK 108 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~ 108 (435)
+...+...+.++.+... .+++|+|+.|.| +.+ .+....+.+.+.+... ..+|++..|.+++|+++++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~---~~~~i~l~~g~p-~~~---~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~ 77 (387)
T PRK07777 6 LRPFGTTIFAEMSALAV---RTGAVNLGQGFP-DED---GPPEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAAQRRRR 77 (387)
T ss_pred hhhcCccHHHHHHHHHh---hCCeEEccCCCC-CCC---CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 33344444444444442 358899999997 442 2334444444444333 467999999999999999987333
Q ss_pred CCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHhHH
Q 013839 109 DSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAALM 186 (435)
Q Consensus 109 ~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~ 186 (435)
.+....++ +|+ +|+|+++|+.++ +.+++.+||+|+++.|+|..+...++..|.+++.+++.+. .++.+|+++++
T Consensus 78 ~g~~~~~~~~i~--~t~G~~~al~~~--~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 153 (387)
T PRK07777 78 YGLEYDPDTEVL--VTVGATEAIAAA--VLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALR 153 (387)
T ss_pred hCCCCCCCCcEE--EeCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHH
Confidence 22223354 688 899999999887 6777889999999999999999999999999999988433 35789999999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
+.+. ++++++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++. ...++..+.+..+++++++
T Consensus 154 ~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~ 228 (387)
T PRK07777 154 AAVT---PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTVTIS 228 (387)
T ss_pred HhcC---cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCCCcCcEEEEe
Confidence 9886 5678999999999999999999999999999999999999999999887542 2234444444456899999
Q ss_pred cccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
||||.||++|+|+||+++ +++ +++.+.+.......+.+.+.|.++..++.... ++++..++.+++++
T Consensus 229 S~SK~~g~~GlRiG~~~~---~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~ 295 (387)
T PRK07777 229 SAAKTFNVTGWKIGWACG---PAP----LIAAVRAAKQYLTYVGGAPFQPAVAHALDHED------AWVAALRDSLQAKR 295 (387)
T ss_pred echhhccCcCceeEEEec---CHH----HHHHHHHHHhhcccCCCCHHHHHHHHHHhCCc------HHHHHHHHHHHHHH
Confidence 999999999999999974 777 88878776655555677888988888887543 66788889999999
Q ss_pred HHHHHHHHhhCCCCCccccccCcceeEecCC------C-HHHHHHHhhhccEEEeCCC-------------cEEeccCCC
Q 013839 347 TTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------T-PYQVDRLAKEFHIYMTQDG-------------RISMAGVTT 406 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~-~~~~~~ll~~~gI~i~pgg-------------Ris~~~~~~ 406 (435)
+.+.+.|++++ +.+.++++++|+|+.+ + .+++..+++++||.+.||. ||+++. ++
T Consensus 296 ~~l~~~L~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~ 370 (387)
T PRK07777 296 DRLAAGLAEAG----FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RD 370 (387)
T ss_pred HHHHHHHHhCC----CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CH
Confidence 99999999875 5677888999999753 3 3455777677899998861 999976 78
Q ss_pred CcHHHHHHHHHHHH
Q 013839 407 GNVNYLANAIHEVT 420 (435)
Q Consensus 407 e~i~~~~~~l~~~l 420 (435)
+++++++++|+++.
T Consensus 371 ~~l~~~l~~l~~~~ 384 (387)
T PRK07777 371 DTLDEAIRRLRALR 384 (387)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=363.31 Aligned_cols=368 Identities=16% Similarity=0.181 Sum_probs=278.8
Q ss_pred CCCchhhHHHHHhcC-----CCC-CeeeeecceecCCCCCcccchHHHHHHHH-------hc-CCCCCCCCCCcccHHHH
Q 013839 33 AKDPINGVTEAFLAD-----PSP-YKINLGVGAYRDDKGRPVVLQCVREAEAK-------IA-GSEFLESISASVSTKMV 98 (435)
Q Consensus 33 ~~~~~~~~~~~~~~~-----~~~-~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~Y~~~~g~~~lr 98 (435)
+.++.+.--+++..+ .++ .+|+|+..+ +.--.....+.+++.... +. ......|++..|.++||
T Consensus 23 ~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aE--N~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR 100 (496)
T PLN02376 23 ENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAE--NQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFR 100 (496)
T ss_pred CCCchHHHHHHHhCCCCCcccCCCceEEeecch--hhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHH
Confidence 334455555566532 334 789999998 221112223333332221 10 11234588899999999
Q ss_pred HHHHHhHcCCCC--ccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCC
Q 013839 99 EESVKLVYGKDS--DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDP 175 (435)
Q Consensus 99 ~~ia~~l~~~~~--~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~ 175 (435)
+++|+++....+ .++++++|+ +|+|+++|+.++ +.+++.|||.|++++|+|+.+...+. ..|++++++++..+
T Consensus 101 ~aiA~~l~~~~g~~v~v~pe~Iv--it~Ga~~al~~l--~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~ 176 (496)
T PLN02376 101 QAIAHFMGKARGGKVTFDPERVV--MSGGATGANETI--MFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSS 176 (496)
T ss_pred HHHHHHHHHHhCCCCcCChhhEE--EccchHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCC
Confidence 999999954333 336689999 999999999998 77788999999999999999998777 58999999998544
Q ss_pred CCCCcChHhHHHHhhc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 176 DSKSLDFAALMDDIKN---APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 176 ~~~~~d~e~l~~~i~~---~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+++++|++.+++++.+ ...++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ...++
T Consensus 177 ~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~--~~~si 254 (496)
T PLN02376 177 DNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG--DFVSV 254 (496)
T ss_pred ccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC--CcccH
Confidence 5689999999876532 124678999999999999999999999999999999999999999999987642 23454
Q ss_pred HHhhhc-------CCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 253 RIFLED-------EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 253 ~~~~~~-------~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
..+... .+++++++||||.||+||+|+||++ +.++. +.+.+++.. ....++.+.|.+++.+|.++
T Consensus 255 ~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li--~~~~~----l~~~~~~~~--~~~~vs~~~Q~a~~~~L~d~ 326 (496)
T PLN02376 255 AEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVY--SFNDS----VVSCARKMS--SFGLVSSQTQLMLASMLSDD 326 (496)
T ss_pred HHhhccccccccCCCeEEEEEeccccCCCCcceEEEEE--ECCHH----HHHHHHHHh--hcCCCCHHHHHHHHHHhCCh
Confidence 444211 2467889999999999999999996 43455 555554433 23458899999999999876
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC------------HHHHHHHhhhccEE
Q 013839 326 NLKSLW-IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT------------PYQVDRLAKEFHIY 392 (435)
Q Consensus 326 ~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~ll~~~gI~ 392 (435)
. | ++++++.+++++++++.+.+.|++.+ +.+.++++|+|+|+++. .++...++++.||.
T Consensus 327 ~----~~~~~l~~~r~~l~~r~~~l~~~L~~~g----i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~ 398 (496)
T PLN02376 327 Q----FVDNFLMESSRRLGIRHKVFTTGIKKAD----IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLN 398 (496)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEE
Confidence 5 3 46678889999999999999999876 45778899999999762 12345566678999
Q ss_pred EeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MTQDG----------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.||. ||+|+..+++.++.++++|++++.+..
T Consensus 399 v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~ 440 (496)
T PLN02376 399 VSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKNK 440 (496)
T ss_pred EeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence 99972 999987678999999999999986544
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=356.51 Aligned_cols=344 Identities=13% Similarity=0.144 Sum_probs=274.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
.++++++|+.|.| +. ..++..++++...+.......|+++.|.++||+++++++...++.+..++ +++ +|+|+
T Consensus 27 ~~~~~i~l~~g~p-~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~--~t~G~ 100 (395)
T PRK08175 27 RGEDIIDFSMGNP-DG---PTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAI--VTIGS 100 (395)
T ss_pred cCCCeEEcCCCCC-CC---CCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE--EccCc
Confidence 4578999999997 32 23444555555555444457799999999999999999854333334465 788 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +..++.|||+|++++|+|+.+...++..|++++.+++. ++ +.+.+++++++++..++++++++++|||
T Consensus 101 ~~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~--~~~~~~l~~~l~~~~~~~~~v~i~~p~N 175 (395)
T PRK08175 101 KEGLAHL--MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLV-EG--VDFFNELERAIRESYPKPKMMILGFPSN 175 (395)
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecc-cC--CCcHHHHHHHHhhccCCceEEEEeCCCC
Confidence 9999887 66678999999999999999988889999999999883 33 2357888888764434688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ..+++..+....+++++++||||.||+||+|+||+++
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-- 251 (395)
T PRK08175 176 PTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW--KAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-- 251 (395)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC--CCcchhcCCCcccCEEEEeeccccccCcchhheeeeC--
Confidence 999999999999999999999999999999999887542 2233333333346789999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.+.......+++.+.|.++..++.+.. ++++..+++++++++++.+.|+.++ +.+..
T Consensus 252 -~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~ 316 (395)
T PRK08175 252 -NPE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQ------QCVRDIAEQYKRRRDVLVKGLHEAG----WMVEM 316 (395)
T ss_pred -CHH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHcC----CcccC
Confidence 888 88888877665556777888998888886542 6788899999999999999999886 45667
Q ss_pred cCcceeEecCCC--------HHHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGLT--------PYQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~~--------~~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+++|+|+|+.+. .+++..+++++||.+.|| + ||+++. +++.+.+++++|++++++
T Consensus 317 p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~-~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 317 PKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIE-NRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred CCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence 889999999652 234466777899999997 1 999974 788899999999998864
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=360.12 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=260.4
Q ss_pred hHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC----CCCCCCCCCcccHHHHHHHHHhHcCCCCccc
Q 013839 39 GVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG----SEFLESISASVSTKMVEESVKLVYGKDSDVV 113 (435)
Q Consensus 39 ~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (435)
..++.++. ..++++++|+.|+| +. ++++...+.+.+.+.. ....+|+++.|.++||+++++++...++..+
T Consensus 22 ~~~~~~~~~~~~~~~i~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~ 97 (409)
T PRK07590 22 RRVNAFREANPEAKIIRLGIGDV-TQ---PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDI 97 (409)
T ss_pred HHHHHHhhhcCCCceEEecCcCC-CC---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcC
Confidence 34444433 23568999999996 33 2333333333333321 1356799999999999999999855555556
Q ss_pred cCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-----------eeeeeecCCCCCCcCh
Q 013839 114 KEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-----------ERTYHYYDPDSKSLDF 182 (435)
Q Consensus 114 ~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~d~ 182 (435)
++++|+ +|+|+++++.++ ..++.|||+|++++|+|+.|...++..|.+ ++.+++..++++.+|+
T Consensus 98 ~~~~I~--it~Ga~~al~~l---~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 172 (409)
T PRK07590 98 SADEIF--ISDGAKCDTGNI---LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPEL 172 (409)
T ss_pred ChhhEE--ECCCHHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccC
Confidence 689999 999999998875 345789999999999999999999999987 8888873233344443
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
++ ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+....+++
T Consensus 173 ~~---------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~v 241 (409)
T PRK07590 173 PE---------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS--LPHSIYEIEGARECA 241 (409)
T ss_pred cc---------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC--CCcchhhCCCcccce
Confidence 21 4678999999999999999999999999999999999999999999887541 123344443334679
Q ss_pred EEEecccccccccCCcccEEEEEecChhHHHHHHHH------------HHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ------------IQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 263 i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
|+++||||++|++|+|+||+++ +++ +++. +.......+.+++.+.|.++..++.+..
T Consensus 242 i~~~SfSK~~~~pGlRiG~~i~---~~~----li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~---- 310 (409)
T PRK07590 242 IEFRSFSKTAGFTGTRCAYTVV---PKE----LKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG---- 310 (409)
T ss_pred EEEecCccccCCcCceeEEEEc---CHH----HhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc----
Confidence 9999999999999999999974 777 5541 2222223345688899999988887532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----C-HHHHHHHhhhccEEEeCCC--------
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----T-PYQVDRLAKEFHIYMTQDG-------- 397 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pgg-------- 397 (435)
.+++++.++.++++++.+.+.|+.++ +.+..+.+|+|+|+.+ + .+++..+++++||.+.||.
T Consensus 311 -~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~ 385 (409)
T PRK07590 311 -KAQIKELIDYYMENAKIIREGLESAG----FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEG 385 (409)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCC
Confidence 26778889999999999999999875 4566788999999976 3 3455777777899999872
Q ss_pred --cEEeccCCCCcHHHHHHHHHHH
Q 013839 398 --RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 398 --Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
||+++. +++++++++++|+++
T Consensus 386 ~iRi~~~~-~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 386 YFRLSAFG-SRENVLEAMERIKKA 408 (409)
T ss_pred EEEEEccC-CHHHHHHHHHHHHhh
Confidence 999755 788999999999875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=358.90 Aligned_cols=342 Identities=13% Similarity=0.146 Sum_probs=273.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
++.|+|+.|+| +. +. ++.+.++..........+|.+..|.++||+++++++....+..+++++|+ +|+|++++
T Consensus 33 ~~~i~l~~~~~-~~---~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~a 105 (391)
T PRK08361 33 ENVISLGIGEP-DF---DT-PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVI--VTAGAYEA 105 (391)
T ss_pred cCeEEcCCCCC-CC---CC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEE--EeCChHHH
Confidence 57899999996 32 22 34444444444322245698889999999999999843222235578998 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +..++.+||+|++++|+|..+...++..|++++.+++.++.++.+|++++++.+. ++++++++++||||||
T Consensus 106 l~~~--~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~i~~p~NPtG 180 (391)
T PRK08361 106 TYLA--FESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELIT---KRTRMIVINYPNNPTG 180 (391)
T ss_pred HHHH--HHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc---cccEEEEEeCCCCCCC
Confidence 9888 6667889999999999999999999999999999998434467899999999987 5688999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++|+++|+++++++|+||+|.++.+++. ...++... ..+++++++|+||.+|++|+|+||+++ ++
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~~---~~ 253 (391)
T PRK08361 181 ATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVIA---PE 253 (391)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhcc---CH
Confidence 999999999999999999999999999999887532 12233222 236799999999999999999999974 77
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+.......+.+.+.|.++..+|.+.. +.+++++.+++++++++.+.+.|+.++ ++.+..+++
T Consensus 254 ~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~~---~~~~~~p~g 322 (391)
T PRK08361 254 Q----VIKDMIKLHAYIIGNVASFVQIAGIEALRSKE----SWKAVEEMRKEYNERRKLVLKRLKEMP---HIKVFEPKG 322 (391)
T ss_pred H----HHHHHHHHHhhhccCCChHHHHHHHHHhcCCc----ccHHHHHHHHHHHHHHHHHHHHHHhCC---CCeecCCCE
Confidence 7 77777776655566788899999999998753 225678899999999999999998863 256788899
Q ss_pred ceeEecCC-----CH-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 370 GMFCFSGL-----TP-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 370 g~~~~~~~-----~~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
|+|+|+.+ +. ++...+++++||.+.||. ||+++. +++++..++++|++++++
T Consensus 323 ~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 323 AFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEE 390 (391)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 99999854 33 445666667899999861 999986 778899999999988764
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=354.73 Aligned_cols=353 Identities=13% Similarity=0.087 Sum_probs=271.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|+| +..+.+.++..++.+...+. . ...|+++.|.++||+++++++.......+++++|+ +++|++
T Consensus 31 ~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~-~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~--~t~G~~ 105 (404)
T PRK09265 31 EGHKILKLNIGNP-APFGFEAPDEILRDVIRNLP-T-AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIY--IGNGVS 105 (404)
T ss_pred cCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhh-c-CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEE--EeCChH
Confidence 5679999999997 32223445556665555543 2 46799999999999999999954433345688998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +.+++.+||+|++++|+|..+...++..|++++.++...++++.+|++++++.+. ++++++++++||||
T Consensus 106 ~~l~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NP 180 (404)
T PRK09265 106 ELIVMA--MQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNNP 180 (404)
T ss_pred HHHHHH--HHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc---ccceEEEEECCCCC
Confidence 999888 6667889999999999999999999999999998887333457899999999886 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++|++++|+||+|.++.+++. ...++..+. ...++++++||||.+|+||+|+||+++ ..
T Consensus 181 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~vi~~~S~SK~~~~pGlRiG~~v~-~~ 256 (404)
T PRK09265 181 TGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASLA-PDLLCVTFNGLSKAYRVAGFRVGWMVL-SG 256 (404)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHcC-CCceEEEEecchhhccCcccceEEEEE-eC
Confidence 99999999999999999999999999999999987541 223333332 234789999999999999999999973 23
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++..+.+++.+... .....+++.++|.++..+|.+.+. + +...+.+++++++++.+.+.|++++ ++.+..+
T Consensus 257 ~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~---~-~~~~~~~~~~~~~r~~~~~~L~~~~---~~~~~~p 328 (404)
T PRK09265 257 PKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQS---I-NELILPGGRLYEQRDRAWELLNAIP---GVSCVKP 328 (404)
T ss_pred chHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchh---H-HHHHHHHHHHHHHHHHHHHHHhcCC---CCcccCC
Confidence 554333455555433 234467888999999999975421 1 1122223567778888999998763 2567889
Q ss_pred CcceeEecCCC---------HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 368 QLGMFCFSGLT---------PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 368 ~~g~~~~~~~~---------~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
++|+|+|+.++ .+++.++++++||.+.||. |++++. +++++++++++|+++++..
T Consensus 329 ~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~-~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 329 KGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLP-RVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred CcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 99999998552 3456677788999999871 999964 8899999999999988643
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=354.99 Aligned_cols=368 Identities=15% Similarity=0.145 Sum_probs=289.3
Q ss_pred ccccccCCCCCCchhhHHHHHh--cCCCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCCcccHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFL--ADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISASVSTKMVEE 100 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~ 100 (435)
.+.+++...+++.+.+..+..+ ....++.++|+.|+| +. +.+ +.+.++..+ +... ...|++..|.+.||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~-~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ 76 (393)
T PRK05764 3 KLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEP-DF---DTP-EHIKEAAIEALDDG-KTKYTPAAGIPELREA 76 (393)
T ss_pred chhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCC-CC---CCC-HHHHHHHHHHHhcC-CCCcCCCCChHHHHHH
Confidence 3556676666666544333332 123468999999996 32 333 344444443 3333 4569999999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
+++++....+..+.+++++ +++|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.++...++++.+
T Consensus 77 ia~~~~~~~~~~~~~~~i~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (393)
T PRK05764 77 IAAKLKRDNGLDYDPSQVI--VTTGAKQALYNA--FMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKL 152 (393)
T ss_pred HHHHHHHHhCCCCCHHHEE--EeCCcHHHHHHH--HHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcC
Confidence 9999843333334578888 999999999888 666788999999999999999999999999999999843446789
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDE 259 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~ 259 (435)
|++.+++.+. ++++++++++||||||.+++.+++++|+++|++|++++|+||+|..+.+++. ...++... .+..
T Consensus 153 d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~ 227 (393)
T PRK05764 153 TVEQLEAAIT---PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPELR 227 (393)
T ss_pred CHHHHHHhhC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCCCc
Confidence 9999999886 5678999999999999999999999999999999999999999999887531 22233333 3445
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+++++++||||.++++|+|+||+++ +++ +++.+.........+++.+.|.++..+|... .+++++.+
T Consensus 228 ~~~i~~~s~SK~~~~~G~RiG~i~~---~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~ 294 (393)
T PRK05764 228 DRTITVNGFSKAYAMTGWRLGYAAG---PKE----LIKAMSKLQSHSTSNPTSIAQYAAVAALNGP------QDEVEEMR 294 (393)
T ss_pred CCEEEEecCcccccCccceeEEEec---CHH----HHHHHHHHHhhcccCCChHHHHHHHHHHcCC------hHHHHHHH
Confidence 6899999999999999999999974 888 8888887776667788999999999988732 26677888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------cEEe
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG--------RISM 401 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg--------Ris~ 401 (435)
+.++++++.+.+.|+++. ++.+..+++|+|+|+.+. .++...+++++||.+.||. ||++
T Consensus 295 ~~~~~~~~~l~~~L~~~~---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~ 371 (393)
T PRK05764 295 QAFEERRDLMVDGLNEIP---GLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSY 371 (393)
T ss_pred HHHHHHHHHHHHHHhhCC---CCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEe
Confidence 999999999999998872 156677899999998542 3445677777899999872 9999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+. +++++++++++|++++++.
T Consensus 372 ~~-~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 372 AT-SLEDLEEGLERIERFLESL 392 (393)
T ss_pred cC-CHHHHHHHHHHHHHHHHhh
Confidence 87 8899999999999988753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=353.56 Aligned_cols=366 Identities=12% Similarity=0.100 Sum_probs=278.8
Q ss_pred chhhHHHHHhc--CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccc
Q 013839 36 PINGVTEAFLA--DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVV 113 (435)
Q Consensus 36 ~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (435)
++.+....+++ ..+.++|+|+.|.|...+..+++....+.+...+.......|++..|.+++|+++++++....+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 94 (403)
T TIGR01265 15 PIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL 94 (403)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 34444444443 2457999999999721122233444443333334333345698999999999999999964433345
Q ss_pred cCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 114 KEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 114 ~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
.+++++ +|+|+++|+.++ +.+++.+||+|++++|+|..+...++..|++++.+++..++++++|++.+++.+.
T Consensus 95 ~~~~ii--~t~G~t~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--- 167 (403)
T TIGR01265 95 TADDVV--LTSGCSQAIEIC--IEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD--- 167 (403)
T ss_pred CHHHEE--EecChHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC---
Confidence 578888 999999999998 6667789999999999999999999999999999887434468899999999886
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++++||||||.+++.+++++|+++|+++|+++|+|++|.++.+++ ....++..+. ...++|+++||||.|+
T Consensus 168 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~vi~~~S~SK~~~ 244 (403)
T TIGR01265 168 EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASFA-SIVPVLSLGGISKRWV 244 (403)
T ss_pred cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhhc-cCCcEEEEeecccccC
Confidence 567899999999999999999999999999999999999999999998764 1223444442 2357999999999999
Q ss_pred ccCCcccEEEEEecChhHHHH-HHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAA-IRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
+||+|+||+++ ..+++.+.. +++.+.+... ...+++.+.|.++..+|.+.. ..++++.+++++++++.+.+.
T Consensus 245 ~pGlRiG~~v~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~ 317 (403)
T TIGR01265 245 VPGWRLGWIII-HDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENTP-----QEFFDGKISVLKSNAELCYEE 317 (403)
T ss_pred CCcceEEEEEE-eCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999974 212222222 4555555433 245688999999999986521 367888899999999999999
Q ss_pred HHhhCCCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHH
Q 013839 353 LEKLGSSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLAN 414 (435)
Q Consensus 353 l~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~ 414 (435)
|+.++ ++.+..|++|+|+|+.++ .+++..+++++||.+.||. ||+++. ++++++++++
T Consensus 318 L~~~~---~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~-~~~~l~~~l~ 393 (403)
T TIGR01265 318 LKDIP---GLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV-PESMLEEACS 393 (403)
T ss_pred HhcCC---CceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHH
Confidence 98763 245567889999999662 2445776778999999982 999986 7788999999
Q ss_pred HHHHHHHh
Q 013839 415 AIHEVTRS 422 (435)
Q Consensus 415 ~l~~~l~~ 422 (435)
+|++++++
T Consensus 394 ~l~~~~~~ 401 (403)
T TIGR01265 394 RIKEFCER 401 (403)
T ss_pred HHHHHHHh
Confidence 99988754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=362.26 Aligned_cols=344 Identities=16% Similarity=0.102 Sum_probs=262.0
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCC--C--ccccCCCeeeEecCC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKD--S--DVVKEGRSAGVQALS 125 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~--~--~~~~~~~v~~~~t~g 125 (435)
.++|+|+.|+| +. ++ ++.+.++...+. + . +|+++.|.+++|++|++++.... . .+..+++|+ +|+|
T Consensus 100 ~~~i~l~~g~p-~~---~~-~~~v~e~~~~~~-~-~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~--vT~G 169 (527)
T PRK09275 100 RDAVSYVRDQL-GF---DA-DEFVYELVDGII-G-D-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLF--AVEG 169 (527)
T ss_pred HHHHhhcCCCC-CC---CC-CHHHHHHHHHHh-c-C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEE--EeCC
Confidence 36799999997 54 33 344455666654 3 2 49999999999999999663321 1 111134788 9999
Q ss_pred chhHHHHHHHHH---HHhCCCCEEEEcCCCChhhHHHHhhCCCC--eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 126 GTGACRLFAEFQ---RRFHPESHIYFPDPTWSNHHNIWRDAQIP--ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 126 g~~a~~~~~~~~---~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~--~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
+++|+..++..+ .+++|||+|++++|+|+.|...++..|.. ++.++...+++|.+|+++++++++ +++++++
T Consensus 170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~ 246 (527)
T PRK09275 170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALF 246 (527)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEE
Confidence 999999883211 26889999999999999999988877554 455554334568999999999877 7889999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
++|||||||.+++.+++++|+++|++ ++++||+||+|..|.+. ..++... ..+++|+++||||.||++|||
T Consensus 247 l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~s~~~~--~~~~~I~v~SfSK~f~mtG~R 319 (527)
T PRK09275 247 LVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-----FRSLFAV--LPYNTILVYSFSKYFGATGWR 319 (527)
T ss_pred EeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-----ccCHHHh--CCCCEEEEeehhhhccCcHhH
Confidence 99999999999999999999999964 59999999999998752 1222222 347899999999999999999
Q ss_pred ccEEEEEecChhHHHHHHHHH--------------------------------HHHhhccccCCChhHHHHH-----HHH
Q 013839 279 VGCLSILCVDSKQAAAIRSQI--------------------------------QQIARAMYGSPPVHGILLV-----ATI 321 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l--------------------------------~~~~~~~~~~~~~~~q~~~-----~~~ 321 (435)
+||++ +++++..+++++.+ ++.....+.+++.+.|.++ .++
T Consensus 320 lG~i~--~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~al 397 (527)
T PRK09275 320 LGVIA--LHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFAL 397 (527)
T ss_pred Hhhhh--cCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 99996 43333333343333 5666677889999999873 344
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------------HH
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------------------PY 380 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~ 380 (435)
+...+ ++.+++++.++++++.+.+.| +. .+...+++++||+|+++. .+
T Consensus 398 l~~~~------~~~~~~~~~~~~Rr~~l~~~L---g~--~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~ 466 (527)
T PRK09275 398 LDEED------AYKKAMKDIIRRRYKALYEGL---GL--PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVD 466 (527)
T ss_pred HhCch------HHHHHHHHHHHHHHHHHHHHc---CC--CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHH
Confidence 55433 678889999999999998887 32 133457899999999652 24
Q ss_pred HHHHHhhhccEEEeCCC---------cEEeccCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 381 QVDRLAKEFHIYMTQDG---------RISMAGVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 381 ~~~~ll~~~gI~i~pgg---------Ris~~~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
++.+|+++.||.+.||. |||+++.+++++.++.++|++++++..++
T Consensus 467 f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~ 521 (527)
T PRK09275 467 LLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYEE 521 (527)
T ss_pred HHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999982 99998778899999999999999876643
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=353.09 Aligned_cols=341 Identities=18% Similarity=0.125 Sum_probs=271.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++..|+|+.|+| +. + +++.+.+++.+. .......|++..|.++||+++++++....+..+++++|+ +|+|+
T Consensus 27 ~~~~~i~l~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~ 99 (386)
T PRK07550 27 ADGPLIDLSQAVP-GY---P-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVH--ITSGC 99 (386)
T ss_pred cCCCeEEeCCCCC-CC---C-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEE--EecCc
Confidence 5678999999996 22 2 234444444443 233356799999999999999999854434345578988 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ +.+++.+||+|++++|+|.++...++..|++++.+++.+++++.+|++++++.++ ++++++++++|||
T Consensus 100 ~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~P~N 174 (386)
T PRK07550 100 NQAFWAA--MVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT---PRTRAIALVTPNN 174 (386)
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc---ccCcEEEEeCCCC
Confidence 9999888 6667889999999999999999999999999999998434567789999999987 5678888889999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++|+++||+||+|.++.++.. ...+.....+..+++++++||||.+|++|+|+||+++
T Consensus 175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~-- 250 (386)
T PRK07550 175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA-- 250 (386)
T ss_pred CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCCCccccEEEEecchhhccCcccceEeeec--
Confidence 999999999999999999999999999999998876421 1122222223356899999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.+.......+++.++|.++..++.+. ++++++.++.++++++.+.+.|+.+.. +.+ .
T Consensus 251 -~~~----~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~-~ 315 (386)
T PRK07550 251 -SPA----RIAEIEKFMDTVAICAPRIGQIAVAWGLPNL------ADWRAGNRAEIARRRDAFRAVFARLPG---WEL-L 315 (386)
T ss_pred -CHH----HHHHHHHHHhhcccCCCcHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHhCCC---cee-C
Confidence 777 8888887776667788999999999998753 367778888999999999999988631 333 3
Q ss_pred cCcceeEecCC-----C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL-----T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 367 ~~~g~~~~~~~-----~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+.+|+|+|+.+ + .+++..+++++||.+.||. ||+++..+++++++++++|+++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 316 ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 56899999854 3 3455667778999999961 9999876788999999999875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=360.84 Aligned_cols=330 Identities=15% Similarity=0.130 Sum_probs=264.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
...++|+.|.| +. +.++ .+.+++...... ...|++..|.++||+++++++...... +++|+ +|+|++++
T Consensus 85 ~~~i~L~~g~p-~~---~~~p-~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~---~~~Ii--it~G~~~a 153 (431)
T PRK15481 85 TPLHDLAGGNP-DP---QRLP-DLSRYFARLSRT-PRLYGDAPVSPELHAWAARWLRDDCPV---AFEID--LTSGAIDA 153 (431)
T ss_pred chhhhhhcCCC-Ch---hHhH-HHHHHHHHhhhh-hhhcCCcCCCHHHHHHHHHHHhhccCC---cCeEE--EecCcHHH
Confidence 46889999986 32 2222 244444443322 456999999999999999998432121 46888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC-CCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP-SAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~-~p~NPt 208 (435)
+.++ +.+++.|||+|++++|+|+.+...++..|++++.+++ +++ ++|++.++++++ .++++++++ +|||||
T Consensus 154 l~~~--~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~--g~~~~~l~~~~~---~~~k~i~~~p~p~NPT 225 (431)
T PRK15481 154 IERL--LCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSV-DAE--GMQPEKLERALA---QGARAVILTPRAHNPT 225 (431)
T ss_pred HHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeecc-CCC--CCCHHHHHHHHh---cCCCEEEECCCCCCCC
Confidence 9988 7778899999999999999999999999999999998 333 689999999987 456666665 999999
Q ss_pred CCCCCHHHHHHHHHHHHhc-CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVK-GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~-~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++++|+++|++| +++||+||+|.++.+++. . +. +....+++++++||||+|+ +|+|+||+++
T Consensus 226 G~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~---~-~~--~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~--- 295 (431)
T PRK15481 226 GCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY---H-SV--IPQTTQRWALIRSVSKALG-PDLRLAFVAS--- 295 (431)
T ss_pred CccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC---C-CC--CcCCCCCEEEEeeeccccC-CCceeEEEeC---
Confidence 9999999999999999999 999999999999976431 1 11 1122468999999999999 9999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.......+++.++|.++..+|.++. +.+++++.++.++++++.+.+.|++.+ +.+..|
T Consensus 296 ~~~----~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~l~~~~~~~~~~r~~~~~~L~~~~----~~~~~p 363 (431)
T PRK15481 296 DSA----TSARLRLRLNSGTQWVSHLLQDLVYACLTDPE----YQARLAQARLFYAQRRQKLARALQQYG----IAIPSP 363 (431)
T ss_pred CHH----HHHHHHHHHhccccCCCHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHHHHHHHHHHcC----CccccC
Confidence 788 77777665544445689999999999998764 456788999999999999999999876 456678
Q ss_pred CcceeEecCCC---HHHHHHHhhhccEEEeCCC-----------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGLT---PYQVDRLAKEFHIYMTQDG-----------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~~---~~~~~~ll~~~gI~i~pgg-----------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++|+|+|+.+. .+++..+ .++||.+.||. ||+++..++++++.++++|++++.
T Consensus 364 ~gg~f~~~~l~~~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 364 GDGLNLWLPLDTDSQATALTL-AKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred CCeEEEEEECCCCHHHHHHHH-HHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 99999999873 3344555 57899999861 999987788999999999998864
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=351.36 Aligned_cols=333 Identities=14% Similarity=0.126 Sum_probs=256.0
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCC-----CC---------------------cccchHHHHHHHHhc--CCCCCCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDK-----GR---------------------PVVLQCVREAEAKIA--GSEFLES 88 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~-----~~---------------------~~~~~~~~~~~~~~~--~~~~~~Y 88 (435)
+....++.+ ..+.++|+|++|+| +.. .+ ..+++.+.++...+. .+...+|
T Consensus 26 ~~~~a~~~~-~~g~~vi~l~iG~P-d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~~~~Y 103 (407)
T PLN02368 26 LYLRASELQ-KEGKKIIFTNVGNP-HALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAY 103 (407)
T ss_pred HHHHHHHHH-HHhhhhhcccCCCh-hHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 334444443 25679999999998 311 01 125566676666653 2335679
Q ss_pred CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCChhhHHHHhhCCCCe
Q 013839 89 ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF-HPESHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 89 ~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
+++.|.++||++|++++...++..+++++|+ +|+|+++++.++ +.+++ ++||+|++++|+|+.|...++..|+++
T Consensus 104 ~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~--it~Ga~~al~~~--~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~ 179 (407)
T PLN02368 104 SDSRGLPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQI--LNAVIRGEKDGVLVPVPQYPLYSATISLLGGTL 179 (407)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCChhhEE--EcccHHHHHHHH--HHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEE
Confidence 9999999999999999965444456688999 999999999888 66666 699999999999999999999999999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
+.+++..+++|++|++.+++.+++. ..+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++
T Consensus 180 v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~ 259 (407)
T PLN02368 180 VPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQD 259 (407)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 9999854556899999999998631 1268999999999999999999999999999999999999999999999864
Q ss_pred CcccHHHHHHhh-h------cCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHH
Q 013839 245 LDKDAQAIRIFL-E------DEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGIL 316 (435)
Q Consensus 245 ~~~~~~~~~~~~-~------~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~ 316 (435)
. ....++..+. + ..+++|+++||||.| +++|||+||+++...+++ +++.+.+... ...+++.++|.
T Consensus 260 ~-~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~----li~~~~~~~~-~~~~~~~~~Q~ 333 (407)
T PLN02368 260 E-RPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----TVEEIYKVAS-IALSPNVSGQI 333 (407)
T ss_pred C-CCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHH----HHHHHHHHhc-ccCCCCcHHHH
Confidence 2 1122333221 1 134899999999998 899999999962113777 8888887643 34578999999
Q ss_pred HHHHHhCChh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--CHHHHHH
Q 013839 317 LVATILSDPN----LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--TPYQVDR 384 (435)
Q Consensus 317 ~~~~~l~~~~----l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ 384 (435)
++..+|..+. ..+.|.++.+++++.|+++++.+.+.|++++. +.+..|+|+||+|+++ ....+++
T Consensus 334 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g---~~~~~P~Gafy~~~~i~lp~~~~~~ 404 (407)
T PLN02368 334 FMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKN---VVCNFTEGAMYSFPQIKLPPKAIEA 404 (407)
T ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---eEeCCCCeeeEeccCCCCCHHHHHH
Confidence 9999997542 11123455567889999999999999998742 6688899999999865 4444443
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=350.23 Aligned_cols=350 Identities=15% Similarity=0.132 Sum_probs=272.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+.++|+|+.|.|... ..++ ++.+.+++..........|++..|.++||+++++++...++..+++++|. +|+|++
T Consensus 28 ~~~~~i~l~~g~p~~~-~~~p-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--it~G~~ 103 (398)
T PRK08363 28 KGIKVIRLNIGDPVKF-DFQP-PEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVR--VTAAVT 103 (398)
T ss_pred cCCCeEEEeCCCCCcC-CCCC-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEE--EeCCHH
Confidence 5578999999997311 2233 34444444443322245699899999999999999854444446688998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +.+++.+||+|++++|+|..+...++..|.+++.++..+++++.+|++++++.+. ++++++++++||||
T Consensus 104 ~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NP 178 (398)
T PRK08363 104 EALQLI--FGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT---EKTKAIAVINPNNP 178 (398)
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCC---cceEEEEEECCCCC
Confidence 999988 6777899999999999999999999999998888833245667899999999886 56789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|+++++++|+||+|.++.+++ ...++..+. ...++++++||||.|+++|+|+||+++ .+
T Consensus 179 tG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~---~~~~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~~~~-~~ 253 (398)
T PRK08363 179 TGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG---KHVSPGSLT-KDVPVIVMNGLSKVYFATGWRLGYIYF-VD 253 (398)
T ss_pred CCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC---cccCHHHcC-cCCcEEEEecchhccCCccceEEEEEE-eC
Confidence 9999999999999999999999999999999988753 122333332 245799999999999999999999973 23
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++..+.+.+.+..... ...+++.++|.++..+|.+.. +++++.+++++++++.+.+.|++++ ++.+..+
T Consensus 254 ~~~~~~~l~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~------~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~p 323 (398)
T PRK08363 254 PEGKLAEVREAIDKLAR-IRLCPNTPAQFAAIAGLTGPM------DYLEEYMKKLKERRDYIYKRLNEIP---GISTTKP 323 (398)
T ss_pred cHHHHHHHHHHHHHHhc-ccccCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHhcCC---CCEecCC
Confidence 56633334443333221 234688899999999887532 6788889999999999999998763 2567788
Q ss_pred CcceeEecCC-------CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 368 QLGMFCFSGL-------TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 368 ~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++|+|+|+.+ +.+++..+++++||.+.||. ||+++. +++++++++++|++++++
T Consensus 324 ~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 324 QGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred CeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 9999999643 24456777788999999872 999975 788899999999998765
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=347.85 Aligned_cols=340 Identities=12% Similarity=0.078 Sum_probs=260.9
Q ss_pred hHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCe
Q 013839 39 GVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRS 118 (435)
Q Consensus 39 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v 118 (435)
.+..+.....+.++|+|+.|+| +. +.+ +.+.+++...... ...|+++.|.++||+++++++...++.++++++|
T Consensus 13 ~~~~~~~~~~~~~~i~l~~~~p-~~---~~~-~~~~~a~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I 86 (374)
T PRK05839 13 ELLKEITPNKEYKGLDLTIGEP-QF---ETP-KFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELKENEL 86 (374)
T ss_pred HHHHHhhhcCCCCeEEcCCCCC-CC---CCC-HHHHHHHHHHhhc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceE
Confidence 4444443322559999999996 32 233 4445444443333 5679999999999999999985444444668999
Q ss_pred eeEecCCchhHHHHHHHHHHHh--CCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 119 AGVQALSGTGACRLFAEFQRRF--HPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 119 ~~~~t~gg~~a~~~~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+ +|+|+++++.++ +..++ .+||.|+++.|+|+.|...++..|++++.+++..++++.+|+++. .+ +++
T Consensus 87 ~--it~G~~~al~~~--~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~----~~~ 156 (374)
T PRK05839 87 I--PTFGTREVLFNF--PQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL----QEV 156 (374)
T ss_pred E--EecCcHHHHHHH--HHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hh----ccc
Confidence 9 999999998877 44443 478999999999999999999999999999984344566665543 22 357
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-----hhcCCeEEEEeccccc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-----LEDEHLIGCAQSYAKS 271 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~s~SK~ 271 (435)
++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++ ..+++... ....+++|+++||||.
T Consensus 157 k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~---~~~s~~~~~~~~~~~~~~~vi~~~SfSK~ 233 (374)
T PRK05839 157 DLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT---PPPSLLEASILVGNESFKNVLVINSISKR 233 (374)
T ss_pred cEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC---CCCCHhhhhcccCccccCcEEEEeccccc
Confidence 899999999999999999999999999999999999999999986542 12222221 1233689999999999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQ 351 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
|+++|+|+||+++ +++ +++++.+.......+.+.+.|.++..++.+. +++++.+++++++++.+.+
T Consensus 234 ~~~~GlRiG~ii~---~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~ 299 (374)
T PRK05839 234 SSAPGLRSGFIAG---DAS----ILKKYKAYRTYLGCASPLPLQKAAAVAWLDD-------EHAEFFRNIYAKNLKLARE 299 (374)
T ss_pred cCCccceeEEEec---CHH----HHHHHHHHHhhcCCCCChHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHH
Confidence 9999999999974 788 8888877665555678888999988777653 6677788889999888776
Q ss_pred HHHhhCCCCCccccccCcceeEecCC--CHHHHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHH
Q 013839 352 NLEKLGSSLNWEHITNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~ 417 (435)
.| + +. .+++|+|+|+.+ +.+++..+++++||.+.|| + ||+++. +++++.+++++|+
T Consensus 300 ~l---~----~~--~p~gg~fi~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~ 369 (374)
T PRK05839 300 IL---G----IT--IPPATFYVWLPVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIK 369 (374)
T ss_pred hc---C----CC--CCCeeEEEEEeCCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 54 3 22 578999999987 3455677766799999985 1 999976 7889999999999
Q ss_pred HHHH
Q 013839 418 EVTR 421 (435)
Q Consensus 418 ~~l~ 421 (435)
++++
T Consensus 370 ~~l~ 373 (374)
T PRK05839 370 TYLE 373 (374)
T ss_pred HHhh
Confidence 8874
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=344.18 Aligned_cols=329 Identities=16% Similarity=0.129 Sum_probs=261.8
Q ss_pred eeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchhHH
Q 013839 52 KINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTGAC 130 (435)
Q Consensus 52 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~a~ 130 (435)
+++|+.|.| +. +.+ +.+.+++.+.... ..+|+++.|.++||+++++++...++.+++++ +|+ +|+|+++++
T Consensus 2 ~~~~~~g~p-~~---~~~-~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Ii--it~Gs~~ai 73 (350)
T TIGR03537 2 LFDFGTGDP-KE---PTP-PFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVL--PSAGSKEAI 73 (350)
T ss_pred eEeccCCCC-CC---CCC-HHHHHHHHHHHhc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE--EcCChHHHH
Confidence 689999996 32 333 3444444444333 56799999999999999999854433344566 898 999999999
Q ss_pred HHHHHHHHHhCCC---CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 131 RLFAEFQRRFHPE---SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 131 ~~~~~~~~~~~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
.++ +..++++| |+|++++|+|+.+...++..|++++.+++.+++++.+|++++++++. ++++++++++||||
T Consensus 74 ~~~--~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NP 148 (350)
T TIGR03537 74 FHF--PLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL---EETKIVWINYPHNP 148 (350)
T ss_pred HHH--HHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh---hccEEEEEeCCCCC
Confidence 888 66677877 69999999999999999999999999998434567899999999887 57899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++|++++|+||+|.++.+++. ..++... ..+++++++|+||.+|++|+|+||+++
T Consensus 149 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~--- 220 (350)
T TIGR03537 149 TGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP---PHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAG--- 220 (350)
T ss_pred cCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC---CCchhhc--CcCCEEEEeecccccCCccccceeeec---
Confidence 99999999999999999999999999999998876531 1222222 246899999999999999999999963
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.++........+.+.+.|.++..++.+. +++++.+++++++++.+.+.|+..+ +.+..+
T Consensus 221 ~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~r~~l~~~~~~~~~~l~~~g----~~~~~~ 285 (350)
T TIGR03537 221 DEK----LISFLRKLRANFGVASPDFVQAAAKAAWSDD-------NHVLERRKIFKRKRDLFIEFFNKVG----LEYLYP 285 (350)
T ss_pred CHH----HHHHHHHHHHhhccCCCHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHHHHHHHHHCC----CcccCC
Confidence 787 7777877665555566667888887777653 5567788899999999999998876 456788
Q ss_pred CcceeEecCC----CHH-HHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHH
Q 013839 368 QLGMFCFSGL----TPY-QVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 368 ~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~ 418 (435)
++|+|+|+.+ +.+ +++.+ .++||.+.||. ||+++. +++++++++++|++
T Consensus 286 ~g~~~~~~~~~~~~~~~~l~~~L-~~~gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 286 DATFYLWVKVPSGIDAKDYALRL-LENGIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER 349 (350)
T ss_pred CeEEEEEEECCCCCCHHHHHHHH-HHCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence 8999999865 333 44555 45899999861 999974 78889999988865
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=350.94 Aligned_cols=341 Identities=15% Similarity=0.088 Sum_probs=258.1
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCC--CccccCC--CeeeEecCC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKD--SDVVKEG--RSAGVQALS 125 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~~~~--~v~~~~t~g 125 (435)
+++|+|+.|+| +. + +++.+.++...+. + . +|+++.|.+++++++++.+.... .....++ +|+ +|.|
T Consensus 94 ~~~i~l~~g~p-~~---~-~~~~~~~~~~~~~-~-~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~--it~G 163 (521)
T TIGR03801 94 RDIISYVIDQL-GF---D-PDAFLYEMCDGII-G-D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLF--AVEG 163 (521)
T ss_pred HHHHhhcCCCC-CC---C-CCHHHHHHHHHhh-c-C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEE--EeCC
Confidence 46799999997 44 3 3466666666653 2 2 49888888899988886543321 1111233 788 9999
Q ss_pred chhHHHHHHHHHH-----HhCCCCEEEEcCCCChhhHHHHhhC--CCCeeeeeecCCCC-----CCcChHhHHHHhhcCC
Q 013839 126 GTGACRLFAEFQR-----RFHPESHIYFPDPTWSNHHNIWRDA--QIPERTYHYYDPDS-----KSLDFAALMDDIKNAP 193 (435)
Q Consensus 126 g~~a~~~~~~~~~-----~~~~gd~Vlv~~p~y~~~~~~~~~~--g~~~~~v~~~~~~~-----~~~d~e~l~~~i~~~~ 193 (435)
+++|+..+ +.+ ++.|||+|++++|+|+.|...++.. |++++.++...+++ |.+|++++++++.
T Consensus 164 at~al~~~--~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~--- 238 (521)
T TIGR03801 164 GTAAMCYI--FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD--- 238 (521)
T ss_pred HHHHHHHH--HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC---
Confidence 99999888 443 6889999999999999999987765 67777777632222 8899999998776
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
+++++++++|||||||.+++.+++++|+++|++| +++||+||+|..|.+. ..++... ..+++|+++||||.
T Consensus 239 ~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~sl~~~--~~~~vI~v~SfSK~ 311 (521)
T TIGR03801 239 PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-----FRSLFAE--LPYNTIGVYSFSKY 311 (521)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-----ccchhhh--CCCCEEEEEcchhh
Confidence 6889999999999999999999999999999987 9999999999988752 1233222 34689999999999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHH--------------------------------HHHHHhhccccCCChhHHH---
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRS--------------------------------QIQQIARAMYGSPPVHGIL--- 316 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~--------------------------------~l~~~~~~~~~~~~~~~q~--- 316 (435)
||++|||+||+++ .+++..+++++ ..++.....+.+.+.+.|.
T Consensus 312 fg~~G~RlG~i~~--~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~a 389 (521)
T TIGR03801 312 FGATGWRLGTIAL--HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA 389 (521)
T ss_pred ccCchhhhhhhhc--CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 9999999999963 33333333332 2245555667778888887
Q ss_pred --HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------------
Q 013839 317 --LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------------- 378 (435)
Q Consensus 317 --~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------------- 378 (435)
++.+++...+ .+.++.++.++++++.+.+.| |. .+...+++++||+|+++.
T Consensus 390 l~a~~all~~~~------~y~~~~~~~~~~R~~~l~~~L---g~--~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~ 458 (521)
T TIGR03801 390 LFSLFALMDKEN------AYKAETKDICRRREKLLFRGL---GL--PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLK 458 (521)
T ss_pred HHHHHHHhccch------hHHHHHHHHHHHHHHHHHHhc---CC--CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHh
Confidence 3344555432 678888999999999998888 32 133467889999999652
Q ss_pred -----HHHHHHHhhhccEEEeCCC---------cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 379 -----PYQVDRLAKEFHIYMTQDG---------RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 379 -----~~~~~~ll~~~gI~i~pgg---------Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+++.+|+++.||.+.||. |+|+++.+++++.++.++|++++++..+
T Consensus 459 ~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 459 KNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred ccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2466889999999999982 9999877889999999999999976553
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=344.33 Aligned_cols=343 Identities=17% Similarity=0.159 Sum_probs=270.4
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+.++++|+.|.| +. +.+ +.+.+++...... ...|++..|.+++|+++++++. ..+..+++++|. +|+|+++
T Consensus 29 ~~~~i~l~~~~~-~~---~~~-~~~~~a~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~--~t~G~~~ 99 (397)
T PRK07568 29 GIKVYHLNIGQP-DI---KTP-EVFFEAIKNYDEE-VLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEIL--ITNGGSE 99 (397)
T ss_pred CCCEEEecCCCC-CC---CCC-HHHHHHHHHHhcC-CcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEE--EcCChHH
Confidence 457999999996 32 223 3444444444332 5679999999999999999985 333345578988 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCC-cChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKS-LDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~-~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
++.++ +..++.+||+|++++|+|..+...++..|++++.+++.+++++. .+++++++.+. ++++++++++||||
T Consensus 100 al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NP 174 (397)
T PRK07568 100 AILFA--MMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT---PKTKAILISNPGNP 174 (397)
T ss_pred HHHHH--HHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC---ccceEEEEECCCCC
Confidence 99988 66668899999999999999999899999999999873233344 35789988886 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|+++++++|+|++|.++.+++. ...++..+.+..+++++++||||.+|++|+|+||++ ++
T Consensus 175 tG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~--~~ 250 (397)
T PRK07568 175 TGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL--KYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLI--SK 250 (397)
T ss_pred CCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC--CccChhhcCCCcCCEEEEecchhhccCCCcceEEEe--cC
Confidence 99999999999999999999999999999999987641 233444444445789999999999999999999996 43
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.... ..+++.+.|.++..+|.... +++++.++.++++++.+.+.|++++. +.+..+
T Consensus 251 ~~~----~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~p 316 (397)
T PRK07568 251 NKE----LIAAAMKLCQA-RLSPPTLEQIGAAALLDTPE------SYFDEVREEYKKRRDILYEELNKIPG---VVCEKP 316 (397)
T ss_pred CHH----HHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCH------HHHHHHHHHHHHHHHHHHHHHhcCCC---ceecCC
Confidence 567 66666554332 35788999999999997643 67888899999999999999988742 556778
Q ss_pred CcceeEecCC---CH-HHHHHHhhh-----ccEEEeCC---------C----cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 368 QLGMFCFSGL---TP-YQVDRLAKE-----FHIYMTQD---------G----RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 368 ~~g~~~~~~~---~~-~~~~~ll~~-----~gI~i~pg---------g----Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++|+|+|+.+ +. ++...++++ +||.+.|| + ||+|+. +++++++++++|++++++..
T Consensus 317 ~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 317 KGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAMEILKEALEKYN 394 (397)
T ss_pred CcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHhh
Confidence 9999999876 23 445666553 69999985 1 999975 78999999999999887643
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=340.40 Aligned_cols=345 Identities=15% Similarity=0.145 Sum_probs=264.3
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHh
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
+.++++..+...+..+.....+ .+.++|+|+.|+| +. +. ++.+.+++..... ..+|+++.|.+++|++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~p-~~---~~-~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~ 74 (364)
T PRK07865 3 VSARLPDFPWDTLAPAKATAAA-HPDGIVDLSVGTP-VD---PV-PPVIQEALAAAAD--APGYPTTAGTPELREAIVGW 74 (364)
T ss_pred ccccCCCccHHHHHHHHHHHHh-cCCCEEEcCCCCC-CC---CC-CHHHHHHHHHHHh--hCCCCCccCCHHHHHHHHHH
Confidence 4566666666656555444433 4467899999996 32 22 3444444444332 34699999999999999999
Q ss_pred HcCCCCcc-ccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcCh
Q 013839 105 VYGKDSDV-VKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDF 182 (435)
Q Consensus 105 l~~~~~~~-~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 182 (435)
+....+.+ +++++|+ +|+|+++++.++ +..+ +.+||+|++++|+|+.+...++..|++++.++. +
T Consensus 75 l~~~~~~~~~~~~~I~--it~G~~~~i~~~--~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~ 141 (364)
T PRK07865 75 LARRRGVTGLDPAAVL--PVIGSKELVAWL--PTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------L 141 (364)
T ss_pred HHHHcCCCCCCcccEE--EccChHHHHHHH--HHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------h
Confidence 95443333 5588999 999999999887 4445 689999999999999999999999998887742 2
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH-h-hhcCC
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI-F-LEDEH 260 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~-~-~~~~~ 260 (435)
+++.. .+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ....+.. . ....+
T Consensus 142 ~~l~~------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~ 213 (364)
T PRK07865 142 TELGP------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILDPRVCGGDHT 213 (364)
T ss_pred hhCCc------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCccccccccCCccc
Confidence 22211 4578999999999999999999999999999999999999999999887531 1111111 0 11246
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++++++||||.++++|+|+||+++ +++ +++.++........+++.+.|.++..+|.+. ++.++.++
T Consensus 214 ~~i~~~S~SK~~~~~GlRiG~i~~---~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~ 279 (364)
T PRK07865 214 GLLAVHSLSKQSNLAGYRAGFVAG---DPA----LVAELLEVRKHAGMMVPAPVQAAMVAALGDD-------AHVREQRE 279 (364)
T ss_pred eEEEEeechhccCCCceeeEEEec---CHH----HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH-------HHHHHHHH
Confidence 899999999999999999999963 888 8888877665555678899999999999763 56778888
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCc
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGN 408 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~ 408 (435)
.++++++.+.+.|++.| +.+..+++|+|+|+.+ +...+.+.++++||.+.||. ||+++. ++++
T Consensus 280 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~ 354 (364)
T PRK07865 280 RYARRRAVLRPALEAAG----FRVDHSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA-TDER 354 (364)
T ss_pred HHHHHHHHHHHHHHHcC----CcccCCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC-CHHH
Confidence 99999999999999876 4566788999999976 33444445577999999861 999977 7889
Q ss_pred HHHHHHHHH
Q 013839 409 VNYLANAIH 417 (435)
Q Consensus 409 i~~~~~~l~ 417 (435)
+++++++|+
T Consensus 355 ~~~~~~~l~ 363 (364)
T PRK07865 355 IAAAVERLA 363 (364)
T ss_pred HHHHHHHhh
Confidence 999998875
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=346.68 Aligned_cols=344 Identities=22% Similarity=0.262 Sum_probs=275.7
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHH-HhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchh
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEA-KIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTG 128 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~ 128 (435)
++|+|+.|.+......+.++..++++.+ .........|+++.|.++||+++++++...++.+.+++ +++ +++|+.+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~--~~~G~~~ 79 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANIL--VTSGAQA 79 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEE--EESHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEE--Eeccccc
Confidence 6899999997444344556666666655 33334477899999999999999999964444445566 777 7777777
Q ss_pred HHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-C--CcEEEEeCCC
Q 013839 129 ACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-D--SSFFLLHPSA 204 (435)
Q Consensus 129 a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~--~~~~v~~~~p 204 (435)
++.++ +..+ ..+||+|++++|+|+.+...++..|++++.+++..++++.+|+++|++.+++.+ + +++++++++|
T Consensus 80 ~~~~~--~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p 157 (363)
T PF00155_consen 80 ALFLL--LRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNP 157 (363)
T ss_dssp HHHHH--HHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESS
T ss_pred chhhh--hhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccc
Confidence 77666 4444 569999999999999999999999999999998656778999999999998531 1 4689999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
|||||.+++.+++++|+++|++|++++|+||+|.++.+++. +..+.....+...++++++|+||.||++|+|+||+++
T Consensus 158 ~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~ 235 (363)
T PF00155_consen 158 NNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA 235 (363)
T ss_dssp BTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE
T ss_pred ccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCcccccccccccceeeeeccccccccccccccccc
Confidence 99999999999999999999999999999999999998752 3334333345555699999999999999999999974
Q ss_pred EecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
+++ +++.+++....... +.+.|.++..++.+... ..+++++.+++++++++.+.+.|++.+ +.+
T Consensus 236 ---~~~----~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~l~~~L~~~~----~~~ 299 (363)
T PF00155_consen 236 ---PPE----LIERLRRFQRSGLS--SSPMQAAAAAALSDPEL---VEKWLEELRERLRENRDLLREALEEIG----ITV 299 (363)
T ss_dssp ---EHH----HHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTT----SEE
T ss_pred ---hhh----hhhhhhhccccccc--cchhhHHHHHhhhcccc---cccccccchhhHHHHHHHHHHHHHHhh----hhe
Confidence 788 88888887654333 88889888888876642 223788999999999999999999886 678
Q ss_pred cccCcceeEecCCCH----HHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHH
Q 013839 365 ITNQLGMFCFSGLTP----YQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 365 ~~~~~g~~~~~~~~~----~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l 416 (435)
..+++|+|.|+.++. ++.+.|+++.||.+.||. |++++..+++++++++++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 300 LPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 888899999997753 456777776699999972 9999556899999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=343.59 Aligned_cols=346 Identities=16% Similarity=0.148 Sum_probs=254.9
Q ss_pred hHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC----CCCCCCCCCcccHHHHHHHHHhHcCCCCccc
Q 013839 39 GVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG----SEFLESISASVSTKMVEESVKLVYGKDSDVV 113 (435)
Q Consensus 39 ~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (435)
.....+.. .+++++|+|+.|+| +. ++++.+.+.+...+.. ....+|.|..|.++||+++++++++.. +
T Consensus 21 ~~~~~~~~~~~~~~~i~l~~~~~-~~---~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~---~ 93 (402)
T TIGR03542 21 RRVNEFRKKHPSADIIRLGIGDT-TQ---PLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGR---I 93 (402)
T ss_pred HHHHHHHhccCCCCeEEcCCCCC-CC---CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcC---C
Confidence 34444432 24578999999996 22 2333333322222221 123569899999999999999874433 4
Q ss_pred cCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC-----------CeeeeeecCCCCCCcCh
Q 013839 114 KEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI-----------PERTYHYYDPDSKSLDF 182 (435)
Q Consensus 114 ~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d~ 182 (435)
++++|+ +|+|+++++.++ ..++.+||+|++++|+|..|...++..|+ +++.+++.+++++.+|+
T Consensus 94 ~~d~I~--it~Ga~~al~~l---~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 168 (402)
T TIGR03542 94 DPEEIF--ISDGAKCDVFRL---QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDL 168 (402)
T ss_pred CHHHEE--ECCCcHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCc
Confidence 478999 999999998765 34568999999999999999999999999 88888873233444443
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+. . .+++++++++||||||.+++.+++++|+++|++|+++||+||+|.+|.+++. ...++..+....+++
T Consensus 169 ~~-----~---~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~v 238 (402)
T TIGR03542 169 PE-----E---PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS--LPHSIFEIPGAKECA 238 (402)
T ss_pred cc-----c---CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC--CCcchhhCCCCcccE
Confidence 21 1 4678999999999999999999999999999999999999999999987531 122333333334689
Q ss_pred EEEecccccccccCCcccEEEEEecChhHH----HHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQA----AAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIM 338 (435)
Q Consensus 263 i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~ 338 (435)
|+++||||.||+||+|+||+++ +++.. ..+...+.........+++.++|.++..++.+.. + ++..+.
T Consensus 239 i~~~SfSK~~g~pGlRiG~~i~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~----~-~~~~~~ 310 (402)
T TIGR03542 239 IEFRSFSKTAGFTGVRLGWTVV---PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEG----L-QPILEA 310 (402)
T ss_pred EEEecCccccCCCCcceEEEEe---cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcc----h-hHHHHH
Confidence 9999999999999999999974 76621 0111333332223345688899999888887643 1 345566
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----C-HHHHHHHhhhccEEEeCCC----------cEEecc
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----T-PYQVDRLAKEFHIYMTQDG----------RISMAG 403 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~-~~~~~~ll~~~gI~i~pgg----------Ris~~~ 403 (435)
++.++++++.+.+.|++.+ +.+..+.+|+|+|+.+ + .+++..+++++||.+.||. ||+++.
T Consensus 311 ~~~~~~~~~~~~~~L~~~~----~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~ 386 (402)
T TIGR03542 311 ISYYMENARILRKALEAAG----FKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG 386 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC----ceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 7889999999999998875 4566777899999976 3 3456777777899999971 999876
Q ss_pred CCCCcHHHHHHHHHHH
Q 013839 404 VTTGNVNYLANAIHEV 419 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~ 419 (435)
+++++++++++|+++
T Consensus 387 -~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 387 -KRENIVEACERIKEA 401 (402)
T ss_pred -CHHHHHHHHHHHHhh
Confidence 889999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=333.21 Aligned_cols=333 Identities=14% Similarity=0.118 Sum_probs=252.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHcCCC--CccccCCCeeeEecCCc
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVYGKD--SDVVKEGRSAGVQALSG 126 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~~~~~v~~~~t~gg 126 (435)
+..++|+.|+| +. ++++...+.+.+.+..+ ....|++ .|.++||++|++++.... +..+++++|+ +|+|+
T Consensus 28 ~~~~~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~--it~Ga 100 (374)
T PRK02610 28 IQLDRLDTNEF-PY---DLPPDLKQKLAWLYQQGIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANIS--VGNGS 100 (374)
T ss_pred cceeEecCCCC-CC---CCCHHHHHHHHHHHhhcccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEE--EcCCh
Confidence 45899999995 22 44444544444444432 1345855 799999999999995443 2345688999 99999
Q ss_pred hhHHHHHHHHHHHhCCCC-EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEEeCCC
Q 013839 127 TGACRLFAEFQRRFHPES-HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLLHPSA 204 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p 204 (435)
++++.++ +.+++.+|| +|++++|+|..|...++..|++++.+++ +++++++|++++++++.+. ..+++++++++|
T Consensus 101 ~~al~~~--~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P 177 (374)
T PRK02610 101 DELIRSL--LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR-DPETFEIDLAAAQSAIEQTQNPPVRVVFVVHP 177 (374)
T ss_pred HHHHHHH--HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC-CcccCCCCHHHHHHHHHhhcCCCceEEEEeCC
Confidence 9999877 566677886 8999999999999999999999999987 4556899999999988631 136899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
|||||.+++.++++++.++| ++++||+||+|.+|.+.. .+..+ ...+++|+++||||.+|++|+|+||+++
T Consensus 178 ~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~------~~~~~-~~~~~~ivi~SfSK~~g~~GlRiG~~v~ 248 (374)
T PRK02610 178 NSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT------LVGEL-AQHPNWVILRTFSKAFRLAAHRVGYAIG 248 (374)
T ss_pred CCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc------hHHHH-hcCCCEEEEEecchhccCcccceeeeec
Confidence 99999999999999999876 489999999999886421 12222 2235788999999999999999999974
Q ss_pred EecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
+++ +++.+.+... ..+.+.++|.++..++.+.+ .+.+..++.++ .++.+.+.|+.++. +.+
T Consensus 249 ---~~~----l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~-~r~~l~~~L~~~~~---~~~ 309 (374)
T PRK02610 249 ---HPE----LIAVLEKVRL--PYNLPSFSQLAAQLALEHRQ------ELLAAIPEILQ-ERDRLYQALQELPQ---LRV 309 (374)
T ss_pred ---CHH----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCHH------HHHHHHHHHHH-HHHHHHHHHHhCCC---cEe
Confidence 888 8888877542 34678899999999987642 44555555444 46778888877632 443
Q ss_pred cccCcceeEecCC----CHHHHHHHhhhccEEEeCCC---cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 365 ITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG---RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 365 ~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg---Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++|+|+|+.+ +.+.+.+.++++||.+.++. ||+++. .+++++++++|+++++.+
T Consensus 310 -~p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~~~~~lRls~~~--~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 310 -WPSAANFLYLRLSQDAALAALHQALKAQGTLVRHTGGGLRITIGT--PEENQRTLERLQAALTQL 372 (374)
T ss_pred -CCCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEeCCCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence 478899999865 33445444577999998753 999964 467899999999988654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=332.95 Aligned_cols=330 Identities=9% Similarity=0.052 Sum_probs=257.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+++|+|+.|++ .+++++.+++.+...+.. ...| |..|.++||+++++++ +. ++++|+ +++|++
T Consensus 27 ~~~~~i~l~~nen----~~~~~~~v~~a~~~~~~~--~~~Y-p~~g~~~Lr~aia~~~-~~-----~~~~I~--vt~Gs~ 91 (366)
T PRK01533 27 GDHSFVKLASNEN----PFGCSPRVLDELQKSWLD--HALY-PDGGATTLRQTIANKL-HV-----KMEQVL--CGSGLD 91 (366)
T ss_pred CCCceEEeCCCCC----CCCCCHHHHHHHHHHHHh--cCcC-CCCCHHHHHHHHHHHh-CC-----CcceEE--ECCCHH
Confidence 3468999999994 224444454444443322 2336 5579999999999998 32 277998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +.+++.+||+|++++|+|+.|...++..|++++.+++ + ++++|++++++++. ++++++++++||||
T Consensus 92 e~i~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~-~--~~~~d~~~l~~~~~---~~~~~v~i~~P~NP 163 (366)
T PRK01533 92 EVIQII--SRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVAL-N--NGVYDLDEISSVVD---NDTKIVWICNPNNP 163 (366)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeec-C--CCCcCHHHHHHHhC---cCCcEEEEeCCCCC
Confidence 999988 6777899999999999999999999999999999987 2 34799999999886 56789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++++ ++|+||+|.+|.+.+. ....+ ...+..+++|+++||||.||++|+|+||+++
T Consensus 164 TG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~--~~~~~-~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~--- 236 (366)
T PRK01533 164 TGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD--FPETL-PLLEKHKNILVLRTFSKAYGLASFRVGYAVG--- 236 (366)
T ss_pred CCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc--Ccchh-HHhccCCCEEEEeCchHHhcChHHHHhHHhC---
Confidence 999999999999999999877 5677999988876421 11222 2234457899999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+... ..+++.++|.++..+|.+. ++.++.++.++++++.+.+.++.+| +.+.++
T Consensus 237 ~~~----~~~~l~~~~~--~~~~~~~~q~aa~~~l~~~-------~~~~~~~~~~~~~r~~~~~~l~~~g----~~~~~~ 299 (366)
T PRK01533 237 HEE----LIEKLNVVRL--PFNVSSLAQKAATIAFGDD-------EFIEEIVRVNTEGLRQYESFCKENE----IPFYQS 299 (366)
T ss_pred CHH----HHHHHHHhcC--CCCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CccCCC
Confidence 788 8888887542 3679999999999999764 5556666777777888888888776 446666
Q ss_pred CcceeEecCC-CHHHHHHHhhhccEEEeCCC---cEEeccCCCCcHHHHHHHHHHHHHhhhhhh
Q 013839 368 QLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG---RISMAGVTTGNVNYLANAIHEVTRSEQETA 427 (435)
Q Consensus 368 ~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---Ris~~~~~~e~i~~~~~~l~~~l~~~~~~~ 427 (435)
+ |.|+|+.+ +.+.+...|.++||.+++.. ||+++ +.+++++++++|+++++..+.++
T Consensus 300 ~-~nf~~~~~~~~~~~~~~l~~~GI~Vr~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~~~~ 360 (366)
T PRK01533 300 Q-TNFIFLPVENGGEIYEACAHAGFIIRPFPNGVRITVG--TREQNEGVISVLQQHFENKKRKS 360 (366)
T ss_pred c-CcEEEEeCCCHHHHHHHHHHCCcEEccCCCceEEeCC--CHHHHHHHHHHHHHHHHhccccc
Confidence 5 55888877 44455455567999999863 99985 46888999999999987655443
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=331.17 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=255.3
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV-VKE 115 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~ 115 (435)
+....++.++ ..+..++|+.|+| +. +. ++.+.+++..... ...|+++.|.++||+++++++....+.+ +.+
T Consensus 9 ~~~~~~~~~~-~~~~~i~l~~~~p-~~---~~-~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~ 80 (357)
T TIGR03539 9 LAPYKAKAAS-HPDGIVDLSVGTP-VD---PV-PPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLDP 80 (357)
T ss_pred HHHHHHHhhh-CCCCeEEccCCCC-CC---CC-CHHHHHHHHHHHh--hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCc
Confidence 4455555543 5578899999996 32 22 3344444444332 4569999999999999999995443433 568
Q ss_pred CCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
++|+ +|+|+++++.++ +..+ +.+||.|++++|+|+.+...++..|++++.++ +++.+. . +
T Consensus 81 ~~I~--it~G~~~~i~~~--~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~---~ 141 (357)
T TIGR03539 81 TAVL--PVIGTKELVAWL--PTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---P---V 141 (357)
T ss_pred CeEE--EccChHHHHHHH--HHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---c---c
Confidence 8998 999999998887 5545 68999999999999999988899999887763 222221 1 4
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH--hhhcCCeEEEEecccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI--FLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~s~SK~~ 272 (435)
+++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....+.. .....+++++++||||.|
T Consensus 142 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR--PVSILDPRVCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC--CccceecccCCCccccEEEEecccccc
Confidence 678999999999999999999999999999999999999999998887541 1111100 011235799999999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
+++|+|+||+++ +++ +++.+.+.......+++.+.|.++..+|.+. ++.+..++.++++++.+.+.
T Consensus 220 ~~~G~R~G~~i~---~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~ 285 (357)
T TIGR03539 220 NLAGYRAGFVAG---DPA----LVAELLTVRKHAGLMVPAPVQAAMVAALGDD-------GHVAEQKARYAARRAQLKPA 285 (357)
T ss_pred CCCceeEEEEec---CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999964 788 7777777665556678899999999999763 55677888999999999999
Q ss_pred HHhhCCCCCccccccCcceeEecCC--CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHH
Q 013839 353 LEKLGSSLNWEHITNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 353 l~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l 416 (435)
|++.| +.+..+++|+|+|+.+ +...+...++++||.+.||. ||+++. +++++++++++|
T Consensus 286 L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 286 LEKAG----FRIDHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred HHHcC----CCCcCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 98876 4577789999999965 44445445578999999861 999987 778888888876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=336.31 Aligned_cols=346 Identities=15% Similarity=0.087 Sum_probs=256.3
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-----CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-----EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
++++|+|+.|.| + ..+.+...++++....... ....|++..|.++||++|++++....+..+++++|+ +|
T Consensus 29 ~~~~i~l~~g~p-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~--it 103 (416)
T PRK09440 29 TPGAIMLGGGNP-A--HIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIA--LT 103 (416)
T ss_pred CCCceeccCCCC-C--ccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEE--Ec
Confidence 367899999997 2 2244455666666554321 235799999999999999999954434445689999 99
Q ss_pred CCchhHHHHHHHHHHHhC-----CCCEEEE-cCCCChhhHHHHhhCC----CCeeeeeecCCC--CCCcChHhHHHHhhc
Q 013839 124 LSGTGACRLFAEFQRRFH-----PESHIYF-PDPTWSNHHNIWRDAQ----IPERTYHYYDPD--SKSLDFAALMDDIKN 191 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~-----~gd~Vlv-~~p~y~~~~~~~~~~g----~~~~~v~~~~~~--~~~~d~e~l~~~i~~ 191 (435)
+|+++++.++ +..++. +||.|++ ++|+|+.|...+...+ .....+++ +++ ++++|++.|+ +.
T Consensus 104 ~Ga~~al~~~--~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~--~~- 177 (416)
T PRK09440 104 NGSQSAFFYL--FNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELL-PEGQFKYHVDFEHLH--ID- 177 (416)
T ss_pred cChHHHHHHH--HHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccc-cccccccCCCHHHcc--cC-
Confidence 9999999888 555664 6899999 6999999987554333 22222333 222 3689999987 33
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
.+++++++++||||||.+++.+++++|+++|++|+++||+||+|..+.... ...+. .....+++|+++||||.
T Consensus 178 --~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~---~~~~~--~~~~~~~vI~~~SfSK~ 250 (416)
T PRK09440 178 --EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI---IFSEA--TPLWNPNIILCMSLSKL 250 (416)
T ss_pred --CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc---chhhc--CccccCCeEEEeccccc
Confidence 567999999999999999999999999999999999999999997543210 01111 11124689999999996
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH-HHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI-MADRIQRKRTTLR 350 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~-~~~~~~~~~~~l~ 350 (435)
++||+|+||+++ +++ +++.+.........+++.+.|.++..++.++. |.++..+ .++.|+++++.+.
T Consensus 251 -~~pGlRiG~~i~---~~~----l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~r~~~~~ 318 (416)
T PRK09440 251 -GLPGVRCGIVIA---DEE----IIEALSNMNGIISLAPGRLGPAIAAEMIESGD----LLRLSETVIRPFYRQKVQLAI 318 (416)
T ss_pred -CCCcceEEEEeC---CHH----HHHHHHHHHHHhccCCCcHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999974 888 88888877665566789999999999998765 3344433 5777888888888
Q ss_pred HHHHhhCCCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeCC---------------C--cEEeccCCCCc
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD---------------G--RISMAGVTTGN 408 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg---------------g--Ris~~~~~~e~ 408 (435)
+.|.+.-....+.+..+++|+|+|+.+ +.+.+.+.++++||.+.|| + ||+++. ++++
T Consensus 319 ~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~~~~ 397 (416)
T PRK09440 319 ALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-DDEE 397 (416)
T ss_pred HHHHHhcccCCeEEecCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC-CHHH
Confidence 888764111124456788999999954 3344444456789999874 1 899976 7899
Q ss_pred HHHHHHHHHHHHHhhhh
Q 013839 409 VNYLANAIHEVTRSEQE 425 (435)
Q Consensus 409 i~~~~~~l~~~l~~~~~ 425 (435)
+++++++|++++++..+
T Consensus 398 l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 398 IEKGIAILAEEVEKAYA 414 (416)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999876543
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=304.42 Aligned_cols=345 Identities=13% Similarity=0.108 Sum_probs=288.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++++-|.+.+. |+ +.|++++++..+.+..+ ..+|+ .+..++.+++++|...++...++++.+. ++.|..-
T Consensus 24 ~~DvlPmWVADM-Df---~~pp~i~~Al~~rvdhG-vfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~--~~p~VVp 94 (388)
T COG1168 24 NEDVLPMWVADM-DF---PTPPEIIEALRERVDHG-VFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIV--FVPGVVP 94 (388)
T ss_pred CCCcceeeeecc-cC---CCCHHHHHHHHHHHhcC-CCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEE--EcCcchH
Confidence 479999999994 77 66777777666777666 66686 5677899999999988888888899988 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
++.++ +..+..|||.|++..|.|+++.......|.+++..|+..++ .|.+|+++|++++.+ .+.+++++||||||
T Consensus 95 gi~~~--I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCnPHNP 170 (388)
T COG1168 95 GISLA--IRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCNPHNP 170 (388)
T ss_pred hHHHH--HHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc--CCccEEEEeCCCCC
Confidence 99888 77788899999999999999999999999999999986333 377899999999984 45699999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
||.++++++|++|.++|++||+.||+||+++++.+.+ ..+.+...+ ....++.|.+.|.||+|.++|++++++++ .
T Consensus 171 ~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g--~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii-~ 247 (388)
T COG1168 171 TGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG--HKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIII-S 247 (388)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEeecccccccccC--CCccchhhcChhhhcceEEEeeccccccchhhhheeEEe-c
Confidence 9999999999999999999999999999999999976 233333332 23468999999999999999999999974 4
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++...++.+++. .....+++.++..|..++.++++ .++.+.++.++.+++++.+.+++.- | .+++..
T Consensus 248 -n~~lr~~~~~~l~---~~~~~~~n~lg~~A~~aAY~~G~------~WLd~L~~yl~~N~~~~~~~l~~~~-P-~v~v~~ 315 (388)
T COG1168 248 -NRELRAKFLKRLK---RNGLHGPSALGIIATEAAYNQGE------PWLDELLEYLKDNRDYVADFLNKHL-P-GVKVTE 315 (388)
T ss_pred -CHHHHHHHHHHHH---HhcCCCCchHHHHHHHHHHHhch------HHHHHHHHHHHHHHHHHHHHHHhhC-C-CcEEec
Confidence 7773344444444 34567899999999999999886 8889999999999999999997762 1 378899
Q ss_pred cCcceeEecCC-----C-HHHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGL-----T-PYQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~-----~-~~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
|+|.+-+|+++ + .+..+.++++.+|.+.+| | |++++. +.+-+++++++|+..++.
T Consensus 316 p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~al~~ 386 (388)
T COG1168 316 PQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRALKK 386 (388)
T ss_pred CCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHHHhc
Confidence 99999999965 5 355688889999999988 2 999987 889999999999988764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=330.30 Aligned_cols=338 Identities=16% Similarity=0.193 Sum_probs=262.6
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++++|+.|.| +. + +++.+.++...... .....|.+..|.+++|+++++++.......+.+++|+ +++|
T Consensus 32 ~~~~~~l~~g~p-~~---~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~--~t~G 104 (394)
T PRK06836 32 ADNVFDFSLGNP-SV---P-PPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIV--MTCG 104 (394)
T ss_pred CCCeEEecCcCC-CC---C-CCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEE--EeCC
Confidence 357899999986 32 2 33445555444331 1246798999999999999999954444445588998 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+++++.++ +..++.+||.|++++|+|..+...++..|++++.+++ +++++++|++++++++. ++++++++++||
T Consensus 105 ~~~al~~~--~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~ 178 (394)
T PRK06836 105 AAGALNVA--LKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT-DTDTFQPDLDALEAAIT---PKTKAVIINSPN 178 (394)
T ss_pred hHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec-CCccCcCCHHHHHhhcC---cCceEEEEeCCC
Confidence 99999888 6667899999999999999999999999999999998 45558899999999997 578899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHh------cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 206 NPTGVDPTEEQWREISYQFKV------KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~------~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
||||.+++.+++++|+++|++ |++++|+||+|.++.+++. ..+++ ....+++++++||||.+|+||+|+
T Consensus 179 NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~---~~~~~~~i~~~S~SK~~~~pGlRi 253 (394)
T PRK06836 179 NPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPYI---FKYYDNSIVVYSFSKSLSLPGERI 253 (394)
T ss_pred CCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCCh---HHccCcEEEEecchhhccCcceee
Confidence 999999999999999999999 8999999999999987631 11222 123468999999999999999999
Q ss_pred cEEEEEecChhHH--HHHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 280 GCLSILCVDSKQA--AAIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 280 G~~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
||+++ +++.. ..++..+....+. ...+++.+.|.++..++.+.. .+++++++++.+.+.|+++
T Consensus 254 G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----------~~~~~~~~r~~l~~~L~~~ 319 (394)
T PRK06836 254 GYIAV---NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV-----------DVSIYKRNRDLLYDGLTEL 319 (394)
T ss_pred EEEec---CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHHhC
Confidence 99964 55411 1122223222222 234678889999999987631 2456788889999999887
Q ss_pred CCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 357 GSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
| +.+..+++|+|+|+.+ +...+...++++||.+.||. ||+++. +++++++++++|++++++.
T Consensus 320 g----~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~-~~~~~~~~i~~l~~~l~~~ 392 (394)
T PRK06836 320 G----FECVKPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCV-DTETIERSLPAFEKLAKEY 392 (394)
T ss_pred C----CEeecCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 6 5677888999999865 34444445577899999982 999985 8999999999999998653
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=322.98 Aligned_cols=330 Identities=16% Similarity=0.194 Sum_probs=252.7
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG 116 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 116 (435)
+.+..+++.. .+.++|+|+.|++ +. .+++.+.+.+...+ .. ...|++ .|.++||+++++++ + ++++
T Consensus 18 ~~~~~~~~~~-~~~~~i~l~~~~~-~~---~~~~~~~~~~~~~~-~~-~~~Y~~-~~~~~lr~~ia~~~-~-----~~~~ 83 (357)
T PRK14809 18 IEEVARELGL-DPDDLVKLSSNEN-PH---GPSPAAVEAIREAA-ER-VHSYPK-ASHADLTAALADRW-D-----VSPE 83 (357)
T ss_pred HHHHHHHhCC-CccceeEecCCCC-CC---CCCHHHHHHHHHHH-hh-hhcCCC-CCHHHHHHHHHHHh-C-----CCcc
Confidence 4445555532 4568999999984 22 33334443333333 22 456865 78999999999998 3 2377
Q ss_pred CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+|+ +|+|+++++.++ +.+++++||.|++++|+|..+....+..|++++.+++..++++.+|++.+.+.. +++
T Consensus 84 ~I~--it~G~~~al~~~--~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~----~~~ 155 (357)
T PRK14809 84 QVW--LANGGDGALDYL--ARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY----DGE 155 (357)
T ss_pred eEE--ECCCHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh----cCC
Confidence 888 999999999888 666789999999999999989888888999999998843445778888776654 246
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
+++++++||||||.+++.+++++|++.|++ +++||+||+|.++.+.+ ..... .+..+++++++||||.||++|
T Consensus 156 k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~-----~~~~~-~~~~~~vi~~~SfSK~~~~~G 228 (357)
T PRK14809 156 RIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP-----SAVAL-VEERDDVAVLRTFSKAYGLAG 228 (357)
T ss_pred cEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc-----hhHHH-HhhCCCEEEEecchhHhcCcc
Confidence 888999999999999999999999999975 78999999999988642 12222 234578999999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||+++ +++ +++.+.+... ..+.+.++|.++..+|.+. +++++.++.++++++.+.+.|...
T Consensus 229 lRiG~~~~---~~~----~~~~~~~~~~--~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~ 292 (357)
T PRK14809 229 LRLGYAVV---PEE----WADAYARVNT--PFAASELACRAGLAALDDD-------EHVERTVETARWAREYIREELDAP 292 (357)
T ss_pred hhheeeec---CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999974 777 7777777542 4567888999998888753 567777888888998888888543
Q ss_pred CCCCCccccccCcceeEecCC-CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
. . +.+|+|+|+.+ +.+.+.+.++++||.+.||. ||+++ +.+++++++++|+++++
T Consensus 293 ~-------~-~~~g~f~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 293 T-------W-ESAGNFVLAEVGDASAVAEAAQERGVIVRDCTSFGLPECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred c-------C-CCCCCEEEEECCCHHHHHHHHHHCCEEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 2 1 46788999987 44444344577899999872 99985 46899999999998764
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=302.63 Aligned_cols=320 Identities=15% Similarity=0.204 Sum_probs=269.5
Q ss_pred CCCCCCCcccHHHHHHHHHhH--cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-
Q 013839 85 FLESISASVSTKMVEESVKLV--YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR- 161 (435)
Q Consensus 85 ~~~Y~~~~g~~~lr~~ia~~l--~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~- 161 (435)
...|.+..|++++|+++|+++ ........+|++++ +++|+|+|++.+ ...+..|||..++|.|.|+++..-++
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~V--v~~G~T~ane~l--~fcLadpgdafLvPtPyY~gfdrdl~~ 189 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVV--VTNGATSANETL--MFCLADPGDAFLVPTPYYPGFDRDLRW 189 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceE--EecccchhhHHH--HHHhcCCCceeeecCCCCCccccccee
Confidence 346888899999999999998 23334457799988 999999999988 56678899999999999999976666
Q ss_pred hCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC
Q 013839 162 DAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ 238 (435)
Q Consensus 162 ~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~ 238 (435)
..|.++++|.+...++++++++.+|.++.++ ..+.+.+++.||+||.|++++++++..++++|.++++.+|+||+|.
T Consensus 190 rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya 269 (471)
T KOG0256|consen 190 RTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYA 269 (471)
T ss_pred ccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhc
Confidence 4588999999977778999999999998764 4577999999999999999999999999999999999999999999
Q ss_pred CccCCCCcccHHHHHHhhh----cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhH
Q 013839 239 GFASGDLDKDAQAIRIFLE----DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHG 314 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (435)
.-.|+.. ...++.+... ..+++.++.|+||-+|+||+|+|.+. +.+++ ++++.++.++ +...++..
T Consensus 270 ~sVF~~~--~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviY--S~ne~----VvsaA~kmss--f~~vSs~t 339 (471)
T KOG0256|consen 270 GSVFDKS--EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIY--SNNED----VVSAATKMSS--FGLVSSQT 339 (471)
T ss_pred ccccCcc--CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEE--ecChH----HHHHHHHHhh--ccCCcHHH
Confidence 9999863 4445444432 35789999999999999999999994 66888 8888887653 56789999
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC---------CH--HHHH
Q 013839 315 ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---------TP--YQVD 383 (435)
Q Consensus 315 q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---------~~--~~~~ 383 (435)
|+.++.+|++..+ .++++++..+|++.+..++.+.|+.+|+ .+++.++|+|+|+++ .. ++.+
T Consensus 340 Q~~la~LLSD~~f---~~~yl~en~~Rl~~rh~~~~~gLk~lgI----~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~ 412 (471)
T KOG0256|consen 340 QYLLASLLSDEEF---TREYLRENNKRLRIRHRYIVEGLKALGI----PCLKSNAGLFCWVDLRKLLTSLTFEGELELWE 412 (471)
T ss_pred HHHHHHHhchHHH---HHHHHHHHHHHHHHHHHHHHhhHHhcCC----ceeecCCeeEEEEEhHHhcCcCChHHHHHHHH
Confidence 9999999998653 2367889999999999999999999995 599999999999976 12 2447
Q ss_pred HHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 384 RLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 384 ~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+++++-++-+.||. |++|+++.++.++-+++||+.++.+...
T Consensus 413 ~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~~ 464 (471)
T KOG0256|consen 413 RILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQVQ 464 (471)
T ss_pred HHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhhc
Confidence 77776699999993 9999997777777799999999985543
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=323.55 Aligned_cols=330 Identities=15% Similarity=0.124 Sum_probs=254.3
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
..|+|+.|++ +. ++++...+.+.+.+.. .....|++ .|.++||+++++++...++..+.+++|+ +|+|+++
T Consensus 27 ~~i~l~~~~~-~~---~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~--it~G~~~ 99 (368)
T PRK03317 27 VPVRLNTNEN-PY---PPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVW--AANGSNE 99 (368)
T ss_pred ceeEecCCCC-CC---CCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEE--ECCCHHH
Confidence 5799999995 22 3343343333333321 12456865 6899999999999965544456688999 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +.+++++||.|+++.|+|..|...++..|.+++.++. .+++++|++.+++++.+ .+++++++++|||||
T Consensus 100 ~l~~~--~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NPt 173 (368)
T PRK03317 100 ILQQL--LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAE--HRPDVVFLTSPNNPT 173 (368)
T ss_pred HHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCCC
Confidence 99998 7777899999999999999999999999999888876 44679999999999863 356788899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|++.| ++++|+||+|.+|.+.+. .+.. ...+..+++++++||||.+|++|+|+||+++ +
T Consensus 174 G~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~---~~~~-~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~---~ 243 (368)
T PRK03317 174 GTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT---PSAL-TLLPEYPRLVVSRTMSKAFAFAGGRLGYLAA---A 243 (368)
T ss_pred CCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC---cCHH-HHHHhCCCEEEEEechhhhccchhhhhhhhC---C
Confidence 9999999888888877 689999999999876531 1122 2223345899999999999999999999964 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+... ..+.+.++|.++..+|.+. +...+.+++++++++.+.+.|++.| +.+..++
T Consensus 244 ~~----~~~~l~~~~~--~~~~s~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 306 (368)
T PRK03317 244 PA----VVDALRLVRL--PYHLSAVTQAAARAALRHA-------DELLASVAALRAERDRVVAWLRELG----LRVAPSD 306 (368)
T ss_pred HH----HHHHHHhcCC--CCCCCHHHHHHHHHHhhCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEeCCCC
Confidence 88 8887776542 4568889999998998753 2233445667888888999998876 4567788
Q ss_pred cceeEecCC-CHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 369 LGMFCFSGL-TPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 369 ~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+++++|..+ +.+.+.+.+.++||.+.+.+ ||+++ +.++++.++++|+++++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~--~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 307 ANFVLFGRFADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG--TPEENDAFLAALAEVLAT 364 (368)
T ss_pred CcEEEEeccCCHHHHHHHHHHCCEEEEeCCCCCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 998888765 44445445567899999864 99984 567889999999888753
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=316.98 Aligned_cols=333 Identities=13% Similarity=0.125 Sum_probs=252.5
Q ss_pred hHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCe
Q 013839 39 GVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRS 118 (435)
Q Consensus 39 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v 118 (435)
...+++. ....++++|+.|.+ .. ..++.. .+++.+.... ...|++ .+.++||+++++++ +. ++++|
T Consensus 9 ~~~~~~~-~~~~~~~~l~~~~~-~~---~~p~~~-~~a~~~~~~~-~~~Y~~-~~~~~lr~~ia~~~-~~-----~~~~i 74 (354)
T PRK06358 9 EIAREKG-LTKNMILDFSANIN-PL---GVPESL-KQAITENLDK-LVEYPD-PDYLELRKRIASFE-QL-----DLENV 74 (354)
T ss_pred HHHHHhC-CCccceEEecCCCC-CC---CCCHHH-HHHHHHHHHh-hhcCCC-ccHHHHHHHHHHHh-CC-----ChhhE
Confidence 4444543 23456899999984 21 233333 3344433322 455866 46899999999998 32 37899
Q ss_pred eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEE
Q 013839 119 AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFF 198 (435)
Q Consensus 119 ~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ 198 (435)
+ +|+|+++++.++ +.+ +.+ ++|++++|+|+.|...++..|++++.+++..++++.+| +++.+.+. .++++
T Consensus 75 ~--it~Ga~~~l~~~--~~~-~~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~---~~~~~ 144 (354)
T PRK06358 75 I--LGNGATELIFNI--VKV-TKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK---EEIDL 144 (354)
T ss_pred E--ECCCHHHHHHHH--HHH-hCC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc---cCCCE
Confidence 8 999999999887 444 344 68999999999999999999999999998434457888 67666665 45788
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
+++++||||||.+++.+++++|+++|++|++++|+||+|.+|.+++. ..+.....+..+++|+++||||.+|++|+|
T Consensus 145 v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~---~~~~~~~~~~~~~vi~~~S~SK~~gl~G~R 221 (354)
T PRK06358 145 VFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE---TISMINYLENFKNLIIIRAFTKFFAIPGLR 221 (354)
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc---chhHHHhccCCCCEEEEEechhhccCcchh
Confidence 88999999999999999999999999999999999999999987641 223222234457899999999999999999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||++ +++++ +++.+.+... ..+.+.++|.++..++.+. +++++.++.++++++.+.+.|++++.
T Consensus 222 iG~lv--~~~~~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~~ 286 (354)
T PRK06358 222 LGYGL--TSNKN----LAEKLLQMRE--PWSINTFADLAGQTLLDDK-------EYIKKTIQWIKEEKDFLYNGLSEFKG 286 (354)
T ss_pred heeee--cCCHH----HHHHHHHhCC--CCcchHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99996 33466 7777776543 3567889999999999753 56778888899999999999988632
Q ss_pred CCCccccccCcceeEecCCC--HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGLT--PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~~--~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+.+..++++ |+|+.+. .++.+.+ .++||.+.||. |++++ +.++.++++++|++++
T Consensus 287 ---~~~~~~~g~-f~~~~~~~~~~~~~~l-~~~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 287 ---IKVYKPSVN-FIFFKLEKPIDLRKEL-LKKGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred ---cEEcCCcce-EEEEEcCchHHHHHHH-HHCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 556666655 8888773 3444555 46899999862 89984 5678899999988764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=318.65 Aligned_cols=325 Identities=16% Similarity=0.152 Sum_probs=250.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+++|+|+.|.+ +. . +++.+.+++.+.... ..+|++..| .+||+++++++ +. ++++|+ +|+|++
T Consensus 34 ~~~~~i~l~~~~~-~~---~-~~~~~~~al~~~~~~-~~~Y~~~~g-~~lr~~ia~~~-~~-----~~~~i~--~t~G~~ 98 (371)
T PRK05166 34 GVPRIAKLGSNEN-PL---G-PSPAVRRAFADIAEL-LRLYPDPQG-RALREAIAART-GV-----PADRII--LGNGSE 98 (371)
T ss_pred CCcceEEcCCCCC-CC---C-CCHHHHHHHHHHHHH-hhcCCCCcH-HHHHHHHHHHh-Cc-----CHHHEE--EcCCHH
Confidence 3468999999985 11 2 333444444443323 556999888 49999999997 33 267888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +.+++.+||+|+++.|+|+.+...++..|++++.+++ .+++++|++++++.+. ++++++++++||||
T Consensus 99 ~~l~~~--~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP 171 (371)
T PRK05166 99 DLIAVI--CRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV--TPDLGFDLDALCAAVA---RAPRMLMFSNPSNP 171 (371)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec--CCCCCCCHHHHHHhhh---cCCCEEEEeCCCCC
Confidence 999888 6666889999999999999999999999999999987 3357899999999887 56788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|++.|++ ++++|+||+|.++.+++. ..+.+....+..+++|+++||||.||++|+|+||++ ++
T Consensus 172 tG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i--~~ 246 (371)
T PRK05166 172 VGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD--YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGL--VS 246 (371)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC--cccHHHHHhhcCCCEEEEeechHhhhcchhheeeee--cC
Confidence 9999999999999999875 889999999999986431 112222233334689999999999999999999985 33
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+... ..+++.++|.++..++.+. .++++.++.++++++.+.+.|++.+ +.+ .+
T Consensus 247 ~~~----l~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~-~p 308 (371)
T PRK05166 247 DPE----LVGLLDRVRT--PFNVNGAAQAAALAALDDE-------EHLAKGVALALAERERLKKELAEMG----YRI-AP 308 (371)
T ss_pred CHH----HHHHHHHhcc--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCc----Cee-CC
Confidence 677 7777766442 3568889998888888754 4567777889999999999999886 333 35
Q ss_pred CcceeEecCC--CHH-HHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL--TPY-QVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 368 ~~g~~~~~~~--~~~-~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
.+|+|+|+.+ +.+ +.+.++ ++||.+.|+. ||+++. .++.+++.++|++++
T Consensus 309 ~~g~fl~~~~~~~~~~l~~~l~-~~gi~v~p~~~~~~~~~iRi~~~~--~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 309 SRANFLFFDARRPASAVAEALL-RQGVIVKPWKQPGFETFIRVSIGS--PEENDHFVAALDKVL 369 (371)
T ss_pred CcCCEEEEeCCCCHHHHHHHHH-HCCeEEecCCCCCCCCeEEEEcCC--HHHHHHHHHHHHHHh
Confidence 6678999976 333 445554 5799999872 999964 556677777777654
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=316.52 Aligned_cols=316 Identities=13% Similarity=0.120 Sum_probs=246.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
++.++|+.|++ ..++++.+++++...+.. ...|++.. .++||++|++++ +. ++++|+ +|+|++++
T Consensus 43 ~~~i~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~Y~~~~-~~~Lr~aia~~~-~v-----~~e~I~--it~Gs~~a 107 (370)
T PRK09105 43 EGAVFLNANEC----PLGPSPAARDAAARSAAL--SGRYDLEL-EDDLRTLFAAQE-GL-----PADHVM--AYAGSSEP 107 (370)
T ss_pred CCcEEecCCCC----CCCCCHHHHHHHHHHHHH--hcCCCCch-HHHHHHHHHHHh-Cc-----ChhhEE--EcCChHHH
Confidence 67899999984 224444454544444322 23487754 899999999987 33 277998 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +..++++||+|++++|+|+.|...++..|++++.+++ .+++.+|++++++. . +++++++++|||||||
T Consensus 108 i~~~--~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~-~---~~~~~v~l~nP~NPTG 179 (370)
T PRK09105 108 LNYA--VLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPL--RADGAHDVKAMLAA-D---PNAGLIYICNPNNPTG 179 (370)
T ss_pred HHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecC--CCCCCCCHHHHHhc-C---CCCCEEEEeCCCCCCC
Confidence 9998 6777889999999999999999999999999999988 33578999999876 3 4578999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.++++++++.++ +++++|+||+|.+|... ++...+.+..+++++++||||.||++|+|+||+++ ++
T Consensus 180 ~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~------~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~---~~ 249 (370)
T PRK09105 180 TVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA------PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAA---RP 249 (370)
T ss_pred cCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC------cchHHHHhhCCCEEEEecccHhhcCCccceeeeec---CH
Confidence 9999999999998754 58999999999877532 12233334567899999999999999999999974 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+. ....++.+.|.++..+|.+. +++++.+++++++++.+.+.|++++ +.+.++++
T Consensus 250 ~----~i~~l~~~---~~~~~~~~~~~aa~~~L~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~~ 311 (370)
T PRK09105 250 D----LLAKLARF---GHNPLPVPAAAAGLASLRDP-------KLVPQRRAENAAVREDTIAWLKKKG----YKCTPSQA 311 (370)
T ss_pred H----HHHHHHhc---CCCCcCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CCcCCCCC
Confidence 8 77777765 23458888888888888764 5677888899999999999999876 45667888
Q ss_pred ceeEecCC--CHH-HHHHHhhhccEEEeCC-----C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 370 GMFCFSGL--TPY-QVDRLAKEFHIYMTQD-----G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 370 g~~~~~~~--~~~-~~~~ll~~~gI~i~pg-----g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+||. +.+ +.+ +.+.++ ++||.+..+ + ||+++ +++++++++++|++++
T Consensus 312 ~f~~-~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 312 NCFM-VDVKRPAKAVADAMA-KQGVFIGRSWPIWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred cEEE-EeCCCCHHHHHHHHH-HCCcEEecCCCCCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 8765 544 444 446665 569998421 2 99985 4677888888888765
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=339.59 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=255.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcccc-CCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVK-EGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~v~~~~t~gg 126 (435)
+++++|+|+.|++ +. ++|+.+.+.+...+... . + ..|.+++++++++++....+.+.+ +++|+ +++|+
T Consensus 695 ~g~~vI~LsinE~-d~---ppPp~V~eAi~eal~~~-~--~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~II--vt~Gs 763 (1082)
T PLN02672 695 QESSLIHMDVDES-FL---PVPSAVKASIFESFVRQ-N--I--SESETDPRPSILQFIKSNYGFPTDSCTEFV--YGDTS 763 (1082)
T ss_pred CCCCEEEEeCCCC-CC---CCCHHHHHHHHHHHhhc-C--C--CCCChHHHHHHHHHHHHHhCcCCCCCCEEE--EeCCH
Confidence 4578999999995 33 44444444433333322 1 2 345678899999988444333332 35787 88888
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC-
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH- 205 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~- 205 (435)
++++.++ +.++++|||+|+++.|+|+.|...++..|++++.+|+.+++++.+|++.+++++.+ .+++++++++||
T Consensus 764 ~elL~ll--l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~--~~~~~I~L~nPnh 839 (1082)
T PLN02672 764 LALFNKL--VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET--VKKPWVYISGPTI 839 (1082)
T ss_pred HHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc--CCCCEEEEECcCC
Confidence 8888777 77788999999999999999999999999999999985445789999999999862 134578888997
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc---HHHHH-Hhhhc--CCeEEEEecccccccccCCcc
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD---AQAIR-IFLED--EHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~---~~~~~-~~~~~--~~~~i~~~s~SK~~g~~G~Rv 279 (435)
||||.+++.+++++|+++|++|+++||+||+|.++.|++.... ..+.. .+... ..++++++||||.++++|+|+
T Consensus 840 NPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRI 919 (1082)
T PLN02672 840 NPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEF 919 (1082)
T ss_pred CCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHh
Confidence 9999999999999999999999999999999998888642110 11111 11111 247999999999999999999
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHh---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL---SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l---~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
||++ +++++ +++.+.+.... ..+....|.++..++ .+. ...|.+++++.++.++++++.+.+.|+++
T Consensus 920 GylI--ap~~e----Li~~l~~~~~~--s~~~~~~q~Aaaaalall~~~--~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~ 989 (1082)
T PLN02672 920 GFLA--LNDSV----LIDAFHSAPGL--SRPHSTLKYTIKKLLGLKNQK--SSDLLDGVAEQKKILKSRAERLKETLEAC 989 (1082)
T ss_pred eeEE--eCCHH----HHHHHHHhhhh--cCCCcHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9996 44566 77777664322 223334455544443 210 01255778899999999999999999988
Q ss_pred CCCCCccccccCcceeEecCC---------------------CH-HHHHHHhhhccEEEeCC---C-----cEEeccCCC
Q 013839 357 GSSLNWEHITNQLGMFCFSGL---------------------TP-YQVDRLAKEFHIYMTQD---G-----RISMAGVTT 406 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~---------------------~~-~~~~~ll~~~gI~i~pg---g-----Ris~~~~~~ 406 (435)
+ +.+.+++||||+|+.+ +. ++.+.++++.||.+.|| | ||+++. ++
T Consensus 990 G----i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~-~~ 1064 (1082)
T PLN02672 990 G----WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFAL-ED 1064 (1082)
T ss_pred C----CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecC-CH
Confidence 6 5688899999999842 22 35577877789999997 2 999986 88
Q ss_pred CcHHHHHHHHHHHHH
Q 013839 407 GNVNYLANAIHEVTR 421 (435)
Q Consensus 407 e~i~~~~~~l~~~l~ 421 (435)
+++++++++|+++.+
T Consensus 1065 e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1065 SEFDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998654
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=315.34 Aligned_cols=317 Identities=15% Similarity=0.145 Sum_probs=245.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|++ +. ++++. +.+++.... ....|++ .+.++||+++++++ +. .+++|+ +++|++
T Consensus 50 ~~~~~i~l~~n~~-p~---~~~~~-v~~a~~~~~--~~~~Yp~-~~~~~lr~~ia~~~-~~-----~~~~I~--~t~Ga~ 113 (380)
T PLN03026 50 KPEDIVKLDANEN-PY---GPPPE-VLEALGNMK--FPYVYPD-PESRRLRAALAEDS-GL-----ESENIL--VGCGAD 113 (380)
T ss_pred CccceEEccCCCC-CC---CCCHH-HHHHHHhhH--hhccCCC-CCHHHHHHHHHHHh-Cc-----ChhhEE--EcCCHH
Confidence 3568999999984 11 23333 444443321 1244765 46899999999998 32 267888 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..++.+||+|++++|+|+.|...++..|++++.++. .+++++|+++|++.+.. ++++++++++||||
T Consensus 114 ~~i~~~--~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~~--~~~~~v~l~~P~NP 187 (380)
T PLN03026 114 ELIDLL--MRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPR--TPDFSLDVPRIVEAVET--HKPKLLFLTSPNNP 187 (380)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHHhc--cCCcEEEEeCCCCC
Confidence 999888 6667889999999999999999999999999999987 34578999999998832 56899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|++.+ +++|+||+|.+|.+.+ .. .. ..+..+++++++||||.||++|+|+||+++
T Consensus 188 TG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~---~~--~~-~~~~~~~viv~~SfSK~~glaGlRiGy~~~--- 254 (380)
T PLN03026 188 DGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE---SR--MK-WVKKYDNLIVLRTFSKRAGLAGLRVGYGAF--- 254 (380)
T ss_pred CCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc---ch--HH-HHHhCCCEEEEecchHhhcCccccceeeec---
Confidence 99999999888888753 8999999999987642 11 11 223457899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+... ..+.+.++|.++.++|.+. +++++.++.++++++.+.+.|+.++. +. ..+
T Consensus 255 ~~~----~i~~l~~~~~--~~~~~~~~q~aa~~aL~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~~---~~-~~p 317 (380)
T PLN03026 255 PLS----IIEYLWRAKQ--PYNVSVAAEVAACAALSNP-------KYLEDVKNALVEERERLFGLLKEVPF---LE-PYP 317 (380)
T ss_pred CHH----HHHHHHHhcC--CCCCCHHHHHHHHHHhhCH-------HHHHHHHHHHHHHHHHHHHHHHHCCC---Ce-ECC
Confidence 888 8888877654 2567889999999999764 56778888999999999999998863 22 356
Q ss_pred CcceeEecCC----CHHHH-HHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL----TPYQV-DRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 368 ~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
.+++|+|+.+ +.+.+ +.+ .++||.++++ + |||++ +.+++++++++|+++
T Consensus 318 ~~~~f~~~~~~~~~~~~~~~~~l-~~~gI~v~~~~~~~~~~~lRis~~--~~~~~~~l~~al~~~ 379 (380)
T PLN03026 318 SDANFILCRVTSGRDAKKLKEDL-AKMGVMVRHYNSKELKGYIRVSVG--KPEHTDALMEALKQL 379 (380)
T ss_pred CCCeEEEEECCCCCCHHHHHHHH-HHCCeEEEECCCCCCCCEEEEecC--CHHHHHHHHHHHHHh
Confidence 7788998865 33444 555 4789999876 1 99985 456778888887653
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=316.86 Aligned_cols=319 Identities=14% Similarity=0.119 Sum_probs=248.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.+.|+|+.|++ .. .+++ .+.+++..... ...|.|..|.+++|+++++++ +. ++++|+ +|+|++++
T Consensus 29 ~~~i~l~~n~~-~~---~~~~-~v~~a~~~~~~--~~~~~p~~g~~~lr~~ia~~~-~~-----~~~~i~--~t~G~~~~ 93 (359)
T PRK03158 29 EKIVKLASNEN-PY---GPSP-KVKEAIAAHLD--ELALYPDGYAPELRTKVAKHL-GV-----DEEQLL--FGAGLDEV 93 (359)
T ss_pred CceEEecCCCC-CC---CCCH-HHHHHHHHHHH--HhhcCCCCcHHHHHHHHHHHh-CC-----CHHHEE--ECCCHHHH
Confidence 47899999985 22 2233 34444433322 234666789999999999998 32 267888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +.+++++||+|++++|+|+.+...+...|++++.+++. ++++|++.+++.+. ++++++++++||||||
T Consensus 94 l~~~--~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~---~~~~~v~i~~p~NPtG 165 (359)
T PRK03158 94 IQMI--SRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAID---EQTKIVWICNPNNPTG 165 (359)
T ss_pred HHHH--HHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcC---CCCCEEEEeCCCCCCC
Confidence 9887 66678899999999999999999999999999999983 46899999998886 5778999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++.++++.|+ +++++|+||+|.++.+++.. ...+.. .+..+++++++||||.+|++|+|+||+++ ++
T Consensus 166 ~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~--~~~~~~-~~~~~~vi~~~S~SK~~g~~GlRiG~~v~---~~ 238 (359)
T PRK03158 166 TYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDY--PDTLPL-LEKYENLIVLRTFSKAYGLAALRVGYGIA---SE 238 (359)
T ss_pred CCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccc--ccHHHH-HHhcCCEEEEEechHhhcCcchhhehhcC---CH
Confidence 9999999999888774 69999999999998875321 112222 23456899999999999999999999974 78
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+... ..+.+.++|.++..+|.+. ++.++.++.++++++.+.+.|++.+ +.+. +.+
T Consensus 239 ~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~-~~~ 300 (359)
T PRK03158 239 E----LIEKLNIARP--PFNTTRIAQYAAIAALEDQ-------AFLKECVEKNAEGLEQYYAFCKEYG----LFYY-PSQ 300 (359)
T ss_pred H----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CeeC-CCc
Confidence 8 7887877543 3568999999999999764 4566677778888888889988875 3444 445
Q ss_pred ceeEecCC--CHH-HHHHHhhhccEEEeCC---C-----cEEeccCCCCcHHHHHHHHHHH
Q 013839 370 GMFCFSGL--TPY-QVDRLAKEFHIYMTQD---G-----RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 370 g~~~~~~~--~~~-~~~~ll~~~gI~i~pg---g-----Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
|+|+|+.+ +.+ +.+.+ .++||.+.|| | ||+++ +.+++++++++|+++
T Consensus 301 g~~i~~~~~~~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 301 TNFIFVDTGRDANELFEAL-LKKGYIVRSGAALGFPTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred CcEEEEECCCCHHHHHHHH-HHCCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHh
Confidence 78999966 334 44555 4689999997 2 99985 578889999998875
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=314.34 Aligned_cols=320 Identities=14% Similarity=0.093 Sum_probs=249.4
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+.++|+|+.|++ .+++++..++.+...+.......|++ .|.++||+++++++. ... +++|+ +++|+++
T Consensus 25 ~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~-~~~----~~~I~--~t~G~~~ 92 (356)
T PRK04870 25 ATGMVKLDAMEN----PYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG-VPA----GADVL--LGNGSDE 92 (356)
T ss_pred CCCceeCcCCCC----CCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC-cCC----CCcEE--EcCCHHH
Confidence 458999999984 23455555555555554433566887 688999999999983 221 24777 8999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +..++.+||+|++++|+|..+...++..|++++.+++ ++++++|++.+++.+.+ .+++++++++|||||
T Consensus 93 ~i~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~--~~~~~~d~~~l~~~~~~--~~~~~v~l~~p~NPt 166 (356)
T PRK04870 93 LIQLL--ALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPL--TADFTLDLPAMLAAIAE--HRPALVFLAYPNNPT 166 (356)
T ss_pred HHHHH--HHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHHHhhc--CCCCEEEEcCCCCCC
Confidence 98888 6666789999999999999999999999999999998 34589999999999863 367899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++| +.++|+||+|.+|.+.. ..+. . ...+++++++|||| ++++|+|+||+++ +
T Consensus 167 G~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~---~~~~---~-~~~~~vi~~~S~SK-~~~~GlRiG~~i~---~ 232 (356)
T PRK04870 167 GNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS---WLPR---L-ARFPNLLVMRTVSK-LGLAGLRLGYLAG---H 232 (356)
T ss_pred CCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc---hHHH---H-hhCCCEEEEecchh-hhhHHHhhhhhhC---C
Confidence 9999999999999998 67899999999886532 1111 1 33468999999999 8999999999974 7
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+... ..+.+.++|.++..++.+. +.+++.+++++++++.+.+.|++++. +.+. +.
T Consensus 233 ~~----~i~~~~~~~~--~~~~~~~~q~~a~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~-~~ 295 (356)
T PRK04870 233 PA----WIAELDKVRP--PYNVNVLTQATALFALEHV-------DVLDAQAAQLRAERTRLAAALAALPG---VTVF-PS 295 (356)
T ss_pred HH----HHHHHHHccC--CCcCCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---cEEC-CC
Confidence 87 8887777542 3467888998888888753 34667778889999999999988732 4443 55
Q ss_pred cceeEecCC-CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHH
Q 013839 369 LGMFCFSGL-TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 369 ~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+|+|+|+.+ +.+.+...++++||.+.++. ||+++ +.+++++++++|+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~ 355 (356)
T PRK04870 296 AANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAA 355 (356)
T ss_pred CCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHh
Confidence 677999987 34555556678999998761 99985 467788999988765
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=313.39 Aligned_cols=336 Identities=14% Similarity=0.158 Sum_probs=257.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
...+.|+|+.|.+ ..++++...+.+...+..+....|++..|.+++|+++++++ +.. +++++ +++|++
T Consensus 26 ~~~~~i~l~~~~~----~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l-~~~-----~~~v~--~~~g~t 93 (380)
T PRK06225 26 KDKEMIWMGQNTN----HLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL-GLD-----DDEAL--ITAGAT 93 (380)
T ss_pred hcCCeEEccCCCC----CCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc-CCC-----CCcEE--EeCCHH
Confidence 3468999999873 22334344443333433333456999999999999999997 332 56888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC-CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD-PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++.+ ++++.+|++.+++.+. ++++++++++|+|
T Consensus 94 ~al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~N 168 (380)
T PRK06225 94 ESLYLV--MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD---ENTRLIYLIDPLN 168 (380)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC---CCceEEEEeCCCC
Confidence 999988 666788999999999999999888899999999998732 3357899999999887 5688999899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++||+++|+||+|.+|..+. ...... ..++++++.||||.+|++|+|+||+++
T Consensus 169 ptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-----~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~-- 239 (380)
T PRK06225 169 PLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH-----TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVA-- 239 (380)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC-----Cchhhc--CCCCEEEEeechhhcCCccceeEEEec--
Confidence 99999999999999999999999999999998776432 111111 236799999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+..... ...+.+.++|.++...+.... ++.++.++.++++++.+.+.|+++... .+.. .
T Consensus 240 -~~~----l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~-~ 305 (380)
T PRK06225 240 -TPD----LIEVVKSIVI-NDLGTNVIAQEAAIAGLKVKD------EWIDRIRRTTFKNQKLIKEAVDEIEGV-FLPV-Y 305 (380)
T ss_pred -CHH----HHHHHHHHHh-cccCCCHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHHhCcCC-cccc-C
Confidence 788 7777776543 345678889988888886532 556667777888888888999875310 1222 3
Q ss_pred cCcceeEecCC-----CHHHHHHHhhhccEEEeCC-------C----cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 367 NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD-------G----RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 367 ~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg-------g----Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+|+|+|+.+ +.+.+...+.++||.+.|| | |++++. +++++++++++|++++++.+
T Consensus 306 ~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 306 PSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred CCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHHHHhh
Confidence 45566778754 4444443345789999886 2 999976 78999999999999998665
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=314.83 Aligned_cols=317 Identities=18% Similarity=0.182 Sum_probs=243.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|++ +. ++ ++.+.+++.+........|++. |.++||+++++++ +. ++++|. +|+|++++
T Consensus 24 ~~~i~l~~~~~-~~---~~-~~~~~~a~~~~~~~~~~~y~~~-~~~~lr~aia~~~-~~-----~~~~I~--it~G~~~a 89 (353)
T PRK05387 24 AKLIKLNTNEN-PY---PP-SPKVLEAIRAALGDDLRLYPDP-NADALRQAIAAYY-GL-----DPEQVF--VGNGSDEV 89 (353)
T ss_pred cceeeccCCCC-CC---CC-CHHHHHHHHHHhhhhhhcCCCC-cHHHHHHHHHHHh-CC-----CHHHEE--EcCCHHHH
Confidence 57899999995 21 22 3344444444332224568665 6699999999998 32 367888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +.+++.+||+|++++|+|+.|...++..|++++.+++ .+++++|++.+++ .++++++++||||||
T Consensus 90 l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~-------~~~~v~~~~P~NPtG 158 (353)
T PRK05387 90 LAHA--FLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPL--DDDFSIDVEDYLR-------PNGGIIFPNPNAPTG 158 (353)
T ss_pred HHHH--HHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeec--CCCCCCCHHHHHh-------cCCEEEEeCCCCCCC
Confidence 9998 6777899999999999999999999999999999988 3457899998863 236788999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++|++.++ ++++|+||+|.+|... ...+. .+..+++++++||||.+|++|+|+||+++ ++
T Consensus 159 ~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~----~~~~~---~~~~~~~i~~~S~SK~~~~~GlR~G~~~~---~~ 226 (353)
T PRK05387 159 IALPLAEIERILAANP--DSVVVIDEAYVDFGGE----SAIPL---IDRYPNLLVVQTFSKSRSLAGLRVGFAIG---HP 226 (353)
T ss_pred CCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc----chHHH---HhhCCCEEEEEehhHhhcchhhhceeeec---CH
Confidence 9999999999988654 8999999999876421 11222 23346799999999999999999999964 88
Q ss_pred hHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 290 KQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
+ +++.+++..... ..+++.++|.++..++.+. ++.++.+++++++++.+.+.|+++| +.+. +.
T Consensus 227 ~----~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~-~~ 290 (353)
T PRK05387 227 E----LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDE-------AYFEETRAKVIATRERLVEELEALG----FEVL-PS 290 (353)
T ss_pred H----HHHHHHHhhccCCCCCcCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CeEC-CC
Confidence 8 878777765432 3467889999998888764 4556778889999999999999886 3443 45
Q ss_pred cceeEecCC---CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 369 LGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 369 ~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+++|+|+.+ +.+.+.+.+.++||.+.+.+ |++++ +.+++++++++|++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 291 KANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG--TDEEMEALVDALKEILA 352 (353)
T ss_pred cCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence 677888865 44444334467899996542 99985 56889999999988764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=313.73 Aligned_cols=322 Identities=15% Similarity=0.127 Sum_probs=250.8
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
....++|+.|++ +.++++.+++.+.+.+. . ...|+++ +.++||++|++++ +. ++++|+ +++|+++
T Consensus 31 ~~~~~~l~~~~~----~~~~~~~~~~a~~~~~~-~-~~~Y~~~-~~~~Lr~~ia~~~-~~-----~~~~I~--it~G~~~ 95 (369)
T PRK08153 31 RPFRARIGANES----GFGPSPSVIAAMREAAA-E-IWKYGDP-ENHDLRHALAAHH-GV-----APENIM--VGEGIDG 95 (369)
T ss_pred CcceeEecCCCC----CCCCCHHHHHHHHHHHH-H-hhcCCCC-ccHHHHHHHHHHh-CC-----CHHHEE--EcCCHHH
Confidence 345679999994 23445555444444432 2 3458876 5799999999998 32 267888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +..++.+||.|++++|+|+.+...+...|++++.+|. +++ ++|++++++.+.. .+++++++++|||||
T Consensus 96 ~l~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~-~~~--~~~~~~l~~~~~~--~~~~~i~l~~P~NPt 168 (369)
T PRK08153 96 LLGLI--VRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPY-RDD--REDLDALLDAARR--ENAPLVYLANPDNPM 168 (369)
T ss_pred HHHHH--HHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeC-CCC--CCCHHHHHHHhcc--cCCcEEEEeCCCCCC
Confidence 99888 6666889999999999999999888899999999987 232 6889988877642 467899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|++.|++ +++||+||+|.++.+++ ...++ ....+++++++||||.+|++|+|+||+++ +
T Consensus 169 G~~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~---~~~~~---~~~~~~~i~~~SfSK~~g~~GlRiG~~v~---~ 238 (369)
T PRK08153 169 GSWHPAADIVAFIEALPE-TTLLVLDEAYCETAPAG---AAPPI---DTDDPNVIRMRTFSKAYGLAGARVGYAIG---A 238 (369)
T ss_pred CCCCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCcc---cchhh---hhcCCCEEEEecchHhccCcchheeeeec---C
Confidence 999999999999998874 89999999999988653 12222 22346899999999999999999999974 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+... ..+.+.++|.++..+|.+. +++++.++.++++++.+.+.|+..|. ... +.
T Consensus 239 ~~----~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~~~~~L~~~g~----~~~-p~ 300 (369)
T PRK08153 239 PG----TIKAFDKVRN--HFGMNRIAQAAALAALKDQ-------AYLAEVVGKIAAARDRIAAIARANGL----TPL-PS 300 (369)
T ss_pred HH----HHHHHHHhhc--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCCC----ccC-CC
Confidence 88 8887877554 3568899999999999754 55677888899999999999988763 333 57
Q ss_pred cceeEecCCC-----HHHH-HHHhhhccEEEe-CC-----C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 369 LGMFCFSGLT-----PYQV-DRLAKEFHIYMT-QD-----G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 ~g~~~~~~~~-----~~~~-~~ll~~~gI~i~-pg-----g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+++|+|+.+. .+.+ +.+ .++||.++ |+ + ||+++ +++++++++++|++++...
T Consensus 301 ~~~f~~~~~~~~~~~a~~l~~~l-~~~Gi~v~~p~~~~~~~~iRis~~--~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 301 ATNFVAIDCGRDGAFARAVLDGL-IARDIFVRMPGVAPLDRCIRVSCG--PDEELDLFAEALPEALEAA 366 (369)
T ss_pred cCcEEEEECCCCcccHHHHHHHH-HHCCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 7889998652 2333 444 46899995 53 1 99985 5789999999999988644
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=309.65 Aligned_cols=336 Identities=14% Similarity=0.114 Sum_probs=249.1
Q ss_pred CchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcccc
Q 013839 35 DPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVK 114 (435)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 114 (435)
..+.....++.. +..++++|+.|++ + .++|+.+++++...+. . ...|++ .+.+++|+++++++ +. +
T Consensus 6 ~~~~~~~~~~~~-~~~~~i~l~~~~~-~---~~~p~~~~~a~~~~~~-~-~~~y~~-~~~~~lr~~ia~~~-~~-----~ 71 (356)
T PRK08056 6 GNIREAATVLGI-SPDQLLDFSANIN-P---LGMPVSLKRAIIDNLD-C-AERYPD-VEYRHLHQALARHH-QV-----P 71 (356)
T ss_pred ccHHHHHHHhCC-ChhhEEEeccccC-C---CCCCHHHHHHHHHHHH-h-cccCcC-ccHHHHHHHHHHHh-Cc-----C
Confidence 334455555532 4568999999984 2 2444444444433332 2 235866 46899999999997 32 2
Q ss_pred CCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 115 EGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 115 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
+++|+ +++|+++++.++ +.. +.+|+ +++++|+|..|...++..|++++.+|+.+++++.+| +++++.+. +
T Consensus 72 ~~~i~--it~Ga~~~l~~~--~~~-l~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~---~ 141 (356)
T PRK08056 72 ASWIL--AGNGETESIFAV--VSG-LKPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT---P 141 (356)
T ss_pred hhhEE--ECCCHHHHHHHH--HHH-hCCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc---C
Confidence 67888 999999998887 443 36776 777899999999999999999999998434456666 45556565 5
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~ 274 (435)
+++++++++||||||.+++.+++++|+++|++|+++||+||+|.+|.+++ ... +..+ ...+++++++||||.||+
T Consensus 142 ~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~--~~~~-~~~~~~i~~~S~SK~~~~ 216 (356)
T PRK08056 142 DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE--TGF--IPQL-ADNPHLWVLRSLTKFYAI 216 (356)
T ss_pred CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc--hHH--HHHh-ccCCCEEEEEechhhccC
Confidence 78899999999999999999999999999999999999999999988643 111 1122 234689999999999999
Q ss_pred cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 275 YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 275 ~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
+|+|+||++ +++++ +++.+++.. ...+++.++|.++..++.+. .+.++.+++++++++.+.+.|+
T Consensus 217 ~G~RiG~~v--~~~~~----~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~ 281 (356)
T PRK08056 217 PGLRLGYLV--NSDDA----AVARMRRQQ--MPWSINAFAALAGEVILQDR-------AYQQATWQWLAEEGARFYQALC 281 (356)
T ss_pred cchhheeee--cCCHH----HHHHHHHhC--CCCchhHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999996 33556 666676543 33567778898888888654 4567788899999999999998
Q ss_pred hhCCCCCccccccCcceeEecCC--C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 355 KLGSSLNWEHITNQLGMFCFSGL--T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~~--~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.++. +.+.++ +|+|+|+.+ + .++...+ .++||.+.+|. ||+++ +.++.+.++++|+++++
T Consensus 282 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 282 ALPL---LTVWPG-RANYLFLRCERPDIDLQRAL-LTQRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVLT 354 (356)
T ss_pred cCCC---cEEcCC-CCcEEEEEcCCChHHHHHHH-HHCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHHc
Confidence 7742 444444 678899976 3 3344555 46899998761 99985 46778889999887653
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=305.01 Aligned_cols=321 Identities=18% Similarity=0.211 Sum_probs=258.1
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++++|+.++ ++ .+++ +.+.+++..... ..+.|+++ ...++++++++++.... +++|. +.+|+++.
T Consensus 22 ~~~i~LssNe--nP--~gp~-~~~~~~~~~~~~-~~~rYPd~-~~~~l~~a~a~~~~~~~-----~~~V~--~gnGsde~ 87 (356)
T COG0079 22 PGIIKLSSNE--NP--YGPP-PKVIEAIRAALD-KLNRYPDP-DYRELRAALAEYYGVVD-----PENVL--VGNGSDEL 87 (356)
T ss_pred ccceeecCCC--CC--CCCC-HHHHHHHHHHHH-hhccCCCC-cHHHHHHHHHHHhCCCC-----cceEE--EcCChHHH
Confidence 3799999998 32 2333 333333333332 25668876 68899999999984322 57888 89999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +.+++.+||+|+++.|+|..|...++..|++++.++.. + |.+|++.+.+.+. ++++++++||||||||
T Consensus 88 i~~l--~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~--~-~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG 159 (356)
T COG0079 88 IELL--VRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK--E-FRLDLDAILAAIR---DKTKLVFLCNPNNPTG 159 (356)
T ss_pred HHHH--HHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEeccc--c-cccCHHHHHHhhh---cCCCEEEEeCCCCCCC
Confidence 9999 77788999999999999999999999999999999983 3 8899999999998 5789999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
..++.++++++.+.+.+ +.+||+||+|.+|... ..+... ...+++++++||||.||++|+|+||+++ ++
T Consensus 160 ~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~------~~~~l~-~~~~nlivlRTfSKa~gLAGlRlGy~ia---~~ 228 (356)
T COG0079 160 TLLPREELRALLEALPE-GGLVVIDEAYIEFSPE------SSLELL-KYPPNLIVLRTFSKAFGLAGLRVGYAIA---NP 228 (356)
T ss_pred CCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc------hhhhhc-cCCCCEEEEEecHHhhhcchhceeeccC---CH
Confidence 99999999999999999 9999999999999852 122222 2567899999999999999999999864 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+++... .++.+.+++.++.++|.+. +++++.+++..+.++.+.+.|+.+|. ..+.+.+
T Consensus 229 ~----~i~~l~~vr~--p~~v~~~a~~aa~aal~~~-------~~~~~~~~~~~~~r~rl~~~l~~~~~---~~v~pS~- 291 (356)
T COG0079 229 E----LIAALNKVRP--PFNVSSPALAAAIAALRDA-------DYLEESVERIREERERLYAALKALGL---FGVFPSQ- 291 (356)
T ss_pred H----HHHHHHHhcC--CCCCCHHHHHHHHHHcccH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---CeecCCC-
Confidence 8 9999998643 3578899999999999875 78889999999999999999999873 2244444
Q ss_pred ceeEecCCC---HHHHHHHhhhccEEEeCC---C------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 370 GMFCFSGLT---PYQVDRLAKEFHIYMTQD---G------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 370 g~~~~~~~~---~~~~~~ll~~~gI~i~pg---g------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.|+++.+. ...+.+.|.++||.++.. + ||+++. +++.++++++|+++++.
T Consensus 292 aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt--~een~~ll~AL~~~~~~ 354 (356)
T COG0079 292 ANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGT--PEENDRLLAALREVLKG 354 (356)
T ss_pred CcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCC--HHHHHHHHHHHHHHHhc
Confidence 568888763 234544455689999865 1 999954 56669999999988764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=309.99 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=235.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
...++|+|+.|+. ..++++.+++++...+. . ...|++.. .++||++|++++ + +++++|+ +|+|++
T Consensus 20 ~~~~~i~l~~~~n----~~~~~~~~~~a~~~~~~-~-~~~Y~~~~-~~~Lr~aia~~~-~-----v~~~~I~--it~G~~ 84 (360)
T PRK07392 20 PPDAILDFSASIN----PLGPPESVIAAIQSALS-A-LRHYPDPD-YRELRLALAQHH-Q-----LPPEWIL--PGNGAA 84 (360)
T ss_pred CcccEEEeCCcCC----CCCCCHHHHHHHHHHHH-H-hhcCCCcC-HHHHHHHHHHHh-C-----cChhhEE--ECCCHH
Confidence 3457899999973 22444444444433332 2 45688754 689999999998 3 2377998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC---CcChHhHHHHhhcCCCCcEEEEeCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK---SLDFAALMDDIKNAPDSSFFLLHPSA 204 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~e~l~~~i~~~~~~~~~v~~~~p 204 (435)
+++.++ +.. +.+||+|++++|+|..|...++..|++++.+++.++.++ ..+++++++.. +++++++++||
T Consensus 85 ~~i~~~--~~~-l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP 157 (360)
T PRK07392 85 ELLTWA--GRE-LAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL----TPNDGLLLNNP 157 (360)
T ss_pred HHHHHH--HHH-hCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc----cCCCEEEEeCC
Confidence 999887 444 457899999999999999999999999999998433322 23555554432 35789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
|||||.++++++ |.++++++++ +|+||+|.+|.+++. ..+.....+..+++++++||||.||++|+|+||+++
T Consensus 158 ~NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~---~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~ 230 (360)
T PRK07392 158 HNPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDA---EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIA 230 (360)
T ss_pred CCCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCcc---ccchHHHhhcCCCEEEEEechhhhcCCchheeeeeC
Confidence 999999999775 5555667785 666999999987531 122222234457899999999999999999999974
Q ss_pred EecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
+++ +++.+.+.. ...+++.++|.++..+|.+. .+.+..++.++++++.+.+.|+.++. +.+
T Consensus 231 ---~~~----~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~ 291 (360)
T PRK07392 231 ---HPD----RLQRWQQWR--DPWPVNGLAAAAAIAALADR-------DFQQQTWAWLPPAREALFQGLASLPG---LTP 291 (360)
T ss_pred ---CHH----HHHHHHhhC--CCCCCCHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---cEE
Confidence 777 777776543 23578999999999999864 34455667788889999999987632 444
Q ss_pred cccCcceeEecCC--C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 365 ITNQLGMFCFSGL--T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 365 ~~~~~g~~~~~~~--~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
. +.+++|+|+.+ + .++...+++++||.+.||. ||+++. .++.+++.++|++++.
T Consensus 292 ~-~~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 292 L-PSAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAILA 358 (360)
T ss_pred C-CCCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHhh
Confidence 4 47789999876 2 3455676777899999871 999965 3444666666665543
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=294.14 Aligned_cols=323 Identities=15% Similarity=0.130 Sum_probs=264.2
Q ss_pred CCCCCCCcccHHHHHHHHHhHc-CCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC
Q 013839 85 FLESISASVSTKMVEESVKLVY-GKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA 163 (435)
Q Consensus 85 ~~~Y~~~~g~~~lr~~ia~~l~-~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 163 (435)
..||++++|.++|+..+..+.. ..+....++-++. +|+|.+.+++.+ +..++++||.|++..++|+.....++..
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdii--it~G~t~~l~~~--l~~~~N~gd~vlie~~ty~~AL~s~~a~ 168 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDII--ITNGNTDGLFKV--LRTLINRGDHVLIEEYTYPSALQSMEAL 168 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCCCceEE--EecCCchHHHHH--HHHhhcCCCceEEecccchHHHHhcccc
Confidence 4689999999999999999653 2233333344677 899999999999 8888999999999999999999999999
Q ss_pred CCCeeeeeecCCCCCCcChHhHHHHhhcC-------CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeecc
Q 013839 164 QIPERTYHYYDPDSKSLDFAALMDDIKNA-------PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 164 g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-------~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Dea 236 (435)
|+++++|++ |+ .|+++|.|++.+.+. +....++.+++.+||||..++.+++++|.++|++|+++||+||+
T Consensus 169 gv~~ipv~m-d~--~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp 245 (472)
T KOG0634|consen 169 GVKIIPVKM-DQ--DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP 245 (472)
T ss_pred CceEEeccc-cC--CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence 999999987 34 389999999998763 12345778899999999999999999999999999999999999
Q ss_pred CCCccCCCCc------ccHHHHHHh----------hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH
Q 013839 237 YQGFASGDLD------KDAQAIRIF----------LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ 300 (435)
Q Consensus 237 y~~~~~~~~~------~~~~~~~~~----------~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~ 300 (435)
|..+.++..+ ....+...+ .+...+||...||||.++ ||+|+||+++ ++- +++++.
T Consensus 246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~---~~~----~l~ril 317 (472)
T KOG0634|consen 246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITG---NSL----FLKRIL 317 (472)
T ss_pred cceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeec---CHH----HHHHHh
Confidence 9888876311 111111111 234679999999999998 9999999975 777 777777
Q ss_pred HHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ccccccCcceeEecCCC-
Q 013839 301 QIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN-WEHITNQLGMFCFSGLT- 378 (435)
Q Consensus 301 ~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~- 378 (435)
......+.+++.++|.++.+.|+..+ .+.|.+++.+.+..|..++..+..+|.+. .|.. +.+.+|.+|+|+|+.++
T Consensus 318 ~~ae~~t~~pSg~sq~iv~a~l~~wg-qeG~~~wi~~l~~~Yt~Rrn~~l~Al~ky-lp~~~~~~~~P~aGmFiwv~i~~ 395 (472)
T KOG0634|consen 318 DLAEVATSGPSGFSQGIVYAMLKRWG-QEGFLRWIQHLRSSYTERRNALLSALDKY-LPKSVCEYHPPKAGMFIWVEIPY 395 (472)
T ss_pred hhcceeecCcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeEEecCCcceEEEEEecc
Confidence 77777888899999999999887653 45577899999999999999999999776 3344 67889999999999663
Q ss_pred ------------HHHHHHHhhhccEEEeCCC---------------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 379 ------------PYQVDRLAKEFHIYMTQDG---------------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ------------~~~~~~ll~~~gI~i~pgg---------------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+...+.++||.+.+|. |++++..+.|+++++++++..++++.-
T Consensus 396 ~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 396 INFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred cccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHh
Confidence 2345556678999999882 999988889999999999999998754
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=304.53 Aligned_cols=319 Identities=16% Similarity=0.174 Sum_probs=240.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+..++|+.|++ +. +.|+..++.+.+.+.......|++. +.+++|+++++++ +. ++++|. +|+|++++
T Consensus 22 ~~~~~l~~~~~-~~---~~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~-~~-----~~~~i~--it~G~~~~ 88 (351)
T PRK14807 22 PYKYKMDANET-PF---ELPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYC-SV-----VPTNIF--VGNGSDEI 88 (351)
T ss_pred CceeEccCCCC-CC---CCCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHh-CC-----CcccEE--EecCHHHH
Confidence 46789999995 32 4455555554444443335668764 4689999999997 32 267888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +.+++.+||+|++++|+|..+...++..|++++.+++ .+++++|++++++++.. .+++++++++||||||
T Consensus 89 l~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~~--~~~k~v~l~~p~NPtG 162 (351)
T PRK14807 89 IHLI--MLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKL--KEDYTYDVGSFIKVIEK--YQPKLVFLCNPNNPTG 162 (351)
T ss_pred HHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeec--CCCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCCC
Confidence 9888 6667889999999999999999999999999999987 34578999999999862 3678999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++++ ++++.++|+||+|.++. +. ...+. .+..+++|+++||||.+|++|+|+||+++ ++
T Consensus 163 ~~~~~~~l~~l~---~~~~~~~ivDe~y~~~~-~~---~~~~~---~~~~~~vi~~~S~SK~~~~~GlRiG~~v~---~~ 229 (351)
T PRK14807 163 SVIEREDIIKII---EKSRGIVVVDEAYFEFY-GN---TIVDV---INEFENLIVLRTLSKAFGLAGLRVGYAVA---NE 229 (351)
T ss_pred CCCCHHHHHHHH---HhCCCEEEEeCcchhhc-cc---chHHH---hhhCCCEEEEecchHhcccchhceeeeec---CH
Confidence 999988766665 45567899999998774 21 12221 23347899999999999999999999974 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+...+. ..+.+.++|.++..++.+. +.++..+.++++++.+.+.|++++. +.+. +.+
T Consensus 230 ~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~--------~~~~~~~~~~~~r~~l~~~l~~~~g---~~~~-~~~ 291 (351)
T PRK14807 230 N----ILKYLNLVKS--PYNINSLSQVIALKVLRTG--------VLKERVNYILNERERLIKELSKIPG---IKVY-PSK 291 (351)
T ss_pred H----HHHHHHHccC--CCCcCHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHhCCC---cEEC-cCC
Confidence 8 8888877543 3457889999999998742 2344555677888888888877532 4454 455
Q ss_pred ceeEecCC-CHHHHHHHhhhccEEEeCCC---------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 370 GMFCFSGL-TPYQVDRLAKEFHIYMTQDG---------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 370 g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
|+|+|+.+ +.+.+.+.+.++||.+.+++ ||+++. .++.+++++.|++++
T Consensus 292 ~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~--~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 292 TNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVSS--CEANDYLINGLKELL 350 (351)
T ss_pred ccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCC--HHHHHHHHHHHHHhh
Confidence 77899877 44555555567899997641 999954 566788888887653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=301.41 Aligned_cols=312 Identities=12% Similarity=0.134 Sum_probs=233.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+.+.|+|+.|++ + .++++..++.+.+.+..+....|++. |.++||+++++++.... +++++|+ +|+|++
T Consensus 17 ~~~~~i~l~~~~~-~---~~~p~~~~~~~~~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~~i~--it~Ga~ 86 (335)
T PRK14808 17 EKRDRTYLALNEN-P---FPFPEDLVDEVFRRLNSDTLRIYYDS-PDEELIEKILSYLDTDF---LSKNNVS--VGNGAD 86 (335)
T ss_pred CCCceeEecCCCC-C---CCCCHHHHHHHHHHhhhhhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcceEE--EcCCHH
Confidence 3468999999995 2 25555565555555543323437654 89999999999995432 3488998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..+ |.|++++|+|+.|...++..|++++.+|+. + ++.++... + ..+++++++|||||
T Consensus 87 ~~i~~~--~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~~~~----~----~~~~~i~i~nP~NP 150 (335)
T PRK14808 87 EIIYVM--MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-K-DLRIPEVN----V----GEGDVVFIPNPNNP 150 (335)
T ss_pred HHHHHH--HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCC-C-cCCCChhH----c----cCCCEEEEeCCCCC
Confidence 999888 4443 789999999999999999999999999983 3 34443221 2 24589999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+ +++++||+||+|.+|... ...+. ....+++++++||||.+|++|+|+||+++
T Consensus 151 TG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~----~~~~~---~~~~~~vi~~~S~SK~~~l~GlRvG~~v~--- 216 (335)
T PRK14808 151 TGHVFEREEIERIL----KTGAFVALDEAYYEFHGE----SYVDL---LKKYENLAVIRTFSKAFSLAAQRIGYVVS--- 216 (335)
T ss_pred CCCCcCHHHHHHHH----hcCCEEEEECchhhhcCC----chHHH---HHhCCCEEEEEechhhccCcccceEEEEe---
Confidence 99999999888876 479999999999988521 12221 22346899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+... ..+.+.++|.++..++.+. ++.++.++.+.++++.+.+.|+++| +.+.++
T Consensus 217 ~~~----~~~~l~~~~~--~~~~~~~~q~a~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~ 279 (335)
T PRK14808 217 SEK----FIDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMG----YRITDS 279 (335)
T ss_pred CHH----HHHHHHHhcC--CCCCCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEECCC
Confidence 788 8888877552 3567889999988888653 3445666777788889999998876 455666
Q ss_pred CcceeEecCC---CHHHHHHHhhhccEEEeCCC---cEEeccCCCCcHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG---RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 368 ~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg---Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
++ .|+|+.+ +.+.+...+.++||.++... ||+++. .++.++++++|+++
T Consensus 280 ~g-~f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~~~~Risi~~--~~~~~~~~~~l~~~ 334 (335)
T PRK14808 280 RG-NFVFIFMEKEEKERLLEHLRAKNIAVRSFREGVRITIGK--REENDMILKELEVF 334 (335)
T ss_pred CC-eEEEEeCCCccHHHHHHHHHHCCeEEEECCCCeEEecCC--HHHHHHHHHHHHhh
Confidence 55 4778755 34455555567999998752 999854 57788888888753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=297.31 Aligned_cols=306 Identities=12% Similarity=0.106 Sum_probs=233.1
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.++|+|+.++ ++.+++. ..... .. ...|+... .+||+++++++ +.. .+++|+ +++|++++
T Consensus 24 ~~~i~ls~Ne--np~~~~~-~~~~~---~~-----~~~Yp~~~--~~L~~~ia~~~-~~~----~~~~I~--i~~Gs~e~ 83 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPV-PPVPA---DA-----WRRLPEDD--DGLAACAARYY-GAP----DAAHVL--PVAGSQAA 83 (339)
T ss_pred hhhceeccCC--CCCCCCC-CCCCH---HH-----HHhCCCch--HHHHHHHHHHh-CCC----CcccEE--ECcCHHHH
Confidence 5689999998 3222221 11111 11 23387643 89999999998 332 146888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ ..++.+|| |++++|+|+.|...++..|++++.++.. . +. +. ...++++++|||||||
T Consensus 84 i~~l---~~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~-~-------~~----~~---~~~~~v~l~nPnNPTG 144 (339)
T PRK06959 84 IRAL---PALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEA-A-------DT----LP---AALTHLIVVNPNNPTA 144 (339)
T ss_pred HHHH---HHhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeeccc-c-------hh----cc---ccCCEEEEeCCCCCCC
Confidence 8765 33567877 8899999999999999999999988762 1 12 22 2346889999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++|++.|++++.++|+||+|.++.+. .++..+.+ .+++++++||||.||++|+|+||+++ ++
T Consensus 145 ~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~------~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~---~~ 214 (339)
T PRK06959 145 ERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA------ASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLA---AP 214 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc------ccchhccC-CCCEEEEecChhhcCCcchheEEEec---CH
Confidence 9999999999999999999999999999998643 12322322 46799999999999999999999974 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+... ..+.+.++|.++.++|.+. ++.++.+++++++++.+.+.|+++|. .+. .+
T Consensus 215 ~----li~~l~~~~~--~~~vs~~~q~a~~~~L~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g~----~~~--~~ 275 (339)
T PRK06959 215 A----LLAALRDALG--AWTVSGPARHAVRAAFADA-------AWQAAMRERLAADGARLAALLRAHGF----AVH--AT 275 (339)
T ss_pred H----HHHHHHHhcC--CCCCcHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHCCC----Ccc--Cc
Confidence 8 8888888654 3457889999999999875 45667889999999999999999873 333 35
Q ss_pred ceeEecCC-CHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 370 GMFCFSGL-TPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 370 g~~~~~~~-~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++|+|+.+ +.+.+...|.++||.++..+ ||+++. +.+++++++++|+++++.+.
T Consensus 276 ~~f~~~~~~~~~~l~~~l~~~GI~vr~~~~~~~lRisi~~-~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 276 PLFSWTDDPRAAALHAALARRGIWTRYFAPPPSVRFGLPA-DEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred ceEEEEeCCCHHHHHHHHHhCCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHHHHh
Confidence 78999987 44445444567899998753 999865 67888999999998887654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=303.43 Aligned_cols=297 Identities=14% Similarity=0.137 Sum_probs=233.7
Q ss_pred CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhC
Q 013839 85 FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDA 163 (435)
Q Consensus 85 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~ 163 (435)
...|+++. .++||+++++++ +. ++++|+ +++|+++++.++ +.+++.+| |+|++++|+|..|...++..
T Consensus 53 ~~~Y~~~~-~~~lr~~ia~~~-~~-----~~~~I~--~t~G~~~~l~~~--~~~~~~~g~~~vlv~~p~y~~~~~~~~~~ 121 (364)
T PRK04781 53 TRRYPDPQ-PPGLRSALAALY-GC-----APEQLL--IGRGSDEAIDLL--VRALCVPGRDAVLVTPPVFGMYAVCARLQ 121 (364)
T ss_pred hccCCCCC-HHHHHHHHHHHh-Cc-----ChHHEE--EeCCHHHHHHHH--HHHhcCCCCCeEEEcCCChHHHHHHHHHc
Confidence 45587764 689999999998 32 267888 999999999988 66677888 89999999999999888999
Q ss_pred CCCeeeeeecC-CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 164 QIPERTYHYYD-PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 164 g~~~~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
|++++.+|+.+ ++++.+|++++++.+.+ ++++++++++||||||.+++.++++++++.|++ +++||+||+|.+|.+
T Consensus 122 g~~~~~v~~~~~~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~-~~~iI~Deay~~f~~ 198 (364)
T PRK04781 122 NAPLVEVPLVDGADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQIERALQALQG-KALVVVDEAYGEFSD 198 (364)
T ss_pred CCEEEEEecCCCccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCC-CcEEEEeCcchhhcC
Confidence 99999999742 23467789988765532 568899999999999999999999999998864 789999999999885
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHh
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l 322 (435)
.. +.....+..+++++++||||+||++|+|+||+++ +++ +++.+.+... ..+.+.++|.++..+|
T Consensus 199 ~~------~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~---~~~----l~~~l~~~~~--~~~~~~~~~~~a~~~l 263 (364)
T PRK04781 199 VP------SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIA---NAE----LIAVLRRCQA--PYPVPTPCAALAEQAL 263 (364)
T ss_pred Cc------chHHHHhhCCCEEEEecChhhcccccceeeeeeC---CHH----HHHHHHhccC--CCCCCHHHHHHHHHHH
Confidence 32 1112224457899999999999999999999974 888 8888888654 3467888999988888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHHhhhccEEEeCCC----
Q 013839 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG---- 397 (435)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---- 397 (435)
.++. + +...+.+++++++++.+.+.|+.++. +....+.+|+|+|+.+ +.+.+.+.+.++||.++++.
T Consensus 264 ~~~~----~-~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~ 335 (364)
T PRK04781 264 SAPA----L-AVTARRVAEVRAERERLHAALAQLPG---VRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPR 335 (364)
T ss_pred hccc----H-HHHHHHHHHHHHHHHHHHHHHHhCCC---CCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCC
Confidence 7653 1 33445556788899999999988742 3333567789999987 44555555578999999861
Q ss_pred -----cEEeccCCCCcHHHHHHHHHHHH
Q 013839 398 -----RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 398 -----Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
||+++ +.++.++++++|+++.
T Consensus 336 ~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 336 LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 99985 4677788888887653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=301.18 Aligned_cols=324 Identities=14% Similarity=0.114 Sum_probs=249.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+..++++|+.|.+ +. .++ +.+.+++.+.... ...|++..+ +++|+++++++ +.. +++|+ +++|++
T Consensus 30 ~~~~~i~l~~~~~-~~---~~~-~~~~~a~~~~~~~-~~~y~~~~~-~~lr~~ia~~~-~~~-----~~~i~--~t~G~~ 94 (367)
T PRK02731 30 GIADIIKLASNEN-PL---GPS-PKAIEAIRAAADE-LHRYPDGSG-FELKAALAEKF-GVD-----PERII--LGNGSD 94 (367)
T ss_pred CCCceEEecCCCC-CC---CCC-HHHHHHHHHHHHh-hcCCCCCcH-HHHHHHHHHHh-CcC-----HHHEE--EcCCHH
Confidence 4567999999974 21 223 3333333332222 455877544 79999999998 322 56888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..++++||+|++++|+|..+...++..|++++.++. +++++|++.+++.+. ++++++++++||||
T Consensus 95 ~~l~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~---~~~~~v~l~~p~np 166 (367)
T PRK02731 95 EILELL--ARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVT---PRTRLVFIANPNNP 166 (367)
T ss_pred HHHHHH--HHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhC---CCCcEEEEeCCCCC
Confidence 998887 5666789999999999999998888899999998876 346899999999887 57789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.++++++++.|+ +++++|+||+|.++.+++. ...++. ..+..+++++++|+||.||++|+|+||+++
T Consensus 167 tG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~--~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~--- 239 (367)
T PRK02731 167 TGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD--YEDGLE-LVAKFPNVVVTRTFSKAYGLAGLRVGYGIA--- 239 (367)
T ss_pred CCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC--cccHHH-HHhhcCCEEEEeeehHhhcCcccceeeeeC---
Confidence 999999999999998875 6999999999998887532 122332 224457899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+... ..+.+.++|.++..++.+. ++.++.++.++++++.+.+.|++.|. .+. +
T Consensus 240 ~~~----~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~-~ 301 (367)
T PRK02731 240 PPE----IIDALNRVRQ--PFNVNSLALAAAVAALDDD-------AFVEKSRALNAEGMAWLTEFLAELGL----EYI-P 301 (367)
T ss_pred CHH----HHHHHHHccC--CCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCCC----ccC-C
Confidence 777 7777776543 2456789999999999763 55677888889999999999988863 344 4
Q ss_pred CcceeEecCC----CHHHHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL----TPYQVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~----~~~~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.+|+|+|+.+ +.+.+.+.|.++||.+.++ + |++++ +.+++++++++|+++++
T Consensus 302 ~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 302 SVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 4578899866 4444444445789999986 2 99985 56888999999988764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=298.10 Aligned_cols=310 Identities=17% Similarity=0.182 Sum_probs=233.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.+.|+|+.|.+ + .++++.+++.+.+.+.......|++ .|.+++|+++++++. +++++|+ +|+|++++
T Consensus 18 ~~~i~l~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Y~~-~g~~~lr~~ia~~~~------~~~~~I~--~t~G~~~~ 84 (337)
T PRK03967 18 NYRIWLDKNEN-P---FDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEFYG------LDAENIA--VGNGSDEL 84 (337)
T ss_pred CceEEecCCCC-C---CCCCHHHHHHHHHHhhcCccccCCC-CCHHHHHHHHHHHhC------cCcceEE--EcCCHHHH
Confidence 46799999985 2 2444555555555554322456864 799999999999983 2367998 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +.. + +||+|+++.|+|..|...++..|++++.+++ .+++++|++.+++.+ ++++++++++||||||
T Consensus 85 l~~~--~~~-~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~----~~~~~v~~~~P~NPtG 154 (337)
T PRK03967 85 ISYL--VKL-F-EGKHIVITPPTFGMYSFYAKLNGIPVIDVPL--KEDFTIDGERIAEKA----KNASAVFICSPNNPTG 154 (337)
T ss_pred HHHH--HHH-h-CCCeEEEeCCChHHHHHHHHHcCCeEEEeec--CCCCCcCHHHHHHhc----cCCCEEEEeCCCCCCC
Confidence 8776 332 3 7999999999999998888999999999988 335789999998764 3567888899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++.+++ ++++++|+||+|.+|... ...+ ..+..+++|+++||||.||++|+|+||+++ ++
T Consensus 155 ~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~----~~~~---~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~---~~ 220 (337)
T PRK03967 155 NLQPEEEILKVL----ETGKPVVLDEAYAEFSGK----SLIG---LIDEYPNLILLRTFSKAFGLAGIRAGYAIA---NE 220 (337)
T ss_pred CCCCHHHHHHHH----hcCCEEEEECchhhhccc----chHH---HHhhCCCEEEEecchHhhcchhhhheeeec---CH
Confidence 999988666654 469999999999987632 1111 223346899999999999999999999974 78
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+.... .+.+.++|.++..+|++. +...+.++.+.++++.+.+.|.+.. .+.+
T Consensus 221 ~----~i~~~~~~~~~--~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~--------~~~~ 279 (337)
T PRK03967 221 E----IIDALYRIKPP--FSLNILTMKIVRLALDHY-------DLIEERIDYIIKERERVRRELGEYA--------YPSD 279 (337)
T ss_pred H----HHHHHHhhcCC--CCCCHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHHHHHhccCc--------CCCC
Confidence 8 88888776542 467899999999999764 3344444555666777777776542 3577
Q ss_pred ceeEecCCCHHHHHHHhhhccEEEeCCC-------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 370 GMFCFSGLTPYQVDRLAKEFHIYMTQDG-------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 370 g~~~~~~~~~~~~~~ll~~~gI~i~pgg-------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++|+|+.++ ..+.+ .++||.+++++ ||+++. .++.++++++|+++.+.
T Consensus 280 ~~~~~~~~~--~~~~l-~~~gi~v~~~~~~~~~~~Ri~~~~--~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 280 ANFLLLKLD--AYDYL-LENGIVVRKLSGRLEGHIRVTVGK--REENDEFIKALKEIKEG 334 (337)
T ss_pred CcEEEEhHH--HHHHH-HHCCEEEEeCCCCCCCeEEEecCC--HHHHHHHHHHHHHHHHh
Confidence 899998774 44555 45799997652 999854 56678888888876543
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=302.14 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=237.8
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
..|+|+.++. + .+++ +.+ .......|++.. ..++++++++++ +.+ +++|+ +++|+++++
T Consensus 29 ~~~~l~~Nen--p--~~~~-~~~-------~~~~~~~Yp~~~-~~~l~~~~a~~~-g~~-----~~~I~--~~~Gs~e~i 87 (351)
T PRK01688 29 GDVWLNANEY--P--TAVE-FQL-------TQQTLNRYPECQ-PKAVIENYAAYA-GVK-----PEQVL--VSRGADEGI 87 (351)
T ss_pred CceEecCCCC--C--CCCC-hhh-------cccccccCCCCC-hHHHHHHHHHHh-CCC-----HHHEE--EcCCHHHHH
Confidence 4699999983 1 1222 221 111234486654 479999999996 433 67998 999999999
Q ss_pred HHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 131 RLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 131 ~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
.++ +.+++.+| |+|++++|+|..|...++..|++++.+++ .+++++|++.+++++. ++++++++|||||||
T Consensus 88 ~~~--~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~--~~~~~~d~~~l~~~~~----~~~lv~l~nPnNPTG 159 (351)
T PRK01688 88 ELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT--LDNWQLDLPAIADNLD----GVKVVYVCSPNNPTG 159 (351)
T ss_pred HHH--HHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec--CCCCCCCHHHHHHhcc----CCcEEEEeCCCCCCC
Confidence 998 66677887 99999999999999999999999999998 3358999999988763 578999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
..++.+++++|++.|++ +.+||+||+|.+|.... +...+....+++++++||||.||++|+|+||+++ ++
T Consensus 160 ~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~------s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~---~~ 229 (351)
T PRK01688 160 NLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA------SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLA---NE 229 (351)
T ss_pred CCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC------ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhC---CH
Confidence 99999999999999987 57899999999987431 1222223457899999999999999999999964 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+++... ..+.+.+.|.++..+|.+.. .+++++.++.+.++++.+.+.|+.++. +....+.+
T Consensus 230 ~----~i~~l~~~~~--~~~v~~~~~~~a~~~L~~~~-----~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~ps~ 295 (351)
T PRK01688 230 E----VINLLLKVIA--PYPLSTPVADIAAQALSPQG-----IAAMRERVAEINANRQWLIAALKEIPC---VEQVFDSE 295 (351)
T ss_pred H----HHHHHHhccC--CCCCCHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHhCCC---CCeECCCC
Confidence 8 8888877543 24577778888888887532 145677778888899999999988742 33344567
Q ss_pred ceeEecCC-CHHHH-HHHhhhccEEEeCC----C-----cEEeccCCCCcHHHHHHHH
Q 013839 370 GMFCFSGL-TPYQV-DRLAKEFHIYMTQD----G-----RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 370 g~~~~~~~-~~~~~-~~ll~~~gI~i~pg----g-----Ris~~~~~~e~i~~~~~~l 416 (435)
++|+|+.+ +.+.+ +.| .++||.++++ | ||+++ +.+++++++++|
T Consensus 296 ~nfi~~~~~~~~~l~~~L-~~~gi~vr~~~~~~~~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 296 TNYILARFTASSAVFKSL-WDQGIILRDQNKQPGLSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred CcEEEEEcCCHHHHHHHH-HHCCeEEEECCCcCCCCCeEEEeCC--CHHHHHHHHHhh
Confidence 78999877 34444 555 5689999864 2 99985 468888888876
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=294.27 Aligned_cols=301 Identities=14% Similarity=0.163 Sum_probs=227.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.++|+|+.|+. +.+++. ...... . ...|+.. ..+||++|++++ + +++|+ +|+|++++
T Consensus 20 ~~~i~l~~ne~--p~~~~~-~~~~~~---~-----~~~yp~~--~~~Lr~~ia~~~-~-------~~~I~--it~Gs~~a 76 (330)
T PRK05664 20 ADWLDLSTGIA--PWPWPV-PAIPAD---A-----WARLPET--DDGLEAAARAYY-G-------APQLL--PVAGSQAA 76 (330)
T ss_pred HHheeecCCcC--CCCCCC-cccCHH---H-----HHhCCCC--hHHHHHHHHHHh-C-------CCCEE--ECcCHHHH
Confidence 46799999962 111121 122111 1 1226543 389999999998 3 24788 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ + .+.+||+|++++|+|+.|...++..|++++.+++ +++++.+. +++++++++||||||
T Consensus 77 l~~~--~--~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~----------~~~~~~~~----~~~~v~l~nP~NPTG 138 (330)
T PRK05664 77 IQAL--P--RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE----------AEVEAALD----SLDVLVVVNPNNPTG 138 (330)
T ss_pred HHHH--H--HccCCCEEEEcCCChHHHHHHHHHcCCeEEEech----------hhHhhhhc----CCCEEEEeCCcCCCC
Confidence 8876 3 3579999999999999999999999999998875 13444443 456788899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++|+++|++++++||+||+|.++... +++..+. ..+++++++||||.||++|+|+||+++ ++
T Consensus 139 ~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~------~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~---~~ 208 (330)
T PRK05664 139 RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ------HSLAACA-HRPGLIVLRSFGKFFGLAGARLGFVLA---EP 208 (330)
T ss_pred CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc------ccccccc-cCCCEEEEeeccccccCCCcceEEEEe---CH
Confidence 9999999999999999999999999999876521 1333332 346899999999999999999999974 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+... ..+.+.+.|.++..+|.+. .+.+..+++++++++.+.+.|++++. . +.+
T Consensus 209 ~----l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~~----~---~~~ 268 (330)
T PRK05664 209 A----LLRALAELLG--PWTVSGPTRWLAQAALADT-------PWQRRQRERLLAASQRLAALLRRHGL----T---PAG 268 (330)
T ss_pred H----HHHHHHHhcC--CCCCCHHHHHHHHHHHhCh-------HHHHHHHHHHHHHHHHHHHHHHHCCC----c---ccC
Confidence 8 8888877643 2356788899999999764 34567788999999999999998863 2 233
Q ss_pred c--eeEecCC-CHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 370 G--MFCFSGL-TPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 370 g--~~~~~~~-~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
| +|+|+.. +.+.+.+.+.++||.+.+.+ ||+++. +.++++++.++|+++.++
T Consensus 269 ~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~-~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 269 GCALFQWVRTEDAAALHEFLARRGILTRLFEQPASLRFGLPA-DEADWARLDQALLAYRKE 328 (330)
T ss_pred CcceEEEEecCCHHHHHHHHHHCCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence 4 7888876 45555455567899998753 999975 567788888888776543
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=301.58 Aligned_cols=323 Identities=16% Similarity=0.168 Sum_probs=243.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|.+ +. .+++ .+.+++.+.... ...|+ ..|.+++|+++++++. . ++++|+ +++|++++
T Consensus 22 ~~~i~l~~~~~-~~---~~~~-~~~~a~~~~~~~-~~~y~-~~g~~~lr~~ia~~~~-~-----~~~~I~--~~~G~~~~ 86 (352)
T PRK03321 22 PGAIKLSSNET-PF---GPLP-SVRAAIARAAAG-VNRYP-DMGAVELRAALAEHLG-V-----PPEHVA--VGCGSVAL 86 (352)
T ss_pred ccceeccCCCC-CC---CCCH-HHHHHHHHHHHh-cCcCC-CCcHHHHHHHHHHHhC-c-----CHHHEE--ECCCHHHH
Confidence 36899999985 22 2233 344444433222 34575 4799999999999983 2 266888 89999988
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +..++.+||+|+++.|+|..+...++..|++++.+++. + ++++|++.+++.+. ++++++++++||||||
T Consensus 87 l~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG 159 (352)
T PRK03321 87 CQQL--VQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLT-P-DHTHDLDAMAAAIT---DRTRLIFVCNPNNPTG 159 (352)
T ss_pred HHHH--HHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCC-C-CCCCCHHHHHHhhc---cCCCEEEEeCCCCCcC
Confidence 8777 56668899999999999999988889999999999873 2 36899999999887 5678888999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++.++++.+ ++++++|+||+|.++.+++. ...++... +..+++++++||||.||++|+|+||+++ ++
T Consensus 160 ~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~---~~ 232 (352)
T PRK03321 160 TVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD--VPDGLELV-RDHPNVVVLRTFSKAYGLAGLRVGYAVG---HP 232 (352)
T ss_pred CCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC--CCcHHHHH-hhCCCEEEEecchHHhhhHHHhhhhhcC---CH
Confidence 999999888888865 47999999999999987642 11223222 3346899999999999999999999974 78
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+.+.. ...+.+.++|.++..++...+ .+ .+..+++.++++.+.+.|+..+ +.+. +.+
T Consensus 233 ~----~~~~~~~~~--~~~~~s~~~q~~a~~~l~~~~------~~-~~~~~~~~~~r~~~~~~L~~~~----~~~~-~~~ 294 (352)
T PRK03321 233 E----VIAALRKVA--VPFSVNSLAQAAAIASLAAED------EL-LERVDAVVAERDRVRAALRAAG----WTVP-PSQ 294 (352)
T ss_pred H----HHHHHHHhc--CCCCCCHHHHHHHHHHhcCHH------HH-HHHHHHHHHHHHHHHHHHHHCC----CccC-CCC
Confidence 8 888887653 345788999998888887532 22 3333444556677888998875 3343 346
Q ss_pred ceeEecCC--CHHHHHHHhhhccEEEeCCC----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 370 GMFCFSGL--TPYQVDRLAKEFHIYMTQDG----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 370 g~~~~~~~--~~~~~~~ll~~~gI~i~pgg----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
|+|+|+.+ +.+.+.+.++++||.+.+.+ ||+++ +.+++++++++|++++.
T Consensus 295 g~~i~i~l~~~~~~~~~~l~~~gI~v~~~~~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 295 ANFVWLPLGERTADFAAAAAEAGVVVRPFAGEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred CCEEEEeCCCCHHHHHHHHHHCCEEEEccCCCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 78999876 33444444577999999864 99984 57888999999988754
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=295.49 Aligned_cols=316 Identities=16% Similarity=0.177 Sum_probs=240.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..++.+||+.|++ ...++..+.+.+...+ .. ..+|++..|.+++|+++++++ +. ++++|+ +|+|++
T Consensus 20 ~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~-~~~Y~~~~g~~~lr~aia~~~-~~-----~~~~I~--it~Ga~ 85 (349)
T PRK07908 20 AGPGLLDFAVNVR----HDTPPEWLRERLAARL-GD-LAAYPSTEDERRARAAVAARH-GR-----TPDEVL--LLAGAA 85 (349)
T ss_pred CCCCeEEecCCCC----CCCCCHHHHHHHHHHh-hH-hhcCCCccchHHHHHHHHHHh-Cc-----ChhhEE--ECCCHH
Confidence 3578999999984 1133444433333333 22 456998899999999999997 32 377998 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +. +.+ +.++++.|+|..+...++..|++++.+++. + ++++|++.+ . +++++++++|||||
T Consensus 86 ~al~~~--~~--l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~-~-~~~~d~~~l----~---~~~~~i~l~np~NP 151 (349)
T PRK07908 86 EGFALL--AR--LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLD-P-PFRLDPAAV----P---DDADLVVIGNPTNP 151 (349)
T ss_pred HHHHHH--Hh--cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccC-c-ccCcChhHh----c---cCCCEEEEcCCCCC
Confidence 999877 33 567 456778999999999999999999999983 3 378888754 3 45789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++. ++|+ ++.++|+||+|.++.++. ..++... ..+++++++||||.|+++|+|+||+++
T Consensus 152 TG~~~~~~~l~---~l~~-~~~~iIvDe~y~~~~~~~----~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~--- 218 (349)
T PRK07908 152 TSVLHPAEQLL---ALRR-PGRILVVDEAFADAVPGE----PESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALG--- 218 (349)
T ss_pred CCCCcCHHHHH---HHHh-cCCEEEEECcchhhccCC----ccccccc--cCCCEEEEeecccccCCccceeeeeec---
Confidence 99999988554 4555 477888999998875432 2233221 235799999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.... .+.+.+.+.++..++.+.. .+++++.+++++++++.+.+.|++++ +.+..+
T Consensus 219 ~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~p 283 (349)
T PRK07908 219 APD----VLARLTRGRAH--WPVGTLQLEAIAACCAPRA-----VAEAAADAARLAADRAEMVAGLRAVG----ARVVDP 283 (349)
T ss_pred CHH----HHHHHHhcCCC--CCccHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHhCC----cEeccC
Confidence 788 77777765432 4566677777777776432 25677889999999999999998875 567777
Q ss_pred CcceeEecCCC-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGLT-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.+|+|+|+.+. .+.+...++++||.+.||. |||++ +++++++++++|++++.
T Consensus 284 ~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 284 AAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred CCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 88999999874 4566666788999999861 99993 67899999999988754
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=295.59 Aligned_cols=303 Identities=15% Similarity=0.093 Sum_probs=225.1
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
+.|+|+.++ + |... . .....|+.+ -..+||+++++++ +.. +++|+ +|+|+++++
T Consensus 17 ~~i~l~~Ne----n--p~~~---------~--~~~~~Yp~~-~~~~lr~~ia~~~-~~~-----~~~I~--it~Gs~~~l 70 (332)
T PRK06425 17 RIIDFSANI----N--DFMD---------I--GDISIYPEI-SYTDIEDQIKIYT-QGL-----KIKVL--IGPGLTHFI 70 (332)
T ss_pred CEEEecccc----C--CCcC---------h--hhcccCcCc-CHHHHHHHHHHHh-CCC-----cceEE--ECCCHHHHH
Confidence 689999998 2 2210 0 113347654 4789999999998 333 56888 999999999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCC
Q 013839 131 RLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGV 210 (435)
Q Consensus 131 ~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~ 210 (435)
.++ +. ++.+| .|++++|+|+.|...++..|++++.+|+. + +++|.+.+++ .++++++++|||||||.
T Consensus 71 ~~~--~~-~~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~-~--~~~~~~~l~~------~~~k~v~l~nP~NPTG~ 137 (332)
T PRK06425 71 YRL--LS-YINVG-NIIIVEPNFNEYKGYAFTHGIRISALPFN-L--INNNPEILNN------YNFDLIFIVSPDNPLGN 137 (332)
T ss_pred HHH--HH-HhCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCC-c--ccCcHHHHhh------cCCCEEEEeCCCCCcCC
Confidence 888 43 46776 47777999999999999999999999983 2 3556544432 35788899999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChh
Q 013839 211 DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSK 290 (435)
Q Consensus 211 ~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~ 290 (435)
+++.+++++|+++|++|+++||+||+|.+|.+++ ..+.....+..+++|+++||||.+|+||+|+||+++ +++
T Consensus 138 ~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~----~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~---~~~ 210 (332)
T PRK06425 138 LISRDSLLTISEICRKKGALLFIDEAFIDFVPNR----AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIAT---DDY 210 (332)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEecchhcccccc----chhHHHHhccCCCEEEEeecHHhcCCchhhheeeec---CHH
Confidence 9999999999999999999999999999998653 123333334457899999999999999999999974 888
Q ss_pred HHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcc
Q 013839 291 QAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLG 370 (435)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 370 (435)
+++.+.+.... .+.+.+++ .++.... ++.++++.++.++++++.+.+.|++++ +.+..+.+|
T Consensus 211 ----li~~l~~~~~~--~~~~~~~~----~~l~~~~----~~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~~g 272 (332)
T PRK06425 211 ----NMKISRKITEP--WSVCDPAI----DFIRSID----LDYVAKHSLDIMENERSYLINNLEAMG----FRAAGDPSA 272 (332)
T ss_pred ----HHHHHHHcCCC--CccCHHHH----HHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCCc
Confidence 88877774332 22333322 2232211 235567788999999999999999886 445444466
Q ss_pred eeEecCC-CHH-HHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 371 MFCFSGL-TPY-QVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 371 ~~~~~~~-~~~-~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
.|+|+.+ +.+ +.+.++ ++||.++|+. ||+++ +.++.++++++|++++
T Consensus 273 ~f~~~~~~~~~~~~~~l~-~~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 273 NFITFMIPDAHDFYSYLL-KNGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred eEEEEEcCCHHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 7888876 344 445554 5899999861 99985 4678899999998765
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=298.92 Aligned_cols=311 Identities=12% Similarity=0.122 Sum_probs=238.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
...|+|+.|++ +. +++ +.+ .. .. ...|++. +.++||+++++++ +. ++++|+ +|+|++++
T Consensus 31 ~~~~~l~~ne~-~~---~~~-~~~-----~~-~~-~~~Yp~~-~~~~Lr~aia~~~-~~-----~~~~I~--it~Gs~~~ 89 (354)
T PRK04635 31 RGDIWINANES-PF---NNE-YKL-----DL-AR-LNRYPEC-QPPELINAYSAYA-GV-----APEQIL--TSRGADEA 89 (354)
T ss_pred CCcEEeeCCCC-CC---CCC-hhh-----hh-HH-hccCCCC-CHHHHHHHHHHHh-Cc-----CHHHEE--EeCCHHHH
Confidence 46699999984 11 222 211 11 12 4558775 5799999999986 43 277998 99999999
Q ss_pred HHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..++.+| |+|++++|+|..|...++..|++++.+|+ .+++++|++.++. + +++++++++||||||
T Consensus 90 i~~~--~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~--~~~~~~~~~~l~~-~----~~~~li~i~nP~NPT 160 (354)
T PRK04635 90 IELL--IRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPL--TADYQLPLDYIEQ-L----DGAKLVFICNPNNPT 160 (354)
T ss_pred HHHH--HHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEec--CCCCCCCHHHHHh-c----cCCCEEEEeCCCCCC
Confidence 9998 66677888 99999999999999999999999999998 2357899988863 3 467899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|++.|++ ++||+||+|.+|.... +...+....+++++++||||.+|++|+|+||+++ +
T Consensus 161 G~~~~~~~l~~l~~~~~~--~~vivDeay~~~~~~~------s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~---~ 229 (354)
T PRK04635 161 GTVIDRADIEQLIEMTPD--AIVVVDEAYIEFCPEY------SVADLLASYPNLVVLRTLSKAFALAGARCGFTLA---N 229 (354)
T ss_pred CccCCHHHHHHHHHhCCC--cEEEEeCchHhhccCc------chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhC---C
Confidence 999999999999988764 9999999999887431 2222223457899999999999999999999964 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+... ..+.+.+.|.++..+|.+.. .+.+++.+++++++++.+.+.|++++. +.+.+++
T Consensus 230 ~~----~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~-----~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~ 295 (354)
T PRK04635 230 EE----LIEILMRVIA--PYPVPLPVSEIATQALSEAG-----LARMKFQVLDLNAQGARLQAALSMYGG---AKVLEGN 295 (354)
T ss_pred HH----HHHHHHhhcC--CCCCCHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHhCCC---ceECCCC
Confidence 88 7777776432 34677788888888886543 144667778899999999999998752 4455555
Q ss_pred cceeEecCC-CHHHHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 369 LGMFCFSGL-TPYQVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 369 ~g~~~~~~~-~~~~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
|.|+|+.+ +.+.+.++++++||.++++ + |||++ +.+++++++++|++
T Consensus 296 -g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 296 -GNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred -CcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 56888876 5555655667899999754 1 99984 57888888888865
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=294.74 Aligned_cols=317 Identities=15% Similarity=0.131 Sum_probs=245.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.++|+|++|++ +. +.++++++++.+.+. . ...|+++.+ +++|+++++++. . ++++|. +++|++++
T Consensus 19 ~~~i~l~~~~~-~~---~~~~~~~~a~~~~~~-~-~~~y~~~~~-~~lr~~ia~~~~-~-----~~~~i~--~~~G~~~~ 83 (346)
T TIGR01141 19 KEVIKLNSNEN-PF---GPPPKAKEALRAEAD-K-LHRYPDPDP-AELKQALADYYG-V-----DPEQIL--LGNGSDEI 83 (346)
T ss_pred CceEEccCCCC-CC---CCCHHHHHHHHHhHH-H-hhcCCCCCH-HHHHHHHHHHhC-c-----ChHHEE--EcCCHHHH
Confidence 57999999995 22 445455454444432 2 456887776 899999999984 2 256888 89999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+..+ +..++.+||+|++++|+|+.+...++..|++++.+++. +++.+|++++++.+. ++++++++++|+||||
T Consensus 84 l~~~--~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~---~~~~~v~l~~p~NptG 156 (346)
T TIGR01141 84 IELL--IRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLD--EDGQLDLEDILVAID---DKPKLVFLCSPNNPTG 156 (346)
T ss_pred HHHH--HHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccC--CCCCCCHHHHHHhcC---CCCCEEEEeCCCCCCC
Confidence 8877 66667899999999999999988889999999999883 346799999999875 6788999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.++++++++.++ +++++|+|++|..+...+ ...+. . ...+++++++|+||.+|++|+|+||+++ ++
T Consensus 157 ~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~---~~~~~--~-~~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~ 226 (346)
T TIGR01141 157 NLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP---STLPL--L-AEYPNLIVLRTLSKAFGLAGLRIGYAIA---NA 226 (346)
T ss_pred CCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc---cHHHH--H-hhCCCEEEEehhhHhhhchhhhceeeec---CH
Confidence 9999999999999887 799999999998776532 12221 1 2235789999999999999999999974 78
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.++.... ..+.+.++|.++..++... .+.++.+++++++++.+.+.|++++. +.+. +.+
T Consensus 227 ~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~-~~~ 289 (346)
T TIGR01141 227 E----IIDALNKVRA--PFNLSRLAQAAAIAALRDD-------DFIEKTVEEINAERERLYDGLKKLPG---LEVY-PSD 289 (346)
T ss_pred H----HHHHHHhccC--CCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhcCC---CEEC-CCc
Confidence 8 7777776543 3467888999998888764 35677888999999999999988731 4443 446
Q ss_pred ceeEecCC--CHHHHHHHhhhccEEEeCC-------C--cEEeccCCCCcHHHHHHHHH
Q 013839 370 GMFCFSGL--TPYQVDRLAKEFHIYMTQD-------G--RISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 370 g~~~~~~~--~~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~e~i~~~~~~l~ 417 (435)
|+|+|+.+ +.+.+...|.++||.+.|| + |+|++ ++++++++++.|+
T Consensus 290 g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~--~~~~i~~~~~~l~ 346 (346)
T TIGR01141 290 ANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG--TREENDRFLAALR 346 (346)
T ss_pred CCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC--CHHHHHHHHHHhC
Confidence 78898866 3444544455789999986 2 99974 6788888887763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=292.61 Aligned_cols=324 Identities=16% Similarity=0.169 Sum_probs=238.5
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG 116 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 116 (435)
.....+++. .+..++|+|+.|++ +. .+++..++++...+. . ...|+++.+ +++|+++++++ +.. ++
T Consensus 22 ~~~~~~~~~-~~~~~~i~l~~~~~-~~---~~~~~~~~~~~~~~~-~-~~~y~~~~~-~~lr~~ia~~~-~~~-----~~ 87 (361)
T PRK00950 22 KEEIAREYG-IDPESIIKLGSNEN-PL---GPSPKAVEAIEKELS-K-IHRYPEPDA-PELREALSKYT-GVP-----VE 87 (361)
T ss_pred HHHHHHHhC-CCccceEEccCCCC-CC---CCCHHHHHHHHHHHH-h-hcCCCCCCH-HHHHHHHHHHh-CCC-----HH
Confidence 334444443 23458999999983 22 333344444433333 2 355877554 89999999998 332 56
Q ss_pred CeeeEe-cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 117 RSAGVQ-ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 117 ~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
+++ + ++|+++++.++ +..++.+||+|++++|+|+.+...++..|++++.++. ++++++|++.+++.+. ++
T Consensus 88 ~i~--~~~~Ga~~~i~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~---~~ 158 (361)
T PRK00950 88 NII--VGGDGMDEVIDTL--MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAIT---EK 158 (361)
T ss_pred HEE--EeCCCHHHHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhc---cC
Confidence 777 7 67778887777 5556789999999999999998889999999998885 4567899999999886 56
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++.+ +|+++++++|+||+|.++... +..+ +.+..+++++++||||.+|++
T Consensus 159 ~~~v~~~~p~nptG~~~~~~~l~~---l~~~~~~~li~De~y~~~~~~----~~~~---~~~~~~~vi~~~S~SK~~g~~ 228 (361)
T PRK00950 159 TKVIFLCTPNNPTGNLIPEEDIRK---ILESTDALVFVDEAYVEFAEY----DYTP---LALEYDNLIIGRTFSKVFGLA 228 (361)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHH---HHHHCCcEEEEECchhhhCcc----chHH---HHHhcCCEEEEEeehHhhcCc
Confidence 788888999999999999885554 566789999999999887621 1222 223346899999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ +++.+++.... .+.+.++|.++..++.+. +++++.+++++++++.+.+.|+
T Consensus 229 GlRiG~~~~---~~~----~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~l~- 291 (361)
T PRK00950 229 GLRIGYGFV---PEW----LIDYYMRAKTP--FSLTRLSQAAAIAALSDK-------EYIEKSIEHGIKSREYLYNELP- 291 (361)
T ss_pred hhhcchhcC---CHH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHhhcC-
Confidence 999999964 788 88777775543 357788998888888754 4566677778888888777764
Q ss_pred hCCCCCccccccCcceeEecCC---CHHHH-HHHhhhccEEEeCC------C----cEEeccCCCCcHHHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL---TPYQV-DRLAKEFHIYMTQD------G----RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~ll~~~gI~i~pg------g----Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+.+. +.+++|+|+.+ +.+.+ +.+ .++||.+.|| + ||+++ +.+++++++++|++++
T Consensus 292 ------~~~~-~~~~~~i~~~~~~~~~~~~~~~l-~~~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il 360 (361)
T PRK00950 292 ------FKVY-PSEANFVLVDVTPMTAKEFCEEL-LKRGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIV 360 (361)
T ss_pred ------eeEC-CCcceEEEEECCCCCHHHHHHHH-HHCCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHh
Confidence 1233 45678999865 34444 555 5689999875 1 99985 5678999999998865
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=288.05 Aligned_cols=314 Identities=16% Similarity=0.167 Sum_probs=239.3
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
++..+.+++.. ++++.++|+.|++ +. +++ ..+ ... .....|+++.+ +++|+.+++++ +.+ +
T Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~--~~~----~~~-~~~~~y~~~~~-~~lr~~la~~~-~~~-----~ 64 (330)
T TIGR01140 4 NLRRAAARYGI-PPEDWLDFSTGIN-PL---GPP--VPP----IPA-SAWARYPDPEY-DELRAAAAAYY-GLP-----A 64 (330)
T ss_pred cHHHHHHHcCC-ChhheeEccccCC-CC---CCC--hhh----cch-HHHhhCCCccH-HHHHHHHHHHh-CCC-----h
Confidence 45566677643 6788999999984 22 222 211 111 22456888776 99999999997 322 6
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
+++. +|+|+++++.++ +. .+.+| +|++++|+|..+...++..|.+++.++ |++++++.+. +
T Consensus 65 ~~i~--~t~G~~~~i~~~--~~-~l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~----~ 125 (330)
T TIGR01140 65 ASVL--PVNGAQEAIYLL--PR-LLAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE----E 125 (330)
T ss_pred hhEE--ECCCHHHHHHHH--HH-HhCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc----c
Confidence 7888 999999998886 33 35677 799999999999999999999888774 6788888874 3
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+.. ++....+..+++++++|+||.+|++
T Consensus 126 ~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~------~~~~~~~~~~~~i~~~S~SK~~g~~ 199 (330)
T TIGR01140 126 LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA------SLAPQAARFPGLVVLRSLTKFFGLA 199 (330)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc------chhhHhccCCCEEEEEecchhhcCc
Confidence 5688889999999999999999999999999999999999999887541 2222223457899999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ +++.+..... ..+.+.++|.++..++.+. ++.+..+++++++++.+.+.|++
T Consensus 200 G~R~G~i~~---~~~----~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~ 263 (330)
T TIGR01140 200 GLRLGFVVA---HPA----LLARLREALG--PWTVNGPARAAGRAALADT-------AWQAATRARLAAERARLAALLAR 263 (330)
T ss_pred hhhhhheeC---CHH----HHHHHHhcCC--CCCchHHHHHHHHHHHhch-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999974 777 7777776543 3456788999999999865 34456788999999999999998
Q ss_pred hCCCCCccccccCcceeEecCC-C-HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL-T-PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l 416 (435)
++. +.. .+.+|+|+|+.+ + .++.+.++ ++||.+.||. ||+++. +.++ +.++++|
T Consensus 264 ~~~---~~~-~~~~~~f~~~~~~~~~~l~~~l~-~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 264 LGG---LEV-VGGTALFLLVRTPDAAALHEALA-RRGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred CCC---ceE-CCCCCeEEEEEcCCHHHHHHHHH-HCCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 863 333 355789999977 3 34456664 5899999861 999966 4444 6666665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=277.41 Aligned_cols=294 Identities=15% Similarity=0.112 Sum_probs=207.0
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
..++|+|+.|+. . .+ |+.. .+++.+.... ...|+. ...+|+++++++ + ++|+ +|+|+++
T Consensus 7 ~~~~i~l~~~~n--p--~~-p~~~-~~a~~~~~~~-~~~yp~---~~~l~~~ia~~~-~--------~~I~--vt~G~~~ 65 (311)
T PRK08354 7 EEGLIDFSASVN--P--YP-PEWL-DEMFERAKEI-SGRYTY---YEWLEEEFSKLF-G--------EPIV--ITAGITE 65 (311)
T ss_pred ccceeEecCCCC--C--CC-CHHH-HHHHHHHHHH-hhcCCC---hHHHHHHHHHHH-C--------CCEE--ECCCHHH
Confidence 357999999962 1 12 3333 3334333322 345754 367999999997 2 2677 8999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ + ..+.+||+|++++|+|+.|...++..|++++.++ +|++.+++.+. +++++++++|||||
T Consensus 66 al~~~--~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~----~~~~vi~~~P~NPT 130 (311)
T PRK08354 66 ALYLI--G-ILALRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE----RNSVVFFCNPNNPD 130 (311)
T ss_pred HHHHH--H-HhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc----CCCEEEEecCCCCC
Confidence 98876 3 3445999999999999999999999999887653 57888888775 35678889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++|++|++++|+||+|.+|.+++. .. ..+++++++||||.|+++|+|+||+++
T Consensus 131 G~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~-----~~-----~~~~vi~~~S~SK~~~l~GlRiG~~v~---- 196 (311)
T PRK08354 131 GKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-----SP-----EGENIIKLRTFTKSYGLPGIRVGYVKG---- 196 (311)
T ss_pred CCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc-----cc-----CCCcEEEEeccHhhcCCccceeeeeee----
Confidence 9999999999999999999999999999999987531 11 157899999999999999999999973
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
+.+.+++... ....+..++.++..++.+. + +++...++.+.++++.+.+.+ ..+++
T Consensus 197 ------~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l~~~l----------~~~~~ 252 (311)
T PRK08354 197 ------FEEAFRSVRM--PWSIGSTGYAFLEFLIEDD-----F-EHLRKTMPLIWREKERFEKAL----------YVKSD 252 (311)
T ss_pred ------hHHHHHHcCC--CccCCHHHHHHHHHHHHhH-----H-HHHHHHHHHHHHHHHHHHHhc----------CCCCC
Confidence 2233444332 2344556666666666532 1 333444445555544443332 23466
Q ss_pred cceeEecCC-CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHH
Q 013839 369 LGMFCFSGL-TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 369 ~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
++||+ ..+ +.+.+.+.+.++||.+.||. ||+++. .++.++++++|+++
T Consensus 253 ~~~~~-~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~--~~~~~~l~~al~~~ 309 (311)
T PRK08354 253 ANFFI-KDVGDAEKFVEFLKRNGILVRDCTSFGLPGYIRFSVRD--REENEKLIRALREW 309 (311)
T ss_pred CcEEE-EECCCHHHHHHHHHHCCeEEEecccCCCCCeEEEEeCC--HHHHHHHHHHHHHh
Confidence 77666 444 44444344467899999972 999854 45567777777764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=270.49 Aligned_cols=349 Identities=13% Similarity=0.061 Sum_probs=246.9
Q ss_pred chhhHHHHHhcCCCCCeeeeecceec-CCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcccc
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYR-DDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVK 114 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 114 (435)
.+....++++ ..+.++|+|++|+|. |...+....+...++..++..+ ..+|.+..|.++||+++++++. .
T Consensus 23 ~~~~~~~~l~-~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-~~~Y~~~~g~~~Lreaia~~~~-~------ 93 (460)
T PRK13238 23 TREERERALA-EAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-DEAYAGSRSYYRLEDAVKDIFG-Y------ 93 (460)
T ss_pred CHHHHHHHHH-HcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-CcccCCCCCHHHHHHHHHHHhC-C------
Confidence 3444444553 467899999999973 4422121123444445555555 4569999999999999999983 2
Q ss_pred CCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC------CCC--CcChHhHH
Q 013839 115 EGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP------DSK--SLDFAALM 186 (435)
Q Consensus 115 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~------~~~--~~d~e~l~ 186 (435)
++++ +|+||++|+.++ +.++++||| |++++|.|..|...++..|++++.+++... ++| .+|+++|+
T Consensus 94 -~~vv--~t~ggt~A~~~~--~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le 167 (460)
T PRK13238 94 -PYTI--PTHQGRAAEQIL--FPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLE 167 (460)
T ss_pred -CcEE--ECCCHHHHHHHH--HHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHH
Confidence 2565 899999999988 777899999 999999999999999999999999988421 234 49999999
Q ss_pred HHhhcCC-CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCC--CccCCCC---cccHHHHHHhhhcC
Q 013839 187 DDIKNAP-DSSFFLLHPSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQ--GFASGDL---DKDAQAIRIFLEDE 259 (435)
Q Consensus 187 ~~i~~~~-~~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~--~~~~~~~---~~~~~~~~~~~~~~ 259 (435)
+.+++.. ++++++++++|+|||| .+++.+++++|.++|++||+++|+|+++. ...|... .....++...
T Consensus 168 ~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i---- 243 (460)
T PRK13238 168 ALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI---- 243 (460)
T ss_pred HHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH----
Confidence 9997532 4689999999999997 99999999999999999999999999652 1222100 0001122111
Q ss_pred CeEEEEecccccccccCCcc-----cEEEEEecChhHHHHHHHHHHHHh----hc-cccCCChhHHHHHHHHhCChhhHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRV-----GCLSILCVDSKQAAAIRSQIQQIA----RA-MYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~Rv-----G~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
+..++|++|.+.++|+|+ |++++ +++++ +++.+++.. .. .+.+.+...|.+++..|.+.. .
T Consensus 244 --~~~~~s~~D~~~~Sg~K~g~~~~GG~i~-~~d~~----l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~-~- 314 (460)
T PRK13238 244 --AREMFSYADGLTMSAKKDAMVNIGGLLC-FRDED----LFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM-D- 314 (460)
T ss_pred --hhhhcccCcEEEEecccCCCCcceeEEE-cChHH----HHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-C-
Confidence 334567888887788886 44432 43456 777776653 22 233345555777776665310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------------CHHHHHHHhhhccEEEeCC
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------------TPYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~~~~ll~~~gI~i~pg 396 (435)
+++.... .+++++|.+.|++.| +.+..|.||+|+++++ +.+++.+|+++.||.+.|+
T Consensus 315 --~~~~~~~----~~~~~~l~~~L~~~G----~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~ 384 (460)
T PRK13238 315 --EDYLAYR----IGQVEYLGEGLEEAG----VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEI 384 (460)
T ss_pred --hHHHHHH----HHHHHHHHHHHHHCC----CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecc
Confidence 0222222 235688999998887 4578899999999854 2347789999999999886
Q ss_pred C---------------------cEEecc--CCCCcHHHHHHHHHHHHHh
Q 013839 397 G---------------------RISMAG--VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 g---------------------Ris~~~--~~~e~i~~~~~~l~~~l~~ 422 (435)
| |+++.. .+.+.++++.++|+++.+.
T Consensus 385 ~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 385 GSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred cceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 3 888753 3788899999999987643
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=239.21 Aligned_cols=362 Identities=15% Similarity=0.116 Sum_probs=260.4
Q ss_pred hhhHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C----CCCCCCCCcccHHHHHHHHHhHcCCCC
Q 013839 37 INGVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S----EFLESISASVSTKMVEESVKLVYGKDS 110 (435)
Q Consensus 37 ~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~Y~~~~g~~~lr~~ia~~l~~~~~ 110 (435)
+..+++++.+ ...+..|.|+-|+| ...|......+.....+.. + ..-+|..++|...|.+++++.+...++
T Consensus 16 i~~lMdDl~d~Lrt~g~imLggGNP---a~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg 92 (417)
T COG3977 16 ITQLMDDLNDGLRTPGAIMLGGGNP---ARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG 92 (417)
T ss_pred HHHHHHHHHhhccCCCceeeCCCCc---ccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence 4566666654 13367999999997 3335555555655555542 1 234699999999999999999988888
Q ss_pred ccccCCCeeeEecCCchhHHHHHHHHHH-HhCCC--CEEEEc-CCCChhhHHHHhhCCCCeee----eeecCCC--CCCc
Q 013839 111 DVVKEGRSAGVQALSGTGACRLFAEFQR-RFHPE--SHIYFP-DPTWSNHHNIWRDAQIPERT----YHYYDPD--SKSL 180 (435)
Q Consensus 111 ~~~~~~~v~~~~t~gg~~a~~~~~~~~~-~~~~g--d~Vlv~-~p~y~~~~~~~~~~g~~~~~----v~~~~~~--~~~~ 180 (435)
+.+.+.||. +|+|++.+.+.++.+.+ ....| .+|+.| .|.|.+|.++...-.+ .+. +++.+.. .+..
T Consensus 93 wnit~~NIa--lTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~-fVs~kP~iel~~~g~FKY~v 169 (417)
T COG3977 93 WNITAQNIA--LTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDL-FVSAKPNIELLPAGQFKYHV 169 (417)
T ss_pred CCCccceee--ecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccc-eeeccCCcccccccceeecc
Confidence 888899999 99999999988853332 23345 345555 4889888654221110 111 1111111 1456
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
|.+++.- . ..+.+|+++.|.||||.+++.+++.+|-++|++||+++|+|.+|..-..+ .- ..... +--.+
T Consensus 170 DF~~l~i--~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~-ii--fsd~~--~~w~~ 239 (417)
T COG3977 170 DFEHLHI--G---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPG-II--FSDAT--PLWNE 239 (417)
T ss_pred CHHHccc--c---cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCc-ee--ccccc--ccCCC
Confidence 7666632 2 56899999999999999999999999999999999999999998532211 10 00111 12357
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
+++.|.|+||. |+||.|+|.+++ +++ +++.+.+........+...++.+++.+++.+++.+.-++ -+|.
T Consensus 240 NiilC~SLSK~-GLPG~R~GIiIa---ne~----viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseq---VIrP 308 (417)
T COG3977 240 NIILCMSLSKL-GLPGSRCGIIIA---NEK----VIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQ---VIRP 308 (417)
T ss_pred CEEEEeehhhc-CCCCcceeEEEc---cHH----HHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHH---hhhH
Confidence 99999999998 789999999974 888 999999988777788999999999999998876554322 3445
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEec---C--CCHHHHHHHhhhccEEEeCCC-----------------c
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS---G--LTPYQVDRLAKEFHIYMTQDG-----------------R 398 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~---~--~~~~~~~~ll~~~gI~i~pgg-----------------R 398 (435)
.|+++.+...+.|+..-....|..++|+|..|+|+ + ++.+.+.+.|++.|+.++||. |
T Consensus 309 FY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~R 388 (417)
T COG3977 309 FYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMR 388 (417)
T ss_pred HHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEE
Confidence 56666666666665432233578899999999998 3 355555445588999999982 9
Q ss_pred EEeccCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 399 ISMAGVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 399 is~~~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
+|+.. +++.++.++++|++.+++..+.
T Consensus 389 mn~~~-~~~~ie~Gva~lae~ve~~yq~ 415 (417)
T COG3977 389 MNYVP-EPEKIEKGVAILAEEVERAYQE 415 (417)
T ss_pred EecCC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 99976 8899999999999999876653
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=258.03 Aligned_cols=332 Identities=19% Similarity=0.237 Sum_probs=252.8
Q ss_pred eeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHH
Q 013839 53 INLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRL 132 (435)
Q Consensus 53 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~ 132 (435)
|||+.|.+ +. ...+....+....-.......|.+..|..++++.+++++......+...+++. +++|+++++..
T Consensus 1 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~--~~~~~t~a~~~ 74 (350)
T cd00609 1 IDLSIGEP-DF---PPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIV--VTNGAQEALSL 74 (350)
T ss_pred CCCCCCCC-CC---CCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEE--EecCcHHHHHH
Confidence 57888886 22 33333333333322233356789999999999999999954322112245677 89999999988
Q ss_pred HHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcCh--HhHHHHhhcCCCCcEEEEeCCCCCCCCC
Q 013839 133 FAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDF--AALMDDIKNAPDSSFFLLHPSAHNPTGV 210 (435)
Q Consensus 133 ~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~--e~l~~~i~~~~~~~~~v~~~~p~NPtG~ 210 (435)
+ +..+..+||+|++++|+|.++...++..|.+++.++.. ++...+. +.++.... ++++++++++|+||||.
T Consensus 75 ~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~ 147 (350)
T cd00609 75 L--LRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLD--EEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGA 147 (350)
T ss_pred H--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecc--cccCCccCHHHHHhhcC---ccceEEEEECCCCCCCc
Confidence 8 66667889999999999999999999999999999883 2333443 55555444 67889999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh-
Q 013839 211 DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS- 289 (435)
Q Consensus 211 ~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~- 289 (435)
.++.+++++|.++|+++|+++|+|++|..+.+.+.. . ......+..+.+++++|++|.++.+|.|+||+++ ++
T Consensus 148 ~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~--~-~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~---~~~ 221 (350)
T cd00609 148 VLSEEELEELAELAKKHGILIISDEAYAELVYDGEP--P-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIA---PPE 221 (350)
T ss_pred ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcc--c-ccccCcCccCcEEEEeecccccCCcccceEEEec---CHH
Confidence 999999999999999999999999999887765321 1 1111234456789999999999989999999964 55
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +.+.++......+.+++...+.++..++.... +..++.++++.++++.+.+.|++.+.. ....+.+
T Consensus 222 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~ 288 (350)
T cd00609 222 E----LLERLKKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDALLEALKELGPL---VVVKPSG 288 (350)
T ss_pred H----HHHHHHHHHHhcccCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHhcCCc---cccCCCc
Confidence 7 77777777666667889999999988888653 556788888999999999999988642 2245677
Q ss_pred ceeEecCC----CHHHHHHHhhhccEEEeCC------C----cEEeccCCCCcHHHHHHHHH
Q 013839 370 GMFCFSGL----TPYQVDRLAKEFHIYMTQD------G----RISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 370 g~~~~~~~----~~~~~~~ll~~~gI~i~pg------g----Ris~~~~~~e~i~~~~~~l~ 417 (435)
|+++|+.+ +.+.+.++++++||.+.++ + |++++.. .+++++++++|+
T Consensus 289 g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 289 GFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred cEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 88999866 2456777888899999986 2 9999874 888999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=237.41 Aligned_cols=340 Identities=16% Similarity=0.166 Sum_probs=266.4
Q ss_pred ccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCE
Q 013839 68 VVLQCVREAEAKIA--GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESH 145 (435)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~ 145 (435)
+|..+++++..-+. .+....|..++|++-.|+.+|+++..+++.+.++++|. +|.|++.|+..++.++ +-.+.+.
T Consensus 87 fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~--LT~GAS~ai~~il~l~-~~~~~~G 163 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIF--LTTGASPAIRSILSLL-IAGKKTG 163 (475)
T ss_pred CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHee--ecCCCcHHHHHHHHHH-hcCCCCc
Confidence 34556666655554 34567799999999999999999988888878899999 9999999998884322 1236799
Q ss_pred EEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 013839 146 IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA--PDSSFFLLHPSAHNPTGVDPTEEQWREISYQ 223 (435)
Q Consensus 146 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~ 223 (435)
|++|.|.|+-|...+..+|+..++|.+.++.+|.+|.++|++.+.++ .-+++++++.||.||||.+++.+.+++|+.+
T Consensus 164 vliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~f 243 (475)
T KOG0258|consen 164 VLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICF 243 (475)
T ss_pred eEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHH
Confidence 99999999999999999999999999976678999999999998775 3457899999999999999999999999999
Q ss_pred HHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-c------CCeEEEEecccccc-cccCCcccEEEEEecChhHHHHH
Q 013839 224 FKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-D------EHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAI 295 (435)
Q Consensus 224 ~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~------~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~ 295 (435)
|++++++++.||+|++..|.+. ...+++..... . ....+.++|.||.+ |-.|.|-||+-++..+++ +
T Consensus 244 a~~~~l~llaDEVYQ~Nvy~~~-skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~pr----v 318 (475)
T KOG0258|consen 244 AAEEGLVLLADEVYQDNVYTTG-SKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPR----V 318 (475)
T ss_pred HHHcCeEEechHHHHhhccCCC-cchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChh----H
Confidence 9999999999999999998742 34555544321 1 22457788999985 668999999987555666 6
Q ss_pred HHHHHHHhhccccCCChhHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcce
Q 013839 296 RSQIQQIARAMYGSPPVHGILLVATILSDP----NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGM 371 (435)
Q Consensus 296 ~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 371 (435)
.+.+.+... .-.+++..+|..+......+ .-.+.|......+...+++++..+.+.++++.. +.+.+++|.|
T Consensus 319 ~~qi~Kl~s-i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~g---i~cn~~qGAM 394 (475)
T KOG0258|consen 319 KQQIKKLAS-IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEG---ISCNPVQGAM 394 (475)
T ss_pred HHHHHHHHh-hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCc---eeeccCccce
Confidence 666666443 34567777787776666432 234556677778888999999999999998864 7899999999
Q ss_pred eEecCC---------------CHH-H-HHHHhhhccEEEeCCC-----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 372 FCFSGL---------------TPY-Q-VDRLAKEFHIYMTQDG-----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 372 ~~~~~~---------------~~~-~-~~~ll~~~gI~i~pgg-----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+|..+ .++ + +.+||++.||.++||. |.++-. .. + ..+++++++=.+.
T Consensus 395 Y~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp--~~-~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 395 YLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP--PG-L-EIIEKFKKFHAEF 470 (475)
T ss_pred eecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC--ch-h-HHHHHHHHHHHHH
Confidence 999844 222 3 4889999999999982 888843 33 4 7777777665443
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=236.24 Aligned_cols=333 Identities=14% Similarity=0.118 Sum_probs=234.4
Q ss_pred CCCCeeeeecceecCCCCCcccc---hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVL---QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+.+.+.|..+++..+ +..++ +...++..++..+. ..|.++.|.++|++++++++ +. ++++ .|+
T Consensus 9 ~g~n~~~l~~~~v~iD--lltds~t~ams~~~~~a~~~gd-~~Y~~~~g~~~Leeaia~~~-g~-------~~vv--~t~ 75 (431)
T cd00617 9 AGYNVFLLRSEDVYID--LLTDSGTGAMSDYQWAAMMLGD-EAYAGSKSFYDLEDAVQDLF-GF-------KHII--PTH 75 (431)
T ss_pred cCCCEEeCCCCCcCCC--CCCCCCcHHHHHHHHHHHHhCC-CccCCCCCHHHHHHHHHHHH-CC-------CeEE--EcC
Confidence 6788999999986222 13333 33334445555553 45999999999999999998 33 2555 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC--------CCCcChHhHHHHhhcC-CCC
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD--------SKSLDFAALMDDIKNA-PDS 195 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~e~l~~~i~~~-~~~ 195 (435)
||++|+.++ +.+++.|||.| +++|.|..+...+...|++++.+++.... .+.+|+++|++.+++. .++
T Consensus 76 ~Gt~Al~la--~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~ 152 (431)
T cd00617 76 QGRGAENIL--FSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAEN 152 (431)
T ss_pred CHHHHHHHH--HHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCC
Confidence 999999988 77789999988 68999999999999999999999884221 2459999999999743 234
Q ss_pred cEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC--ccC-----CCCcccHHHHHHhhhcCCeEEEEec
Q 013839 196 SFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG--FAS-----GDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 196 ~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~--~~~-----~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
++++++++||||+ |..++.+++++|.++|++||++||+|++... ..+ ++. ...++. +.++.+.|
T Consensus 153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~--~~~si~------ei~~e~~s 224 (431)
T cd00617 153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGY--RDKSIA------EIAREMFS 224 (431)
T ss_pred ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccc--cCCCHH------HHHHHhhc
Confidence 7899999999998 9999999999999999999999999999321 111 110 111221 12345678
Q ss_pred ccccccccCCc------ccEEEEEecChhHHHHHHHHHHHHh----hcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 268 YAKSMGLYGHR------VGCLSILCVDSKQAAAIRSQIQQIA----RAM-YGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 268 ~SK~~g~~G~R------vG~~~~~~~~~~~~~~~~~~l~~~~----~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+||.+.++|+| .||++ +++++ ++++++... ... ..+.+.....+++..|.+.. + .+
T Consensus 225 ~sd~~~mS~~K~~~~~~GG~i~--~~d~~----l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~------~-~~ 291 (431)
T cd00617 225 YADGCTMSAKKDGLVNIGGFLA--LRDDE----LYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV------E-ED 291 (431)
T ss_pred cCCEEEEEeecCCCCccceEEE--eCcHH----HHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc------c-HH
Confidence 88888888888 45775 54556 666666432 111 12333333333333554321 1 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC-------------HHHHHHHhhhccEEEeCC-------
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT-------------PYQVDRLAKEFHIYMTQD------- 396 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gI~i~pg------- 396 (435)
...++++ +++++.+.|++.| +.+..|.+|+++|++.. .+++.+|+++.||.+..-
T Consensus 292 ~l~~~~~-~r~~l~~~L~~~G----~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~ 366 (431)
T cd00617 292 YLRHRVE-QVRYLGDRLDEAG----VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGR 366 (431)
T ss_pred HHHHHHH-HHHHHHHHHHHCC----CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceeccc
Confidence 3344444 4488999999998 45788999999999542 245678889999997631
Q ss_pred ----C----------cEEecc--CCCCcHHHHHHHHHHHHHh
Q 013839 397 ----G----------RISMAG--VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 ----g----------Ris~~~--~~~e~i~~~~~~l~~~l~~ 422 (435)
| |+++.. .+.+.++++.++|..+.++
T Consensus 367 ~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 367 DPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred CCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 1 887642 3789999999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=232.43 Aligned_cols=327 Identities=14% Similarity=0.111 Sum_probs=222.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCc---cc----HHHHHHHHHhHcCCCCccccCCCeee
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISAS---VS----TKMVEESVKLVYGKDSDVVKEGRSAG 120 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~----~~lr~~ia~~l~~~~~~~~~~~~v~~ 120 (435)
++.++|+|+.|+|+.. ..+++.++++...+... ...|+++. |. .++++++++++. . + +++
T Consensus 36 ~g~~~i~~~~~~~lg~---~~~~~v~~~~~~~~~~~-~~~~~~s~~~~G~~~~~~~le~~ia~~~g-~------~-~~i- 102 (393)
T TIGR01822 36 DGREVLNFCANNYLGL---SSHPDLIQAAKDALDEH-GFGMSSVRFICGTQDIHKELEAKIAAFLG-T------E-DTI- 102 (393)
T ss_pred CCceEEEeeCCCcccc---CCCHHHHHHHHHHHHHh-CCCCCCcCcccCChHHHHHHHHHHHHHhC-C------C-cEE-
Confidence 5678999999998444 55666666666666431 12466655 75 889999999984 3 1 344
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcE
Q 013839 121 VQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSF 197 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~ 197 (435)
++.||++|+..+ +.+++++||+|++++|.|+.+...++..+.+.+.++ .+|++++++.+.+. ..+++
T Consensus 103 -i~~~~~~a~~~~--~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~ 172 (393)
T TIGR01822 103 -LYASCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHR 172 (393)
T ss_pred -EECchHHHHHHH--HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCce
Confidence 678999998877 667789999999999999999888888877765432 36889999988742 12678
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-CCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-EHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G 276 (435)
++++++++||||.+.+ +++|+++|++||+++|+||+|.....+. ...+.....+. .+.+++++|+||.++ |
T Consensus 173 ~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~---~~~~~~~~~~~~~~~di~~~s~sK~l~--g 244 (393)
T TIGR01822 173 LIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGP---TGRGSHELCGVMGRVDIITGTLGKALG--G 244 (393)
T ss_pred EEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCC---CCCchHHhcCCCCCCeEEEEEChHHhh--C
Confidence 9999999999999865 6699999999999999999984322211 11111111121 246799999999874 7
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhc-cccC-CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARA-MYGS-PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
+|+||+++ +++ +++.+++.... ...+ .+...+.++..++... +..++.+++++++++++.+.|+
T Consensus 245 ~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~ 310 (393)
T TIGR01822 245 ASGGFTTA---RKE----VVELLRQRSRPYLFSNSLPPAVVGASIKVLEML-------EASNELRDRLWANTRYFRERME 310 (393)
T ss_pred CCcEEEEe---CHH----HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHH
Confidence 89999864 888 77777654322 2222 2333344444444211 2345677889999999999998
Q ss_pred hhCCCCCccccccCcceeEecCC---C-HHHHHHHhhhccEEEeC-------CC----cEEeccC-CCCcHHHHHHHHHH
Q 013839 355 KLGSSLNWEHITNQLGMFCFSGL---T-PYQVDRLAKEFHIYMTQ-------DG----RISMAGV-TTGNVNYLANAIHE 418 (435)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~ll~~~gI~i~p-------gg----Ris~~~~-~~e~i~~~~~~l~~ 418 (435)
+.|. .+..+.+.++.+.-. + .+++..|+ ++||.+.. .+ |++++.. +++++++++++|++
T Consensus 311 ~~g~----~~~~~~~~~~~i~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~ 385 (393)
T TIGR01822 311 AAGF----DIKPADHPIIPVMLYDAVLAQRFARRLL-EEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTR 385 (393)
T ss_pred HcCC----CCCCCCCCEEEEEeCCHHHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 8763 333444443332211 2 23445554 56999862 12 7776543 78999999999999
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
+.++.+
T Consensus 386 ~~~~~~ 391 (393)
T TIGR01822 386 IGRELG 391 (393)
T ss_pred HHHHhC
Confidence 876543
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=231.61 Aligned_cols=317 Identities=11% Similarity=0.014 Sum_probs=211.1
Q ss_pred eeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHH
Q 013839 52 KINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACR 131 (435)
Q Consensus 52 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~ 131 (435)
.|||++++ + +.|++.+.+++.....+ ...|.|..+..+|++++++++ +.. .+. ++.||++++.
T Consensus 1 ~~~~~~~~----~--~~p~~~~~~a~~~~~~~-~~~Y~~~~~~~~L~~~la~~~-g~~-------~~~--v~~~g~~a~~ 63 (333)
T PRK10534 1 MIDLRSDT----V--TRPSRAMLEAMMAAPVG-DDVYGDDPTVNALQDYAAELS-GKE-------AAL--FLPTGTQANL 63 (333)
T ss_pred Cccccccc----C--CCCCHHHHHHHHhccCC-CcccCCCHHHHHHHHHHHHHh-CCC-------eEE--EeCchHHHHH
Confidence 36777777 2 23556666665554444 455877788999999999997 331 233 6888888877
Q ss_pred HHHHHHHHhCCCCEEEEcCCCChh-hHHH-HhhCC-CCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCC
Q 013839 132 LFAEFQRRFHPESHIYFPDPTWSN-HHNI-WRDAQ-IPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAH 205 (435)
Q Consensus 132 ~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~-~~~~g-~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~ 205 (435)
+. +..++.+||+|+++.|+|.. |... ....+ ++++.++. .+++.+|+++|++++... ..++++++++||+
T Consensus 64 ~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~ 139 (333)
T PRK10534 64 VA--LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDA--AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH 139 (333)
T ss_pred HH--HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecC--CCCCCCCHHHHHHhhcccCcCcccceEEEEecCC
Confidence 76 66678899999999888753 3211 23333 57777776 346889999999988621 0157899998655
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc-EEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG-CLSI 284 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG-~~~~ 284 (435)
||.+++.+++++|+++|++|++++++||+|............ .......+.++ .||||.+|++ +| |++
T Consensus 140 --~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~---~~~~~~~~~~~--~s~SK~~~~~---~G~~~~- 208 (333)
T PRK10534 140 --NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCEL---KEITQYCDSFT--ICLSKGLGTP---VGSLLV- 208 (333)
T ss_pred --CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCH---HHHHhcCCEEE--EEeEcCCCCc---ccceEE-
Confidence 599999999999999999999999999997622110000111 11222223333 4899998754 68 564
Q ss_pred EecChhHHHHHHHHHHHHhhccccC--CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMYGS--PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
+ +++ +++.+++.......+ .+.+.|.++...|.+ .. +..++..+.++++.+.|+++| +
T Consensus 209 -~-~~~----~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~---------~~-~~~~~~~~~r~~l~~~L~~~g----~ 268 (333)
T PRK10534 209 -G-NRD----YIKRARRWRKMTGGGMRQAGILAAAGLYALKH---------NV-ARLQEDHDNAAWLAEQLREAG----A 268 (333)
T ss_pred -c-CHH----HHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh---------hH-HHHHHHHHHHHHHHHHHHhCC----C
Confidence 3 888 888887765532212 223444444444421 11 222234446788999999887 4
Q ss_pred cccccCcceeEecCCC---HHHHHHHhhhccEEEeCCC--cEEec-cCCCCcHHHHHHHHHHHHH
Q 013839 363 EHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQDG--RISMA-GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 363 ~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pgg--Ris~~-~~~~e~i~~~~~~l~~~l~ 421 (435)
.+.++ .++|+|+.+. .+.+.++|+++||.++|+. |++.+ ..+.+++++++++|++++.
T Consensus 269 ~~~~~-~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~~~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 269 DVMRQ-DTNMLFVRVGEEQAAALGEYMRERNVLINASPIVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ccCCC-CceEEEEECCchhHHHHHHHHHHcCeeecCCceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 56656 4778888763 4456667788999999985 88753 3488999999999987753
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=236.00 Aligned_cols=332 Identities=14% Similarity=0.087 Sum_probs=220.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++.|||+.|.|++. +.++...+.+...+..... ..|....|.+++++++++++....+. ++++. +++|
T Consensus 40 ~g~~~i~l~~~~~~~~---~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~--~tsG 111 (397)
T PRK06939 40 DGKEVINFCANNYLGL---ANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAIL--YSSC 111 (397)
T ss_pred CCCeEEEeeccCcccc---CCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEE--EcCh
Confidence 5778999999986343 4555555555555542111 22333578888888888777433222 34555 5554
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEEEEeC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFFLLHP 202 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~v~~~ 202 (435)
++++..+ +.++++|||+|++++|+|+.+...+...|++++.++. .|++++++.+.+ ...++++++++
T Consensus 112 -~~a~~~~--~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~ 181 (397)
T PRK06939 112 -FDANGGL--FETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATD 181 (397)
T ss_pred -HHHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 7787776 6677899999999999999999888999988877653 378888888764 12367888888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+.+||||.. +++++|.++|++|++++|+||+|.....+.. .........-..+.+++++|+||.++ |+|+||+
T Consensus 182 ~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v 254 (397)
T PRK06939 182 GVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGEN--GRGTVEHFGVMDRVDIITGTLGKALG--GASGGYT 254 (397)
T ss_pred cCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCC--CCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEE
Confidence 889999974 4577999999999999999999953222110 01111111111245799999999984 5699999
Q ss_pred EEEecChhHHHHHHHHHHHHhhc-cccCC-ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 283 SILCVDSKQAAAIRSQIQQIARA-MYGSP-PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
++ +++ +++.+...... ...+. +...+.++.++++.. +..++.+++++++++.+.+.|++++.
T Consensus 255 ~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~-- 318 (397)
T PRK06939 255 AG---RKE----VIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL-------EESDELRDRLWENARYFREGMTAAGF-- 318 (397)
T ss_pred Ee---CHH----HHHHHHHhCccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 64 777 77777654332 12222 233334443444211 12246778899999999999988763
Q ss_pred CccccccCcceeEec-C--CC-HHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 361 NWEHITNQLGMFCFS-G--LT-PYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 361 ~~~~~~~~~g~~~~~-~--~~-~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
....+.++++.+. . .+ .+++..+++ +||.+.++ + |++++. .+++++++++++|++++++.
T Consensus 319 --~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 319 --TLGPGEHPIIPVMLGDAKLAQEFADRLLE-EGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred --CcCCCCCCEEEEEECCHHHHHHHHHHHHH-CCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445566665433 2 12 334566654 59998742 1 888753 48899999999999988764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=239.07 Aligned_cols=328 Identities=10% Similarity=0.024 Sum_probs=228.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC------CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG------SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++++.|||+.|++++. ..+++..+++.+++.. +....|.+..++.+|++++++++.. ++.+.
T Consensus 107 ~G~~~id~~s~~~lgl---~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-------~~~i~-- 174 (481)
T PLN02822 107 NGKDVVNFASANYLGL---IGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-------PDSIL-- 174 (481)
T ss_pred CCceEEEeECCCcCCC---CCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-------CCEEE--
Confidence 5678999999987555 3444455555555542 1123578888899999999999842 34565
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---C---CCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---A---PDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~---~~~ 195 (435)
++.|++ ++..+ +.+++++||.|++....+..+...+...|.+++.++.+ |.++++..+++ . .++
T Consensus 175 ~s~G~~-a~~sa--i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~ 244 (481)
T PLN02822 175 YSYGLS-TIFSV--IPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKK 244 (481)
T ss_pred ECCHHH-HHHHH--HHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCC
Confidence 565555 55555 66778999999988777777777778888888888763 23333333321 1 123
Q ss_pred c-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc--CCeEEEEecccccc
Q 013839 196 S-FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED--EHLIGCAQSYAKSM 272 (435)
Q Consensus 196 ~-~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~ 272 (435)
+ ++|+++.++|+||.+.+ +++|.++|++||+++|+||+|....++.. ...+....+. .+.+++++||||.+
T Consensus 245 ~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~---G~G~~e~~~v~~~~~dii~~s~sKal 318 (481)
T PLN02822 245 LRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKS---GRGLSEHFGVPIEKIDIITAAMGHAL 318 (481)
T ss_pred CcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCChHHHcCCCCCCCeEEEecchhhh
Confidence 3 79999999999999998 67999999999999999999985555421 1111122121 35679999999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccC--CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGS--PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
|++| ||+++ +++ +++.++.......++ .|+..+.++.++|+.. +...+.+++++++++++.
T Consensus 319 g~~G---G~i~g---~~~----ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-------~~~~~~~~~l~~~~~~l~ 381 (481)
T PLN02822 319 ATEG---GFCTG---SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EDNPSVLAKLKENIALLH 381 (481)
T ss_pred hhCC---eEEEc---CHH----HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-------HhCHHHHHHHHHHHHHHH
Confidence 9888 99964 888 777777544433443 3466667766676421 222567788999999999
Q ss_pred HHHHhhCCCCCccccccCcceeEecCCC-------------HHHHHHHhhhccEEEeCC------------C-cEEecc-
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGLT-------------PYQVDRLAKEFHIYMTQD------------G-RISMAG- 403 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gI~i~pg------------g-Ris~~~- 403 (435)
+.|++.. ++.+..+.+++++++.+. .+++..+++++||.+.++ + |++++.
T Consensus 382 ~~L~~~~---g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~ 458 (481)
T PLN02822 382 KGLSDIP---GLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAG 458 (481)
T ss_pred HHHHhcC---CcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCC
Confidence 9998862 144555667778777442 235577776789999964 1 887653
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 013839 404 VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~ 423 (435)
.++++|++++++|++++.+.
T Consensus 459 ~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 459 HTESDILKASESLKRVAASV 478 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=234.35 Aligned_cols=376 Identities=15% Similarity=0.109 Sum_probs=241.3
Q ss_pred hhHHHHHhhhhhhhccccccccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCC-CcccchHHHHHHHHh
Q 013839 2 YWRYLTRAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKG-RPVVLQCVREAEAKI 80 (435)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~-~~~~~~~~~~~~~~~ 80 (435)
|.|++-++++-|+-.-+.+..-.+++-+.+...+. .... .+ .....+.+||++.+|..... .+.+.+.+.+++.+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~ 131 (489)
T PLN02483 55 YIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDN-NKTL-KR-TTKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKY 131 (489)
T ss_pred HHHHhhhhcccccCCCCCCCCCCeEEEEEeecCCC-CceE-Ee-cCCCceEEEeecCCccCcCCCCHHHHHHHHHHHHHh
Confidence 77888899999995544433222222222222111 0100 11 12357899999999866543 233455666666665
Q ss_pred cC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH
Q 013839 81 AG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH 157 (435)
Q Consensus 81 ~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~ 157 (435)
.. +....|+...++.++++++|+++. . ++.++ +.+|..+...+ +.+++.+||.|++++|+|..+.
T Consensus 132 g~~~~~sr~~~g~~~~~~ele~~lA~~~g-~------~~ai~---~~~G~~an~~~--i~al~~~Gd~Vi~d~~~h~s~~ 199 (489)
T PLN02483 132 SASTCSSRVDGGTTKLHRELEELVARFVG-K------PAAIV---FGMGYATNSTI--IPALIGKGGLIISDSLNHNSIV 199 (489)
T ss_pred CCCCCccccccCCcHHHHHHHHHHHHHhC-C------CcEEE---ECCHHHHHHHH--HHHhCCCCCEEEEcchhhHHHH
Confidence 42 233458888899999999999994 3 33444 45566665555 6667899999999999999999
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC----CCC-----cE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA----PDS-----SF-FLLHPSAHNPTGVDPTEEQWREISYQFKVK 227 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~----~~~-----~~-~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~ 227 (435)
..++..|++++.++.+ |++++++.+++. .++ .+ ++++....|++|... ++++|+++|++|
T Consensus 200 ~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~---~l~~I~~la~~~ 269 (489)
T PLN02483 200 NGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC---KLPEIVAVCKKY 269 (489)
T ss_pred HHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc---CHHHHHHHHHHc
Confidence 9999999999988752 455665555421 011 24 555555668999775 566999999999
Q ss_pred CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc--
Q 013839 228 GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA-- 305 (435)
Q Consensus 228 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~-- 305 (435)
++++|+||+|.....+............ +..+.+|+++||||.+|++| ||+++ +++ +++.++.....
T Consensus 270 ~~~livDEa~s~g~~G~~G~g~~~~~~v-~~~~~dI~~~SfSKs~g~~G---G~i~~---~~~----li~~l~~~~~~~~ 338 (489)
T PLN02483 270 KAYVYLDEAHSIGAVGKTGRGVCELLGV-DPADVDIMMGTFTKSFGSCG---GYIAG---SKE----LIQYLKRTCPAHL 338 (489)
T ss_pred CCEEEEECcCccCccCCCCCchHHhcCC-CcccCcEEEEecchhcccCc---eEEEc---CHH----HHHHHHHhCcccc
Confidence 9999999998643322100111111111 22356899999999999877 99964 888 88888775432
Q ss_pred -cccCCChhHHHHHHHHhC----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC---
Q 013839 306 -MYGSPPVHGILLVATILS----DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--- 377 (435)
Q Consensus 306 -~~~~~~~~~q~~~~~~l~----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--- 377 (435)
....++...|. +.++|+ +.. .+...+.+++++++++++++.|+++|. .+..+.+++.+|+-+
T Consensus 339 ~~~~~~p~~~~~-~~aaL~~l~~~~g-----~~~~~~~~~~l~~~~~~l~~~L~~~G~----~v~~~~~sp~~~l~l~~~ 408 (489)
T PLN02483 339 YATSMSPPAVQQ-VISAIKVILGEDG-----TNRGAQKLAQIRENSNFFRSELQKMGF----EVLGDNDSPVMPIMLYNP 408 (489)
T ss_pred ccCCcCHHHHHH-HHHHHHHHHhCcc-----ccchHHHHHHHHHHHHHHHHHHHHCCC----cccCCCCCCEEEEEECCH
Confidence 11223333333 333332 110 023345578899999999999999873 344444444444322
Q ss_pred -C-HHHHHHHhhhccEEEeCC---------C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 378 -T-PYQVDRLAKEFHIYMTQD---------G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 378 -~-~~~~~~ll~~~gI~i~pg---------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
. .++.+.++ ++||.+.+. + ||+++. .++|++++++++|+++++.+.
T Consensus 409 ~~~~~~~~~Ll-~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 409 AKIPAFSRECL-KQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred HHHHHHHHHHH-HCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2 24556665 579999842 1 888864 488999999999999987654
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=214.50 Aligned_cols=317 Identities=17% Similarity=0.152 Sum_probs=211.3
Q ss_pred CCCCC-CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH---hC-CC----------CEEEE
Q 013839 84 EFLES-ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR---FH-PE----------SHIYF 148 (435)
Q Consensus 84 ~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~-~g----------d~Vlv 148 (435)
+..+| +...|+|++|+..++.+ +.. +++|+ .||+.++.++...+.. .. +| -+.++
T Consensus 60 D~RNY~G~l~Gipe~r~l~a~ll-gv~-----~~~vi----v~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLC 129 (425)
T PF12897_consen 60 DCRNYPGGLDGIPEARELFAELL-GVP-----PENVI----VGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLC 129 (425)
T ss_dssp BTTSS-S-SS--HHHHHHHHHHH-TS------GGGEE----E-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEE
T ss_pred cccCCCCccCChHHHHHHHHHHh-CCC-----HHHEE----EeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEe
Confidence 45689 88999999999999998 433 55665 5888888887632221 11 11 36799
Q ss_pred cCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhc
Q 013839 149 PDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQ-FKVK 227 (435)
Q Consensus 149 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~-~~~~ 227 (435)
|.|+|..+..+.+.+|++.+.||+. ++ |+|+|.+++.+.+.+....+.+++.-+||||.++|.+..++++++ ....
T Consensus 130 PvPGYDRHFai~E~~Giemi~VpM~-~d--GPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~ 206 (425)
T PF12897_consen 130 PVPGYDRHFAITEHFGIEMIPVPMT-ED--GPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAP 206 (425)
T ss_dssp EES--HHHHHHHHHCT-EEEEEEEE-TT--EE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SST
T ss_pred cCCCchHHHHHHHhhCcEEEecCCC-CC--CCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCc
Confidence 9999999999999999999999994 44 899999999998776667788899999999999999999999998 4467
Q ss_pred CceeeeeccCCCccCC-CCcccH-HHHHH---hhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 228 GHFPFFDMAYQGFASG-DLDKDA-QAIRI---FLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 228 ~~~vi~Deay~~~~~~-~~~~~~-~~~~~---~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
++.|+.|++|.-.... +.+... ..+.. -++..++++.+.|.||.- ++|.+|+++. + +++ .++.++++
T Consensus 207 DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~a--a-S~~----Nl~~~~~~ 278 (425)
T PF12897_consen 207 DFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFA--A-SEA----NLAWIKKH 278 (425)
T ss_dssp T-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEE--E--HH----HHHHHHHH
T ss_pred CeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeee--c-CHH----HHHHHHHH
Confidence 9999999999766652 111111 13322 245678999999999995 5999999995 3 777 77778887
Q ss_pred hhccccCCChhHHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCccccccCcceeEecCC--
Q 013839 303 ARAMYGSPPVHGILLVATILSDP--NLKSLWIDEVKIMADRIQRKRTTLRQNLE-KLGSSLNWEHITNQLGMFCFSGL-- 377 (435)
Q Consensus 303 ~~~~~~~~~~~~q~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~g~~~~~~~-- 377 (435)
....+.++..+.|..-..++++. ++..++++|.+-++.++...-+.|.+.|. ..+. ..+..|+||+|+++..
T Consensus 279 ~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~i---a~Wt~P~GGYFIsld~~~ 355 (425)
T PF12897_consen 279 LSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGI---ASWTKPKGGYFISLDVLD 355 (425)
T ss_dssp HHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTS---EEE---SBSS-EEEEEST
T ss_pred hcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCe---eEecCCCCceEEEEecCC
Confidence 77788999999999999999974 46666666666666666666666666666 4443 4677899999999855
Q ss_pred -CHHHHHHHhhhccEEEeCCC--------------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 378 -TPYQVDRLAKEFHIYMTQDG--------------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 378 -~~~~~~~ll~~~gI~i~pgg--------------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++..+.++.++.||.++|.| ||+.+..+.++++.+++.+.-.++...
T Consensus 356 G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~ 417 (425)
T PF12897_consen 356 GTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAA 417 (425)
T ss_dssp T-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56677777799999999964 999877788999999999987765433
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=227.01 Aligned_cols=322 Identities=15% Similarity=0.088 Sum_probs=213.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CC-CCCCCCCc----ccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SE-FLESISAS----VSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~Y~~~~----g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++++.|||+.|+| -+++.++++++.+.+.+.. +. ...|.... ...++++++++++. . +++++
T Consensus 14 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-~------~~~i~-- 81 (360)
T TIGR00858 14 DGRRLLNFSSNDY---LGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-T------EAALL-- 81 (360)
T ss_pred CCceEEecccCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-C------CCEEE--
Confidence 5778999999975 2334444555544444432 10 11122222 34568888888873 2 34555
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLL 200 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~ 200 (435)
+.+|++++..+ +.+++.+||+|++++|+|..+...++..|++++.++. +|++.+++.+++.. +++++++
T Consensus 82 -~~~G~~~~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 82 -FSSGYLANVGV--ISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred -ECchHHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEE
Confidence 44556665555 5556789999999999999999888999998877653 48889999887432 3578999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
+++++||||...+ +++|.++|+++++++|+||+|..+.++............ ...+++|+++|+||.++++| |
T Consensus 152 ~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~g---G 224 (360)
T TIGR00858 152 TDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGL-KPEPVDIQVGTLSKALGSYG---A 224 (360)
T ss_pred EeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCC-CccCCcEEEEechhhhhccC---c
Confidence 9999999998765 568999999999999999998765543211111121111 12367899999999999776 9
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhc-c-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARA-M-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|+++ +++ +++.+...... . ..+.+...+.++..+++.. ...+..+++++++++++.+.|++++.
T Consensus 225 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 290 (360)
T TIGR00858 225 YVAG---SQA----LIDYLINRARTLIFSTALPPAVAAAALAALELI-------QEEPWRREKLLALIARLRAGLEALGF 290 (360)
T ss_pred EEEc---CHH----HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9864 777 77766544332 1 2234444444555555321 22346678999999999999988763
Q ss_pred CCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIH 417 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~ 417 (435)
.+. +.++.++|+.+. ...+.+.|.++||.+.++ | |+++.. .+.+++++++++|+
T Consensus 291 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 291 ----TLM-PSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred ----ccC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 344 345567777552 333433345689999642 2 999863 37888999888763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=227.92 Aligned_cols=331 Identities=14% Similarity=0.123 Sum_probs=224.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++.|||+.|.+ .+++.++...+.+..++.. + ....|.+..|.+++++++++++....+. ++.+. ++ +
T Consensus 31 ~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~--~~-s 101 (385)
T TIGR01825 31 NGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALV--FQ-S 101 (385)
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEE--EC-c
Confidence 5688999999875 2334555555555555542 2 1345878899999999999998433222 33454 44 5
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~~~~p 204 (435)
|++++.++ +..++.+||.|++++|+|..+...+...|.++..++ .+|++++++.+.+.. +++++++++++
T Consensus 102 G~~a~~~a--~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v 172 (385)
T TIGR01825 102 GFNTNQGV--LSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGV 172 (385)
T ss_pred HHHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecC
Confidence 56776665 566788999999999999998877777887776543 368888888876432 36889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
+||||...+ +++|.++|++||+++|+||+|..+.++.... .....+.-..+.++++.||||.++++| ||+++
T Consensus 173 ~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~ 244 (385)
T TIGR01825 173 FSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAG 244 (385)
T ss_pred CcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcCCCcCCcEEEEeccHHhhcCC---CEEec
Confidence 999999876 5689999999999999999997765531101 111111112467899999999998766 99863
Q ss_pred EecChhHHHHHHHHHHHHhh-cccc-CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 285 LCVDSKQAAAIRSQIQQIAR-AMYG-SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
+++ +++.+..... .... ..+...+.++.+++.... + ..+..+++.++++++.+.|++++.
T Consensus 245 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------~-~~~~~~~~~~~~~~l~~~L~~~g~---- 306 (385)
T TIGR01825 245 ---HKE----LIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQ------R-SPELMERLWDNTRFFKAGLGKLGY---- 306 (385)
T ss_pred ---CHH----HHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh------c-CHHHHHHHHHHHHHHHHHHHHcCC----
Confidence 777 7777765433 2222 234566666666664211 1 123556677788999999988763
Q ss_pred cccccCcceeEec-CC--C-HHHHHHHhhhccEEEeCC-------C----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 363 EHITNQLGMFCFS-GL--T-PYQVDRLAKEFHIYMTQD-------G----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 363 ~~~~~~~g~~~~~-~~--~-~~~~~~ll~~~gI~i~pg-------g----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+..+++.++.+. +. + .++...+++ +||.+.++ | |+++. ..+++++++++++|+++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 307 DTGGSETPITPVVIGDEKAAQEFSRRLFD-EGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHH-CCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4555555543332 21 2 234566655 59998531 2 67653 348999999999999988654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=221.39 Aligned_cols=273 Identities=15% Similarity=0.100 Sum_probs=199.8
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEc---CCCChhhHHHHhhCCCCee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFP---DPTWSNHHNIWRDAQIPER 168 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~---~p~y~~~~~~~~~~g~~~~ 168 (435)
.-+.+|++.+|+++ +.. +++++ +++||.+|+..+ +.++++|||+|+++ .|+|..+...++..|++++
T Consensus 54 ~~~~~Le~~lA~~~-g~~-----~e~il--v~~gg~~a~~~~--~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~ 123 (346)
T TIGR03576 54 IFEEKVQELGREHL-GGP-----EEKIL--VFNRTSSAILAT--ILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYF 123 (346)
T ss_pred HHHHHHHHHHHHHc-CCC-----cceEE--EECCHHHHHHHH--HHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEe
Confidence 34567777777776 332 56777 999999999888 88888999999975 3788888888898898753
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.+ .++++++. . ++++++++ +++||+|.+++.+++++|+++|++|++++|+||+|..+..+...
T Consensus 124 ~~---------~~l~~l~~-~----~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~-- 186 (346)
T TIGR03576 124 ES---------DELSELKK-I----DGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG-- 186 (346)
T ss_pred cc---------CCHHHHhh-C----cCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCC--
Confidence 22 13444322 1 34677666 45799999999999999999999999999999999876532111
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
..+...+ + ..++++|+|| +++|+|+||+++ +++ +++.+.+..+....+++++.|.++.++|+...
T Consensus 187 ~~~~~~~---~-~divv~s~SK--alaG~r~G~v~~---~~~----li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~-- 251 (346)
T TIGR03576 187 QPPALDL---G-ADLVVTSTDK--LMDGPRGGLLAG---RKE----LVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE-- 251 (346)
T ss_pred CCCHHHc---C-CcEEEeccch--hccccceEEEEe---CHH----HHHHHHHhhcCcccCccHHHHHHHHHHHhhcc--
Confidence 1111111 2 2366789999 568999999974 888 88888887765555678888988888886421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCC-------C
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQD-------G 397 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pg-------g 397 (435)
.+..++.++++++.+.+.+++++ +.+++++ |+|+.+. .+++.++++++||.++|+ |
T Consensus 252 ------~~~~~~~l~~r~~~~~~~l~~~~------~~~~~~~-f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~ 318 (346)
T TIGR03576 252 ------LSRIRDAFKRKEEVYLRLFDKLN------VERTPTG-FVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASK 318 (346)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCC------CCcCCCe-EEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCC
Confidence 24567788888888887777543 3344555 7888763 367888889999999995 2
Q ss_pred --cEEeccCCCC---cHHHHHHHHHHHH
Q 013839 398 --RISMAGVTTG---NVNYLANAIHEVT 420 (435)
Q Consensus 398 --Ris~~~~~~e---~i~~~~~~l~~~l 420 (435)
||+++. +++ ++++++++|++.+
T Consensus 319 ~vRis~~~-~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 319 TLRFDLAA-KDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred eEEEEEec-ChHHhcCHHHHHHHHHhcc
Confidence 999975 443 6889999887654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=223.90 Aligned_cols=334 Identities=15% Similarity=0.106 Sum_probs=216.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...|||..|.+.+.-|+ .++.+.+++.+++... ....|+ ..-..+|.+.+++++ +. +++. +++|
T Consensus 25 ~g~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~-g~-------~~~~--~~~s 92 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHVSNLYY-TEPQEELAEKLVEHS-GA-------DRVF--FCNS 92 (379)
T ss_pred CCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHhhC-CC-------CEEE--EeCC
Confidence 5678999999854232332 2334444444444321 112243 233456666666665 32 2566 8999
Q ss_pred chhHHHHHHHHHH-HhC----CCCEEEEcCCCChhhHHHHhhCCCCeee----eeecCCCCCC--cChHhHHHHhhcCCC
Q 013839 126 GTGACRLFAEFQR-RFH----PESHIYFPDPTWSNHHNIWRDAQIPERT----YHYYDPDSKS--LDFAALMDDIKNAPD 194 (435)
Q Consensus 126 g~~a~~~~~~~~~-~~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~--~d~e~l~~~i~~~~~ 194 (435)
|++|+.++..++. ... +||+|++++|+|.++.......+..... .++..+..+. .|++.+++.+. +
T Consensus 93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~ 169 (379)
T TIGR00707 93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID---D 169 (379)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh---h
Confidence 9999998854332 222 3799999999998887666555443321 2221111111 18899999887 5
Q ss_pred CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++.++||+|.. ++.+++++|.++|++|++++|+||+|.++.+.+ ...+.... +...++ .++||.++
T Consensus 170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g---~~~~~~~~-~~~~d~---~t~sK~~~ 242 (379)
T TIGR00707 170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG---KFFAYEHY-GIEPDI---ITLAKGLG 242 (379)
T ss_pred CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhhHHhc-CCCCCE---EEEccccc
Confidence 67888887777778864 689999999999999999999999998876643 11222122 222233 36899999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
+|+|+||+++ +++ +++.+.........+.+.++|.++.++|+.- + ....+++++++++.+++.|
T Consensus 243 -~G~riG~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~-------~-~~~~~~~~~~~~~~~~~~l 306 (379)
T TIGR00707 243 -GGVPIGATLA---KEE----VAEAFTPGDHGSTFGGNPLACAAALAVLEVI-------E-KERLLENVKEKGDYFKERL 306 (379)
T ss_pred -CCcccEEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-------H-hhhHHHHHHHHHHHHHHHH
Confidence 9999999964 777 8887776444445567889999988887521 1 1235566667777777777
Q ss_pred HhhCCCCCccccccCcceeEecCC--CHHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 354 EKLGSSLNWEHITNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
++++....+.... ..|.++|+.+ +.+.+.+.|+++||.+.|++ ||+++. .+++++++++++|++++
T Consensus 307 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 307 EELGKNYPNKEVR-GKGLMLGIELEAPCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred HHHHhhCCCCccc-cCceEEEEEecCcHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 6654221122222 3466777655 34445444567999999875 888643 48899999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=200.41 Aligned_cols=275 Identities=17% Similarity=0.137 Sum_probs=213.9
Q ss_pred cccCCCeeeEecCCchhHHHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh
Q 013839 112 VVKEGRSAGVQALSGTGACRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK 190 (435)
Q Consensus 112 ~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~ 190 (435)
++.+++++ +-.|+.+.+.++ +...|.|| ++++.-.|+|+.|.-.+...+++++.+|+ +.+|.+++|.+.+.++
T Consensus 83 pLt~dnic--~GvGsDE~ID~i--iR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl--~pdF~lnvdai~evl~ 156 (375)
T KOG0633|consen 83 PLTSDNIC--VGVGSDELIDLI--IRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPL--NPDFSLNVDAIAEVLE 156 (375)
T ss_pred CCCccceE--EecCcHHHHHHH--HhheecCCccceeecCCcceeEEEEeecCCceEEEecC--CCCccccHHHHHHHHh
Confidence 46688999 888888888888 67678899 99999999999997777788999999998 5589999999999988
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
.. ...+.+++++|+||||..+..+++++|.+.-. +.+|++||+|.+|.-.+ +-..+.....+.+++.++||
T Consensus 157 ~d-s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~------S~~~lV~kYpNLivlqTlSK 227 (375)
T KOG0633|consen 157 LD-SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVE------SRMKLVKKYPNLIVLQTLSK 227 (375)
T ss_pred cc-ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeecccc------ccchHhHhCCceeehhhhhh
Confidence 65 46899999999999999999999999887655 68999999999988532 22233455688999999999
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.||++|+|+||... +.. ++..+..... ..+.+.++..++..++++... +.++.+++.+.+.+..+.
T Consensus 228 sfGLAGiRvG~~~~---~~~----ia~iln~~Ka--PYNiS~~~s~~AL~Als~~n~-----kkme~~rdaiv~er~RL~ 293 (375)
T KOG0633|consen 228 SFGLAGIRVGYGAF---PLS----IAEILNRAKA--PYNISVAGSVAALAALSDSNG-----KKMEDVRDAIVRERERLF 293 (375)
T ss_pred hcCcceeEeecccc---cHH----HHHHHHhccC--CccccchhHHHHHHhcCcccc-----hHHHHHHHHHHHHHHHHH
Confidence 99999999999953 777 7777766543 356777778888889986542 677888888888888899
Q ss_pred HHHHhhCCCCCccccccCcceeEecCC-------CHHHHHHHhhhccEEEeCC-------C--cEEeccCCCCcHHHHHH
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGL-------TPYQVDRLAKEFHIYMTQD-------G--RISMAGVTTGNVNYLAN 414 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~e~i~~~~~ 414 (435)
..|.++++-. ++..+..+.|+...+ +.....+++.+.||.++=- | ||+.+. +|+-.-+++
T Consensus 294 keLt~v~~~~--~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt--~EentvL~k 369 (375)
T KOG0633|consen 294 KELTEVPFLN--DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGT--PEENTVLMK 369 (375)
T ss_pred HHhhcCcccc--CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCC--cccchHHHH
Confidence 8998876411 233444445665533 3345566667789999732 3 999854 555577888
Q ss_pred HHHHH
Q 013839 415 AIHEV 419 (435)
Q Consensus 415 ~l~~~ 419 (435)
-|+++
T Consensus 370 ~~K~~ 374 (375)
T KOG0633|consen 370 CLKQF 374 (375)
T ss_pred HHHhh
Confidence 87765
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=216.27 Aligned_cols=323 Identities=14% Similarity=0.148 Sum_probs=206.6
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.+++|+.|.+ +.|.+.+.+++.... ......|.|. ..+|++++++++... ... ++.+|+++
T Consensus 6 ~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~l~~~la~~~~~~--------~~~--~~~~Gs~a 67 (353)
T PLN02721 6 RVVDLRSDTV------TKPTDAMRAAMANAEVDDDVLGYDPT--ALRLEEEMAKIFGKE--------AAL--FVPSGTMG 67 (353)
T ss_pred hhhhhhcccc------cCCCHHHHHHHHhccCCCcccCCCHH--HHHHHHHHHHHhCCc--------eeE--EecCccHH
Confidence 5788999986 234455555555432 2223334333 789999999998322 233 57777877
Q ss_pred HHHHHHHHHHhC-CCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC----CCCcEEEEe
Q 013839 130 CRLFAEFQRRFH-PESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA----PDSSFFLLH 201 (435)
Q Consensus 130 ~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~v~~ 201 (435)
..++ +..++. +||+|++++|+|..... .+...|++++.++. .+++.+|++.+++.+++. .++++++++
T Consensus 68 ~~~~--l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l 143 (353)
T PLN02721 68 NLIS--VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKN--NEDGTMDLDAIEAAIRPKGDDHFPTTRLICL 143 (353)
T ss_pred HHHH--HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCC--CcCCCcCHHHHHHHHHhccCCCCCcceEEEE
Confidence 6555 555566 99999999999854433 56778999998886 345679999999999732 136788888
Q ss_pred CC-CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 202 PS-AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 202 ~~-p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
++ ++||||..++.+++++|.++|++||+++|+|++|..........+... +.... ..++.|+||.++. ++|
T Consensus 144 ~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~---~~~~~--d~~~~s~sK~l~~---~~G 215 (353)
T PLN02721 144 ENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHR---LVKAA--DSVSVCLSKGLGA---PVG 215 (353)
T ss_pred eccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHH---HhhhC--CEEEEecccccCC---cee
Confidence 55 688999999999999999999999999999999743221100011111 11112 2345579999873 357
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
|++. . +++ +++.+.........+++..++.++..+. . ++++.+.. ++..++++.+.+.|++++.
T Consensus 216 ~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----l~~~~~~~-~~~~~~~~~l~~~L~~~~~-- 279 (353)
T PLN02721 216 SVIV-G-SKS----FIRKAKRLRKTLGGGMRQVGVLAAAALV---A----LQENVPKL-EDDHKKAKLLAEGLNQIKG-- 279 (353)
T ss_pred eEEe-c-CHH----HHHhHHHHHHhcCCCeehhHHHHHHHHH---H----HHHHHHHH-HHHHHHHHHHHHHHHhCCC--
Confidence 6431 3 777 7666665544322223333332222221 1 11333333 3335567888999988742
Q ss_pred Ccc--ccccCcceeEecCC------CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHH
Q 013839 361 NWE--HITNQLGMFCFSGL------TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 361 ~~~--~~~~~~g~~~~~~~------~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~ 421 (435)
+. ...++++ |+|+.+ +.+.+.+.|.++||.+.|++ |++++ ..+++++++++++|++++.
T Consensus 280 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 280 -LRVNVAAVETN-IVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred -cEEecCCccce-EEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 32 3344444 566643 34445444457999999986 99985 4488999999999998765
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=220.96 Aligned_cols=329 Identities=14% Similarity=0.070 Sum_probs=216.1
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-----CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-----EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
+.+.++|+.++|.. +..++.+++++.+.+.. + ....|+......+|++.+++++. . ++.++
T Consensus 45 ~~~~~~~~sn~yl~---l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g-~------~~~i~--- 111 (410)
T PRK13392 45 PRRVTIWCSNDYLG---MGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG-K------ESALL--- 111 (410)
T ss_pred CceEEEEECCCccC---CCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC-C------CCEEE---
Confidence 45689999988733 34444555555454431 1 01223333346789999999883 2 23444
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEEe
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLLH 201 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~ 201 (435)
+.+|++|+..+...+..+.+||.|++..+.|..+...++..|+++..++. + |++.+++.+... .+++++|++
T Consensus 112 ~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~~~~~t~~v~i 184 (410)
T PRK13392 112 FTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH---N----DLADLEEQLASVDPDRPKLIAF 184 (410)
T ss_pred ECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC---C----CHHHHHHHHHhccCCCCEEEEE
Confidence 56667776666322222348998888777777776777788888766542 1 455666666432 246899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe-EEEEecccccccccCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL-IGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~SK~~g~~G~RvG 280 (435)
++|+||||.+.+ +++|.++|++|++++|+||+|....++.. ...+....+..++ .++++|+||.+|++| |
T Consensus 185 ~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~---g~g~~~~~~~~~~~div~~tlsK~~g~~G---G 255 (410)
T PRK13392 185 ESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR---GGGIAERDGLMDRIDMIQGTLAKAFGCLG---G 255 (410)
T ss_pred eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC---CCchhhhccCCCCCcEEEEEChHhhhccc---c
Confidence 999999999887 66889999999999999999873333211 1111111122223 488899999999888 8
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhcc--ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAM--YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|+++ +++ +++.+++..... ....+.+.+.++.++|+.. +.....+++++++++.+.+.|+++|.
T Consensus 256 ~~~~---~~~----~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~ 321 (410)
T PRK13392 256 YIAA---SAD----LIDFVRSFAPGFIFTTALPPAVAAGATAAIRHL-------KTSQTERDAHQDRVAALKAKLNANGI 321 (410)
T ss_pred hhhc---CHH----HHHHHHHhCcchhccCcCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9963 777 777777655431 2334556677777777532 22234567788899999999998873
Q ss_pred CCCccccccCccee-EecCCC--H-HHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 359 SLNWEHITNQLGMF-CFSGLT--P-YQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 359 ~~~~~~~~~~~g~~-~~~~~~--~-~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+++++++ ++++.. . ++.+.|++++||.+.+. | ||++.. .+++++++++++|.+++++
T Consensus 322 ----~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 322 ----PVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred ----CCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4555666654 344542 2 34466666789999853 2 888742 3889999999999998775
Q ss_pred hh
Q 013839 423 EQ 424 (435)
Q Consensus 423 ~~ 424 (435)
+.
T Consensus 398 ~~ 399 (410)
T PRK13392 398 LE 399 (410)
T ss_pred cC
Confidence 43
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=218.04 Aligned_cols=323 Identities=16% Similarity=0.086 Sum_probs=212.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-CCCCCCCCcc----cHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-EFLESISASV----STKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++++.|||+.|.+ .++..++.+++.+.+.+.. + ....|....| ..++++.+++++ +. ++.+
T Consensus 37 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~------~~~i--- 103 (385)
T PRK05958 37 DGRRMLNFASNDY---LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWF-GA------ERAL--- 103 (385)
T ss_pred CCceEEEeeCCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHh-CC------CcEE---
Confidence 6789999999974 2323344444444444431 1 0112332233 456677777766 21 3334
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.+|++++..+ +..++++||+|++++|+|+.+...+...|++++.++. .|++.+++.++..++.+.++++
T Consensus 104 ~~~~g~~~~~~~--l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~ 174 (385)
T PRK05958 104 LFSSGYAANLAV--LTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVT 174 (385)
T ss_pred EECcHHHHHHHH--HHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEE
Confidence 466777776655 5566889999999999999999888888988887754 3788999988743234678888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
++++||||...+ +++|.++|++||+++|+||+|..+.++...........+ +...+++++.|+||.++.+| ||
T Consensus 175 ~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G---g~ 247 (385)
T PRK05958 175 ESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL-AGEPDVILVGTLGKALGSSG---AA 247 (385)
T ss_pred EecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCC-CCCCceEEEEechhhcccCC---cE
Confidence 889999997655 679999999999999999998654443111111111112 23467899999999998777 88
Q ss_pred EEEEecChhHHHHHHHHHHHHhhc-c-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIARA-M-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+++ +++ +.+.+.+.... . ..+.+...+.++..+++... .. +..++++.++++.+.+.|++++.
T Consensus 248 ~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~------~~-~~~~~~~~~~~~~l~~~L~~~~~- 312 (385)
T PRK05958 248 VLG---SET----LIDYLINRARPFIFTTALPPAQAAAARAALRILR------RE-PERRERLAALIARLRAGLRALGF- 312 (385)
T ss_pred EEc---CHH----HHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh------cC-HHHHHHHHHHHHHHHHHHHHcCC-
Confidence 853 777 66666543322 1 22344444444545554221 11 45678889999999999998763
Q ss_pred CCccccccCcceeEecCC----CH-HHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 360 LNWEHITNQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 360 ~~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
.+.++.++ |+|+.+ +. ++...+ .++||.+.++ | ||+++. .+++++++++++|+++
T Consensus 313 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 313 ---QLMDSQSA-IQPLIVGDNERALALAAAL-QEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred ---CcCCCCCC-EEEEEeCCHHHHHHHHHHH-HHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 45555555 445443 22 344555 5689999752 2 999852 3889999999999875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=220.02 Aligned_cols=335 Identities=13% Similarity=0.099 Sum_probs=212.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||..|.+...-|+ ..+.+.+.+.+++... . +....+..++++++++++..... .+++. +++||+
T Consensus 37 dg~~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~-~--~~~~~~~~~~~~~la~~l~~~~~----~~~v~--~~~gg~ 106 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKL-I--HTSNLYYIEPQEELAEKLVELSG----MDKVF--FCNSGA 106 (396)
T ss_pred CCCEEEECCccHHhccCCC-CCHHHHHHHHHHHhhc-c--ccccccCCHHHHHHHHHHHhhcC----CCEEE--ECCCcH
Confidence 5678999999875332222 1233333333443321 1 11112235677888887744322 35777 999999
Q ss_pred hHHHHHHHHHHHhC-C----CCEEEEcCCCChhhHHHHhhCCCCee----eeeecCCCCC----CcChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFH-P----ESHIYFPDPTWSNHHNIWRDAQIPER----TYHYYDPDSK----SLDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~-~----gd~Vlv~~p~y~~~~~~~~~~g~~~~----~v~~~~~~~~----~~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+..... + .++|++.+++|.++.......+.... ..+. .+++ ..|++++++.+. +
T Consensus 107 eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~l~~~i~---~ 181 (396)
T PRK02627 107 EANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPL--VEGFIYVPFNDIEALKAAIT---D 181 (396)
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCC--CCCceEeCCCCHHHHHHhcC---C
Confidence 99999854332211 1 17899999999877654443332211 1111 1111 128899999886 6
Q ss_pred CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
+++++++++++||+| ..++++.+++|.++|++|++++|+||+|.++.+.+. ..+.... +...+ +.+|||.++
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK~~~ 254 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK---LFAYQHY-GIEPD---IMTLAKGLG 254 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc---eeeehhc-CCCCC---EEEEcchhh
Confidence 789999999999999 688999999999999999999999999998876531 1122111 21122 347999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
+|+|+||+++ +++ +++.+.......+.+.+.+.|.++.++|+... + ....++++++.+.+.+.|
T Consensus 255 -~G~rig~~~~---~~~----~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~------~--~~~~~~~~~~~~~~~~~l 318 (396)
T PRK02627 255 -GGVPIGAVLA---KEK----VADVFTPGDHGSTFGGNPLACAAALAVIEIIE------E--EGLLENAAEVGEYLRAKL 318 (396)
T ss_pred -CCcccEEEEE---cHH----HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh------h--ccHHHHHHHHHHHHHHHH
Confidence 9999999974 777 77777654445566788899999888886432 0 122333444444444444
Q ss_pred HhhCCC-CCccccccCcceeEecCC--CH-HHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 354 EKLGSS-LNWEHITNQLGMFCFSGL--TP-YQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 354 ~~~~~~-~~~~~~~~~~g~~~~~~~--~~-~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
.++... ..+.... ..|.++|+.+ +. +++..++ ++||.+.|++ ||+++ ..+++++++++++|++++++
T Consensus 319 ~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 319 RELLEKYPGIKEVR-GLGLMIGIELDRPAAEIVKKAL-EKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred HHHHHhCCCeeeec-cCcEEEEEEecCcHHHHHHHHH-HCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence 333100 0122222 3467788765 33 3456665 4699999875 88764 34899999999999998864
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-25 Score=216.55 Aligned_cols=286 Identities=15% Similarity=0.102 Sum_probs=199.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCChh----hHHHHhhCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR----FHPESHIYFPDPTWSN----HHNIWRDAQI 165 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~ 165 (435)
+.++|+.+++++.... +++|+ +|.|+++++.++ +.++ +.+||+|++++|.|+. +...++..|+
T Consensus 62 ~~~~r~~la~~~g~~~-----~~~i~--~t~g~t~~l~~~--~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~ 132 (398)
T TIGR03392 62 YELARQQVARFLNAPD-----AENIV--WTRGTTESINLV--AQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGA 132 (398)
T ss_pred HHHHHHHHHHHhCCCC-----CCeEE--EeCChHHHHHHH--HHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCc
Confidence 5679999999984321 45788 899999999988 4444 5799999999999865 3455678899
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. +.++.+|++++++++. ++++++++++|+||||..++. ++|+++|+++|+++++|++|...... .
T Consensus 133 ~v~~v~~--~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~~---~~i~~~~~~~~~~~ivD~a~~~~~~~-~ 203 (398)
T TIGR03392 133 KVVKLPI--GADLLPDIRQLPELLT---PRTRILALGQMSNVTGGCPDL---ARAITLAHQYGAVVVVDGAQGVVHGP-P 203 (398)
T ss_pred EEEEEec--CCCCCcCHHHHHHHhc---cCceEEEEECccccccccCCH---HHHHHHHHHcCCEEEEEhhhhcCCCC-C
Confidence 9999987 3346789999999997 678999999999999999864 58999999999999999998543321 1
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------h
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------R 304 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~ 304 (435)
.+.. .+.++++.|++|.+|++| +||+++ +++ +++.+.... +
T Consensus 204 -----~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (398)
T TIGR03392 204 -----DVQA----LDIDFYAFSGHKLYGPTG--IGVLYG---KTE----LLEAMPPWQGGGKMLSHVSFDGFIPQAVPHR 265 (398)
T ss_pred -----Chhh----cCCCEEEEecccccCCCc--eEEEEE---cHH----HHhhCCCeecCCceEeeccccccccCCChhh
Confidence 1111 134577888899998666 899964 777 555443211 0
Q ss_pred ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEec--CCCHHH
Q 013839 305 AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFS--GLTPYQ 381 (435)
Q Consensus 305 ~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~ 381 (435)
.-..+++..+..++..++.--. +...++.+++..+.++.+.+.|++++. +.... +..+++.|. +.+.+.
T Consensus 266 ~e~GT~~~~~~~a~~~al~~l~-----~~g~~~i~~~~~~l~~~l~~~l~~l~g---~~~~~~~~~~i~~~~~~~~~~~~ 337 (398)
T TIGR03392 266 FEAGTPNIAGVIGLSAALEWLT-----DIDIAAAEAWSVSLADLAEERLAQLPG---FRSFRCPGSSLLAFDFAGVHHSD 337 (398)
T ss_pred ccCCCCCHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCCCCcEEEEEeCCcCHHH
Confidence 1112344445555555553210 122345667778888888888887632 33332 233333322 455566
Q ss_pred HHHHhhhccEEEeCC--------------C--cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 382 VDRLAKEFHIYMTQD--------------G--RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 382 ~~~ll~~~gI~i~pg--------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
+...|+++||.+++| | |+|+.. .+.+|+++++++|+++++.+
T Consensus 338 l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 338 LAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 655567899999753 2 999753 37899999999999987653
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=215.73 Aligned_cols=285 Identities=13% Similarity=0.094 Sum_probs=196.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY 173 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 173 (435)
...+++.+|+++ +.+ .+. +++|+++++..+ +.+++.+||+|++..+.|......++..|++++.++..
T Consensus 53 ~~~~~e~lA~~~-g~~-------~~~--i~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~ 120 (370)
T TIGR02539 53 IHDFLEDLAEFL-GMD-------EAR--VTHGAREGKFAV--MHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHT 120 (370)
T ss_pred HHHHHHHHHHHh-CCC-------ceE--EECChHHHHHHH--HHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecC
Confidence 467888888887 432 334 689999999888 77778999999999888655556778899999999874
Q ss_pred CCCCCCcChHhHHHHhhcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 174 DPDSKSLDFAALMDDIKNA----PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
.++++.+|+++|++.+.+. .+++++|++++|+||||...+ +++|.++|+++++++|+|++|.....+ . +
T Consensus 121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~-~--~- 193 (370)
T TIGR02539 121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP-V--S- 193 (370)
T ss_pred CcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC-C--C-
Confidence 3346889999999998631 125789999999999998765 558889999999999999998764321 1 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcccc--------CCChhHHHHHHHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG--------SPPVHGILLVATI 321 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~q~~~~~~ 321 (435)
.. . .+..++++|+||+++ +|.|+||+++ +++ +++.++....+... ......+.++..+
T Consensus 194 --~~---~-~~~di~v~s~sK~~~-~~g~~G~l~~---~~~----~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 259 (370)
T TIGR02539 194 --AK---E-IGADFIVGSGHKSMA-ASGPCGVLGM---SEE----WEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMAS 259 (370)
T ss_pred --HH---H-cCCCEEEeeCccccc-CCCCEEEEEE---CHH----HHhhhcccccCCccceeeeecccccccHHHHHHHH
Confidence 11 1 134567799999999 5778999974 788 77777765432111 1111233334344
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc--cccCcceeEecCCC------------HHHHHHHhh
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH--ITNQLGMFCFSGLT------------PYQVDRLAK 387 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~g~~~~~~~~------------~~~~~~ll~ 387 (435)
+... .++++...+.++. ++++++.|+++|+ .. ..+..+.|+++.+. ...+.+.|+
T Consensus 260 l~~~------~~~l~~~~~~~~~-~~~l~~~L~~~g~----~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~ 328 (370)
T TIGR02539 260 FPHV------VERVKRWDEEVKK-TRWFVAELEDIGF----IQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK 328 (370)
T ss_pred HHHH------HHHHHHHHHHHHH-HHHHHHHHHhCCc----EEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH
Confidence 4321 2444444444444 4589999998874 32 22344556655331 124555556
Q ss_pred hccEE-EeCCC----cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 388 EFHIY-MTQDG----RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 388 ~~gI~-i~pgg----Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++||. ++++. |+++...+++++++++++|++++++
T Consensus 329 e~GI~~ir~~~~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 329 KRGIHGIRSGQTKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred hCCCccccCCcceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 78997 77763 8886445899999999999988764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=217.13 Aligned_cols=286 Identities=18% Similarity=0.150 Sum_probs=201.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCChh----hHHHHhhCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR----FHPESHIYFPDPTWSN----HHNIWRDAQI 165 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~ 165 (435)
..++|+.+++++...+ +++|. +++|+++++.+++ .++ +.+||+|++++|.|+. +...++..|+
T Consensus 65 ~~~~r~~la~~~g~~~-----~~~i~--~~~~~t~~i~~~~--~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLNAPD-----AKNIV--WTRGTTESINLVA--QSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGA 135 (401)
T ss_pred HHHHHHHHHHHcCCCC-----CCEEE--EECCHHHHHHHHH--HHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCC
Confidence 5689999999884322 56788 8999999999884 433 5799999999999864 4455678899
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. ++++.+|++++++.+. ++++++++++|+||||..++. ++|+++|+++|+++|+|++|....+. .
T Consensus 136 ~v~~v~~--~~~~~~d~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~~---~~i~~l~~~~g~~~ivD~a~~~g~~~-~ 206 (401)
T PRK10874 136 KVVKLPL--GADRLPDVDLLPELIT---PRTRILALGQMSNVTGGCPDL---ARAITLAHQAGMVVMVDGAQGAVHFP-A 206 (401)
T ss_pred EEEEEec--CCCCcCCHHHHHHhcC---cCcEEEEEeCCcccccCcCCH---HHHHHHHHHcCCEEEEECCccccccc-C
Confidence 9999987 3456789999999997 678999999999999999865 58999999999999999997532221 1
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------h
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------R 304 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~ 304 (435)
++. ..+.++++.|++|.+|.+| +||+++ +++ +++.+.... +
T Consensus 207 -----~~~----~~~~d~~~~s~~K~~gp~G--~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (401)
T PRK10874 207 -----DVQ----ALDIDFYAFSGHKLYGPTG--IGVLYG---KSE----LLEAMSPWQGGGKMLTEVSFDGFTPQSAPWR 268 (401)
T ss_pred -----Cch----hcCCCEEEEecccccCCCc--cEEEEE---chH----HHhcCCCeecCCcceEeeccCccCCCCChhh
Confidence 111 1134678899999998777 588864 777 555443211 1
Q ss_pred ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEec--CCCHHH
Q 013839 305 AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFS--GLTPYQ 381 (435)
Q Consensus 305 ~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~ 381 (435)
....+++..++.++..++..-. +......+++.++.++++.+.|++++. +.... +..+++.|. +++.+.
T Consensus 269 ~e~Gt~~~~~~~al~~al~~l~-----~~g~~~~~~~~~~l~~~l~~~l~~~~g---~~~~~~~~~~i~~~~~~~~~~~~ 340 (401)
T PRK10874 269 FEAGTPNVAGVIGLSAALEWLA-----DIDINQAESWSRSLATLAEDALAKLPG---FRSFRCQDSSLLAFDFAGVHHSD 340 (401)
T ss_pred ccCCCcCHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCCcEEEEEECCcCHHH
Confidence 1123445556666666663211 122345667777888889998887631 33333 333333322 445566
Q ss_pred HHHHhhhccEEEeCC--------------C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 382 VDRLAKEFHIYMTQD--------------G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 382 ~~~ll~~~gI~i~pg--------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+.+.|+++||.+.+| | |+|+... +++++++++++|+++++.+
T Consensus 341 ~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 341 LVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred HHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 655667799999762 2 9998533 7899999999999987653
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=211.42 Aligned_cols=307 Identities=14% Similarity=0.010 Sum_probs=205.0
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEE
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYF 148 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv 148 (435)
|++.+.+++.+.... ...|.+.....++++.+++++. . ++++ ++.||++++.++ +..++.+||+|++
T Consensus 10 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~~a~~~g-~-------~~~~--~~~~gt~a~~~~--~~~l~~~gd~v~~ 76 (338)
T cd06502 10 PTPEMLEAMAAANVG-DDVYGEDPTTAKLEARAAELFG-K-------EAAL--FVPSGTAANQLA--LAAHTQPGGSVIC 76 (338)
T ss_pred CCHHHHHHHHhcccC-CcccCCCHHHHHHHHHHHHHhC-C-------CeEE--EecCchHHHHHH--HHHhcCCCCeEEE
Confidence 444445444442222 2357777778899999999884 1 2455 688999998877 6667889999999
Q ss_pred cCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 149 PDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP----DSSFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 149 ~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~----~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
++|+|..+.. .....|++++.++. +. +.+|++++++++.+.. ++++++++++|+|| |.+++.+++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~ 152 (338)
T cd06502 77 HETAHIYTDEAGAPEFLSGVKLLPVPG--EN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS 152 (338)
T ss_pred ecCcceeeecCCcHHHHcCceEEeecC--CC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence 9999865432 34457999988876 22 5799999999987421 26799999999998 5566999999999
Q ss_pred HHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 222 YQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
++|++||+++|+|++|..+....... ++..... ...+++.|+||.++++| |+++ ..+++ +++.++.
T Consensus 153 ~~~~~~~~~livDea~~~~~~~~~~~---~~~~~~~--~~d~~~~s~sK~~~~~~---g~~~--~~~~~----~~~~~~~ 218 (338)
T cd06502 153 ALAKENGLPLHLDGARLANAAAALGV---ALKTYKS--GVDSVSFCLSKGGGAPV---GAVV--VGNRD----FIARARR 218 (338)
T ss_pred HHHHHcCCeEeechHHHHHHHHhcCC---CHHHHHh--cCCEEEEeccccCCCcc---ceEE--ECCHH----HHHHHHH
Confidence 99999999999999975432110001 1111111 22356889999999887 5543 22777 7777766
Q ss_pred Hhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec-CCC
Q 013839 302 IARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS-GLT 378 (435)
Q Consensus 302 ~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~-~~~ 378 (435)
.... ...+.+.+.+.++...|.... + .+..+++.++++++.+.|+++|. .+.++.++++.+. .-.
T Consensus 219 ~~~~~~~~~~~~~~~~~a~~~~L~~~~-------~-~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~v~~~~~ 286 (338)
T cd06502 219 RRKQAGGGMRQSGFLAAAGLAALENDL-------W-LRRLRHDHEMARRLAEALEELGG----LESEVQTNIVLLDPVEA 286 (338)
T ss_pred HHHHhCCChhhHHHHHHHHHHHhcCch-------H-HHHHHHHHHHHHHHHHHHHhcCC----CcccccCCeEEEecCCc
Confidence 4432 223455667777777776532 1 23446677777889999988874 3445565544322 212
Q ss_pred HHHHHHHhh------hccEEEeCCC----cEEeccC-CCCcHHHHHHHHHH
Q 013839 379 PYQVDRLAK------EFHIYMTQDG----RISMAGV-TTGNVNYLANAIHE 418 (435)
Q Consensus 379 ~~~~~~ll~------~~gI~i~pgg----Ris~~~~-~~e~i~~~~~~l~~ 418 (435)
......+++ ++|+.+.+.+ |+++... ++++++++++++++
T Consensus 287 ~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 287 NAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 222223322 5799998763 8887533 78889999988864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=217.11 Aligned_cols=326 Identities=15% Similarity=0.142 Sum_probs=214.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhc-------CCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-------GSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~ 119 (435)
++.++|..|+- ..++.+++++.... .+....|....+.+.+++.+.+.+ ++.. ..++.
T Consensus 19 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-----~~~v~ 86 (402)
T cd00378 19 RETLELIASEN-------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE-----YANVQ 86 (402)
T ss_pred HhCeeeeccCC-------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC-----ceeee
Confidence 57889988872 22344555544321 111233656667777777544332 3442 22343
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-----HhhCCCCeeeeeecCC-CCCCcChHhHHHHhhcCC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-----WRDAQIPERTYHYYDP-DSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~i~~~~ 193 (435)
+.+|++|+.++ +.++++|||+|++++|+|+.+... ++..|.++..+++..+ +++.+|++++++.+..
T Consensus 87 ---~~sgt~a~~~~--l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~-- 159 (402)
T cd00378 87 ---PHSGSQANLAV--YFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE-- 159 (402)
T ss_pred ---cCCcHHHHHHH--HHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh--
Confidence 44678998877 777789999999999999876443 5667877766665322 2689999999999853
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++++++++|+||+. .++++|.++|++||+++|+|++| .++.+.+. ...++ . . ..++++|+||.+
T Consensus 160 ~~~~~v~~~~~~~~~~-----~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~~~~----~-~-~dv~~~s~sK~l 226 (402)
T cd00378 160 FKPKLIVAGASAYPRP-----IDFKRFREIADEVGAYLLVDMAHVAGLVAGGV--FPNPL----P-G-ADVVTTTTHKTL 226 (402)
T ss_pred CCCCEEEecCcccCCC-----cCHHHHHHHHHhcCCEEEEEccchhhhhhccc--CCCcc----c-C-CcEEEeccccCC
Confidence 4578888888888753 24779999999999999999994 44443321 01111 1 1 237899999987
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCC-hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPP-VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQ 351 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
+|+|.||++ +.+++ +++.+.+.......+.+ ...+.++..++.... ....++.+++++++++++.+
T Consensus 227 --~G~~gg~i~--~~~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~ 293 (402)
T cd00378 227 --RGPRGGLIL--TRKGE----LAKKINSAVFPGLQGGPHLHVIAAKAVALKEAL-----EPEFKAYAKQVVENAKALAE 293 (402)
T ss_pred --CCCCceEEE--eccHH----HHHHHHHHhCccccCCchHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHH
Confidence 789999996 43437 77777664433323332 233333333332211 12456677889999999999
Q ss_pred HHHhhCCCCCcccc-ccCcceeEecCC-----CHHHHHHHhhhccEEEeCC-------------C-cEEecc-----CCC
Q 013839 352 NLEKLGSSLNWEHI-TNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD-------------G-RISMAG-----VTT 406 (435)
Q Consensus 352 ~l~~~~~~~~~~~~-~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg-------------g-Ris~~~-----~~~ 406 (435)
.|+++|. .+. .+.+++++|+.+ +.+.+.++++++||.+.+. + ||++.. .++
T Consensus 294 ~L~~~g~----~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~ 369 (402)
T cd00378 294 ALKERGF----KVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGE 369 (402)
T ss_pred HHHhCCC----eEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCH
Confidence 9988863 343 456788998865 3456666778899999631 1 887643 358
Q ss_pred CcHHHHHHHHHHHHHhhh
Q 013839 407 GNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~~ 424 (435)
++++++++.|++++++..
T Consensus 370 ~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 370 EEMEEIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-25 Score=214.15 Aligned_cols=331 Identities=16% Similarity=0.118 Sum_probs=216.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++.+||..|.+.+.-|+ ..+.+.+.+.+++.. + ....|+...+ .+|.+.+++++ +.. .++++. +++|
T Consensus 41 dg~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~~-~~~----~~~~v~--~~~s 111 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVELL-GAP----EGGRVF--FCNS 111 (398)
T ss_pred CCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHhC-CCC----CCCEEE--EeCc
Confidence 5688999998864222222 233444444444432 1 1234655433 46666676664 221 135777 9999
Q ss_pred chhHHHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhh-CCCC------------eeeeeecCCCCCCcChHhHHHHhhc
Q 013839 126 GTGACRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRD-AQIP------------ERTYHYYDPDSKSLDFAALMDDIKN 191 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~~~~~d~e~l~~~i~~ 191 (435)
|++|+..+..+... +| ++|+..+++|.++...... .|.. +..+|. .|++.+++.+.
T Consensus 112 gsea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~- 181 (398)
T PRK03244 112 GAEANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVD- 181 (398)
T ss_pred hHHHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhc-
Confidence 99999998544333 45 5777778899877543332 2211 112211 37889998885
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 192 APDSSFFLLHPSAHNPTGVDPTEEQ-WREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
++++++++++++||||.+++.++ +++|.++|++||+++|+||+|.+++..+ ....... .+...+ +.+|||
T Consensus 182 --~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~~-~~~~pD---i~t~sK 252 (398)
T PRK03244 182 --DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG---AWFAHQH-DGVTPD---VVTLAK 252 (398)
T ss_pred --CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc---hHHhhhh-hCCCCC---EEEEch
Confidence 57889999999999999997655 9999999999999999999998876643 1122111 122222 247899
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.++ +|+|+||+++ +++ +++.+.......+.+.+.+++.++.+.|+.-. .....++++++.+.+.
T Consensus 253 ~l~-~G~~ig~~~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~~~~~~~~~l~ 316 (398)
T PRK03244 253 GLG-GGLPIGACLA---FGP----AADLLTPGLHGSTFGGNPVACAAALAVLDTIA--------SEGLLENAERLGEQLR 316 (398)
T ss_pred hhh-CCcccEEEEE---cHH----HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHH
Confidence 999 8999999975 777 77766654444556788888888888875211 1234566677778888
Q ss_pred HHHHhhCCCCCccccccCcceeEecCCC---HHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+.|++++.+. +... ...|.+.|+.+. ...+.+.+.++||.+.+.+ |+++.. .+++++++++++|++++++
T Consensus 317 ~~L~~~~~~~-~~~v-~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 317 AGIEALGHPL-VDHV-RGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred HHHHhcCCCc-eeeE-eeccEEEEEEEeccHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 8888765321 1122 235678887663 3334334456899998864 888654 5889999999999999876
Q ss_pred hh
Q 013839 423 EQ 424 (435)
Q Consensus 423 ~~ 424 (435)
..
T Consensus 395 ~~ 396 (398)
T PRK03244 395 AA 396 (398)
T ss_pred cc
Confidence 43
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=213.38 Aligned_cols=340 Identities=13% Similarity=0.065 Sum_probs=209.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.....-|. ..+.+++++.+++... .. ... ....+....+++.+..... .+++. ++++|
T Consensus 28 ~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~-~~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~--~~~sG 97 (389)
T PRK01278 28 EDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKL-WH-VSN-LYRIPEQERLAERLVENSF----ADKVF--FTNSG 97 (389)
T ss_pred CCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhc-Cc-ccc-ccCChHHHHHHHHHHhhCC----CCEEE--EcCCc
Confidence 35678999988742121232 2334444455554321 11 111 1112233444444422211 24677 89999
Q ss_pred hhHHHHHHHHHHH--hCCCC----EEEEcCCCChhhHHHHhhCCCCeeeeeecC--CCCCC----cChHhHHHHhhcCCC
Q 013839 127 TGACRLFAEFQRR--FHPES----HIYFPDPTWSNHHNIWRDAQIPERTYHYYD--PDSKS----LDFAALMDDIKNAPD 194 (435)
Q Consensus 127 ~~a~~~~~~~~~~--~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~----~d~e~l~~~i~~~~~ 194 (435)
++|++.+..+... +.+|| +|++.+++|.++.......+.......... .+++. .|++.+++.+. +
T Consensus 98 seA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~ 174 (389)
T PRK01278 98 AEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT---P 174 (389)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC---C
Confidence 9999998643322 35676 899999999988766555443322211000 11111 58899999887 5
Q ss_pred CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++|+++.++||+| ..++.+.+++|.++|++||+++|+||+|.++...+. ......+ +.... +.++||.++
T Consensus 175 ~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK~l~ 247 (389)
T PRK01278 175 NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAHEWA-GVTPD---IMAVAKGIG 247 (389)
T ss_pred CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceeeccc-CCCCC---EEEEehhcc
Confidence 788999988899999 788999999999999999999999999998866431 1111111 11111 358999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
+|+|+||+++ +++ +++.+.......+.+.+.+.|.++.+.|+.-. .+.+.+++++..++++++.+.+.
T Consensus 248 -~G~~ig~~~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~l~~l~--- 315 (389)
T PRK01278 248 -GGFPLGACLA---TEE----AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVIL-APGFLDNVQRMGLYLKQKLEGLV--- 315 (389)
T ss_pred -CCcceEEEEE---cHH----HHhccCCCCCCCCCCccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHH---
Confidence 8999999974 777 77777665555667788898888877774211 00122333333333333333221
Q ss_pred HhhCCCCCccccccCcceeEecCC--CH-HHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 354 EKLGSSLNWEHITNQLGMFCFSGL--TP-YQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~~~--~~-~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
+..+ ..+....+ .|++.++.+ +. ++...+++ +||.+.|++ ||+++ ..+++++++++++|++++++
T Consensus 316 ~~~~--~~~~~v~g-~G~~~~i~~~~~~~~~~~~l~~-~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 316 DRFP--DVIEEVRG-KGLLLGLKCVVPNRDLVQALRD-EGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred hhCC--CceeeEec-ccEEEEEEEecCHHHHHHHHHH-CCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 1121 01222333 456666544 33 44566654 699999975 88864 24889999999999998864
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=208.71 Aligned_cols=281 Identities=19% Similarity=0.149 Sum_probs=191.0
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH 171 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 171 (435)
....++++.+++++ +. ++.+ ++.+|++++..+ +.+++.+||+|++++|.|..+...++..|++++.++
T Consensus 46 ~~~~~l~~~la~~~-~~------~~~i---v~~sg~~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~ 113 (349)
T cd06454 46 DLHEELEEELAEFH-GK------EAAL---VFSSGYAANDGV--LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFK 113 (349)
T ss_pred hHHHHHHHHHHHHh-CC------CCEE---EeccHHHHHHHH--HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEec
Confidence 33467888888876 32 2233 467778887766 566778999999999999998888888999887764
Q ss_pred ecCCCCCCcChHhHHHHhhcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 172 YYDPDSKSLDFAALMDDIKNA--PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
. +|.+++++.+.+. +.+++++++++++||||...+ +++|+++|++||+++|+|++|........ ..
T Consensus 114 ~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~-~~- 181 (349)
T cd06454 114 H-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPH-GR- 181 (349)
T ss_pred C-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCC-CC-
Confidence 2 4778888888743 246789999999999998765 67899999999999999999864322211 01
Q ss_pred HHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc--ccCCChhHHHHHHHHhCChh
Q 013839 250 QAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM--YGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 250 ~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~ 326 (435)
..... .+..+.+++++|+||.++.+| ||++. +++ +.+.+....... ....+...+.++.+.+....
T Consensus 182 -~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 250 (349)
T cd06454 182 -GVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAG---SKE----LIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQ 250 (349)
T ss_pred -ChhhhccccccCcEEEeechhhhcccC---CEEEC---CHH----HHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHh
Confidence 11111 123356899999999998655 88863 777 666555433221 12355555555555654321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec-C---CCHHHH-HHHhhhccEEEeCC-----
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS-G---LTPYQV-DRLAKEFHIYMTQD----- 396 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~-~---~~~~~~-~~ll~~~gI~i~pg----- 396 (435)
+ .+..+++++++++.+.+.|.+++. ....+.++++.+. . .+.+.+ +.+ .++||.+.++
T Consensus 251 ------~-~~~~~~~~~~~~~~l~~~l~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~~~~~~~ 318 (349)
T cd06454 251 ------G-GPERRERLQENVRYLRRGLKELGF----PVGGSPSHIIPPLIGDDPAKAVAFSDAL-LERGIYVQAIRYPTV 318 (349)
T ss_pred ------c-CHHHHHHHHHHHHHHHHHHHhcCC----cccCCCCCcEEEEeCCChHHHHHHHHHH-HhCCceEEEecCCcc
Confidence 2 356678899999999999988763 3444444444333 1 223444 555 4569999752
Q ss_pred ----C--cEEecc-CCCCcHHHHHHHHHHH
Q 013839 397 ----G--RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 397 ----g--Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+ |++++. .+++++++++++|+++
T Consensus 319 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 319 PRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 2 898854 3889999999998764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-24 Score=207.16 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=168.6
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhC
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDA 163 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~ 163 (435)
|+. .....|++.++++. +. ++++ ++.||++|+.++ +.+++++||+|++++|+|+.+...+ ...
T Consensus 80 ~~~-Pt~~~Le~~lA~le-g~-------~~~i--v~~sG~~Ai~~~--l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~ 146 (427)
T PRK07049 80 FNH-PNSEIVEDRLAVYE-GA-------ESAA--LFSSGMSAIATT--LLAFVRPGDVILHSQPLYGGTETLLAKTFRNF 146 (427)
T ss_pred CCC-cCHHHHHHHHHHHh-CC-------CcEE--EEccHHHHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHhc
Confidence 443 34578999999987 32 1444 689999998877 7888999999999999999997654 467
Q ss_pred CCCeeeeeecCCCCCCcChHhHHHHhhcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh---cCceeeeeccCC
Q 013839 164 QIPERTYHYYDPDSKSLDFAALMDDIKNA--PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV---KGHFPFFDMAYQ 238 (435)
Q Consensus 164 g~~~~~v~~~~~~~~~~d~e~l~~~i~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~---~~~~vi~Deay~ 238 (435)
|++++.++. +.|++.+++.+.+. .++++++++++|+||||.+++.+++.+|++.|+. +++++|+|++|.
T Consensus 147 Gi~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 147 GVGAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred CcEEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 887666642 24677887777532 2468999999999999999999999888888654 689999999986
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHH
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL 317 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~ 317 (435)
...... ++ . ....+++.|+||.++ .+|+|+||+++ +++ +++.+.+.......+.+.+.+++
T Consensus 221 ~~~~~~------pl----~-~g~divv~S~SK~~gG~~glr~G~vv~---~~~----l~~~l~~~~~~~g~~ls~~~a~l 282 (427)
T PRK07049 221 GPVFQK------PL----E-HGADLSVYSLTKYVGGHSDLVAGAVLG---RKA----LIRQVRALRSAIGTQLDPHSCWM 282 (427)
T ss_pred ccccCC------cc----c-cCCCEEEEcCceeecCCCCcEEEEEEC---CHH----HHHHHHHHHHhcCCCCCHHHHHH
Confidence 543211 11 1 134788999999998 69999999963 777 77777776665566788888888
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+...|+. +....++..++++.+.+.|++++
T Consensus 283 ~~r~L~t----------l~~R~~~~~~~a~~la~~L~~~p 312 (427)
T PRK07049 283 LGRSLET----------LVLRMERANRNARAVAEFLRDHP 312 (427)
T ss_pred HHcCCCh----------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 7777743 33445566888888889998774
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=206.37 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=216.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...++|+...|.+....|.+.+.+.+++.....+. ...+.......+|.+.+++++ +.. .++ ++
T Consensus 51 ~~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~-g~~-------~~~--~~ 120 (407)
T PRK07179 51 TPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT-GFE-------SCL--LC 120 (407)
T ss_pred CCCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh-CCC-------cEE--EE
Confidence 35678899999998777655555555555544432111 111222234578888999887 331 344 79
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
++|++|+.++ +.+++.+||.|++..+.+......++..|++++.++. .|++++++.+++ .++++|++++
T Consensus 121 ~sG~~An~~~--l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~lV~v~~ 189 (407)
T PRK07179 121 QSGWAANVGL--LQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIER--HGPGIIVVDS 189 (407)
T ss_pred CCHHHHHHHH--HHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHh--cCCeEEEECC
Confidence 9999999887 6777789999999998888777777778877665432 488999999873 2468899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC-CeEEEEecccccccccCCcccEE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE-HLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
++||||.+.+ +++|.++|++||+++|+||+|.....+. .....+..+ +.. ..++++.|+||.+| .|+||+
T Consensus 190 v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~--~g~g~~~~~-~~~~~vdi~~~S~sK~~g---~~~G~l 260 (407)
T PRK07179 190 VYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGP--QGAGLVAEL-GLTSRVHFITASLAKAFA---GRAGII 260 (407)
T ss_pred CCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCC--CCCchHHhc-CCCCCCCEEEeechHhhh---ccCeEE
Confidence 9999999988 5589999999999999999986433321 111112222 221 23588999999986 368999
Q ss_pred EEEecChhHHHHHHHHHHHHhhc-cccCC-ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 283 SILCVDSKQAAAIRSQIQQIARA-MYGSP-PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
++ +++ +++.+...... .+.+. +.....++.++++.. +.....+++++++++++.+.|+++|.
T Consensus 261 ~~---~~~----~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~-------~~~~~~~~~l~~~~~~l~~~L~~~g~-- 324 (407)
T PRK07179 261 TC---PRE----LAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI-------ESADDRRARLHANARFLREGLSELGY-- 324 (407)
T ss_pred Ee---CHH----HHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 64 777 66666543322 22222 222222232333211 22345678899999999999998863
Q ss_pred CccccccCcceeEecCC----CHHHHHHHhhhccEEE----eCC-----C--cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 361 NWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYM----TQD-----G--RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 361 ~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i----~pg-----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+. ..+ .++++.+ +.+.+.+.|+++||.+ .|+ + ||+++. .+++++++++++|++++++.
T Consensus 325 --~v~-~~~-~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 325 --NIR-SES-QIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred --CCC-CCC-CEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 333 333 3444433 2345555567789973 332 1 999854 48899999999999988754
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=207.28 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=162.2
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-----hCCCC
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-----DAQIP 166 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~ 166 (435)
.-..+|.+.++++.... ... +++||++|+.++ +.+++++||+|+++.|.|+.+...+. ..|++
T Consensus 76 Pt~~~LE~~lA~l~g~~--------~~l--~~~sG~~Ai~~a--l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~ 143 (418)
T PLN02242 76 PTVLNLGRQMAALEGTE--------AAY--CTASGMSAISSV--LLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNIT 143 (418)
T ss_pred hhHHHHHHHHHHHhCCC--------eEE--EEccHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCce
Confidence 34678888888887332 333 799999999888 77788999999999999988876552 46766
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
++.++. .|+++++++++ + ++++|++++|+||||.+. ++++|+++|++|++++|+|++|..+.+..
T Consensus 144 ~~~~d~-------~d~e~l~~~i~---~~~tklV~lesp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~~- 209 (418)
T PLN02242 144 TTFVDI-------TDLEAVKKAVV---PGKTKVLYFESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLSP- 209 (418)
T ss_pred EEEcCC-------CCHHHHHHhcC---cCCCEEEEEecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCCH-
Confidence 665543 27899999887 4 589999999999999887 56799999999999999999997665431
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhh--ccccCCChhHHHHHHHHh
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIAR--AMYGSPPVHGILLVATIL 322 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~q~~~~~~l 322 (435)
. .+ ..++++.|+||.++.+|+++ ||+++ +++ +++.+++... ....+++...|.+...++
T Consensus 210 ------~-~~----g~divv~S~SK~l~g~g~~~gG~iv~---~~~----li~~l~~~~~~~~~~~g~~~~~~~A~l~~~ 271 (418)
T PLN02242 210 ------A-RL----GADVVVHSISKFISGGADIIAGAVCG---PAE----LVNSMMDLHHGALMLLGPTMNPKVAFELSE 271 (418)
T ss_pred ------H-Hc----CCcEEEEeCccccCCCCCceEEEEEc---CHH----HHHHHHHHhhhhhhccCCCCCHHHHHHHHc
Confidence 1 11 35689999999999899885 78753 777 7776766543 234456666677776666
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
... .+....+++.++++.+.+.|++++
T Consensus 272 ~l~--------tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 272 RLP--------HLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred CCC--------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 532 334466788999999999999875
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=207.27 Aligned_cols=289 Identities=15% Similarity=0.118 Sum_probs=200.1
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCChhh----HHHHhhCCCC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RFHPESHIYFPDPTWSNH----HNIWRDAQIP 166 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~ 166 (435)
+..++|+.+++++. ... ++++. ++.|+++++.+++..+. .+.+||+|+++++.|+.. ....+..|++
T Consensus 63 ~~~~~r~~ia~~~~-~~~----~~~v~--~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 63 AYEAVREKVAKFIN-AAS----DEEIV--FTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHHHhC-cCC----CCeEE--EeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcE
Confidence 46689999999883 321 35777 89999999888742221 357899999999987653 3455678999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. ++++.+|++++++.+. ++++++++++++||||..++ +++|.++|++||+++|+|++|...... .
T Consensus 136 ~~~v~~--~~~~~~~~~~l~~~i~---~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~-~- 205 (403)
T TIGR01979 136 LKFIPL--DDDGTLDLDDLEKLLT---EKTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMP-V- 205 (403)
T ss_pred EEEEec--CCCCCCCHHHHHHHhc---cCCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCccc-c-
Confidence 999987 2456799999999997 67899999999999999987 558999999999999999997533211 1
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------hc
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------RA 305 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~~ 305 (435)
.+ ...+.++++.|++|.+|++| +|++.+ +++ +++.+.... +.
T Consensus 206 ----~~----~~~~~d~~~~s~~K~~gp~G--~g~l~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 268 (403)
T TIGR01979 206 ----DV----QALDCDFYVFSGHKMYGPTG--IGVLYG---KEE----LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKF 268 (403)
T ss_pred ----Cc----cccCCCEEEEecccccCCCC--ceEEEE---chH----HHhcCCCeecCCCceeecccCccccCCChhhc
Confidence 11 11245688999999998666 788864 666 554432110 00
Q ss_pred cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC-----cceeEec--CCC
Q 013839 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ-----LGMFCFS--GLT 378 (435)
Q Consensus 306 ~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~g~~~~~--~~~ 378 (435)
...+++.....++..+++... ....+..+++..+.++.+.+.|+.++. +.+..+. ++++.+. +.+
T Consensus 269 ~~gt~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~l~~~l~~~l~~~~g---~~~~~~~~~~~~~~~v~~~~~~~~ 340 (403)
T TIGR01979 269 EAGTPNIAGVIGLGAAIDYLE-----AIGLENIEAHEHELTAYALERLGEIPG---LRIYGPRDAEDRGGIISFNVEGVH 340 (403)
T ss_pred CCCCccHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCccccCceEEEEeCCcC
Confidence 112344444455555553211 012456778888888899998887642 4444332 4554443 455
Q ss_pred HHHHHHHhhhccEEEeCC--------------C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 379 PYQVDRLAKEFHIYMTQD--------------G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg--------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
...+.+.|+++||.+.+| + |||++.. +++|+++++++|+++++.+
T Consensus 341 ~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 341 PHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 556666678899999753 2 9998632 7789999999999887654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=206.80 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=200.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHH--HHhCCCCEEEEcCCCChh----hHHHHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ--RRFHPESHIYFPDPTWSN----HHNIWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~--~~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~ 167 (435)
..++|+++++++.... +++|. +|.|+++++.+++..+ ..+.+||+|+++++.|++ +...++..|+++
T Consensus 69 ~~~~r~~la~~~~~~~-----~~~v~--~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v 141 (406)
T PRK09295 69 MENVRKQAALFINARS-----AEELV--FVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAEL 141 (406)
T ss_pred HHHHHHHHHHHcCcCC-----CCeEE--EeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEE
Confidence 5688999999884322 46788 8999999998884222 246799999999987754 344556789999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. +.++.+|+++|++++. ++++++++++|+||||..++. ++|.++|+++|+++++|++|...... .
T Consensus 142 ~~v~~--~~~~~~d~~~l~~~i~---~~t~lv~l~~~~n~tG~~~~~---~~i~~~~~~~~~~vivD~a~~~g~~~-~-- 210 (406)
T PRK09295 142 RVIPL--NPDGTLQLETLPALFD---ERTRLLAITHVSNVLGTENPL---AEMIALAHQHGAKVLVDGAQAVMHHP-V-- 210 (406)
T ss_pred EEEec--CCCCCCCHHHHHHhcC---CCcEEEEEecchhcccccCCH---HHHHHHHHHcCCEEEEEcccccCccc-c--
Confidence 99987 3456789999999987 678999999999999999874 58899999999999999997543221 1
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH----------------------hhc
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI----------------------ARA 305 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----------------------~~~ 305 (435)
++ ...+.++++.|++|.+|.+| +||+++ +++ +++.+... .+.
T Consensus 211 ---~~----~~~~~D~~~~s~~K~~gp~G--~G~l~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~ 274 (406)
T PRK09295 211 ---DV----QALDCDFYVFSGHKLYGPTG--IGILYV---KEA----LLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRF 274 (406)
T ss_pred ---Cc----hhcCCCEEEeehhhccCCCC--cEEEEE---chH----hHhhCCCcccCCceeeeeecCCccccCCchhhc
Confidence 11 11234688899999988666 799874 666 44433211 011
Q ss_pred cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEec--CCCHHH
Q 013839 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFS--GLTPYQ 381 (435)
Q Consensus 306 ~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~--~~~~~~ 381 (435)
...+++..+..++..+++.-. +...+..+++.++.++++.+.|++++. +....+ ..+++.|. +.+.+.
T Consensus 275 e~GT~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~iv~~~~~~~~~~~ 346 (406)
T PRK09295 275 EAGTPNTGGIIGLGAALDYVS-----ALGLNNIAEYEQNLMHYALSQLESVPD---LTLYGPQNRLGVIAFNLGKHHAYD 346 (406)
T ss_pred CCCCccHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCCceEEEEEECCcCHHH
Confidence 223455556666666664221 123566777888888899999887642 334333 24544443 455566
Q ss_pred HHHHhhhccEEEeCC--------------C--cEEeccC-CCCcHHHHHHHHHHHHH
Q 013839 382 VDRLAKEFHIYMTQD--------------G--RISMAGV-TTGNVNYLANAIHEVTR 421 (435)
Q Consensus 382 ~~~ll~~~gI~i~pg--------------g--Ris~~~~-~~e~i~~~~~~l~~~l~ 421 (435)
+...|+++||.++.| | |+|+... +++|+++++++|+++..
T Consensus 347 ~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 347 VGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 655678899999754 2 9997543 77999999999988643
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=207.69 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=199.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhh---HHHHhhCCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNH---HNIWRDAQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~---~~~~~~~g~~ 166 (435)
..++|+.+++++... +++|. +++|+++++..+ +.+++ .+||+|++..+.|+.+ ...++..|++
T Consensus 45 ~~~~r~~la~~~g~~------~~~i~--~~~g~t~a~~~~--~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~ 114 (381)
T PRK02948 45 LQVCRKTFAEMIGGE------EQGIY--FTSGGTESNYLA--IQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYT 114 (381)
T ss_pred HHHHHHHHHHHhCCC------CCeEE--EeCcHHHHHHHH--HHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCE
Confidence 457788888887322 56787 899999998877 44333 5789999988655544 4456678999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.+++ ++++.+|+++|++.+. ++++++++++|+||||.+++. ++|.++|+++|+++++|++ +.++..+.
T Consensus 115 v~~v~~--~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~~~---~~I~~l~~~~~~~vivD~~-~~~g~~~~- 184 (381)
T PRK02948 115 VTEIPV--DKSGLIRLVDLERAIT---PDTVLASIQHANSEIGTIQPI---AEIGALLKKYNVLFHSDCV-QTFGKLPI- 184 (381)
T ss_pred EEEEee--CCCCCCCHHHHHHhcC---CCCEEEEEECCcCCcEeehhH---HHHHHHHHHcCCEEEEECh-hhcccccc-
Confidence 999987 3456799999999987 578899999999999999875 5899999999999999965 45543221
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH-HHHHHH----HhhccccCCChhHHHHHHHH
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI-RSQIQQ----IARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~-~~~l~~----~~~~~~~~~~~~~q~~~~~~ 321 (435)
.+ ...+.++++.|++|.+|.+| +|++++ +++ + ...+.. .......+++.+++.++..+
T Consensus 185 ----~~----~~~~~d~~~~s~~K~~gp~G--~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 247 (381)
T PRK02948 185 ----DV----FEMGIDSLSVSAHKIYGPKG--VGAVYI---NPQ----VRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTA 247 (381)
T ss_pred ----Cc----ccCCCCEEEecHHhcCCCCc--EEEEEE---cCC----CCCCCcccCCCCCCCcCCCCccHHHHHHHHHH
Confidence 11 12245788899999999888 688864 444 2 111110 00113456777888888778
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cC---cce--eEecCCCHHHHHHHhhhccEEEeC
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQ---LGM--FCFSGLTPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~---~g~--~~~~~~~~~~~~~ll~~~gI~i~p 395 (435)
+... .+..++.+++++++++++.+.|++++.. +.... +. ..+ |...+++.+.+...|+++||.+++
T Consensus 248 l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~--v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~ 319 (381)
T PRK02948 248 AENI------LKNMQEESLRFKELRSYFLEQIQTLPLP--IEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAIST 319 (381)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEc
Confidence 7542 1456777899999999999999988642 11111 10 111 111244555554445778999973
Q ss_pred C-------------------------C--cEEeccC-CCCcHHHHHHHHHHHHHhhhhh
Q 013839 396 D-------------------------G--RISMAGV-TTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 396 g-------------------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
| + |+|++.. +++|++++++.|+++++++...
T Consensus 320 g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 378 (381)
T PRK02948 320 GSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYRG 378 (381)
T ss_pred hHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2 9998633 7899999999999998776643
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=200.64 Aligned_cols=317 Identities=17% Similarity=0.108 Sum_probs=208.9
Q ss_pred CCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC
Q 013839 65 GRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144 (435)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd 144 (435)
|+..+.+.+++++..-.......|. .-..++|+.+++.+..... .+.+. ++.+|+.++..+ +.+++.+||
T Consensus 12 gP~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~----~~~i~--~~~~gt~~l~~~--~~~l~~~~~ 81 (368)
T PRK13479 12 GPLTTSRTVREAMLRDWGSWDDDFN--ALTASVRAKLVAIATGEEG----YTCVP--LQGSGTFSVEAA--IGSLVPRDG 81 (368)
T ss_pred CCCCCCHHHHHHhCCCCCCCChHHH--HHHHHHHHHHHHHhCCCCC----ceEEE--EcCCcHHHHHHH--HHhccCCCC
Confidence 3345555655544332211111122 3467888889998743211 12355 789999999998 777778999
Q ss_pred EEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 145 HIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 145 ~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
+|++++++|.+. ...++..|++++.++. .+++.+|++++++.+++. ++++++++++|+||||...+. ++|.+
T Consensus 82 ~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~~---~~i~~ 155 (368)
T PRK13479 82 KVLVPDNGAYGARIAQIAEYLGIAHVVLDT--GEDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILNPL---DEIAA 155 (368)
T ss_pred eEEEEeCCchHHHHHHHHHHcCCcEEEEEC--CCCCCCCHHHHHHHHHhC-CCCcEEEEEcccCccccccCH---HHHHH
Confidence 999998887665 3677889999999987 344679999999998743 356788899999999999875 58889
Q ss_pred HHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 223 QFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 223 ~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
+|+++++++|+|++ +.++..+ .++. . .+..+++.|++|.+ |++| +||+++ +++ +++.+..
T Consensus 156 l~~~~~~~livDa~-~~~g~~~-----~~~~---~-~~~d~~v~s~~K~l~g~~G--~G~l~~---~~~----~~~~~~~ 216 (368)
T PRK13479 156 VAKRHGKRLIVDAM-SSFGAIP-----IDIA---E-LGIDALISSANKCIEGVPG--FGFVIA---RRS----ELEACKG 216 (368)
T ss_pred HHHHcCCEEEEEcc-cccCCcc-----cccc---c-cCceEEEecCccccccCCC--ceEEEE---CHH----HHHHhhc
Confidence 99999999999955 5554221 1111 1 12346778999965 6677 599974 777 5554443
Q ss_pred Hhh-----------------ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 302 IAR-----------------AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 302 ~~~-----------------~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
... ...++++...+.++..++..-. + ...+++..++++++++.+++.|+++|. ..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~--~--~~~~~~~~~~~~~~~~~l~~~L~~~g~----~~ 288 (368)
T PRK13479 217 NSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE--E--EGGVPARGARYANNQRTLVAGMRALGF----EP 288 (368)
T ss_pred CCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH--H--hhCHHHHHHHHHHHHHHHHHHHHHcCC----cc
Confidence 211 1112455555555555554211 0 023566778899999999999998874 22
Q ss_pred ccc-----CcceeEec-C---CCHHHHHHHhhhccEEEeCCC-------cEEe-ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 365 ITN-----QLGMFCFS-G---LTPYQVDRLAKEFHIYMTQDG-------RISM-AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 365 ~~~-----~~g~~~~~-~---~~~~~~~~ll~~~gI~i~pgg-------Ris~-~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
..+ .+...++. . .+.+.+.+.|.++||.+.+|. |++. +..+.+++++++++|+++++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 289 LLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred cCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 211 11223332 1 344555444567899998862 9984 54588999999999999987653
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=200.87 Aligned_cols=312 Identities=16% Similarity=0.135 Sum_probs=207.9
Q ss_pred CCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCC
Q 013839 64 KGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143 (435)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g 143 (435)
+|+..+++.+++++..........|. .-...+|+.+++++.... . ...+. ++.||++++..+ +..++.+|
T Consensus 5 p~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~~-~---~~~i~--~~~~gt~~l~~~--~~~~~~~~ 74 (355)
T TIGR03301 5 PGPLSTSATVRDAMLVDWCHWDSEFN--DVTDQVRDRLLALAGGDD-N---HTCVL--LQGSGTFAVEAT--IGSLVPRD 74 (355)
T ss_pred CCCCCCCHHHHHHhhhhccCCCHHHH--HHHHHHHHHHHHHhcCCC-C---CcEEE--EeCCcHHHHHHH--HHhccCCC
Confidence 34455667777666552221112243 335688999999873321 1 12344 789999999888 77777888
Q ss_pred CEEEEcCCC-Chh-hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 144 SHIYFPDPT-WSN-HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 144 d~Vlv~~p~-y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
|+|++.++. |+. +...++..|.+++.++. ++++.+|++++++.+.++ ++.+++++++++||||...+ +++|+
T Consensus 75 ~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~---~~~i~ 148 (355)
T TIGR03301 75 GKLLVLINGAYGERLAKICEYLGIPHTDLNF--SEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILNP---LEAIA 148 (355)
T ss_pred CeEEEECCCchhhHHHHHHHHcCCceEEEec--CCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchhH---HHHHH
Confidence 887766654 443 45667889999999987 345689999999998754 35678888899999999875 57999
Q ss_pred HHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHH
Q 013839 222 YQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQ 300 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~ 300 (435)
++|++|++++|+|+++. +...+ .++. ..+..++++|++|.+ |++| +||+++ +++ +++.+.
T Consensus 149 ~l~~~~~~~livD~~~s-~g~~~-----~~~~----~~~~d~~~~s~~K~l~~~~G--~g~~~~---~~~----~~~~~~ 209 (355)
T TIGR03301 149 KVARSHGAVLIVDAMSS-FGAIP-----IDIE----ELDVDALIASANKCLEGVPG--FGFVIA---RRD----LLEASA 209 (355)
T ss_pred HHHHHcCCEEEEEeccc-cCCcc-----cchh----hcCccEEEecCCcccccCCc--eeEEEE---CHH----HHHHhh
Confidence 99999999999998643 32111 1221 124568899999986 5556 699975 777 555444
Q ss_pred HHh-----------------hccccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 301 QIA-----------------RAMYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 301 ~~~-----------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
... .....+++...+.++..++..-. ++ +.++.+++++++++++.+.|+++|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~~~~~~~~~~L~~~g~---- 280 (355)
T TIGR03301 210 GNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELE-----AEGGVPARIARYRRNRELLVDGLRALGF---- 280 (355)
T ss_pred CCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHHHHHHHHcCC----
Confidence 110 11223566666666666664221 12 2567778889999999999988763
Q ss_pred ccccc---CcceeEecCC------CHHHHHHHhhhccEEEeCCC-------cEEe-ccCCCCcHHHHHHHHHHH
Q 013839 363 EHITN---QLGMFCFSGL------TPYQVDRLAKEFHIYMTQDG-------RISM-AGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 363 ~~~~~---~~g~~~~~~~------~~~~~~~ll~~~gI~i~pgg-------Ris~-~~~~~e~i~~~~~~l~~~ 419 (435)
....+ .+++++|+.+ +.+.+.+.++++||.+.+++ ||++ ...+.++++++++.|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 281 QPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred eeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 22222 3454555533 33455555577899999873 9986 444789999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=204.22 Aligned_cols=330 Identities=13% Similarity=0.090 Sum_probs=209.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++...|||..|.-...-|. ..+.+++++.+++..... .......-..++.+.+++.. + .+.+. ++++
T Consensus 37 ~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~--~~~s 105 (403)
T PRK05093 37 QQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT-F-------AERVF--FANS 105 (403)
T ss_pred CCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC-C-------CCEEE--EeCc
Confidence 35678999987721111222 333444444444432111 11101111224555555443 1 13566 8999
Q ss_pred chhHHHHHHHHHHHhC-----C-CCEEEEcCCCChhhHHHH-hhCC------------CCeeeeeecCCCCCCcChHhHH
Q 013839 126 GTGACRLFAEFQRRFH-----P-ESHIYFPDPTWSNHHNIW-RDAQ------------IPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~-~~~g------------~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
|++|+..+..+..... + .++|+..+-+|.+..... ...| .+++.++. .|++.++
T Consensus 106 GseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~ 178 (403)
T PRK05093 106 GAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVK 178 (403)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHH
Confidence 9999999865443331 2 367888888887654322 1111 11122211 2789999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDP--TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
+.+. +++++|+++ |.||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.+. ..+...+ +....
T Consensus 179 ~~l~---~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd--- 247 (403)
T PRK05093 179 AVID---DHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD---LFAYMHY-GVTPD--- 247 (403)
T ss_pred HHhc---CCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc---chhhhhc-CCCCC---
Confidence 8886 567788776 788887665 889999999999999999999999998877641 2222112 11111
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+.||||.++ +|+|+||+++ +++ +++.+.......+.+.+++.|.++.++|+.. . ....++++++
T Consensus 248 i~s~sK~l~-~G~rig~vv~---~~~----i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~-------~-~~~~~~~~~~ 311 (403)
T PRK05093 248 ILTSAKALG-GGFPIGAMLT---TAE----IASHFKVGTHGSTYGGNPLACAVAEAVFDII-------N-TPEVLEGVKA 311 (403)
T ss_pred EEEeccccc-CCcceEEEEE---cHH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-------h-hccHHHHHHH
Confidence 568999999 9999999975 777 7777765444455678888898888876421 1 1244577888
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC-------CHHHHHHHhhhccEEEeCCC----cEEeccC-CCCcHHHH
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------TPYQVDRLAKEFHIYMTQDG----RISMAGV-TTGNVNYL 412 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pgg----Ris~~~~-~~e~i~~~ 412 (435)
+++.+.+.|++++....+....+..|++.|+.+ +.+++..++ ++||.+.++| ||+++.. ++++++++
T Consensus 312 ~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~-~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~ 390 (403)
T PRK05093 312 RRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAA-EEGVMVLVAGPDVLRFAPSLVIEEADIDEG 390 (403)
T ss_pred HHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHH-HCCeEEecCCCCEEEEeCCCCCCHHHHHHH
Confidence 889999999876421112223345678888754 123456665 5799999865 8865443 88999999
Q ss_pred HHHHHHHHHh
Q 013839 413 ANAIHEVTRS 422 (435)
Q Consensus 413 ~~~l~~~l~~ 422 (435)
+++|++++.+
T Consensus 391 ~~~l~~~l~~ 400 (403)
T PRK05093 391 LARFEKAVAK 400 (403)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=203.24 Aligned_cols=339 Identities=16% Similarity=0.074 Sum_probs=219.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...+|+..|.....-| ..++++++++.+++.... ..+.+..+..+|+++|++++... +++. +++||
T Consensus 45 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~-~~~~~~~~~~~lae~l~~~~~~~-------~~v~--~~~sG 113 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILG-HAHPRVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPSV-------EMVR--FVNSG 113 (423)
T ss_pred CCCCEEEEccccccccccC-CCCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCcc-------cEEE--EeCCH
Confidence 4678899999887412112 334455555566665432 22335667899999999987332 3677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh---CCCCeeeeeecC-------CCCC---CcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD---AQIPERTYHYYD-------PDSK---SLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~-------~~~~---~~d~e~l~~~i~~~~ 193 (435)
++|++.+..+.......++|+...++|.++...+.. .+......+..+ .... ..|++++++.+.+.+
T Consensus 114 seA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 193 (423)
T TIGR00713 114 TEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYG 193 (423)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcC
Confidence 999999865544445569999999999987543332 111111111100 0000 127899999887544
Q ss_pred CCcEEEEe-CCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 194 DSSFFLLH-PSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 194 ~~~~~v~~-~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
++++++++ +.++| +|.+.+ ++.+++|.++|++||+++|+||+|.++.++.. .....+ +...+ +.+|||.
T Consensus 194 ~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~----~~~~~~-~~~pD---i~t~sK~ 264 (423)
T TIGR00713 194 EEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG----GAQEYF-GVEPD---LTTLGKI 264 (423)
T ss_pred CcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc----hhHHHh-CCCcc---hhhhhhh
Confidence 45666666 58888 788887 68899999999999999999999988865321 111112 22122 3379999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHH---hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQI---ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
++ +|+|+||+++ +++ +++.+... ....+.+.+.+++.++.+.|+... + .+..+..++..+..++.
T Consensus 265 l~-~G~pig~v~~---~~~----i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~--~--~~~~~~~~~~~~~~~~~ 332 (423)
T TIGR00713 265 IG-GGLPVGAFGG---RRE----IMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLD--E--EGVYTELDELAKRLAEG 332 (423)
T ss_pred hc-CCCceeeeeE---HHH----HHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHh--c--ccHHHHHHHHHHHHHHH
Confidence 99 9999999974 777 77776531 223456788888888877775321 0 02345556666667777
Q ss_pred HHHHHHhhCCCCCccccccCcceeEe-cCC------------CH----HHHHHHhhhccEEEeCCC----cEEeccCCCC
Q 013839 349 LRQNLEKLGSSLNWEHITNQLGMFCF-SGL------------TP----YQVDRLAKEFHIYMTQDG----RISMAGVTTG 407 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~~~~g~~~~-~~~------------~~----~~~~~ll~~~gI~i~pgg----Ris~~~~~~e 407 (435)
+.+.+++++.+ . .....++++.+ +.. +. .+...++ ++||.+.+++ |+++. .+++
T Consensus 333 l~~~~~~~~~~--~-~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~l~~~-~t~~ 407 (423)
T TIGR00713 333 LSEVLEDTGIP--H-TVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPSQFEACFLSAA-HTEE 407 (423)
T ss_pred HHHHHHhcCCC--e-EEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecCCccceeeECC-CCHH
Confidence 77777776642 1 12334554442 321 11 1334554 5899998754 88876 4899
Q ss_pred cHHHHHHHHHHHHHh
Q 013839 408 NVNYLANAIHEVTRS 422 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~ 422 (435)
++++++++|.+++++
T Consensus 408 ~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 408 DIENTIEAAEEVFAE 422 (423)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998864
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=206.52 Aligned_cols=338 Identities=13% Similarity=0.066 Sum_probs=210.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCccc----HHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVS----TKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
++.+.|||..|.....-|. .++.+++++.+++... ..|....+. .++.+.+++++ +. ..+++. ++
T Consensus 34 dG~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~-~~-----~~~~v~--~~ 102 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGH-NHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALT-PE-----GLDKVF--FV 102 (413)
T ss_pred CCCEEEEcCccHHhhccCC-CCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhC-CC-----CCCEEE--Ec
Confidence 5678999998742121221 3344555555555322 223332223 34555555544 21 145777 89
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C------------CCeeeeeecCC----CCCCcChHhHH
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q------------IPERTYHYYDP----DSKSLDFAALM 186 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~----~~~~~d~e~l~ 186 (435)
+||++|+..+..++....++++|++.+++|.+........ + .+++.+|..+. .++..|++.|+
T Consensus 103 ~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 182 (413)
T cd00610 103 NSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALE 182 (413)
T ss_pred CcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHH
Confidence 9999999998544433567899999999998865433322 1 23444544210 12455899999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
+.+.+++.+++++++...+|++|..+ +.+.+++|.++|++||+++|+||+|.+++..+ ........ +.... +
T Consensus 183 ~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g---~~~~~~~~-~~~~d---~ 255 (413)
T cd00610 183 EALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG---KMFAFEHF-GVEPD---I 255 (413)
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhhHhhc-CCCCC---e
Confidence 99885434667777777778889876 67779999999999999999999998775432 11122111 21112 4
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHH--HHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI--QQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
.|+||.++ .|+|+||+++ +++ +++.+ .......+.+.+.+++.++.++|+.-. + ....++++
T Consensus 256 ~t~sK~l~-~g~~~g~~~~---~~~----~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~------~--~~~~~~~~ 319 (413)
T cd00610 256 VTLGKGLG-GGLPLGAVLG---REE----IMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLE------E--EGLLENAA 319 (413)
T ss_pred EEEccccc-CccccEEEEE---cHH----HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence 58899999 4899999964 777 77765 232233455677777777777664211 1 34556677
Q ss_pred HHHHHHHHHHHhhCCC-CCccccccCcceeEecCC------------CHHHHHHHhhhccEEEeCCC----cEEecc-CC
Q 013839 344 RKRTTLRQNLEKLGSS-LNWEHITNQLGMFCFSGL------------TPYQVDRLAKEFHIYMTQDG----RISMAG-VT 405 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~------------~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~ 405 (435)
++.+.+.+.|+.+... .......+ .|.+.++.+ ....+...+.++||.+.|++ |++++. .+
T Consensus 320 ~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t 398 (413)
T cd00610 320 ELGEYLRERLRELAEKHPLVGDVRG-RGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIIT 398 (413)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEeec-CceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCC
Confidence 7777777777665321 00111223 345555533 12334334456899999973 887654 37
Q ss_pred CCcHHHHHHHHHHHH
Q 013839 406 TGNVNYLANAIHEVT 420 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l 420 (435)
++++++++++|++++
T Consensus 399 ~~~i~~~~~~l~~~l 413 (413)
T cd00610 399 EEEIDEGLDALDEAL 413 (413)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-23 Score=200.72 Aligned_cols=326 Identities=17% Similarity=0.075 Sum_probs=209.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCC---CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEF---LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.+.++|+.++|+.. ...+.+++++.+++.. +.. ..|.......+|.+.+++++ +. + ..+ ++
T Consensus 45 ~~~~~~~sn~ylgl---~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~-g~------~-~~l--~~ 111 (402)
T TIGR01821 45 KDVTVWCSNDYLGM---GQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH-GK------E-SAL--VF 111 (402)
T ss_pred eeEEEeEccCcCCC---CCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh-CC------C-eEE--EE
Confidence 67899999998444 4444455544444431 111 11233334578888898887 32 1 223 57
Q ss_pred CCchhHHHHHHHHHHHhC--CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEE
Q 013839 124 LSGTGACRLFAEFQRRFH--PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLL 200 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~ 200 (435)
.+|++|+..+ +..+.. +|+.|+.....+......+...|+++..++. .|++++++.++... +++++++
T Consensus 112 ~sG~~an~~a--i~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~ 182 (402)
T TIGR01821 112 TSGYVANDAT--LATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIA 182 (402)
T ss_pred CchHHHHHHH--HHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 7888887777 333333 6777776655555555556667776554432 26777887776432 3578999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-CCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-EHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++|+||||.+.+ +++|.++|++|++++|+||+|....+++... ......+. .+.+++++||||.+|++|
T Consensus 183 ~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~---g~~~~~~~~~~~div~~t~sKa~g~~G--- 253 (402)
T TIGR01821 183 FESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGG---GIAERDGLMHRIDIIEGTLAKAFGVVG--- 253 (402)
T ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCC---ccchhccCCCCCeEEEEechhhhccCC---
Confidence 9999999999887 6689999999999999999987333322111 11111121 234688899999999888
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
||+++ +++ +++.+...... .+.+.+...+.++.++|+.. +.....++++.++++++.+.|+++|
T Consensus 254 G~i~~---~~~----~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g 319 (402)
T TIGR01821 254 GYIAA---SRK----LIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL-------KESQDLRRAHQENVKRLKNLLEALG 319 (402)
T ss_pred ceeec---CHH----HHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh-------hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 89853 777 77777654432 22345666666666666432 1124455667788889999999887
Q ss_pred CCCCccccccCcceeEe-cCC--C-HHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 358 SSLNWEHITNQLGMFCF-SGL--T-PYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~-~~~--~-~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
. ++..+.++++.+ ++. . .+....+++++||.+.+. | ||++.. .+++++++++++|+++++
T Consensus 320 ~----~~~~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 320 I----PVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred C----CcCCCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4 455555554332 222 1 234455656679999752 2 888642 388999999999999987
Q ss_pred hhh
Q 013839 422 SEQ 424 (435)
Q Consensus 422 ~~~ 424 (435)
+..
T Consensus 396 ~~~ 398 (402)
T TIGR01821 396 RLG 398 (402)
T ss_pred HcC
Confidence 654
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=197.76 Aligned_cols=284 Identities=14% Similarity=0.081 Sum_probs=191.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERTYH 171 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~ 171 (435)
..++++.+++++. ... ++.++ ++.+|++|+.++ +.+++.+||+|+++.++|.. +...++..|++++.++
T Consensus 34 ~~~~~~~la~~~g-~~~----~~~~~--~~~~~t~al~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 104 (356)
T cd06451 34 MDEILEGLRYVFQ-TEN----GLTFL--LSGSGTGAMEAA--LSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVE 104 (356)
T ss_pred HHHHHHHHHHHhc-CCC----CCEEE--EecCcHHHHHHH--HHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEee
Confidence 4578888888873 321 23455 788889998888 66778899999999987765 4567788999999998
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
.. +++.+|++++++.++. .+++++++++|+||||...+ +++|.++|+++|+++++|+++. ++... .+
T Consensus 105 ~~--~~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~-~g~~~-----~~ 171 (356)
T cd06451 105 KP--WGEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS-LGGEP-----FR 171 (356)
T ss_pred cC--CCCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh-ccCcc-----cc
Confidence 72 3468999999999972 26789999999999999887 4578889999999999999854 22111 11
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH---Hhh----------------ccccCCCh
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ---IAR----------------AMYGSPPV 312 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~---~~~----------------~~~~~~~~ 312 (435)
.. .. +..+++.|.+|.++.+ .++||+++ +++ +++.+.. ... ....+++.
T Consensus 172 ~~---~~-~~d~~~~s~~K~l~~p-~g~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 239 (356)
T cd06451 172 MD---EW-GVDVAYTGSQKALGAP-PGLGPIAF---SER----ALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPV 239 (356)
T ss_pred cc---cc-CccEEEecCchhccCC-CCcceeEE---CHH----HHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChH
Confidence 11 11 2346677899999854 46899974 777 5544432 000 11122333
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEecC----CCHHHHHHH
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFSG----LTPYQVDRL 385 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~~----~~~~~~~~l 385 (435)
..+.++.+++..-. ....+...++.+++++++.+.|...+. ....+ ..+.+.|+. .+.+.+.+.
T Consensus 240 ~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T cd06451 240 NLLYALREALDLIL-----EEGLENRWARHRRLAKALREGLEALGL----KLLAKPELRSPTVTAVLVPEGVDGDEVVRR 310 (356)
T ss_pred HHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcCC----eeccCcccCCCceEEEECCCCCCHHHHHHH
Confidence 33444545553211 134566778888888999999988764 22221 234444443 344445434
Q ss_pred hhhc-cEEEeCC------C--cEEeccC-CCCcHHHHHHHHHHHH
Q 013839 386 AKEF-HIYMTQD------G--RISMAGV-TTGNVNYLANAIHEVT 420 (435)
Q Consensus 386 l~~~-gI~i~pg------g--Ris~~~~-~~e~i~~~~~~l~~~l 420 (435)
|.++ ||.+.+| + |++++.. +++++++++++|++++
T Consensus 311 L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 311 LMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred HHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4555 9999875 1 9998543 7899999999998876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=200.33 Aligned_cols=281 Identities=12% Similarity=0.071 Sum_probs=187.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY 173 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 173 (435)
..++++.+++++ +. +++. +++|+++++.++ +.+++.+||+|+++.++|......++..|++++.++..
T Consensus 46 ~~~l~~~la~~~-g~-------~~i~--~~~g~t~al~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 113 (361)
T cd06452 46 IKDFHHDLAEFL-GM-------DEAR--VTPGAREGKFAV--MHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNT 113 (361)
T ss_pred HHHHHHHHHHHc-CC-------ceEE--EeCCHHHHHHHH--HHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecC
Confidence 468899999987 33 2666 899999998888 67778899999999998877767788999999999873
Q ss_pred CCCCCCcChHhHHHHhhcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 174 DPDSKSLDFAALMDDIKNAP----DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~~----~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
...++.+|++++++++.+.. ++++++++++|+||||.. .++++|.++|+++++++|+|++|...... .
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~---~~~~~i~~~~~~~~~~vivD~a~~~g~~~-~---- 185 (361)
T cd06452 114 GHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNL---HDAKKIAKVCHEYGVPLLLNGAYTVGRMP-V---- 185 (361)
T ss_pred CCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeee---ccHHHHHHHHHHcCCeEEEECCcccCCcC-C----
Confidence 22246899999999886321 367899999999999976 45679999999999999999998642211 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc--------ccCCChhHHHHHHHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM--------YGSPPVHGILLVATI 321 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~q~~~~~~ 321 (435)
+... .+..++++|+||.++ ++.|+||+++ +++ +++.+.+..... ..+.....+.++.+.
T Consensus 186 -~~~~----~~~d~~~~s~~K~l~-~~~~~G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 252 (361)
T cd06452 186 -SGKE----LGADFIVGSGHKSMA-ASAPIGVLAT---TEE----WADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMAS 252 (361)
T ss_pred -CHHH----cCCCEEEecCCcccc-CCCCeEEEEE---CHH----HHHHHhccccccccceeeeeccccCchHHHHHHHH
Confidence 1111 135789999999998 5569999974 777 666665543211 011111122223233
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcccc---ccCcceeEecCC------------C-HHHHHH
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHI---TNQLGMFCFSGL------------T-PYQVDR 384 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~---~~~~g~~~~~~~------------~-~~~~~~ 384 (435)
+.. +.+.++...+ ..++++++.+.|+++ | +.+. ..... |..+.. + .++.+.
T Consensus 253 l~~------~~~~~~~~~~-~~~~~~~l~~~L~~l~g----~~v~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (361)
T cd06452 253 FPH------VKERVKRWDE-EVEKARWFVAELEKIEG----IKQLGEKPKNHD-LMFFETPSFDEIAKKHKRRGYFLYSE 320 (361)
T ss_pred HHH------HHHHHHHHHH-HHHHHHHHHHHHhcCCC----eEEECCCCCCCc-eEEEEcCCcchhhhhccccchhHHHH
Confidence 321 1122333222 233457888899887 4 3333 12222 222211 1 134455
Q ss_pred HhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHH
Q 013839 385 LAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 385 ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
| +++||.+...| |++..+.++++++.++++|+++.
T Consensus 321 L-~~~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 321 L-KKRGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred H-HHcCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 5 56799976543 78874448899999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=199.44 Aligned_cols=336 Identities=13% Similarity=0.079 Sum_probs=215.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...+|+..|.....-|. .++++++++.+++... .. . ......++++.+++++..... .+.+. ++++|
T Consensus 26 ~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~-~~-~-~~~~~~~~~~~la~~l~~~~~----~~~~~--~~~sG 95 (377)
T PRK02936 26 NNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDI-WH-V-SNLFTNSLQEEVASLLAENSA----GDLVF--FCNSG 95 (377)
T ss_pred CCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhc-cc-c-ccccCCHHHHHHHHHHHhcCC----CCEEE--EeCCc
Confidence 35678999988862111232 3344555555555432 11 1 123456788999999854321 13566 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-HHhhCCCCee---eeeecCCCCC--CcChHhHHHHhhcCCCCcEEEE
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-IWRDAQIPER---TYHYYDPDSK--SLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~---~v~~~~~~~~--~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
++|+..+..+.......++|++.+++|.+... .+...+.... ..+..++..+ -.|++.+++.+. +++++++
T Consensus 96 ~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~ii 172 (377)
T PRK02936 96 AEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN---EEVAAVM 172 (377)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhcc---CCeEEEE
Confidence 99999985433323334779999999875432 2222221110 1111000000 127889998886 5688999
Q ss_pred eCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+..+++++|.. .+++.+++|.++|++|++++|+||+|.++.+.+ .......+ +.... +.++||.++ +|+|+
T Consensus 173 ~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~d---i~t~sK~l~-~G~~i 244 (377)
T PRK02936 173 LEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQF-GLDPD---IVTVAKGLG-NGIPV 244 (377)
T ss_pred EecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhh-CCCCc---EEEEccccc-CCCcc
Confidence 99999999987 488999999999999999999999998887653 12222222 22222 237999999 99999
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--C
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL--G 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 357 (435)
||+++ +++ +.+.+.......+.+.+.++|.++.++|+... .+...++++++.+.+++.|++. +
T Consensus 245 g~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~~~~~ 309 (377)
T PRK02936 245 GAMIG---KKE----LGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIK--------QPSFLEEVQEKGEYFLQKLQEELEH 309 (377)
T ss_pred EEEEE---cHH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 99964 777 77777654444556788999999988885421 1233455666666666666653 1
Q ss_pred CCCCccccccCcceeEecCCC--HHHHHHHhhhccEEEeCCC----cEEe-ccCCCCcHHHHHHHHHHHH
Q 013839 358 SSLNWEHITNQLGMFCFSGLT--PYQVDRLAKEFHIYMTQDG----RISM-AGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~~~~~--~~~~~~ll~~~gI~i~pgg----Ris~-~~~~~e~i~~~~~~l~~~l 420 (435)
.+ .+.... ..|+++|+.+. .+.+...+.++||.+.|+| ||++ ...+++++++++++|++++
T Consensus 310 ~~-~~~~v~-~~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 310 LE-CVKNIR-GKGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred CC-cEEeEe-ecceEEEEEecchHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 11 112222 35678888763 3445555677999999875 8885 3348999999999998753
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=201.41 Aligned_cols=289 Identities=12% Similarity=0.084 Sum_probs=196.7
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCChh----hHHHHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RFHPESHIYFPDPTWSN----HHNIWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~ 167 (435)
..++|+.+++++.... +++|+ ++.|+++++.+++..+. .+.+||+|+++++.|+. +...++..|+++
T Consensus 78 ~~~~r~~la~~~~~~~-----~~~v~--~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v 150 (424)
T PLN02855 78 YELARKKVAAFINAST-----SREIV--FTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVL 150 (424)
T ss_pred HHHHHHHHHHHcCCCC-----CCEEE--EeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEE
Confidence 4689999999884321 35788 99999999988843221 46799999999997764 344556789999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++.. . ++.+|++++++.+. ++++++++++++||||..++.+ +|.++|+++|+++++|++|.. ...+.
T Consensus 151 ~~v~~~-~-~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~a~~~-g~~~~-- 219 (424)
T PLN02855 151 KFVGLT-P-DEVLDVEQLKELLS---EKTKLVATHHVSNVLGSILPVE---DIVHWAHAVGAKVLVDACQSV-PHMPV-- 219 (424)
T ss_pred EEEecC-C-CCCcCHHHHHHHhc---cCceEEEEeCccccccccCCHH---HHHHHHHHcCCEEEEEhhhhc-CCcCC--
Confidence 999872 3 34699999999997 6789999999999999999854 888999999999999999732 11111
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------hcc
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------RAM 306 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~ 306 (435)
++ ...+.++++.|++|.+|.+| +||+++ +++ +++.+.... +..
T Consensus 220 ---~~----~~~~~d~~~~s~~K~~gp~G--~G~l~~---~~~----~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e 283 (424)
T PLN02855 220 ---DV----QTLGADFLVASSHKMCGPTG--IGFLWG---KSD----LLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE 283 (424)
T ss_pred ---Cc----hhcCCCEEEeecccccCCCc--cEEEEE---chh----hhhcCCCEecCCCceeeeecCccccCCChhhcc
Confidence 11 11234577999999888666 799975 666 544443210 011
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-------CcceeEec--CC
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-------QLGMFCFS--GL 377 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------~~g~~~~~--~~ 377 (435)
..+++.....++..+++.- .+...++.+++..+.++.+.+.|++++. +....+ ..+++.+. +.
T Consensus 284 ~GT~~~~~~~~l~~al~~~-----~~~g~~~i~~~~~~l~~~l~~~L~~~~g---~~i~~~~~~~~~~r~~~v~~~~~~~ 355 (424)
T PLN02855 284 AGTPAIGEAIGLGAAIDYL-----SEIGMDRIHEYEVELGTYLYEKLSSVPG---VRIYGPKPSEGVGRAALCAFNVEGI 355 (424)
T ss_pred CCChHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCcccccCcccEEEEEECCc
Confidence 1223333344444444321 1134667778888888899998877631 333322 22333332 45
Q ss_pred CHHHHHHHhhhc-cEEEeCC--------------C--cEEeccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 378 TPYQVDRLAKEF-HIYMTQD--------------G--RISMAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 378 ~~~~~~~ll~~~-gI~i~pg--------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+.+.+.|.++ ||.++.| + |+|+... +++|++++++.|+++++.+.
T Consensus 356 ~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 356 HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 666665455555 9998853 1 9997532 78999999999999887654
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=197.35 Aligned_cols=328 Identities=16% Similarity=0.090 Sum_probs=208.2
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CC-----CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SE-----FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
+.+.++|+.++|... ...+.+++.+.+++.. +. ...|.+.....+|++.+++++ +. ++.+ +
T Consensus 45 ~~~~~~~~s~dylgl---~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~-g~------~~~~---~ 111 (407)
T PRK09064 45 EREVTVWCSNDYLGM---GQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH-GK------EAAL---V 111 (407)
T ss_pred CceEEEEECCCCcCC---CCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh-CC------CcEE---E
Confidence 467899999988443 4444454444444431 10 112334455678889999887 32 2233 4
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEEe
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLLH 201 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~~ 201 (435)
+.+|++|+..+..++....+++.|+.....+......+...|+++..++. .|++++++.++... +++++|++
T Consensus 112 ~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~ 184 (407)
T PRK09064 112 FTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAF 184 (407)
T ss_pred ECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEE
Confidence 67777776666322222237776666655555555556667776654432 37788888776432 46789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-CCeEEEEecccccccccCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-EHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G~RvG 280 (435)
++++||+|...+ +++|.++|++||+++|+||+|....+++... .+....+. .+.+++++||||.+|++| |
T Consensus 185 ~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~---g~~~~~~~~~~~div~~t~sKa~g~~G---G 255 (407)
T PRK09064 185 ESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGG---GIAERDGLMDRIDIIEGTLAKAFGVMG---G 255 (407)
T ss_pred eCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCC---ChHHhcCCCCCCeEEEEecchhhhccC---c
Confidence 999999998876 6689999999999999999986322221111 11122222 234788999999999888 9
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhcc--ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAM--YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|+++ +++ +++.+.+..... ..+.+...+.++.+.++.- +.....+++++++++++.+.|+++|.
T Consensus 256 ~~~~---~~~----~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~ 321 (407)
T PRK09064 256 YIAG---SAA----LVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL-------KESNEERERHQERAAKLKAALDAAGI 321 (407)
T ss_pred eEec---CHH----HHHHHHHhCccccccCcCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9853 777 777776654322 2344555555555555321 11234467888899999999998863
Q ss_pred CCCccccccCcceeEec--CC--CH-HHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFS--GL--TP-YQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~--~~--~~-~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
++.++.++ ++++ +. .. +....+++++||.+.+. | ||++.. .+++++++++++|+++++
T Consensus 322 ----~~~~~~~~-iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 322 ----PVMPNESH-IVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred ----CCCCCCCC-EEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 45545554 3333 22 22 34455666679999752 2 888742 388999999999999887
Q ss_pred hhh
Q 013839 422 SEQ 424 (435)
Q Consensus 422 ~~~ 424 (435)
+..
T Consensus 397 ~~~ 399 (407)
T PRK09064 397 RLG 399 (407)
T ss_pred HcC
Confidence 643
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=202.41 Aligned_cols=317 Identities=12% Similarity=0.092 Sum_probs=202.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC-----CcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS-----ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
..+++|+.|+| +. +. ++.+.++..+. .. ...|.+ ..|.+++++++++++....+. +.+++. ++.
T Consensus 20 ~~~~~l~~g~~-~~---~~-p~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~--~~~ 88 (398)
T cd00613 20 QSMSFLGSGTY-KH---NP-PAVIKRNILEN-EF-YTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANAS--LQD 88 (398)
T ss_pred cCccccccccc-CC---cC-cHHHHHHhccc-cC-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--Ccccee--ccC
Confidence 45699999996 33 33 33444444443 22 334665 789999999999988433221 133555 566
Q ss_pred Cch-hHHHHHHHHHHHhCC--CCEEEEcCCCChhhHHHHhhCC----CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 125 SGT-GACRLFAEFQRRFHP--ESHIYFPDPTWSNHHNIWRDAQ----IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 125 gg~-~a~~~~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~~~g----~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+|+ ++...+ +...+.+ ||+|++++|.|+.+...+...| ++++.++. ++++.+|++++++++. ++++
T Consensus 89 ~g~~~~~~~~--~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~---~~t~ 161 (398)
T cd00613 89 EATAAAEAAG--LAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS--DEGGTVDLEALKEEVS---EEVA 161 (398)
T ss_pred chHHHHHHHH--HHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc--CCCCCcCHHHHHHhcC---CCeE
Confidence 554 443333 3334555 9999999999999988887777 88888887 3345789999999987 6789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc--
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY-- 275 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~-- 275 (435)
++++++|+ |||.+. +.+++|.++|++||+++|+|+++...... . .. +..+.++++.|++|.+ +|
T Consensus 162 ~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~-~--~~-------~~~~~d~~~~s~~K~~-~p~g 227 (398)
T cd00613 162 ALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGL-K--PP-------GEYGADIVVGNLQKTG-VPHG 227 (398)
T ss_pred EEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCC-C--Ch-------HHcCCCEEEeeccccC-CCCC
Confidence 99998885 899883 44689999999999999999985432211 1 10 1124679999999998 55
Q ss_pred --CCcccEEEEEecChhHHHHHHHHHHHH-----------------------------h-hccccCCChhHHHHHHHHhC
Q 013839 276 --GHRVGCLSILCVDSKQAAAIRSQIQQI-----------------------------A-RAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 276 --G~RvG~~~~~~~~~~~~~~~~~~l~~~-----------------------------~-~~~~~~~~~~~q~~~~~~l~ 323 (435)
|+|+||+.+ +++ +++.+... . ...+.+.+...+.+...+..
T Consensus 228 ~Ggp~~g~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~ 300 (398)
T cd00613 228 GGGPGAGFFAV---KKE----LVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVY 300 (398)
T ss_pred CCCCceeEEEE---hhh----hHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHH
Confidence 799999964 666 54432100 0 01111222333333333332
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCccee--EecCC------CHHHHHHHhhhccEEEeC
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMF--CFSGL------TPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~--~~~~~------~~~~~~~ll~~~gI~i~p 395 (435)
.. .+..++.+++++++++++.+.|++++.. . .+.+.++ +++.+ +.+.+.+.|.++||.+..
T Consensus 301 ~~------~~g~~~~~~~~~~~~~~l~~~L~~~~~~---~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~ 369 (398)
T cd00613 301 LG------PEGLKEIAERAHLNANYLAKRLKEVGGV---L--PFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPT 369 (398)
T ss_pred hC------HHHHHHHHHHHHHHHHHHHHHHHhcCCc---c--cCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccc
Confidence 22 1456778899999999999999988641 1 1222222 23322 223343334568988765
Q ss_pred ----C-C--cEEecc-CCCCcHHHHHHHH
Q 013839 396 ----D-G--RISMAG-VTTGNVNYLANAI 416 (435)
Q Consensus 396 ----g-g--Ris~~~-~~~e~i~~~~~~l 416 (435)
+ + |+++.. .++++++++++.|
T Consensus 370 ~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 370 MYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 2 2 888643 3789999888764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=199.14 Aligned_cols=292 Identities=16% Similarity=0.123 Sum_probs=188.8
Q ss_pred CCCCCcc----cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHH-HHHHHhCCCCEEEEcCCCChhhH----
Q 013839 87 ESISASV----STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFA-EFQRRFHPESHIYFPDPTWSNHH---- 157 (435)
Q Consensus 87 ~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~-~~~~~~~~gd~Vlv~~p~y~~~~---- 157 (435)
.|....+ ..++|+.+++++ +.. ++++. ++.|+++++.++. .+...+++||+|++++|.|....
T Consensus 51 ~~~~~~~~~~~~~~l~~~ia~~~-~~~-----~~~v~--~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~ 122 (397)
T TIGR01976 51 AYESSRRADQVVDDAREAVADLL-NAD-----PPEVV--FGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWL 122 (397)
T ss_pred CchHHHHHHHHHHHHHHHHHHHc-CCC-----CCeEE--EeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHH
Confidence 3554444 458888888887 332 33576 8899999887764 22234689999999999886543
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY 237 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay 237 (435)
..++..|++++.++. +++++.+|++++++.+. ++++++++++|+||||...+ +++|+++|++||+++|+|+++
T Consensus 123 ~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~ 195 (397)
T TIGR01976 123 QAAERAGAKVKWARV-DEATGELHPDDLASLLS---PRTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVH 195 (397)
T ss_pred HHHHhcCCEEEEEec-cccCCCcCHHHHHHhcC---CCceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhh
Confidence 445678999999987 34457899999999997 67899999999999999875 668999999999999999995
Q ss_pred CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc----------c
Q 013839 238 QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM----------Y 307 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~----------~ 307 (435)
.. .... ..+ .+ .+..+++.|++|.+| +|+|++++ +++ +++.+....... .
T Consensus 196 ~~-~~~~-----~~~---~~-~~~d~~~~s~~K~~g---~~~G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~ 255 (397)
T TIGR01976 196 YA-PHGL-----IDV---QA-TGADFLTCSAYKFFG---PHMGILWG---RPE----LLMNLPPYKLTFSYDTGPERFEL 255 (397)
T ss_pred hc-cccC-----CCH---HH-cCCCEEEEechhhcC---CceEEEEE---cHH----HHhhCCCccccCccCCCcchhcC
Confidence 32 1111 011 11 134566789999975 56899864 777 655554322110 1
Q ss_pred cCCChhHHHHHHH---HhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-----CcceeE
Q 013839 308 GSPPVHGILLVAT---ILSDPN------LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-----QLGMFC 373 (435)
Q Consensus 308 ~~~~~~~q~~~~~---~l~~~~------l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~g~~~ 373 (435)
.+++.....++.. .+.+.+ ..+......++.+++..+.++++.+.|++++. +.+..+ .++++.
T Consensus 256 gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~ 332 (397)
T TIGR01976 256 GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPG---VTLYGVARLAARVPTVS 332 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCccCCCceEE
Confidence 1222222222222 222111 01111123567778888888899999887752 334332 344333
Q ss_pred ec--CCCHHHHHHHhhhccEEEeCC-----------------C--cEEeccC-CCCcHHHHHHHH
Q 013839 374 FS--GLTPYQVDRLAKEFHIYMTQD-----------------G--RISMAGV-TTGNVNYLANAI 416 (435)
Q Consensus 374 ~~--~~~~~~~~~ll~~~gI~i~pg-----------------g--Ris~~~~-~~e~i~~~~~~l 416 (435)
+. +.+.+.+.+.|+++||.+..+ + |+|+... +++++++++++|
T Consensus 333 ~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 333 FTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred EEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 22 344555544457789999754 2 9987433 678888888764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=197.02 Aligned_cols=295 Identities=12% Similarity=0.084 Sum_probs=202.8
Q ss_pred cccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCC
Q 013839 92 SVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIP 166 (435)
Q Consensus 92 ~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~ 166 (435)
.+..++++.+.+.+ ++... .+.++ ++.+|++++..+ +..++.+||+|++.+++|... ...++..|++
T Consensus 38 ~~~~~~~~~~~~~l~~~~g~~~----~~~vi--~~~~gt~a~~~a--~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~ 109 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFKTKS----GTPFI--FPTTGTGAWESA--LTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFD 109 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC----CCEEE--EeCCcHHHHHHH--HHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCc
Confidence 34566666666554 23321 12344 788889998877 666789999999999888655 4667788999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
++.++. +.+..+|++++++.+++.. ++++++++++++||||..++.+++.++++ |+++|+++|+|+++. +...+.
T Consensus 110 v~~v~~--~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s-~g~~~i 185 (401)
T PLN02409 110 VDVVES--PWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSS-IGALDF 185 (401)
T ss_pred eEEEEC--CCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccc-cCCccc
Confidence 999987 3334689999999998421 26899999999999999999776666655 999999999999964 221111
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh---------------c--c-c
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR---------------A--M-Y 307 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~---------------~--~-~ 307 (435)
.+ +..+.++++.|.+|.++.| .++||+++ +++ .++.+..... . . .
T Consensus 186 -----d~----~~~~~D~~~~s~~K~l~~P-~G~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 248 (401)
T PLN02409 186 -----RM----DEWGVDVALTGSQKALSLP-TGLGIVCA---SPK----ALEASKTAKSPRVFFDWADYLKFYKLGTYWP 248 (401)
T ss_pred -----cc----cccCccEEEEcCccccCcC-CCcceeEE---CHH----HHHHHhcCCCCCeecCHHHHHHHHhcCCCCC
Confidence 11 1123457777789998644 36899975 777 5444432110 0 0 2
Q ss_pred cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----cceeEec----CCCH
Q 013839 308 GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----LGMFCFS----GLTP 379 (435)
Q Consensus 308 ~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~----~~~~ 379 (435)
.+++...+.++..+++.-. +...++.+++++++++++++.|+.+|. ....+. .+...++ +.+.
T Consensus 249 ~Tp~~~~~~al~~al~~~~-----~~G~e~i~~~~~~l~~~l~~~L~~~g~----~~~~~~~~~~s~~v~~~~~p~~~~~ 319 (401)
T PLN02409 249 YTPSIQLLYGLRAALDLIF-----EEGLENVIARHARLGEATRLAVEAWGL----KLCTKKPEWRSDTVTAVVVPEGIDS 319 (401)
T ss_pred CCccHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcCC----eeccCChhhcccceEEEeCCCCCCH
Confidence 3556666667766665321 245788889999999999999988864 332221 2222233 4455
Q ss_pred HHH-HHHhhhccEEEeCC-----C---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 380 YQV-DRLAKEFHIYMTQD-----G---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 380 ~~~-~~ll~~~gI~i~pg-----g---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+ ..+++++||.+.+| | ||+.. ..+.+++..++++|.+++.+++
T Consensus 320 ~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 320 AEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred HHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 444 67778899999976 2 99853 3478899999999999988755
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=194.68 Aligned_cols=333 Identities=10% Similarity=0.027 Sum_probs=204.3
Q ss_pred eeeecceecCCCCCcccchHHHHHHHHhc---CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 53 INLGVGAYRDDKGRPVVLQCVREAEAKIA---GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 53 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+||+..+|......+...+...+++++.. .+....|+...++.+|++.+++++... +.+ ++++|..+
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e-------~al---~~~sG~~a 70 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTE-------SAI---LYSDGAST 70 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCC-------cEE---EecCcHHH
Confidence 46677776444333333333333333322 112233777778999999999998432 233 46677666
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC--------CCCcEEEEe
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA--------PDSSFFLLH 201 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~--------~~~~~~v~~ 201 (435)
...+ +.+++++||+|+++++.|..+...+...+++++.++..+. -+++.+.+.+... .+++++|++
T Consensus 71 ~~~~--i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~ 144 (392)
T PLN03227 71 TSST--VAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVV 144 (392)
T ss_pred HHHH--HHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence 6665 6778899999999999999988877777777766654211 1344444444311 136789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh--hhcCCeEEEEecccccccccCCcc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF--LEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
.++.||+|.+.+ +++|.++|++||+++|+||+|. +...+. ...+....+ ....+.++++.|+||.+| ++.
T Consensus 145 E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~-~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~g 216 (392)
T PLN03227 145 EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGK-SGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVG 216 (392)
T ss_pred cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCC-CCCcHHHHcCCCCCCCceEEEeechhhhh---ccC
Confidence 999999999988 5689999999999999999986 432211 001122211 112345888999999876 444
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccCC--ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGSP--PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
|++++ +++ +++.++.......++. +++.+.++..++... ...+..+++++++.+++++.|++.+
T Consensus 217 g~v~~---~~~----~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~-------~~~~~~~~~l~~~~~~l~~~L~~~~ 282 (392)
T PLN03227 217 GMTVG---SEE----VVDHQRLSGSGYCFSASAPPFLAKADATATAGE-------LAGPQLLNRLHDSIANLYSTLTNSS 282 (392)
T ss_pred cEEec---CHH----HHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 88853 777 7766654333222332 344555555454321 1124567788888899999987654
Q ss_pred CCCCccc------cccCcceeEecCCCH-------------HHHHHHhhhccEEEeCC-------------C--cEEec-
Q 013839 358 SSLNWEH------ITNQLGMFCFSGLTP-------------YQVDRLAKEFHIYMTQD-------------G--RISMA- 402 (435)
Q Consensus 358 ~~~~~~~------~~~~~g~~~~~~~~~-------------~~~~~ll~~~gI~i~pg-------------g--Ris~~- 402 (435)
.+...++ .....+..+.+.+.. ..+.+.+.++||.+.+. . |+++.
T Consensus 283 ~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~ 362 (392)
T PLN03227 283 HPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANA 362 (392)
T ss_pred CccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecC
Confidence 3210000 011112233332211 13433445689988531 1 77764
Q ss_pred cCCCCcHHHHHHHHHHHHHhh
Q 013839 403 GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 403 ~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..++|+++++++.|++++++.
T Consensus 363 ~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 363 SHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 348999999999999998764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=193.77 Aligned_cols=287 Identities=15% Similarity=0.083 Sum_probs=196.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYH 171 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~ 171 (435)
..++|+.+++++.... . ++.|. +|.||++++..+ +.+++.+||.+++..+++.+. ...++..|.+++.++
T Consensus 37 ~~~~r~~la~l~~~~~-~---~~~i~--~t~~~t~al~~~--~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~ 108 (363)
T TIGR02326 37 VEQIRQQLLALATAEE-G---YTSVL--LQGSGTFAVEAV--IGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHHhCCCC-C---ceEEE--EcCCCHHHHHHH--HHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 4567888888773321 0 12566 899999999988 667778888888777666544 356788899999998
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. ++++.+|++++++.+.+. ++++++++++++||||..++. ++|.++|++||+++|+|+++ .++..+ .+
T Consensus 109 ~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~i---~~I~~l~~~~g~~livD~~~-~~g~~~-----~~ 176 (363)
T TIGR02326 109 T--GEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILNPI---EAVAKLAHRHGKVTIVDAMS-SFGGIP-----ID 176 (363)
T ss_pred C--CCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccCcH---HHHHHHHHHcCCEEEEEccc-cccCcc-----cc
Confidence 7 345689999999998754 345678888999999999874 59999999999999999874 333211 12
Q ss_pred HHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHH------------------hhccccCCCh
Q 013839 252 IRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQI------------------ARAMYGSPPV 312 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~ 312 (435)
+.. .+..++++|++|.+ |.+| +||+++ +++ .++.+... .....+.++.
T Consensus 177 ~~~----~~~D~~~~s~~K~l~~p~G--~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~ 243 (363)
T TIGR02326 177 IAE----LHIDYLISSANKCIQGVPG--FGFVIA---RQA----ELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPT 243 (363)
T ss_pred hhh----cCccEEEecCccccccCCc--ceEEEE---CHH----HHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcH
Confidence 221 13458889999987 5556 699974 776 33332210 0011235667
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEec---C---CCHHHHH
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFS---G---LTPYQVD 383 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~---~---~~~~~~~ 383 (435)
..+.++.+++..-. +. ...++.+++++++++++++.|+++|. ....+ ..+...|+ . .+...+.
T Consensus 244 ~~~~al~~al~~l~--~~--g~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 315 (363)
T TIGR02326 244 HVVHAFAQALLELE--KE--GGVAARHQRYQQNQKTLVAGMRALGF----EPLLDDEIQSPIITSFYSPEDPDYRFADFY 315 (363)
T ss_pred HHHHHHHHHHHHHH--Hh--hCHHHHHHHHHHHHHHHHHHHHHcCC----eeccCcccCCceEEEEECCCCCCCCHHHHH
Confidence 77777666664321 00 12566778999999999999988874 22221 23333333 2 3444554
Q ss_pred HHhhhccEEEeCCC-------cEEe-ccCCCCcHHHHHHHHHHHHH
Q 013839 384 RLAKEFHIYMTQDG-------RISM-AGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 384 ~ll~~~gI~i~pgg-------Ris~-~~~~~e~i~~~~~~l~~~l~ 421 (435)
+.|+++||.+.+|. ||++ +..+.+++++++++|++++.
T Consensus 316 ~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 316 QRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 55577899999883 9985 54588999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=193.51 Aligned_cols=215 Identities=13% Similarity=0.099 Sum_probs=156.3
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCC
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQI 165 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 165 (435)
+..+..+|+++++++..+. +.+ ++++|++|+.++ +.+++.+||+|+++.|.|..+... ++..|+
T Consensus 62 ~~p~~~~Le~~iA~~~g~~--------~~l--~~~sG~~Ai~~a--l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 129 (400)
T PRK06234 62 GNPTSTEVENKLALLEGGE--------AAV--VAASGMGAISSS--LWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV 129 (400)
T ss_pred CCccHHHHHHHHHHHhCCC--------cEE--EEcCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence 6678899999999998432 333 699999998777 777889999999999988765543 466888
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASG 243 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~ 243 (435)
+++.++. .|+++++++++ ++++++++++|+||||.+.+ +++|.++|+++ ++++|+|++|....+.
T Consensus 130 ~v~~vd~-------~d~e~l~~~i~---~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~ 196 (400)
T PRK06234 130 EVTFVDT-------SNLEEVRNALK---ANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ 196 (400)
T ss_pred EEEEECC-------CCHHHHHHHhc---cCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence 8888764 27899999987 67899999999999999876 66888999997 9999999998765432
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHh-h-ccccCCChhHHHHHHH
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIA-R-AMYGSPPVHGILLVAT 320 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~q~~~~~ 320 (435)
. ++ + .+.++++.|+||.++.+|+|+ ||+++ +++ +++.++... . ......+......+..
T Consensus 197 ~------~l----~-~g~Divv~S~sK~l~g~g~~~gG~v~~---~~~----~~~~l~~~~~~~~~g~~l~p~~a~l~~~ 258 (400)
T PRK06234 197 R------PL----Q-LGADVVVHSATKYLNGHGDVIAGFVVG---KEE----FINQVKLFGIKDMTGSVIGPFEAFLIIR 258 (400)
T ss_pred C------ch----h-hCCcEEEeeccccccCCCCceeEEEEe---cHH----HHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 1 11 1 134689999999999899886 88853 777 666665432 1 2234455554444444
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.|+. +....++..++...+.+.|+..+
T Consensus 259 ~l~t----------l~~r~~~~~~na~~~a~~L~~~~ 285 (400)
T PRK06234 259 GMKT----------LQIRMEKHCKNAMKVAKFLESHP 285 (400)
T ss_pred ccCc----------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 4432 33444555567777777777654
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=199.31 Aligned_cols=293 Identities=13% Similarity=0.114 Sum_probs=199.3
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-----hCC-CCEEEEcCCCChhhHH---HHhh
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-----FHP-ESHIYFPDPTWSNHHN---IWRD 162 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-----~~~-gd~Vlv~~p~y~~~~~---~~~~ 162 (435)
.+.+.++++++++....... ++++|+ +|+|+++++.++. .++ ..+ +|+|++..+.|+.+.. .++.
T Consensus 39 ~~~~~l~~a~~~~~~~~~~~--~~~~i~--~t~g~teal~~~~--~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~ 112 (382)
T TIGR03403 39 ATHPAIAEALDKLYKGINAR--DLDDII--ITSCATESNNWVL--KGVYFDEILKGGKNHIITTEVEHPAVRATCAFLES 112 (382)
T ss_pred HHHHHHHHHHHHHHHHcCcC--CCCeEE--EeCCHHHHHHHHH--HHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHH
Confidence 45678888888887433221 267888 9999999999883 332 245 4789998866655543 4567
Q ss_pred CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 163 AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 163 ~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.|++++.+++ ++++.+|++++++++. ++++++++++|+||||..++.+ +|.++|+++|+++++|+++. +..
T Consensus 113 ~G~~v~~v~~--~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~~~~---~I~~la~~~g~~~ivD~a~~-~g~ 183 (382)
T TIGR03403 113 LGVEVTYLPI--NEQGTITAEQVREAIT---EKTALVSVMWANNETGMIFPIK---EIGEICKERGVLFHTDAVQA-IGK 183 (382)
T ss_pred CCCEEEEEec--CCCCCCCHHHHHHhcc---cCCeEEEEEcccCCCccccCHH---HHHHHHHHcCCEEEEechhh-cCC
Confidence 8999999987 2446889999999987 6789999999999999999854 88899999999999999954 221
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHH---HHHhhccccCCChhHHHHHH
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI---QQIARAMYGSPPVHGILLVA 319 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~q~~~~ 319 (435)
.+. +. ....-.+++.|++|.+|.+| +|++.+ .+.. .+...+ .........+++...+.++.
T Consensus 184 ~~~-----~~----~~~~~D~~~~s~~K~~gp~G--~g~l~v---r~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~ 247 (382)
T TIGR03403 184 IPV-----DV----QKAGVDFLSFSAHKFHGPKG--VGGLYI---RKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMG 247 (382)
T ss_pred Ccc-----Cc----cccCCCEEEEcchhhCCCCc--eEEEEE---CCCC--CCCCcccCCCCCCCcccCCcChHHHHHHH
Confidence 111 11 11123588899999988778 477753 2220 011111 00011123456777777777
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----cc--eeEecCCCHHHHHHHhhhccEEE
Q 013839 320 TILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----LG--MFCFSGLTPYQVDRLAKEFHIYM 393 (435)
Q Consensus 320 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~~ll~~~gI~i 393 (435)
.++... .+.++..++++++.++++.+.|++++. +.+..+. .+ .|.+.+.+.+.+...|.++||.+
T Consensus 248 ~al~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v 318 (382)
T TIGR03403 248 EAMRLA------NEYLDFEKSHVRRLRDRLEDALLELPD---VFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAA 318 (382)
T ss_pred HHHHHH------HHhHHHHHHHHHHHHHHHHHHHhcCCC---EEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEE
Confidence 777432 244667778899999999999987642 4444332 12 23333556666644467889999
Q ss_pred eCC-------------------------C--cEEeccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 394 TQD-------------------------G--RISMAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 394 ~pg-------------------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.| + |+|+... +++|+++++++|+++++++.
T Consensus 319 ~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 319 STGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred EchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 842 2 9997543 78999999999999887755
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=191.07 Aligned_cols=332 Identities=18% Similarity=0.117 Sum_probs=208.3
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC---CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL---ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+.+.++|+.+.|+....++.+.+.+.+.+.....+... .+....-..+|.+.+++++. . + ..+ ++++
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g-~------~-~~~--~~~S 113 (406)
T PRK13393 44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG-K------E-AAL--LFTS 113 (406)
T ss_pred CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC-C------C-cEE--EeCC
Confidence 36799999999855533343344444433333221111 11112234677888888773 2 1 333 5777
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p 204 (435)
|++|+..+...+....+||.|++....|......+...|.+++.++. .|++++++.+... ++++++++++++
T Consensus 114 G~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~v 186 (406)
T PRK13393 114 GYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFESV 186 (406)
T ss_pred cHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcCC
Confidence 77887777332222227787777776776666667777877666543 2667777776543 235789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-CCeEEEEecccccccccCCcccEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-EHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+||+|.+.+ +++|.++|++|++++|+||+|....+++... .+....+. .+.+++++||||.+|++| ||++
T Consensus 187 ~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~---g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~ 257 (406)
T PRK13393 187 YSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG---GIAEREGLADRLTIIEGTLAKAFGVMG---GYIT 257 (406)
T ss_pred CCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCC---chhhhcCCCCCCeEEEEeCchhhcccC---ceee
Confidence 999999987 6688999999999999999976333222111 11111122 224688899999999888 8985
Q ss_pred EEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 013839 284 ILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN 361 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 361 (435)
+ +++ +++.+.+.... .+.+.+...+.++.++|+... +. ...+++++++++++.+.|++++.
T Consensus 258 ~---~~~----~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~------~~-~~~~~~~~~~~~~l~~~L~~~g~--- 320 (406)
T PRK13393 258 G---SAA----LCDFIRSFASGFIFTTSLPPAVAAGALASVRHLK------AS-SAERERHQDRVARLRARLDKAGI--- 320 (406)
T ss_pred C---CHH----HHHHHHHhCcCceecCccCHHHHHHHHHHHHHHh------hC-HHHHHHHHHHHHHHHHHHHHcCC---
Confidence 3 777 77777765443 233455566666666664321 11 22346678888899999988763
Q ss_pred ccccccCcceeEec-CC--C-HHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 362 WEHITNQLGMFCFS-GL--T-PYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 362 ~~~~~~~~g~~~~~-~~--~-~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
...++.+.++.+. +- + .++...+++++||.+.++ | ||++.. .+++++++++++|++++++..
T Consensus 321 -~~~~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~ 398 (406)
T PRK13393 321 -PHLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARLG 398 (406)
T ss_pred -CcCCCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3445556544332 21 1 233455555579999642 2 888742 388999999999999887643
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=192.35 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=192.6
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
...++++.+++++ +.. ++. +++|+++++.++ +.+++.+||+|+++.++|......++..|++++.++.
T Consensus 64 ~~~~l~~~lA~~~-g~~-------~~~--~~~g~t~a~~~a--l~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~ 131 (387)
T PRK09331 64 PIADFHEDLAEFL-GMD-------EAR--VTHGAREGKFAV--MHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPK 131 (387)
T ss_pred HHHHHHHHHHHHh-CCC-------cEE--EeCCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence 4689999999998 332 445 799999998888 7777899999999999987777778889999999986
Q ss_pred cCCCCCCcChHhHHHHhhcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 173 YDPDSKSLDFAALMDDIKNA----PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
..++++.+|++.+++.+++. .++++++++++|+||||... ++++|.++|++||+++++|++|...... .
T Consensus 132 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~---~l~~I~~la~~~g~~livD~a~~~g~~~-~--- 204 (387)
T PRK09331 132 TGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA---DAKKVAKVAHEYGIPFLLNGAYTVGRMP-V--- 204 (387)
T ss_pred ccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc---cHHHHHHHHHHcCCEEEEECCcccCCcC-C---
Confidence 21345789999999998742 13689999999999999765 4679999999999999999997543211 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc--------ccCCChhHHHHHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM--------YGSPPVHGILLVAT 320 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~q~~~~~ 320 (435)
+... .+..+++.|++|+++ .+.|+||+++ +++ +++.+.+..... ..+.+.....++..
T Consensus 205 --~~~~----~g~D~~~~s~~K~l~-~~~~~G~l~~---~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (387)
T PRK09331 205 --DGKK----LGADFIVGSGHKSMA-ASAPSGVLAT---TEE----YADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMA 270 (387)
T ss_pred --CHHH----cCCCEEEeeCccccc-CCCCEEEEEE---CHH----HHhhcccccCCCcccceeeeceecCchHHHHHHH
Confidence 1111 134688999999998 5568999864 777 666654432111 11121111222222
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccc---cCcceeEe--cCC---------CHHHHHHH
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHIT---NQLGMFCF--SGL---------TPYQVDRL 385 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~---~~~g~~~~--~~~---------~~~~~~~l 385 (435)
.+.. +.+..+ ..++..++.+++++.|+++ | +.... ...++..+ .++ +...+.+.
T Consensus 271 al~~------~~~~~~-~~~~~~~~~~~l~~~L~~l~g----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (387)
T PRK09331 271 SFPH------VVERVK-RWDEEVKKARWFVDELEKIEG----FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEE 339 (387)
T ss_pred HHHH------HHHHHH-HHHHHHHHHHHHHHHHhcCCC----EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHH
Confidence 3321 112222 3445566777888999888 5 33331 12222211 111 11234444
Q ss_pred hhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 386 AKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 386 l~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
|+++||...+.| |+...+.+.+++++++++|++++++..
T Consensus 340 L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~~ 383 (387)
T PRK09331 340 LKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKYG 383 (387)
T ss_pred HHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 467899965443 666544588999999999999887643
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=195.80 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=189.2
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC---CCCEEEEcCCCChhh----HHHHhhCCC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH---PESHIYFPDPTWSNH----HNIWRDAQI 165 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~---~gd~Vlv~~p~y~~~----~~~~~~~g~ 165 (435)
...++|+.+++++.... ++++. +++|+++++.++ +.++.. +||+|++++++|+.. ....+..|+
T Consensus 44 ~~~~~~~~la~~~~~~~-----~~~v~--~~~g~t~a~~~~--~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 114 (373)
T cd06453 44 AYEAAREKVARFINAPS-----PDEII--FTRNTTEAINLV--AYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGA 114 (373)
T ss_pred HHHHHHHHHHHHhCCCC-----CCeEE--EeCCHHHHHHHH--HHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCc
Confidence 35678899998884321 35677 899999999888 566655 899999999999774 334457799
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. ++++.+|++++++.+. ++++++++++++||||...+. ++|.++|++||+++++|++|......
T Consensus 115 ~~~~v~~--~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~-- 184 (373)
T cd06453 115 KLKVVPV--DDDGQLDLEALEKLLT---ERTKLVAVTHVSNVLGTINPV---KEIGEIAHEAGVPVLVDGAQSAGHMP-- 184 (373)
T ss_pred EEEEeec--CCCCCcCHHHHHHHhc---CCceEEEEeCcccccCCcCCH---HHHHHHHHHcCCEEEEEhhhhcCcee--
Confidence 9999987 3456799999999997 578999999999999999875 58999999999999999997532211
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc--------------------
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA-------------------- 305 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 305 (435)
.++ ......+++.|++|.++. .++||+++ +++ +++.+......
T Consensus 185 ----~~~----~~~~~d~~~~s~~K~~~~--~g~g~~~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 247 (373)
T cd06453 185 ----VDV----QDLGCDFLAFSGHKMLGP--TGIGVLYG---KEE----LLEEMPPYGGGGEMIEEVSFEETTYADLPHK 247 (373)
T ss_pred ----eec----cccCCCEEEeccccccCC--CCcEEEEE---chH----HhhcCCCeecCCCccccccccccccCCCccc
Confidence 011 111235677889999985 56899864 777 65555432210
Q ss_pred -cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc---cCcceeEec--CCCH
Q 013839 306 -MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT---NQLGMFCFS--GLTP 379 (435)
Q Consensus 306 -~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~g~~~~~--~~~~ 379 (435)
...+++.....++..++.... +...+..+++.+++++++.+.|++++. +.... ..++++.+. +.+.
T Consensus 248 ~~~~t~~~~~~~al~~al~~l~-----~~g~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 319 (373)
T cd06453 248 FEAGTPNIAGAIGLGAAIDYLE-----KIGMEAIAAHEHELTAYALERLSEIPG---VRVYGDAEDRAGVVSFNLEGIHP 319 (373)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH-----HcCHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCccccCCeEEEEECCcCH
Confidence 011334344444444443211 123466777788888899999988742 23322 234433332 3455
Q ss_pred HHHHHHhhhccEEEeCC--------------C--cEEecc-CCCCcHHHHHHHH
Q 013839 380 YQVDRLAKEFHIYMTQD--------------G--RISMAG-VTTGNVNYLANAI 416 (435)
Q Consensus 380 ~~~~~ll~~~gI~i~pg--------------g--Ris~~~-~~~e~i~~~~~~l 416 (435)
+.+.+.|+++||.+.+| + |++++. .++++++++++.|
T Consensus 320 ~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 320 HDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 55544556789998643 2 999863 2788899888764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=195.34 Aligned_cols=345 Identities=11% Similarity=0.036 Sum_probs=212.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.....-| ..++...+.+.+++... .+.+.+..+.+.. .++++++......+. .+++. ++++|
T Consensus 38 ~dG~~~lD~~~g~~~~~lG-h~~~~i~~a~~~~~~~~-~~~~~~~~~~~~~-~~la~~l~~~~~~~~-~~~~~--f~~sG 111 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLKKL-SHTCFQVLAYEPY-LELCEKMNQKVPGDF-AKKTL--LVTTG 111 (425)
T ss_pred CCCCEEEEcCCchhhcCCC-CCCHHHHHHHHHHHhhC-CCccccccCCHHH-HHHHHHHHHhCCCCC-CCEEE--EeCCc
Confidence 3677899998875311112 12334444444454432 1222222223333 366666633211100 13566 78999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeee----------------eeecCCCCCCcC----hHhHH
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERT----------------YHYYDPDSKSLD----FAALM 186 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----------------v~~~~~~~~~~d----~e~l~ 186 (435)
++|++.++.+...+....+|+..+++|.+....+...+..... +|. +.+ +.+ ++.++
T Consensus 112 sea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~--~~~~~~~~~~l~ 188 (425)
T PRK08088 112 SEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC-PLH--GVSEDDAIASIE 188 (425)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCc-ccc--CccHHHHHHHHH
Confidence 9999988755544444466777799998886554443322110 121 111 122 45677
Q ss_pred HHhhc--CCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 187 DDIKN--APDSSFFLLH-PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 187 ~~i~~--~~~~~~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+.+.+ .+++..++++ +..+|++....+.+.+++|.++|++|++++|+||+|.++...+ ...++... +.+.
T Consensus 189 ~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g---~~~~~~~~----~~~p 261 (425)
T PRK08088 189 RIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG---TLFAMEQM----GVAA 261 (425)
T ss_pred HHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhHHhhc----CCCC
Confidence 77752 2234455554 5567887788899999999999999999999999999876543 12222111 2234
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
-+.||||.++ +|+|+||+++ +++ +++.+.......+.+.+.+.|.++..+|+... ..++++..++..+
T Consensus 262 di~s~sK~l~-~G~rig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~ 329 (425)
T PRK08088 262 DLTTFAKSIA-GGFPLAGVTG---RAE----VMDAIAPGGLGGTYAGNPIACAAALAVLKVFE----QENLLQKANALGE 329 (425)
T ss_pred CEEEEecccc-CCCcceeeEe---cHH----HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 4789999999 9999999974 888 77777665556677788999999999987542 1244555555544
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC---------C---HHHHHHHhhhccEEEeCCC------cEEec-cC
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---------T---PYQVDRLAKEFHIYMTQDG------RISMA-GV 404 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---------~---~~~~~~ll~~~gI~i~pgg------Ris~~-~~ 404 (435)
+.++.+.+.+...+. +...... |+++|+.+ + ...+...+.+.||.+.|++ |++++ ..
T Consensus 330 ~~~~~l~~l~~~~~~---~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~ 405 (425)
T PRK08088 330 KLKDGLLAIAEKHPE---IGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTI 405 (425)
T ss_pred HHHHHHHHHHHhCCC---eEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCc
Confidence 444555444444432 2222223 77888865 1 2233333346899888753 99987 35
Q ss_pred CCCcHHHHHHHHHHHHHhh
Q 013839 405 TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~ 423 (435)
++++|++++++|+++++..
T Consensus 406 t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 406 EDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 7899999999999998653
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=190.95 Aligned_cols=330 Identities=12% Similarity=0.061 Sum_probs=214.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...||+..|.-. .+....+++++++.+++... ..+++ .-..++++++++.+.+.. ...+. ++++|+
T Consensus 27 dg~~~lD~~s~~~~--~~lG~~p~v~~a~~~~~~~~--~~~~~-~~~~~~~~~la~~l~~~~-----~~~~~--~~~SGs 94 (375)
T PRK04260 27 DGKKYLDFSSGIGV--TNLGFHPQVQQALQKQAGLI--WHSPN-LYLNSLQEEVAQKLIGDK-----DYLAF--FCNSGA 94 (375)
T ss_pred CCCEEEECCCCccc--ccCCCCHHHHHHHHHHHHhc--CcccC-ccCCHHHHHHHHHHhcCc-----CCEEE--EcCccH
Confidence 56788999877410 11122334444445554321 11222 234678899998874421 11234 789999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhH-HHHhhCCCC---------eeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHH-NIWRDAQIP---------ERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~---------~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+|+..+..+.....++++|++.+.+|.+.. ..+...|.+ +..++.. . -.|++.+++.+. ++..
T Consensus 95 eA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~dl~~l~~~l~---~~~a 167 (375)
T PRK04260 95 EANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA-I---FNDLNSVKALVN---KNTA 167 (375)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe-C---CCCHHHHHHhcC---CCeE
Confidence 999988655444456688999999887643 222222211 1111110 0 137889988885 5678
Q ss_pred EEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++.+++|++|... +.+.++++.++|+++|+++|+||+|.++...+ ..++.... +.... +.||||.++ +|
T Consensus 168 ~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g---~~~~~~~~-~~~pd---i~t~sK~l~-~G 239 (375)
T PRK04260 168 AVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG---KLYAFEHY-GIEPD---IFTLAKGLA-NG 239 (375)
T ss_pred EEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---chhhhHhh-CCCCC---EEEeccccc-CC
Confidence 999999999999975 46779999999999999999999998776543 12222122 22222 348999998 89
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||+++ +++ +.+.+.......+.+.+.+.+.++.+.|+... ..+..++.++..+..++.+.+.+.+.
T Consensus 240 ~~ig~~~~---~~~----~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (375)
T PRK04260 240 VPVGAMLA---KSS----LGGAFGYGSHGSTFGGNKLSMAAASATLDIML----TAGFLEQALENGNYLQEQLQKALQDK 308 (375)
T ss_pred cceEEEEE---cHH----HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999975 777 77766543344556678888888888886432 12445666666777777777666655
Q ss_pred CCCCCccccccCcceeEecCC--CHHHHHHHhhhccEEEeCCC----cEEe-ccCCCCcHHHHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG----RISM-AGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg----Ris~-~~~~~e~i~~~~~~l~~~ 419 (435)
+. +.... ..|+++|+.+ +.+.+.+.+.++||.+.|.+ |+++ ...+++++++++++|+++
T Consensus 309 ~~---~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 309 ET---VTTVR-GLGYMIGIETTADLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred CC---eeEEe-ccceEEEEEecCcHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 32 22222 3688898865 34445444467899998875 8887 556899999999998765
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=191.67 Aligned_cols=328 Identities=12% Similarity=0.107 Sum_probs=205.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC-CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL-ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..+|+..|.....-| ...+++++++.+++...... .+.......+|.+.++++. + .+.+. ++++
T Consensus 37 ~~G~~~lD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~--~~~S 105 (396)
T PRK04073 37 PEGNRYMDMLSAYSAVNQG-HRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT-G-------KDMVL--PMNT 105 (396)
T ss_pred CCCCEEEEcCCCHHhccCC-CCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC-C-------CCeEE--EcCC
Confidence 3667889987774211111 11233334444444321111 0111122234555555543 2 13556 8999
Q ss_pred chhHHHHHHHHHHHh-------CCC-CEEEEcCCCChhhHH-HHhhCCCC------------eeeeeecCCCCCCcChHh
Q 013839 126 GTGACRLFAEFQRRF-------HPE-SHIYFPDPTWSNHHN-IWRDAQIP------------ERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 126 g~~a~~~~~~~~~~~-------~~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~e~ 184 (435)
|++|++.+..+.... .+| ++|+..+-+|.+... .+...+.. +..++. .|++.
T Consensus 106 GseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 178 (396)
T PRK04073 106 GAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEA 178 (396)
T ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHH
Confidence 999999886544332 134 778888877766542 22222211 111111 27889
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEE-QWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+++.+. ++++++++++++||||..++.+ .+++|.++|++||+++|+||+|.++...+ ..... ...+...+
T Consensus 179 l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g---~~~~~-~~~~~~pd-- 249 (396)
T PRK04073 179 LKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG---KLFAC-DWDNVTPD-- 249 (396)
T ss_pred HHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc---HHHHh-hhcCCCCC--
Confidence 988886 5789999999999999998765 69999999999999999999999887643 11121 11122122
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+.++||.+|.+|+|+||+++ +++ +++.+.......+.+.+.+++.++.+.|+... + ....++.+
T Consensus 250 -i~~~sK~lg~gg~~ig~~~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~------~--~~l~~~~~ 313 (396)
T PRK04073 250 -MYILGKALGGGVFPISCVAA---NRD----ILGVFTPGSHGSTFGGNPLACAVSIAALEVLE------E--EKLPERSL 313 (396)
T ss_pred -EEEecccccCCCCcceEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH------h--cCHHHHHH
Confidence 33579999988899999974 777 77777654444566778888888888875321 1 23445667
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC--CHH-HHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--TPY-QVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANA 415 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~~~-~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~ 415 (435)
++++++.+.|++++.+ .+....+. |.|+++.+ +.+ +..++ .++||.+.+.+ ||++. ..+++++++++++
T Consensus 314 ~~~~~l~~~L~~l~~~-~i~~~~~~-g~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~ 390 (396)
T PRK04073 314 ELGEYFKEQLKEIDNP-MIKEVRGR-GLFIGVELNEPARPYCEAL-KEEGLLCKETHETVIRFAPPLVITKEELDWAFEK 390 (396)
T ss_pred HHHHHHHHHHHhhcCC-cccceecc-eEEEEEEecchHHHHHHHH-HHCCeEEecCCCCEEEEECCcccCHHHHHHHHHH
Confidence 7788888888877532 23333444 45666655 233 44555 56899998754 88842 2389999999999
Q ss_pred HHHHH
Q 013839 416 IHEVT 420 (435)
Q Consensus 416 l~~~l 420 (435)
|++++
T Consensus 391 l~~~l 395 (396)
T PRK04073 391 IKAVL 395 (396)
T ss_pred HHHHh
Confidence 98765
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-22 Score=192.68 Aligned_cols=339 Identities=11% Similarity=0.042 Sum_probs=213.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...+|+..|.....-|.. .+++++++.+++... ....|.. ....+|.+.+++.. + .+++. +++
T Consensus 36 ~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~-~-------~~~v~--~~~ 103 (406)
T PRK12381 36 QQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGNGYTN-EPVLRLAKKLIDAT-F-------ADRVF--FCN 103 (406)
T ss_pred CCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccCccCC-HHHHHHHHHHHhhC-C-------CCeEE--EcC
Confidence 356789999886321222323 334455555555321 1111211 12234555555543 1 24677 899
Q ss_pred CchhHHHHHHHHHHHhC------CCCEEEEcCCCChhhHHHHhhCCCCeee----eeecC--CCCCCcChHhHHHHhhcC
Q 013839 125 SGTGACRLFAEFQRRFH------PESHIYFPDPTWSNHHNIWRDAQIPERT----YHYYD--PDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~--~~~~~~d~e~l~~~i~~~ 192 (435)
+|++|++.+..+..... +..+|+..+.+|.+........+..... .++.. ......|++.+++.+.
T Consensus 104 sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-- 181 (406)
T PRK12381 104 SGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID-- 181 (406)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc--
Confidence 99999999975544331 3478999999998876433322221100 01100 0001247889998886
Q ss_pred CCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDP--TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
++++++++ .|.||+|-+. +.+.+++|.++|++||+++|+||+|.+++..+ ..+....+ +.... +.|+||
T Consensus 182 -~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G---~~~~~~~~-~v~pD---i~t~sK 252 (406)
T PRK12381 182 -DQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY-GVTPD---VLTTAK 252 (406)
T ss_pred -CCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc---chhhhHhh-CCCCC---EEEehh
Confidence 56777777 6899997654 68999999999999999999999998886654 12222222 11111 358999
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.++ +|+|+||+++ +++ +++.+.......+.+.+++.+.++.+.|+.- .....+++++++.+++.
T Consensus 253 ~l~-gG~~ig~~~~---~~~----~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l--------~~~~~~~~~~~~~~~l~ 316 (406)
T PRK12381 253 ALG-GGFPIGAMLT---TEK----CASVMTVGTHGTTYGGNPLASAVAGKVLELI--------NTPEMLNGVKQRHDWFV 316 (406)
T ss_pred hhh-CCCceEEEEE---cHH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHH
Confidence 999 8999999974 777 7777765444455677888888888876421 12246778888888888
Q ss_pred HHHHhhCCCCCccccccCcceeEecCCC------HHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGLT------PYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+.|++++....+.......|++.++.+. ...+...+.++||.+.+.| ||+++. .+++++++++++|.++
T Consensus 317 ~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~ 396 (406)
T PRK12381 317 ERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARA 396 (406)
T ss_pred HHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 8888764211111112234666666442 2344445567899998754 887753 5899999999999999
Q ss_pred HHhhh
Q 013839 420 TRSEQ 424 (435)
Q Consensus 420 l~~~~ 424 (435)
++++.
T Consensus 397 l~~~~ 401 (406)
T PRK12381 397 CERFV 401 (406)
T ss_pred HHHHH
Confidence 87654
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=187.18 Aligned_cols=214 Identities=15% Similarity=0.059 Sum_probs=150.9
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC----hhhHHHHhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTW----SNHHNIWRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y----~~~~~~~~~~g~~ 166 (435)
.....+|+++++++.... ..+ ++.+|++|+..+ +.+++++||+|+++.|.| ..+...++..|++
T Consensus 44 ~p~~~~L~~~lA~l~g~~-------~~v---~~~sG~~ai~~~--l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~ 111 (376)
T PRK06460 44 NPTVLELTKKIVELENAE-------MGV---AFSSGMGAISTT--ALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVN 111 (376)
T ss_pred CccHHHHHHHHHHHhCCC-------cEE---EeCCHHHHHHHH--HHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcE
Confidence 456789999999998432 133 467778888877 677789999999997654 4455667788988
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
+..++.. +.+.+++.+. ++++++++++|+||||.+++.+ +|.++|+++|+++|+|++|......
T Consensus 112 v~~~~~~-------~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d~~---~I~~la~~~g~~vivDea~~~~~~~--- 175 (376)
T PRK06460 112 VDASNPG-------SDNIIEKAKS---KRYDVVFVENITNPLLRVVDIT---ELSKVCKENGSILIVDATFSTPINQ--- 175 (376)
T ss_pred EEEECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcCccccC---
Confidence 8777641 1233444333 5789999999999999999876 7888999999999999998653211
Q ss_pred ccHHHHHHhhhcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
. +. . .+.++++.|+||.++-. |.|+||+++ +++ +++.+++.......+.+.. .+..++...
T Consensus 176 -~--~l----~-~~~divv~S~sK~l~G~~~~~~G~~~~---~~~----l~~~l~~~~~~~g~~~~~~---~a~~~l~~~ 237 (376)
T PRK06460 176 -K--PL----E-LGADIVVHSASKFLAGHNDVIAGLAAG---YGK----LLNVIDQMRRTLGTSLDPH---AAYLTLRGI 237 (376)
T ss_pred -C--hh----h-cCCCEEEeecceeccCCCCceEEEEec---CHH----HHHHHHHHHHhcCCCCCHH---HHHHHHhch
Confidence 0 11 1 13569999999998522 367999863 788 7777776655444444433 233333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.++..+++..++++.+.+.|++.+
T Consensus 238 -------~~l~~r~~~~~~n~~~l~~~L~~~p 262 (376)
T PRK06460 238 -------KTLKIRMDVINRNAEQIAEFLEGHP 262 (376)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777888899999999998764
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=185.87 Aligned_cols=271 Identities=14% Similarity=0.122 Sum_probs=189.4
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~ 167 (435)
....+|.+.++++..... . + .++||++|+.++ + .++.+||+|++++|+|+... ..++..|+++
T Consensus 52 pt~~~le~~la~l~g~~~-------~-~--~~~sG~~ai~~~--~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v 118 (366)
T PRK08247 52 PTRGVLEQAIADLEGGDQ-------G-F--ACSSGMAAIQLV--M-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRF 118 (366)
T ss_pred chHHHHHHHHHHHhCCCc-------E-E--EEcCHHHHHHHH--H-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceE
Confidence 346789999999974321 2 2 588999998765 3 56789999999999998743 3445688888
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. .|++.+++++. ++++++++++|+||+| +..++++|+++|++||+++|+|++|.......
T Consensus 119 ~~vd~-------~d~~~l~~~i~---~~tklv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~--- 182 (366)
T PRK08247 119 VYVNT-------ASLKAIEQAIT---PNTKAIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR--- 182 (366)
T ss_pred EEECC-------CCHHHHHHhcc---cCceEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCccccccC---
Confidence 87754 37899999887 6789999999999975 57889999999999999999999984322111
Q ss_pred cHHHHHHhhhcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
++ ....++++.|+||.++-+ +.+.||++ +++++ +.+.+...+......++.+.+.++...++.
T Consensus 183 ---p~-----~~g~di~i~S~sK~~~g~~d~~~G~iv--~~~~~----l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-- 246 (366)
T PRK08247 183 ---PL-----EEGADIVIHSATKYLGGHNDVLAGLVV--AKGQE----LCERLAYYQNAAGAVLSPFDSWLLIRGMKT-- 246 (366)
T ss_pred ---ch-----hcCCcEEEeecceeccCCCceeeeEEe--cChHH----HHHHHHHHHHhcCCCCChHHHHHHHhccCc--
Confidence 11 124579999999998643 45889885 32356 666666655555556667777766665543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-c-cccCcceeEecCC-CHHHHHHHhh-------------hcc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-H-ITNQLGMFCFSGL-TPYQVDRLAK-------------EFH 390 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~~~~g~~~~~~~-~~~~~~~ll~-------------~~g 390 (435)
+....++.+++++.+.+.|++++. +. + .++.+|+|.|. + ..+...++++ ...
T Consensus 247 --------l~~r~~~~~~~a~~l~~~L~~~p~---v~~v~~P~~gg~~sf~-~~~~~~~~~~~~~l~~~~~~~slg~~~s 314 (366)
T PRK08247 247 --------LALRMRQHEENAKAIAAFLNEQPG---VTDVLYPGRGGMLSFR-LQDEEWVNPFLKSLKLITFAESLGGVES 314 (366)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCCC---eeEEecCCcCcEEEEE-ECCHHHHHHHHHcCCcceEccCCCCCce
Confidence 233445678888999999988742 32 2 44489999984 4 2332333322 123
Q ss_pred EEEeCC---------------C------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 391 IYMTQD---------------G------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 391 I~i~pg---------------g------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.+.|+ | |+|++- |+.+.+++.|.++++.
T Consensus 315 l~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 315 FITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred EEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 343343 1 888754 7888888888888764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=189.85 Aligned_cols=301 Identities=14% Similarity=0.034 Sum_probs=200.3
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC-----
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH----- 141 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~----- 141 (435)
+.++..+.+.+....+.....|....+..++++++++++...-+.+..++++. +|.||++|+.++. .++..
T Consensus 9 ~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~--~t~ggt~a~~~al--~~~~~~~~~~ 84 (345)
T cd06450 9 MDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGV--FTSGGSESNLLAL--LAARDRARKR 84 (345)
T ss_pred CcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEE--EeCChhHHHHHHH--HHHHHHhhhh
Confidence 34445555566655544345588888999999999888732211111134666 8999999998884 33221
Q ss_pred -------CC--CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEEEEeCCCCCCCC
Q 013839 142 -------PE--SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 142 -------~g--d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~v~~~~p~NPtG 209 (435)
+| ++|++++++|..+...+...|.+++.+++ ++ ++.+|+++|++++.+ ...+++++++++|+||||
T Consensus 85 ~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG 162 (345)
T cd06450 85 LKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV-DE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTG 162 (345)
T ss_pred hhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee-CC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCC
Confidence 23 47888999999988888888999999988 33 458999999999973 112678888999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
... ++++|+++|+++|+++++|++|..+.... + ..... .....+-+.+..|++|.++ ++.++|++.
T Consensus 163 ~~~---~~~~i~~~~~~~~~~l~vD~a~~~~~~~~-~--~~~~~-~~~~~~~d~~~~s~~K~l~-~p~g~g~~~------ 228 (345)
T cd06450 163 AID---PLEEIADLAEKYDLWLHVDAAYGGFLLPF-P--EPRHL-DFGIERVDSISVDPHKYGL-VPLGCSAVL------ 228 (345)
T ss_pred CCC---CHHHHHHHHHHhCCeEEEechhhHHHhhC-h--hhHHH-hcCccccCEEEEchhHhhC-CCcchHHHH------
Confidence 974 56799999999999999999987766431 1 11110 1111233456779999765 667788773
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-ccC
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TNQ 368 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~ 368 (435)
.+ .+.+.++...+.. ...++.+++..++++++.+.|++++. +... +++
T Consensus 229 ------~~--------------~~~~~~~l~~l~~--------~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~ 277 (345)
T cd06450 229 ------VR--------------ALKLWATLRRFGR--------DGYGEHIDRIVDLAKYLAELIRADPG---FELLGEPN 277 (345)
T ss_pred ------HH--------------HHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCc
Confidence 11 3444444444432 34566777888888999999988752 3333 345
Q ss_pred cceeEec--C-----CCHHHHHHHhhhccEEEeCC------C--cEEeccC--CCCcHHHHHHHHHH
Q 013839 369 LGMFCFS--G-----LTPYQVDRLAKEFHIYMTQD------G--RISMAGV--TTGNVNYLANAIHE 418 (435)
Q Consensus 369 ~g~~~~~--~-----~~~~~~~~ll~~~gI~i~pg------g--Ris~~~~--~~e~i~~~~~~l~~ 418 (435)
.+++.|. + .+...+.+.|.++|+.+.++ + |+++... +.+++++++++|++
T Consensus 278 ~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 278 LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 6666554 2 22334444445665444332 1 9998642 77889999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=185.16 Aligned_cols=214 Identities=12% Similarity=0.055 Sum_probs=155.9
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~ 167 (435)
.-..+|++.++++..+. ..+ ++++|++|+.++ +.+++.+||+|+++.|+|.+.... +...|+++
T Consensus 64 p~~~~le~~lA~l~g~~--------~~i--~~ssG~~Ai~~~--l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v 131 (398)
T PRK08249 64 PTVQAFEEKVRILEGAE--------AAT--AFSTGMAAISNT--LYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDV 131 (398)
T ss_pred hHHHHHHHHHHHHhCCC--------eEE--EeCChHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEE
Confidence 44578999999987432 233 688889998888 777789999999999999876443 44677777
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. .|++.++++++ +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 132 ~~vd~-------~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~--- 195 (398)
T PRK08249 132 TLCET-------GDHEQIEAEIA---KGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN--- 195 (398)
T ss_pred EEcCC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC---
Confidence 66542 58899999997 67899999999999999987 5588999999999999999987544321
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+.. ....+++.|+||.++.+|.++|++++ + +++ ++++++..........+.+.++.+...+
T Consensus 196 ---~l~-----~~~Divv~S~sK~l~g~~~~~gG~vv-~-~~~----l~~~l~~~~~~~g~~~s~~~a~l~l~~l----- 256 (398)
T PRK08249 196 ---PLA-----LGADLVIHSATKFLSGHADALGGVVC-G-SKE----LMEQVYHYREINGATMDPMSAYLILRGM----- 256 (398)
T ss_pred ---chh-----hCCCEEeccCceecCCCCCceEEEEE-C-CHH----HHHHHHHHHHhcCCCCCHHHHHHHHhCc-----
Confidence 111 12347889999999877888755432 3 777 7777776655555556666555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..++++.+.+.|++++
T Consensus 257 -----~tL~~R~~~~~~na~~la~~L~~~p 281 (398)
T PRK08249 257 -----KTLKLRVRQQQESAMALAKYLQTHP 281 (398)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344555667778888888888765
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=183.94 Aligned_cols=213 Identities=12% Similarity=0.052 Sum_probs=150.0
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~ 168 (435)
-...|++.+++++... ... ++.+|+.|+..+ +..++.+||+|+++.|.|..+...+ ...|++++
T Consensus 66 ~~~~Le~~lA~l~G~~--------~~~--~~~sG~~Ai~~~--l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 133 (398)
T PRK07504 66 TVDMFEKRMCALEGAE--------DAR--ATASGMAAVTAA--ILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIEST 133 (398)
T ss_pred hHHHHHHHHHHHhCCC--------eee--EecCHHHHHHHH--HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEE
Confidence 4678999999987332 122 477888888766 6667899999999999998765543 35677776
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++ .+|+++++++++ +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+..
T Consensus 134 ~vd-------~~d~e~l~~ai~---~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~---- 196 (398)
T PRK07504 134 LVD-------GLDLDNWEKAVR---PNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK---- 196 (398)
T ss_pred EEC-------CCCHHHHHHhcC---cCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC----
Confidence 663 268999999987 68899999999999999887 5688899999999999999987544321
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH-HHHHHhhccccCCChhHHHHHHHHhCChhh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS-QIQQIARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+. + .+.++++.|+||.++.+|+|+|++++ + +++ .+. .++...+.....++.+.+..+...|
T Consensus 197 --~~----~-~gaDivv~S~sK~l~g~g~~~GG~vv-~-~~~----~i~~~~~~~~~~~g~~~s~~~A~~~l~~L----- 258 (398)
T PRK07504 197 --PL----E-LGAHIVVYSATKHIDGQGRCLGGVVL-S-DKA----WIEEHLQDYFRHTGPSLSPFNAWTLLKGL----- 258 (398)
T ss_pred --ch----h-hCCCEEEeeccccccCCccceEEEEE-e-CcH----HHHHHHHHHHHHhCCCCCHHHHHHHHhcc-----
Confidence 11 1 13467899999999989999976552 4 555 332 3443333333444544444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..++...+.+.|++++
T Consensus 259 -----~tl~~R~~~~~~na~~la~~L~~~p 283 (398)
T PRK07504 259 -----ETLPVRVRQQTESAAAIADFLAGHP 283 (398)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344555556677777788887764
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=186.01 Aligned_cols=287 Identities=16% Similarity=0.116 Sum_probs=190.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH---hCCCCEEEEcCCCChhhHH---HHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR---FHPESHIYFPDPTWSNHHN---IWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~ 167 (435)
..++|+.+++++ +.. ++++. ++.|+++++.+++ ..+ ..+||+|++....|+.+.. .++..|+++
T Consensus 44 ~~~~r~~la~~~-g~~-----~~~i~--~t~~~t~a~~~al--~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v 113 (379)
T TIGR03402 44 VEEAREQVAKLL-GAE-----PDEII--FTSGGTESDNTAI--KSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKV 113 (379)
T ss_pred HHHHHHHHHHHh-CCC-----CCeEE--EeCcHHHHHHHHH--HHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEE
Confidence 457778888887 332 45787 8999999998873 333 2457899998888876644 344569999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. ++++.+|++++++.++ ++++++++++++||||..++.+ +|.++|++||+++++|+++.. ...+.
T Consensus 114 ~~v~~--~~~g~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~~~~~-g~~~~-- 182 (379)
T TIGR03402 114 TYLPV--DEEGRLDLEELRAAIT---DDTALVSVMWANNETGTIFPIE---EIGEIAKERGALFHTDAVQAV-GKIPI-- 182 (379)
T ss_pred EEEcc--CCCCcCCHHHHHHhcC---CCcEEEEEEcccCCeeecccHH---HHHHHHHHcCCEEEEECcccc-ccccc--
Confidence 99887 3346799999999997 6789999999999999999865 899999999999999999642 21111
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH--H-HhhccccCCChhHHHHHHHHhCC
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ--Q-IARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ ...+-++++.|.+|.+|.+| +|++.+ .++. .+...+. . .......+++.....++..+++.
T Consensus 183 ---~~----~~~~~D~~~~s~~K~~gp~G--~g~l~v---~~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~ 248 (379)
T TIGR03402 183 ---DL----KEMNIDMLSLSGHKLHGPKG--VGALYI---RKGT--RFRPLLRGGHQERGRRAGTENVPGIVGLGKAAEL 248 (379)
T ss_pred ---Cc----ccCCCCEEEEcHHHcCCCCc--eEEEEE---CCCC--CCCCcccCCccCCCcCCCCccHHHHHHHHHHHHH
Confidence 11 11234577788889887666 677753 3331 0110010 0 00011234444544555555532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccccc-----CcceeEe-cCCCHHHHHHHhhhccEEEeCC-
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHITN-----QLGMFCF-SGLTPYQVDRLAKEFHIYMTQD- 396 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~-----~~g~~~~-~~~~~~~~~~ll~~~gI~i~pg- 396 (435)
. .+.++...++++++++.+.+.|++ ++. +....+ .+.+.+| .+.+.+.+...|+++||.+.+|
T Consensus 249 ~------~~~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~ 319 (379)
T TIGR03402 249 A------TEHLEEENTRVRALRDRLEAGLLARIPD---ARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGS 319 (379)
T ss_pred H------HHhHHHHHHHHHHHHHHHHHHHHhhCCC---EEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchh
Confidence 2 134566667888888888888875 431 223221 1223333 3567766666667899998753
Q ss_pred ------------------------C--cEEeccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 397 ------------------------G--RISMAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 ------------------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
| |+|+... +++|++++++.|+++++++.
T Consensus 320 ~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 320 ACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred hcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 9998643 78999999999999987654
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=183.70 Aligned_cols=274 Identities=14% Similarity=0.081 Sum_probs=179.7
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh----CCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD----AQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~ 167 (435)
....+|.+.++++... ++.+ ++.+|+.|+..+ +.+++.+||+|+++.|.|......+.. .|+++
T Consensus 61 pt~~~Le~~lA~l~G~-------~~al---~~~sG~~Ai~~~--l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~ 128 (386)
T PRK06767 61 PTVKLFEERMAVLEGG-------EEAL---AFGSGMAAISAT--LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITH 128 (386)
T ss_pred cchHHHHHHHHHHhCC-------CcEE---EECCHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEE
Confidence 3467899999999842 2233 578888888777 777789999999999999876655443 34333
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
..++ ..|++++++++. +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 129 ~~~~-------~~d~~~l~~~i~---~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~--- 192 (386)
T PRK06767 129 SFCD-------METEADIENKIR---PNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR--- 192 (386)
T ss_pred EEeC-------CCCHHHHHHhhC---cCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 3332 247889998887 67899999999999999887 4688899999999999999985432221
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCCh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~ 325 (435)
++ . ...++++.|+||.++.+|.|+ ||++ + +++ ++..+.+..+ .....++.+.++++...|+.
T Consensus 193 ---pl----~-~g~Div~~S~sK~l~g~g~~~gG~v~--~-~~~----~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t- 256 (386)
T PRK06767 193 ---PL----E-LGCDAVVHSATKYIGGHGDVVAGVTI--C-KTR----ALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT- 256 (386)
T ss_pred ---ch----h-cCCcEEEecCcceecCCCCceeEEEE--e-ChH----HHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-
Confidence 11 1 123578899999999889986 7775 3 666 5554433222 22233455544444334432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc---------ccccCcceeEec-CCC---HHHHHHHhhhccEE
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE---------HITNQLGMFCFS-GLT---PYQVDRLAKEFHIY 392 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~g~~~~~-~~~---~~~~~~ll~~~gI~ 392 (435)
+....++.+++...+.+.|++++.-..+. .....+|++.|. .-+ ...+.+.|+..++.
T Consensus 257 ---------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~ 327 (386)
T PRK06767 257 ---------LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIA 327 (386)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEe
Confidence 34455677888888899998875311111 111235655544 112 22233333556766
Q ss_pred EeCCC-------------------------------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 393 MTQDG-------------------------------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 393 i~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+.-|| |+|++- |+.+.+++-|.+++.
T Consensus 328 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 328 VSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred cCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 65442 888754 678888888887775
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=183.61 Aligned_cols=329 Identities=12% Similarity=0.024 Sum_probs=204.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC-CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL-ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
++...+|+..|......| ...+.+++++.+++...... .+-......+|.+.++++. +. +++. ++++|
T Consensus 39 ~g~~~lD~~~~~~~~~~G-h~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-------~~~~--~~~SG 107 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQG-HCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT-GS-------HKVL--PMNSG 107 (401)
T ss_pred CCCEEEEcCcchhhccCC-CCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC-CC-------CEEE--EeCCc
Confidence 567788887764211111 11333444444454422111 1112223445666666654 22 2555 89999
Q ss_pred hhHHHHHHHHHHHh-------CCC-CEEEEcCCCChhhHHHHhhCCCC-------------eeeeeecCCCCCCcChHhH
Q 013839 127 TGACRLFAEFQRRF-------HPE-SHIYFPDPTWSNHHNIWRDAQIP-------------ERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 127 ~~a~~~~~~~~~~~-------~~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l 185 (435)
++|++++..++... .+| ++|++.+-+|.+....+...+.. +..++ -.|+++|
T Consensus 108 s~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l 180 (401)
T PRK00854 108 AEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEAL 180 (401)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHH
Confidence 99999996444332 134 68888888886654333222211 11221 1378999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTE-EQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~-~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
++.+. +++++|++++|+||+|.++++ +.+++|.++|++||+++|+||+|.+++..+. .... ...+....++
T Consensus 181 e~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~---~~~~-~~~g~~~D~~- 252 (401)
T PRK00854 181 EAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK---LLAE-EHEGIEADVT- 252 (401)
T ss_pred HHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch---HhHH-hhcCCCCCEE-
Confidence 99887 678999999999999999974 4699999999999999999999987765431 1111 1112111222
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+ +||.++...+|+||+++ +++ +++.+.......+.+.+.+.+.++.+.|+... + ....+++++
T Consensus 253 ~--~~K~l~gg~~~ig~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~------~--~~~~~~~~~ 315 (401)
T PRK00854 253 L--IGKALSGGFYPVSAVLS---NSE----VLGVLKPGQHGSTFGGNPLACAVARAALKVLT------E--EGMIENAAE 315 (401)
T ss_pred E--ecccccCCccCeEEEEE---cHH----HHhcccCCCCCCCCCcCHHHHHHHHHHHHHHH------H--cCHHHHHHH
Confidence 2 47999744479999964 777 77766544444455678888888888875321 1 235677888
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEec--C--CCH-HHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHH
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--G--LTP-YQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLAN 414 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~--~~~-~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~ 414 (435)
+.+++.+.|++++.+ .+....+.+.++.+. + .+. ++++.+ .++||.+.+.+ |+++. ..++++++++++
T Consensus 316 ~~~~l~~~L~~~~~~-~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L-~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~ 393 (401)
T PRK00854 316 MGAYFLEGLRSIRSN-IVREVRGRGLMLAVELEPEAGGARQYCEAL-KERGLLAKDTHDHTIRLAPPLVITREQVDWALE 393 (401)
T ss_pred HHHHHHHHHHhhccC-ceEEEeccceEEEEEEecCchhHHHHHHHH-HHCCeEEecCCCCEEEEeCCcccCHHHHHHHHH
Confidence 888899999887532 111224455555542 1 122 344555 45799998753 88863 348899999999
Q ss_pred HHHHHHH
Q 013839 415 AIHEVTR 421 (435)
Q Consensus 415 ~l~~~l~ 421 (435)
+|++++.
T Consensus 394 ~l~~~l~ 400 (401)
T PRK00854 394 QIAKVLA 400 (401)
T ss_pred HHHHHhh
Confidence 9998764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=183.68 Aligned_cols=291 Identities=17% Similarity=0.135 Sum_probs=190.7
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHH-HH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ-RR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~-~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
.++++.+++++ +.. ++++. +++||++++..+.... .. ..+||+|++.++.|..+...++..|++++.++.
T Consensus 62 ~~~~~~la~~~-g~~-----~~~~~--~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~ 133 (371)
T PRK13520 62 EEAVEMLGELL-HLP-----DAYGY--ITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPL 133 (371)
T ss_pred HHHHHHHHHHh-CCC-----CCCeE--EecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecC
Confidence 46777777776 432 23555 7999999987773222 11 135799999999999998888889999999887
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
++++.+|+++|++++. ++++.+++..++||||...+ +++|.++|+++|+++++|++|..+...-. .....+
T Consensus 134 --~~~~~~d~~~l~~~i~---~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~-~~~~~~ 204 (371)
T PRK13520 134 --DDDYRVDVKAVEDLID---DNTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFL-DDPPNF 204 (371)
T ss_pred --CCCCcCCHHHHHHHHh---hCCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhh-cCCCCc
Confidence 3456799999999997 55677777788999999876 66889999999999999999875542100 000000
Q ss_pred HHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc--------ccCCChhHHHHHHHHhCC
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM--------YGSPPVHGILLVATILSD 324 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~q~~~~~~l~~ 324 (435)
.+ ....-..+..|..|. +++|.++|++++ .+++ +++.+....... ..+.+.....++..++..
T Consensus 205 -~~-~~~~vd~~~~s~~K~-~~a~~~~G~~~~--~~~~----~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~ 275 (371)
T PRK13520 205 -DF-SLPGVDSITIDPHKM-GLAPIPAGGILF--RDES----YLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKY 275 (371)
T ss_pred -cc-cCCCCceEEECCccc-cCccCCceEEEE--cCHH----HHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhh
Confidence 00 111223445577784 557789998863 3666 555443211110 011222334444445432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-ccccCcceeEecCC-CHHHHHHHhhhccEEEeCCC-----
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-HITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG----- 397 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg----- 397 (435)
-. .+..++.+++..++++++.+.|+++|+ . +..+..+++. +.+ +.+.+.+.|.++||.+.+++
T Consensus 276 l~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~v~-~~~~~~~~v~~~L~~~gi~v~~~~~~~~i 345 (371)
T PRK13520 276 LG-----REGYRKVVERCMENTRWLAEELKERGF----EPVIEPVLNIVA-FDDPNPDEVREKLRERGWRVSVTRCPEAL 345 (371)
T ss_pred hc-----HhHHHHHHHHHHHHHHHHHHHHHhCCC----EEecCCCceEEE-EecCCHHHHHHHHHHCCceeccCCCCCEE
Confidence 11 134567778888999999999988763 3 3445555433 333 45555545566799997752
Q ss_pred cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 398 RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 398 Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
|+|+.. .++++++++++.|+++++
T Consensus 346 Ris~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 346 RIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhh
Confidence 998743 378999999999988764
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=188.05 Aligned_cols=265 Identities=16% Similarity=0.215 Sum_probs=174.3
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-----HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-----IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+.+|+.|+..+ +.+++.+||+|+++.|+|..+.. .+...|++++.++. +.+++.+|++++++.+++ .+++
T Consensus 93 ~~sgt~al~~~--l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~k 167 (416)
T PRK00011 93 PHSGSQANAAV--YFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV-DEETGLIDYDEVEKLALE--HKPK 167 (416)
T ss_pred cCCchHHHHHH--HHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCc-CcccCCcCHHHHHHHHHh--cCCC
Confidence 45678888777 66778999999999999976532 12344677777777 344578999999999973 2577
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++++|| .. .++++|.++|++||+++|+|++|. ++.+.+. .... + + ..+++++|+||.+ +|
T Consensus 168 ~v~~~~~~~~--~~---~~~~~I~~la~~~~~~livD~a~~~g~~~~g~--~~~~---~-~--~~di~~~S~~K~l--~g 232 (416)
T PRK00011 168 LIIAGASAYS--RP---IDFKRFREIADEVGAYLMVDMAHIAGLVAAGV--HPSP---V-P--HADVVTTTTHKTL--RG 232 (416)
T ss_pred EEEECCCcCC--Cc---cCHHHHHHHHHHcCCEEEEECcchhcccccCc--cCCC---C-C--CCcEEEecCCcCC--CC
Confidence 8887666555 32 346799999999999999999964 2222110 0001 1 1 2357799999976 68
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCC-hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPP-VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+|.||++ +.+++ +++.+++.......+.+ ...+.++..++... ..+.+++.+++++++++++.+.|++
T Consensus 233 ~~gg~i~--~~~~~----~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~ 301 (416)
T PRK00011 233 PRGGLIL--TNDEE----LAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA-----LEPEFKEYAQQVVKNAKALAEALAE 301 (416)
T ss_pred CCceEEE--eCCHH----HHHHHHHHhCccccCCccHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8999996 43467 77777665443222222 22222222222211 1234577888999999999999998
Q ss_pred hCCCCCccccc-cCcceeEecCC-----CHHHHHHHhhhccEEEeCC-------------C-cEEe-----ccCCCCcHH
Q 013839 356 LGSSLNWEHIT-NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD-------------G-RISM-----AGVTTGNVN 410 (435)
Q Consensus 356 ~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg-------------g-Ris~-----~~~~~e~i~ 410 (435)
+|. .+.. ...++++|+.+ +.+.+.+.|+++||.+..+ + |++. .++++++++
T Consensus 302 ~g~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~ 377 (416)
T PRK00011 302 RGF----RVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMK 377 (416)
T ss_pred CCC----eeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHH
Confidence 763 3332 12236777644 3455666667899999731 2 7743 134689999
Q ss_pred HHHHHHHHHHHh
Q 013839 411 YLANAIHEVTRS 422 (435)
Q Consensus 411 ~~~~~l~~~l~~ 422 (435)
++++.|++++..
T Consensus 378 ~l~~~l~~~~~~ 389 (416)
T PRK00011 378 EIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=180.11 Aligned_cols=217 Identities=14% Similarity=0.083 Sum_probs=154.3
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCCeeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIPERTY 170 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v 170 (435)
.-...|++.++++..+ ++++ +++||++|+.++ +.+++.+||+|+++.|+|.+....+.. .+...+.+
T Consensus 51 p~~~~le~~lA~l~g~--------~~v~--~~~gg~~Ai~~~--l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v 118 (382)
T TIGR02080 51 PTRDLLQQALAELEGG--------AGAV--VTNTGMSAIHLV--TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRV 118 (382)
T ss_pred chHHHHHHHHHHHhCC--------CcEE--EEcCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEE
Confidence 3457899999998732 2555 899999999988 777789999999999999876554432 22222233
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
...+ ..|++.++++++ +++++|++++|+||||.+++. ++|+++|+++|+++|+|++|.......
T Consensus 119 ~~~d----~~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~dl---~~I~~la~~~g~~vvvD~a~~~~~~~~------ 182 (382)
T TIGR02080 119 LFVD----QGDEQALRAALA---QKPKLVLIETPSNPLLRVVDI---AKICHLAKAVGAVVVVDNTFLSPALQN------ 182 (382)
T ss_pred EEEC----CCCHHHHHHhcC---cCceEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCcccccCC------
Confidence 3212 237899999987 578999999999999999875 588899999999999999996554321
Q ss_pred HHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHH
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
++.. ...++++|+||.++ .+|++.|+++ +.+++ +++++..........++.+.+..+..-+
T Consensus 183 pl~~-----gaDivv~S~sK~l~G~~~~~~G~i~--~~~~~----~~~~l~~~~~~~g~~~sp~~a~l~lr~l------- 244 (382)
T TIGR02080 183 PLAL-----GADLVLHSCTKYLNGHSDVIAGAVI--AKDPQ----VAEELAWWANNLGVTGGAFDSYLTLRGL------- 244 (382)
T ss_pred chhh-----CCCEEEeecceeccCCCCceeEEEE--eCCHH----HHHHHHHHHHccCCCCCHHHHHHHHccc-------
Confidence 1211 12588899999885 5778899985 34667 6777766555555566666555443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..++...+.+.|+.++
T Consensus 245 ---~tl~~R~~~~~~na~~~a~~L~~~p 269 (382)
T TIGR02080 245 ---RTLVARMRLQQRNAQAIVEYLQTQP 269 (382)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2344446667778888888888765
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=180.06 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=152.2
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 169 (435)
..++++.+++++... +++ +++||++|+.++ +.+++.+||+|+++.+.|.+... .+...|++++.
T Consensus 63 ~~~le~~la~l~g~~--------~~v--~~ssG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~ 130 (390)
T PRK08133 63 VTMFQERLAALEGAE--------ACV--ATASGMAAILAV--VMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTF 130 (390)
T ss_pred HHHHHHHHHHHhCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEE
Confidence 568888888887322 344 799999999887 77778999999999998876544 45578988888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++.. |+++++++++ +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 131 vd~~-------d~~~l~~~i~---~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~----- 192 (390)
T PRK08133 131 VDLT-------DLDAWRAAVR---PNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ----- 192 (390)
T ss_pred ECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence 8651 6888998887 67899999999999999875 5699999999999999999975443221
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
++ .. ...+++.|+||.++.+|+++|++++ + +++ +++.+....+.....++.+.+. .++...
T Consensus 193 -pl----~~-g~Divv~S~sK~~~g~g~~~GG~vv-~-~~~----~~~~~~~~~~~~g~~~~~~~a~---~~l~gl---- 253 (390)
T PRK08133 193 -PL----KL-GADVVIHSATKYLDGQGRVLGGAVV-G-SKE----LMEEVFGFLRTAGPTLSPFNAW---VFLKGL---- 253 (390)
T ss_pred -ch----hh-CCcEEEeecceeecCCcceEeEEEE-c-CHH----HHHHHHHHHHHhCCCCCHHHHH---HHHccc----
Confidence 11 11 2357899999999989999865542 4 666 5555554444333344444333 333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..+++..+.+.|++.+
T Consensus 254 ---~tl~~R~~~~~~~a~~la~~L~~~p 278 (390)
T PRK08133 254 ---ETLSLRMEAHSANALALAEWLEAHP 278 (390)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555667778888888888764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=179.62 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=159.5
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~ 167 (435)
.....|++.++++..+ + +++ +++||++|+.++ +.+++.+||+|++++|+|++....+. ..|.++
T Consensus 52 pt~~~L~~~lA~l~g~-------~-~~i--~~~sg~~Ai~~~--l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v 119 (386)
T PRK08045 52 PTRDVVQRALAELEGG-------A-GAV--LTNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRV 119 (386)
T ss_pred ccHHHHHHHHHHHhCC-------C-eEE--EECCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEE
Confidence 3467899999998732 1 355 799999999888 77788999999999999986544333 223344
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
..++ ..|++.+++++. ++++++++++|+||||.+++. ++|.++|+++|+++|+|++|.......
T Consensus 120 ~~vd-------~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~di---~~I~~ia~~~g~~vivDeay~~~~~~~--- 183 (386)
T PRK08045 120 LFVD-------QGDEQALRAALA---EKPKLVLVESPSNPLLRVVDI---AKICHLAREAGAVSVVDNTFLSPALQN--- 183 (386)
T ss_pred EEeC-------CCCHHHHHHhcc---cCCeEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCCccccCC---
Confidence 4332 258899999887 678999999999999999874 588888999999999999986653221
Q ss_pred cHHHHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
++ +. ...++++|++|.++ ..+.+.|+++ +.+++ +++.+.........+.+.+.++.+...|+.
T Consensus 184 ---pl----~~-gaDivv~S~tK~l~G~~d~~~G~vi--~~~~~----~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-- 247 (386)
T PRK08045 184 ---PL----AL-GADLVLHSCTKYLNGHSDVVAGVVI--AKDPD----VVTELAWWANNIGVTGGAFDSYLLLRGLRT-- 247 (386)
T ss_pred ---ch----hh-CCCEEEeecceeccCCCCceeEEEE--eCcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhcc--
Confidence 22 11 12488999999985 5667789885 44666 777777666666677888888877777754
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+...+++..+++..+.+.|+.++
T Consensus 248 --------l~~R~~~~~~na~~la~~L~~~p 270 (386)
T PRK08045 248 --------LVPRMELAQRNAQAIVKYLQTQP 270 (386)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666778888888888888775
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=180.73 Aligned_cols=298 Identities=15% Similarity=0.093 Sum_probs=185.9
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC--
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES-- 144 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd-- 144 (435)
..+++.+.+++...... |. +.+++++++.+++....+. ++++ +++|++.|+.++ +.+++.+||
T Consensus 23 s~~~~~v~~a~~~~~~~----~~---~~~~~~~~~~~~~a~~~g~----~~~~--~~~g~t~al~~a--l~al~~~Gd~~ 87 (363)
T TIGR01437 23 STVSDEVADAQKRGAQN----YF---EIKELVNKTGEYIANLLGV----EDAV--IVSSASAGIAQS--VAAVITRGNRY 87 (363)
T ss_pred CCCCHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHhhCC----CeEE--EEcCHHHHHHHH--HHHHhcCCCcc
Confidence 44555555544443322 32 2445666666655222221 2555 899999999998 777788888
Q ss_pred -------------EEEEcCCCChhh----HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE-eCCCCC
Q 013839 145 -------------HIYFPDPTWSNH----HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL-HPSAHN 206 (435)
Q Consensus 145 -------------~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~-~~~p~N 206 (435)
+|+++.|.|..| ...+...|++++.++. ++.+|++++++++. +++++++ +++|+|
T Consensus 88 ~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~ai~---~~t~ai~~v~~~~~ 160 (363)
T TIGR01437 88 LVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAAIT---EKTAAILYIKSHHC 160 (363)
T ss_pred hhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHhcC---hhceEEEEEecCCC
Confidence 999999888766 4667788999998865 24699999999998 6677655 678899
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|+|...+.+ +|.++|++||+++|+|++|.. + ..... .. +.++++.|++|.+ +|++.|++++
T Consensus 161 ~~g~~~~~~---~i~~~a~~~gi~vivD~a~~~---~-----~~~~~---~~-g~D~~~~S~~K~l--~gp~~G~l~~-- 221 (363)
T TIGR01437 161 VQKSMLSVE---DAAQVAQEHNLPLIVDAAAEE---D-----LQKYY---RL-GADLVIYSGAKAI--EGPTSGLVLG-- 221 (363)
T ss_pred CcCCcCCHH---HHHHHHHHcCCeEEEECCCCC---c-----hHHHH---Hc-CCCEEEEeCCccc--CCCceEEEEE--
Confidence 999988754 889999999999999999751 1 11111 11 2367789999976 5888999863
Q ss_pred cChhHHHHHHHHHHHHhhccc--cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMY--GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
+++ +++.++....... .........++.+++... .+...+..+.+.++++.+.+.|++++. +..
T Consensus 222 -~~~----~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~------~~~~~~~~~~~~~~~~~l~~~L~~i~g---~~~ 287 (363)
T TIGR01437 222 -KKK----YIEWVKLQSKGIGRAMKVGKENILGLTAALEQY------LSTGKESGAEMVAKLTPFIEALNTLKG---VSA 287 (363)
T ss_pred -cHH----HHHHHHhccCCCcceeccCHHHHHHHHHHHHHH------HccCcccHHHHHHHHHHHHHHHhcCCC---eEE
Confidence 776 5555433221100 001111112222222110 111122333444566678888887742 333
Q ss_pred cc--cCcce------eEec----CCCHHHHHHHhhhcc--EEEeC----CC--cEEeccCCCCcHHHHHHHHHHH
Q 013839 365 IT--NQLGM------FCFS----GLTPYQVDRLAKEFH--IYMTQ----DG--RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 365 ~~--~~~g~------~~~~----~~~~~~~~~ll~~~g--I~i~p----gg--Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
.. +..+. ..+. +++.+.+.+.|++.+ |.+++ .| |+++...+++|++.++++|+++
T Consensus 288 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 288 SIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTGGQLDIIVERIREI 362 (363)
T ss_pred EEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence 32 11111 1121 456666666666666 88875 23 7777666889999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=188.51 Aligned_cols=262 Identities=14% Similarity=0.092 Sum_probs=173.5
Q ss_pred CCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhh----CCCCeeeeeecCCCCCCcChHhHHHHh
Q 013839 115 EGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRD----AQIPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 115 ~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
.+++. +++||++++..+ ++++ +.+||+|+++++.|+.+...++. .|++++.++. ++ + .+|++++++++
T Consensus 129 ~~~v~--~~~g~t~~~~~~--~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~-~~-~-~~d~~~l~~~i 201 (447)
T PRK00451 129 VANAS--MYDGATALAEAA--LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY-ED-G-VTDLEALEAAV 201 (447)
T ss_pred cceEE--ecCcHHHHHHHH--HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC-CC-C-CCCHHHHHHhc
Confidence 34666 899999988877 5555 46899999999999988876654 6899999987 33 4 79999999999
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee--eccCCCccCCCCcccHHHHHHhhhcCCeEEEEe-
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF--DMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ- 266 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~--Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 266 (435)
+ ++++++++++| ||||.+.+ +++|.++|+++|+++++ |.+..++.. .....+.++++.
T Consensus 202 ~---~~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~------------~~~~~~~D~~~~s 262 (447)
T PRK00451 202 D---DDTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLK------------PPGEYGADIVVGE 262 (447)
T ss_pred C---CCeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCC------------CcccCCCCEEEEC
Confidence 7 67899999998 99999854 77999999999999988 433211110 011123344444
Q ss_pred --cccccccccCCcccEEEEEecChhHHHHHHHHH----------------------------HHHhhccccCCChhHH-
Q 013839 267 --SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI----------------------------QQIARAMYGSPPVHGI- 315 (435)
Q Consensus 267 --s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q- 315 (435)
+|||.+++.|+|+||+.+ +++ +++.+ +........+.+...+
T Consensus 263 ~~k~~~~~~~~Gpg~G~l~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (447)
T PRK00451 263 GQPLGIPLSFGGPYLGFFAT---RKK----LVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNA 335 (447)
T ss_pred CCcCCCCCCCCCCCchHHHh---hHH----HHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHH
Confidence 788888889999999964 666 55442 1111111112222222
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEe--cC--CCH-HHHHHHhhhcc
Q 013839 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCF--SG--LTP-YQVDRLAKEFH 390 (435)
Q Consensus 316 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~--~~--~~~-~~~~~ll~~~g 390 (435)
.++...+.... ++.+++.++++.++++++.+.|++++. +.+. ++++|.+ +. .+. ++.++|+ ++|
T Consensus 336 ~aaa~~l~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~~g---~~~~--~~~~~~~~~v~~~~~~~~~~~~L~-~~g 404 (447)
T PRK00451 336 LAAAIYMSLLG-----PEGLRELAEQNHQKAHYLAERLAEIGG---VELF--DGPFFNEFVVRLPKPAEEVNEALL-EKG 404 (447)
T ss_pred HHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHhhcCC---EEec--CCCeEEEEEEecCCCHHHHHHHHH-hcC
Confidence 22222222110 256788889999999999999998853 3443 3444443 33 343 4446664 566
Q ss_pred EEE----eCC-----C--cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 391 IYM----TQD-----G--RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 391 I~i----~pg-----g--Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
|.+ .+. + |+++.. .++++++++++.|++++
T Consensus 405 i~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 405 ILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 653 111 1 888752 37889999999998764
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=179.25 Aligned_cols=274 Identities=12% Similarity=0.065 Sum_probs=186.2
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCC
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQI 165 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~ 165 (435)
+......|+++++++. +. +.+ ++.+|++|+.++ +.+++.+||+|++++|+|.++...+ ...|+
T Consensus 49 ~~p~~~~Le~~lA~l~-~~-------~~v---~~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 49 SNPTWRALEAALGELE-GA-------EAL---VFPSGMAAITAV--LRALLRPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred CCccHHHHHHHHHHHc-CC-------CEE---EECCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 4567889999999987 32 233 578888898887 7777899999999999998886644 45788
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++.. ++ .+ .+. ++++++++++|+||||.+. ++++|+++|+++|+++|+|++|.... +
T Consensus 116 ~v~~v~~~-~~-----~~----~~~---~~t~lV~le~p~NPtg~v~---di~~I~~~a~~~g~~lvVD~t~~~~~-~-- 176 (366)
T PRK07582 116 TVREAPTA-GM-----AE----AAL---AGADLVLAETPSNPGLDVC---DLAALAAAAHAAGALLVVDNTTATPL-G-- 176 (366)
T ss_pred EEEEECCC-Ch-----HH----Hhc---cCceEEEEECCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCCCCcc-c--
Confidence 88888762 11 11 222 4688999999999999765 57799999999999999999985321 1
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
.. ++ +. ...++++|+||.+ |.+|+|+||++ +++++ +++.++.........++.+.+..+...+..
T Consensus 177 -~~--p~----~~-g~Divv~S~sK~l~G~~g~~~G~v~--~~~~~----l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t 242 (366)
T PRK07582 177 -QR--PL----EL-GADLVVASDTKALTGHSDLLLGYVA--GRDPE----LMAAVERWRLLAGAIPGPFEAWLAHRSLGT 242 (366)
T ss_pred -cC--ch----hc-CCcEEEecccccccCCCCeeEEEEE--cCcHH----HHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Confidence 01 11 11 2247889999998 45679999996 43566 777777665555566777766666555543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc----c-----------cCcceeEecCCCHHHHHHHhhhc
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI----T-----------NQLGMFCFSGLTPYQVDRLAKEF 389 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~-----------~~~g~~~~~~~~~~~~~~ll~~~ 389 (435)
+....++..++...+.+.|++++.-..+.+. . ..+|++.|.=-+.+.+.+.+++.
T Consensus 243 ----------l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l 312 (366)
T PRK07582 243 ----------LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAAS 312 (366)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhC
Confidence 2334466667888888888877531111110 1 13565554411566666677766
Q ss_pred cEEEe-C--C------------------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 390 HIYMT-Q--D------------------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 390 gI~i~-p--g------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++... + | + |+|++- |+.+.+++.|.++++.
T Consensus 313 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~ 365 (366)
T PRK07582 313 RLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDA 365 (366)
T ss_pred CcceecccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 66553 1 1 1 888865 6677788888877754
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=182.40 Aligned_cols=285 Identities=15% Similarity=0.084 Sum_probs=188.1
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~ 167 (435)
.+..++|+.+++++.... .++|. ++.|+++++.++ +.+++.+||+|+++.++|..+.. ..+..|.++
T Consensus 44 ~~~~~~~~~la~~~~~~~-----~~~v~--~~~g~t~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~ 114 (376)
T TIGR01977 44 REVEETRQLLAKLFNAPS-----SAHVV--FTNNATTALNIA--LKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEI 114 (376)
T ss_pred HHHHHHHHHHHHHhCcCC-----CCeEE--EeCCHHHHHHHH--HHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEE
Confidence 566789999999884321 34677 899999999888 66678899999999999877643 345569999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. ++++.+|+++++++++ ++++++++++|+||||..++.+ +|.++|+++|+++|+|+++..... +.
T Consensus 115 ~~v~~--~~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~~~~---~i~~l~~~~~~~livD~a~~~g~~-~~-- 183 (376)
T TIGR01977 115 TIVKC--DNEGLISPERIKRAIK---TNTKLIVVSHASNVTGTILPIE---EIGELAQENGIFFILDAAQTAGVI-PI-- 183 (376)
T ss_pred EEEec--CCCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccCCHH---HHHHHHHHcCCEEEEEhhhccCcc-CC--
Confidence 98887 2356789999999997 5789999999999999999854 788999999999999999643222 11
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH----------------hhccccCCC
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI----------------ARAMYGSPP 311 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~ 311 (435)
.+ ....-++++.|++|.++.|. .+|.+++ . +.. .+..+... .+....+++
T Consensus 184 ---~~----~~~~~D~~~~s~~K~l~~p~-g~g~l~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~ 249 (376)
T TIGR01977 184 ---DM----TELAIDMLAFTGHKGLLGPQ-GTGGLYI-R-EGI----KLKPLKSGGTGSHSALIDQPSELPDRFESGTLN 249 (376)
T ss_pred ---Cc----hhcCCCEEEecccccccCCC-CceEEEE-c-CCc----CcCceecCCCccccccccccccchhhccCCCCC
Confidence 11 11245688899999875332 2566653 3 332 11111100 001122344
Q ss_pred hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-----CcceeE--ecCCCHHHHHH
Q 013839 312 VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-----QLGMFC--FSGLTPYQVDR 384 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~g~~~--~~~~~~~~~~~ 384 (435)
.....++..+++.- .+...+.++++.+++.+.+.+.|.+.+. +....+ ..+... ..+.+.+.+..
T Consensus 250 ~~~~~a~~~al~~~-----~~~g~~~~~~~~~~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 321 (376)
T TIGR01977 250 TPGIAGLNAGIKFI-----EKIGIANIAKKECMLTEKLLNGLREINK---VKIYGPADPANRVGVVSFTVEGIDSEEVAD 321 (376)
T ss_pred HHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCCCccccCCeEEEEECCCCHHHHHH
Confidence 44444444444321 1133567778888888999999886542 333222 123221 22456666655
Q ss_pred Hhhhc-cEEEeCC----------------C--cEEecc-CCCCcHHHHHHHHHH
Q 013839 385 LAKEF-HIYMTQD----------------G--RISMAG-VTTGNVNYLANAIHE 418 (435)
Q Consensus 385 ll~~~-gI~i~pg----------------g--Ris~~~-~~~e~i~~~~~~l~~ 418 (435)
.|.++ ||.+.+| + |+++.. .+++++++++++|++
T Consensus 322 ~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 322 ILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 55555 9998653 2 998754 378999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=179.16 Aligned_cols=212 Identities=16% Similarity=0.125 Sum_probs=151.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh----HHHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH----HNIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~ 169 (435)
...|++.++++... ++.+ ++.+|++|+.++ +.+++.+||+|+++.|+|... ...+...|.+++.
T Consensus 62 ~~~Le~~lA~l~g~-------~~~v---~~~sG~~Ai~~~--l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~ 129 (405)
T PRK08776 62 RDLLGEALAELEGG-------AGGV---ITATGMGAINLV--LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALIT 129 (405)
T ss_pred HHHHHHHHHHHhCC-------CceE---EEcCHHHHHHHH--HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEE
Confidence 45788888887632 2244 478889998887 777789999999999999873 3344556767766
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|+++++++++ ++++++++++|+||||.+. ++++|+++|+++|+++|+|++|......
T Consensus 130 v~~-------~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~---dl~~I~~la~~~gi~vIvD~a~a~~~~~------ 190 (405)
T PRK08776 130 ADL-------TDPRSLADALA---QSPKLVLIETPSNPLLRIT---DLRFVIEAAHKVGALTVVDNTFLSPALQ------ 190 (405)
T ss_pred ECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCccC---CHHHHHHHHHHcCCEEEEECCCcccccC------
Confidence 653 37889998887 5789999999999999985 5779999999999999999998642211
Q ss_pred HHHHHhhhcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
.++ . ....+++.|.+|.++.+ +...|+++ +.+++ +.+++.........+++.+.+.++...+
T Consensus 191 ~pl----~-~gaDivv~S~tK~l~g~~~~~~G~vv--~~~~~----l~~~l~~~~~~~g~~~s~~~a~l~~~gl------ 253 (405)
T PRK08776 191 KPL----E-FGADLVLHSTTKYINGHSDVVGGAVV--ARDAE----LHQQLVWWANALGLTGSPFDAFLTLRGL------ 253 (405)
T ss_pred Ccc----c-ccCCEEEecCceeecCCCCceEEEEE--eCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhh------
Confidence 112 1 12348899999999755 45678875 44666 6666655444444456666665555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.++...++..+++..+.+.|++++
T Consensus 254 ----~tl~~r~~~~~~na~~la~~L~~~p 278 (405)
T PRK08776 254 ----RTLDARLRVHQENADAIAALLDGHA 278 (405)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677778888888888888765
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=179.68 Aligned_cols=290 Identities=15% Similarity=0.126 Sum_probs=185.0
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHH-HHHHh---CCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAE-FQRRF---HPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~-~~~~~---~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
.++++.+++++ +.. ++++. ++.|+++++..+.. +..+. .+||+|++++++|..+...++..|++++.+
T Consensus 62 ~~~~~~la~~~-g~~-----~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v 133 (373)
T TIGR03812 62 EEVVGSLGNLL-HLP-----DAYGY--IVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYA 133 (373)
T ss_pred HHHHHHHHHHh-CCC-----CCCeE--EeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEE
Confidence 56778888777 332 23555 68899998776632 22211 467999999999999988899999999999
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc--cc
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD--KD 248 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~--~~ 248 (435)
+. ++++.+|++++++.+. +++..++...|+||||...+ +++|.++|+++++++++|++|..+...-.. ..
T Consensus 134 ~~--~~~~~~d~~~l~~~l~---~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~ 205 (373)
T TIGR03812 134 PL--DEDYTVDVKDVEDLID---DNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYN 205 (373)
T ss_pred ee--CCCCCcCHHHHHHHHh---hCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCC
Confidence 87 3457899999999987 44544444458999999865 558899999999999999998644311000 00
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccc--------cCCChhHHHHHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY--------GSPPVHGILLVAT 320 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~q~~~~~ 320 (435)
...+. + ....-..+..|.+| +++++.++|++++ . +++ +++.+.....+.. ...+.....++..
T Consensus 206 ~~~~d-~-~~~~~d~~~~s~~K-~~~~~~~~G~~~~-~-~~~----~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~ 276 (373)
T TIGR03812 206 PPPFD-F-SLPGVQSITIDPHK-MGLSPIPAGGILF-R-SKS----YLKYLSVDAPYLTVKKQATITGTRSGASAAATYA 276 (373)
T ss_pred CCCcc-c-cCCCCCEEEECccc-cCCCcCCceEEEE-e-CHH----HHhhhcccCcccCCCCCcceEeechhHHHHHHHH
Confidence 00000 0 00111234557779 6667788887752 3 666 5555532111111 1222333444444
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHHhhhccEEEeCC-C-
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQD-G- 397 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pg-g- 397 (435)
++..-. ++..++..++..++++++++.|+++|.. .+..+..+ ++.+.+ +.+.+.+.|.++||.+.++ +
T Consensus 277 ~l~~l~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~-~v~~~~~~~~~v~~~L~~~gi~v~~~~~~ 347 (373)
T TIGR03812 277 VIKYLG-----REGYRKIVAECMENTRYLVEELKKIGFE---PVIEPVLN-IVAFEVDDPEEVRKKLRDRGWYVSVTRCP 347 (373)
T ss_pred HHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHhCCCe---EEcCCCce-EEEEEeCCHHHHHHHHHHCCceeccCCCC
Confidence 443211 2456778889999999999999988741 23334444 333333 3344544446679999875 2
Q ss_pred ---cEEecc-CCCCcHHHHHHHHHH
Q 013839 398 ---RISMAG-VTTGNVNYLANAIHE 418 (435)
Q Consensus 398 ---Ris~~~-~~~e~i~~~~~~l~~ 418 (435)
|+++.. .+++++++++++|++
T Consensus 348 ~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 348 KALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhh
Confidence 998753 278999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=176.92 Aligned_cols=216 Identities=15% Similarity=0.079 Sum_probs=157.4
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCC
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQI 165 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 165 (435)
+..-..+|.+.++++..+. ..+ ++++|++|+.++ +.+++.+||+|+++.+.|...... +...|+
T Consensus 38 ~~p~~~~le~~la~l~g~~--------~a~--~~~sG~~Ai~~~--l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~ 105 (369)
T cd00614 38 GNPTVDALEKKLAALEGGE--------AAL--AFSSGMAAISTV--LLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI 105 (369)
T ss_pred CChhHHHHHHHHHHHHCCC--------CEE--EEcCHHHHHHHH--HHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence 3445678999999887322 333 689999999888 777789999999999999876543 446787
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
++..++. + |+++++++++ +++++|++.+|+||+|.+.+ +++|+++|++||+++|+|++|.......
T Consensus 106 ~~~~v~~---~----d~~~l~~~i~---~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~- 171 (369)
T cd00614 106 EVTFVDP---D----DPEALEAAIK---PETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR- 171 (369)
T ss_pred EEEEeCC---C----CHHHHHHhcC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC-
Confidence 7777754 1 5888998887 57899999999999998876 6699999999999999999986543211
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + ...++++.|+||.++.+| .+.||++ +++++ +++.++.........++...+.++...|+.
T Consensus 172 -----~~----~-~g~Divv~S~tK~l~g~~~~~gG~v~--~~~~~----l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t 235 (369)
T cd00614 172 -----PL----E-LGADIVVHSATKYIGGHSDVIAGVVV--GSGEA----LIQRLRFLRLALGTILSPFDAWLLLRGLKT 235 (369)
T ss_pred -----hh----h-hCCcEEEeccceeccCCCCceEEEEE--eCcHH----HHHHHHHHHHhhCCCCCHHHHHHHHcCCCC
Confidence 11 1 134688999999998666 6789986 32336 667677655544455666655555444432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++.+.+.+.|++++
T Consensus 236 ----------l~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 236 ----------LPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 33456677778888888998876
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=177.07 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=204.0
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhh----HHHHhhCCCCe
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNH----HNIWRDAQIPE 167 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~ 167 (435)
-+.+.|+.+++++.... .++|+ +|.|+|+++.+++..+.. +.+||+|++.+--|+.. ....+..|+++
T Consensus 67 ~~e~aRe~va~~~~a~~-----~~eIv--ft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v 139 (405)
T COG0520 67 LYEAAREAVARFLNADS-----SDEIV--FTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKV 139 (405)
T ss_pred HHHHHHHHHHHHhCCCC-----CCeEE--EeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEE
Confidence 46789999999984332 25788 999999999999532221 68999999999776543 34455679999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.+|+ + +++.++.+.++..+. ++|+++.+++.+|.||.+.+ +++|+++|+++|+++++|.+ +.....+.
T Consensus 140 ~~i~~-~-~~g~~~~~~~~~~i~---~~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaa-q~~~h~~i-- 208 (405)
T COG0520 140 RVIPL-D-DDGLLDLDALEKLIT---PKTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAA-QAAGHLPI-- 208 (405)
T ss_pred EEEec-C-CCCCcCHHHHHHhcC---CCceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECc-cccCccCC--
Confidence 99998 3 567899999999887 88999999999999999876 56999999999999999999 33333222
Q ss_pred cHHHHHHhhhcCCeEEEEecccc-cccccCCcccEEEEEecChhHHHHHHHHHHHH----------------------hh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAK-SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI----------------------AR 304 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK-~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----------------------~~ 304 (435)
++ ..-+.+++..|..| .+|..| +|.+.+ .++ +.+.+... .+
T Consensus 209 ---dv----~~l~~Df~afsgHKwl~gP~G--iGvLy~---r~~----~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~r 272 (405)
T COG0520 209 ---DV----QELGCDFLAFSGHKWLLGPTG--IGVLYV---RKE----LLEELEPFLGGGGMIEYVSRDEGVTLAELPLR 272 (405)
T ss_pred ---Cc----hhcCCCEEEEcccccccCCCc--eEEEEE---chH----HHhhcCCcccCCCceeeecccccccccCcchh
Confidence 11 22367899999999 777557 577754 777 55544210 01
Q ss_pred ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc----CcceeEec--CCC
Q 013839 305 AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN----QLGMFCFS--GLT 378 (435)
Q Consensus 305 ~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~--~~~ 378 (435)
.-...++.....++.++++-- .....+++.++.++..+++.+.|++++. +.++.+ ..+.+.|. +.+
T Consensus 273 fe~gTpn~~~~i~l~aAl~~~-----~~ig~~~i~~~e~~L~~~~~~~L~~~~~---v~i~g~~~~~r~~~vsF~v~~~~ 344 (405)
T COG0520 273 FEAGTPNIAGAIGLAAALDYL-----LEIGMEAIEAHERELTEYLLEGLSELPG---VEIYGPPDADRGGIVSFNVKGIH 344 (405)
T ss_pred hccCCchHHHHHhHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCcccCceEEEEEeCCCC
Confidence 111223333333444444321 1233567777888888899999988863 455443 35555553 667
Q ss_pred HHHHHHHhhhccEEEeCCC----------------cEEeccC-CCCcHHHHHHHHHHHHH
Q 013839 379 PYQVDRLAKEFHIYMTQDG----------------RISMAGV-TTGNVNYLANAIHEVTR 421 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pgg----------------Ris~~~~-~~e~i~~~~~~l~~~l~ 421 (435)
...+...|.++||.++.|. |+|++.. |.||+++++++|+++.+
T Consensus 345 ~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 345 PHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 7777777788999999771 8987533 88999999999998764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=176.02 Aligned_cols=216 Identities=14% Similarity=0.103 Sum_probs=150.0
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCC
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQI 165 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~ 165 (435)
+.....+|+++++++..... .+ .+.+|++|+.++ +.+++.+||+|++++|+|......+. ..|+
T Consensus 59 ~~p~~~~Le~~lA~~~g~~~-------~i---~~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi 126 (388)
T PRK07811 59 GNPTRTALEEQLAALEGGAY-------GR---AFSSGMAATDCL--LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV 126 (388)
T ss_pred CCccHHHHHHHHHHHhCCCc-------eE---EeCCHHHHHHHH--HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe
Confidence 44567899999999984332 23 467889999888 77778999999999999986544333 2466
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
++..++. .|++++++++. +++++|++++|+||||.. .++++|+++|+++|+++|+|++|.......
T Consensus 127 ~~~~~d~-------~d~e~l~~~i~---~~tklV~ie~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~~- 192 (388)
T PRK07811 127 EYTPVDL-------SDLDAVRAAIT---PRTKLIWVETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQQ- 192 (388)
T ss_pred EEEEeCC-------CCHHHHHHhcC---cCCeEEEEECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence 6655543 48899999987 678999999999999875 567799999999999999999986543221
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++. ....+++.|++|.++.+| .+.||++ +++++ +.+.++..........+...+..+...|+
T Consensus 193 -----p~~-----~gaDivv~S~sK~l~g~~~~~gG~vv--~~~~~----l~~~~~~~~~~~g~~~s~~~a~l~~~~L~- 255 (388)
T PRK07811 193 -----PLA-----LGADVVVHSTTKYIGGHSDVVGGALV--TNDEE----LDEAFAFLQNGAGAVPGPFDAYLTLRGLK- 255 (388)
T ss_pred -----chh-----hCCcEEEecCceeecCCCCcEEEEEE--ECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhccC-
Confidence 111 123589999999998655 4568886 43566 65655554433333344443333333332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++...+.+.|++++
T Consensus 256 ---------tl~~R~~~~~~na~~la~~L~~~p 279 (388)
T PRK07811 256 ---------TLAVRMDRHSENAEAVAEFLAGHP 279 (388)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 234455566777788888888764
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-20 Score=179.19 Aligned_cols=280 Identities=14% Similarity=0.069 Sum_probs=175.2
Q ss_pred CeeeEecCCchhHHHHHHHHHHHh--------CCCCEEEEcCCCChhhHHHH-hhCCCCee---eeeecC--CCCCCcCh
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRF--------HPESHIYFPDPTWSNHHNIW-RDAQIPER---TYHYYD--PDSKSLDF 182 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~---~v~~~~--~~~~~~d~ 182 (435)
.+. ++++|++|++.+..+.... ..+++|++.+-+|.+..... ...+.... ..+... ..-...|+
T Consensus 90 ~~~--~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 167 (400)
T PTZ00125 90 KVL--PMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDV 167 (400)
T ss_pred EEE--EeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCH
Confidence 555 8999999999986433211 13478888888887654332 22221100 001000 00011388
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+++++.+. .+++++|++.+++||||..++ .+.+++|.++|++||+++|+||+|.+++..+ ...... ..+....
T Consensus 168 ~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G---~~~~~~-~~~~~pd 241 (400)
T PTZ00125 168 EALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG---KLLAHD-HEGVKPD 241 (400)
T ss_pred HHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhHHH-hcCCCCC
Confidence 99999885 246889999999999999986 4569999999999999999999998776543 111211 1122122
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
++ ++||.++.+++|+||+++ +++ +++.+.......+.+.+.+.+.++.+.|+.-. + ....++
T Consensus 242 ~~---~~sK~l~~g~~~ig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~------~--~~~~~~ 303 (400)
T PTZ00125 242 IV---LLGKALSGGLYPISAVLA---NDD----VMLVIKPGEHGSTYGGNPLACAVAVEALEVLK------E--EKLAEN 303 (400)
T ss_pred EE---EEcccccCCCcCcEEEEE---cHH----HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH------h--cCHHHH
Confidence 22 478999854469999974 777 77776654444456677788887766664211 1 123344
Q ss_pred HHHHHHHHHHHHHhh-CCCCCccccccCcceeEecCC------CH-HHHHHHhhhccEEEeCCC----cEEec-cCCCCc
Q 013839 342 IQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL------TP-YQVDRLAKEFHIYMTQDG----RISMA-GVTTGN 408 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~------~~-~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~ 408 (435)
.+++.+.+.+.|+++ .....+....+ .|.+.++.+ +. ++...+ .++||.+.|++ ||+.. ..++++
T Consensus 304 ~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~lRi~~~~~~~~~~ 381 (400)
T PTZ00125 304 AQRLGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSDGVNAWDLCLKL-KENGLLAKPTHDNIIRFAPPLVITKEQ 381 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCcchHHHHHHHHH-HHCCeEEeecCCCEEEEECCccCCHHH
Confidence 555556666666554 11111122334 455555533 22 344555 46899999875 89853 348899
Q ss_pred HHHHHHHHHHHHHhhh
Q 013839 409 VNYLANAIHEVTRSEQ 424 (435)
Q Consensus 409 i~~~~~~l~~~l~~~~ 424 (435)
+++++++|.++++++.
T Consensus 382 i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 382 LDQALEIIKKVLKSFD 397 (400)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=173.99 Aligned_cols=299 Identities=17% Similarity=0.115 Sum_probs=208.9
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHH--HHHhC--CCCEEEEcCCCChhhHHHHhhC---CC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF--QRRFH--PESHIYFPDPTWSNHHNIWRDA---QI 165 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~--~~~~~--~gd~Vlv~~p~y~~~~~~~~~~---g~ 165 (435)
.+.+.|+.||+.+... +++|+ +|+|||++.+++..- .+.-. .|.++++..--++...+.++.. |.
T Consensus 45 ~ve~AR~~iA~llga~------~~eIi--FTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~ 116 (386)
T COG1104 45 AVEEAREQIAKLLGAD------PEEII--FTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGF 116 (386)
T ss_pred HHHHHHHHHHHHhCCC------CCeEE--EecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCC
Confidence 4577888899988433 56888 999999999998422 22222 4789999988777776666544 99
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
++.++|. ..++.+|+++|+++++ ++|.+|.+...||.||++.+.+ +|.++|+++++++.+|.+ +.++--+.
T Consensus 117 ~Vtyl~V--~~~G~v~~e~L~~al~---~~T~LVSim~aNnE~G~IQpI~---ei~~i~k~~~i~fHvDAv-Qa~Gkipi 187 (386)
T COG1104 117 EVTYLPV--DSNGLVDLEQLEEALR---PDTILVSIMHANNETGTIQPIA---EIGEICKERGILFHVDAV-QAVGKIPI 187 (386)
T ss_pred eEEEeCC--CCCCeEcHHHHHHhcC---CCceEEEEEecccCeeecccHH---HHHHHHHHcCCeEEEehh-hhcCceec
Confidence 9999988 3468999999999998 7899999999999999987755 999999999999999999 55543221
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
.+ ....-++...|-.|..|..| +|.+.+ .+.-.+..++..--+-........+.++..++..+++..
T Consensus 188 -----~~----~~~~vD~ls~SaHK~~GpkG--iGaLyv--~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a 254 (386)
T COG1104 188 -----DL----EELGVDLLSFSAHKFGGPKG--IGALYV--RPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA 254 (386)
T ss_pred -----cc----cccCcceEEeehhhccCCCc--eEEEEE--CCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 11 11124667778889999888 577753 122211111111111111112334444445555565543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CccccccCcceeEecCCCHHHHHHHhhhccEEEeCCC----
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL----NWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDG---- 397 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg---- 397 (435)
. +.++....++...|+.|.+.|.+..... .-...-|..-.+.+.++..+.+...|+.+||++..|.
T Consensus 255 ~------~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS 328 (386)
T COG1104 255 V------EELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSS 328 (386)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccC
Confidence 2 5667777889999999999998752110 0012233445566778898888777888999998761
Q ss_pred -----------------------cEEeccC-CCCcHHHHHHHHHHHHHhhhhhh
Q 013839 398 -----------------------RISMAGV-TTGNVNYLANAIHEVTRSEQETA 427 (435)
Q Consensus 398 -----------------------Ris~~~~-~~e~i~~~~~~l~~~l~~~~~~~ 427 (435)
||||+.. ++++++++++.|.+++++++..+
T Consensus 329 ~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~ 382 (386)
T COG1104 329 GSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELS 382 (386)
T ss_pred CCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999765 78899999999999999887544
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=176.66 Aligned_cols=212 Identities=15% Similarity=0.078 Sum_probs=149.4
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~ 168 (435)
....|++.++++.... +.+ .+++|+.|+.++ +.+++.+||+|+++.|.|.... ..+...|++++
T Consensus 66 ~~~~le~~lA~l~g~~-------~~i---~~~sG~~Al~~~--l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~ 133 (403)
T PRK07503 66 TLALLEQRMASLEGGE-------AAV---ALASGMGAITAT--LWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVR 133 (403)
T ss_pred hHHHHHHHHHHHhCCC-------cEE---EEcCHHHHHHHH--HHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEE
Confidence 4678999999887432 122 588999998888 6667899999999999986543 34456788888
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. .|+++++++++ +++++|++++|+||||...+ +++|.++|+++|+++|+|++|.......
T Consensus 134 ~vd~-------~d~~~l~~~i~---~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~~---- 196 (403)
T PRK07503 134 HVDL-------TDPAALKAAIS---DKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQR---- 196 (403)
T ss_pred EeCC-------CCHHHHHHhcC---ccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 7765 26889999887 67899999999999998875 5689999999999999999986543221
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCCh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
++ . ...++++.|+||.++.+| .|.||++ . +++ ++++++.. .......++.+.+..+..-|+
T Consensus 197 --~l----~-~g~Di~v~S~tK~l~g~gd~~gG~v~--~-~~~----l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-- 260 (403)
T PRK07503 197 --PL----E-LGADLVVHSATKYLGGHGDITAGLVV--G-GKA----LADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-- 260 (403)
T ss_pred --ch----h-hCCCEEEccccccccCCCceeEEEEE--c-CHH----HHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc--
Confidence 12 1 123588999999999766 5677775 3 777 66666532 223334555555544433332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++...+.+.|++++
T Consensus 261 --------tl~~r~~~~~~na~~~a~~L~~~p 284 (403)
T PRK07503 261 --------TLALRMDRHCASAQAVAEWLARHP 284 (403)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444455566777777777664
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=176.17 Aligned_cols=213 Identities=14% Similarity=0.074 Sum_probs=149.1
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~ 168 (435)
....|++.++++.... ..+ ++++|+.|+.++ +.+++.+||+|+++.|.|.... ..+...|+++.
T Consensus 60 ~~~~le~~lA~l~g~~--------~av--~~~sG~~Ai~~~--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~ 127 (391)
T TIGR01328 60 TVSNLEGRIAFLEGTE--------AAV--ATSSGMGAIAAT--LLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVD 127 (391)
T ss_pred hHHHHHHHHHHHhCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEE
Confidence 3467999999998432 223 688999998877 7777899999999999886543 33456788887
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. + |++++++++. +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 128 ~vd~---~----d~e~l~~~i~---~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~---- 190 (391)
T TIGR01328 128 FINM---A----IPEEVKAHIK---DNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN---- 190 (391)
T ss_pred EECC---C----CHHHHHHhhc---cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC----
Confidence 7765 1 7889999887 67899999999999998876 5689999999999999999986543221
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc-c-ccCCChhHHHHHHHHhCChh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA-M-YGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~q~~~~~~l~~~~ 326 (435)
++ +. ...+++.|+||.++.+|.++|++++ + +++ +++.++..... . ...++....+.+...|+
T Consensus 191 --~~----~~-g~Divv~S~sK~lgg~g~~~gG~v~-~-~~~----li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~--- 254 (391)
T TIGR01328 191 --PV----AL-GVDVVVHSATKYIGGHGDVVAGLIC-G-KAE----LLQQIRMVGIKDMTGSVISPFDAWLILRGLK--- 254 (391)
T ss_pred --ch----hc-CCCEEEccccccccCCCCceEEEEE-c-CHH----HHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC---
Confidence 11 11 2348889999999989988654432 3 777 66666653322 1 22344443333333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++.+.+.+.|++++
T Consensus 255 -------tl~~r~~~~~~na~~la~~L~~~p 278 (391)
T TIGR01328 255 -------TLNIRMKRHSENAMKVAEYLKSHP 278 (391)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 234445667777778888887764
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=175.50 Aligned_cols=355 Identities=14% Similarity=0.024 Sum_probs=195.7
Q ss_pred HhhhhhhhccccccccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C---
Q 013839 8 RAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S--- 83 (435)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--- 83 (435)
|+.+.|++.-.-+....+. +.......+ + ..++...+|++...+... ...+++++++.+++.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~~~~G~~~------~-d~~g~~~ld~~s~~~lgl---~~~p~v~~A~~~~l~~~g~~~ 80 (402)
T PRK07505 13 NRAEKFWDAAYDEGLNGLT--VGEREGILI------T-LADGHTFVNFVSCSYLGL---DTHPAIIEGAVDALKRTGSLH 80 (402)
T ss_pred HhhHHHHHHHHhcccccce--eeccCCccE------E-ecCCceEEEeecCCccCC---CCCHHHHHHHHHHHHHhCCCC
Confidence 7777899876444333211 111111111 1 235678999987665222 2233334444444431 1
Q ss_pred CCCCC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--HhCCCC-EEEEcCCCChhhHH
Q 013839 84 EFLES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RFHPES-HIYFPDPTWSNHHN 158 (435)
Q Consensus 84 ~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~~~gd-~Vlv~~p~y~~~~~ 158 (435)
..... .......++++.+++++. . . .+ ++++|++|...+..+.. .+.+|+ .|++.+..|.+-..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~la~~~~-~--~-----~~---~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~ 149 (402)
T PRK07505 81 LSSSRTRVRSQILKDLEEALSELFG-A--S-----VL---TFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLN 149 (402)
T ss_pred CCccchhhhhHHHHHHHHHHHHHhC-C--C-----EE---EECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHH
Confidence 01100 112334677777777762 2 1 23 46677778876643332 222343 36677765543211
Q ss_pred ---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeec
Q 013839 159 ---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDM 235 (435)
Q Consensus 159 ---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~De 235 (435)
.....+.+++.+|. .|++.+++++. ++++++++++|+||||.+.+ +++|.++|++|++++|+||
T Consensus 150 ~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~---~~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DE 216 (402)
T PRK07505 150 ILKGICADETEVETIDH-------NDLDALEDICK---TNKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDD 216 (402)
T ss_pred hhhhhhhcCCeEEEeCC-------CCHHHHHHHHh---cCCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEEC
Confidence 11223445565553 37889999886 45678888999999999988 5688899999999999999
Q ss_pred cCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcccc--CCCh
Q 013839 236 AYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG--SPPV 312 (435)
Q Consensus 236 ay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ 312 (435)
+|....++... .......+.. ..+++++++|+||.++.+| ||++ +++++ +++.+.+.....+. +++.
T Consensus 217 a~~~~~~g~~g-~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~--~~~~~----~~~~~~~~~~~~t~~~~~~~ 286 (402)
T PRK07505 217 AHGLSIYGKNG-EGYVRSELDYRLNERTIIAASLGKAFGASG---GVIM--LGDAE----QIELILRYAGPLAFSQSLNV 286 (402)
T ss_pred cccccCcCCCC-CchHHHHcCCCCCCCeEEEEechhhhhccC---eEEE--eCCHH----HHHHHHHhCCCceeCCCCCH
Confidence 98544333211 1122222322 4678999999999999776 8874 33667 77777664433222 3444
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec--CC--CHHHH-HHHhh
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--GL--TPYQV-DRLAK 387 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~--~~~~~-~~ll~ 387 (435)
+++.++.+.+.... ++.+.+.+++++++.+.+.+.+... ....+.++.++ +- ..+.+ +.+ .
T Consensus 287 ~a~aa~~a~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~--------~~g~~~~i~~~~~~~~~~~~~~~~~l-~ 352 (402)
T PRK07505 287 AALGAILASAEIHL-----SEELDQLQQKLQNNIALFDSLIPTE--------QSGSFLPIRLIYIGDEDTAIKAAKQL-L 352 (402)
T ss_pred HHHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHHHHHHHhc--------CCCCCCCEEEEEeCCHHHHHHHHHHH-H
Confidence 55555555543100 0222333444444444332222110 01122222222 21 12334 555 5
Q ss_pred hccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 388 EFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 388 ~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
++||.+.+. + ||++.. .+++++++++++|.+++++
T Consensus 353 ~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 353 DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 689999763 2 888752 3889999999999988754
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-19 Score=171.71 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=154.9
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~ 167 (435)
.....|.+++|++..+ ++++ +++||++|+.++ +.+++.+||+|+++.|+|.+....+ ...|+++
T Consensus 53 pt~~~Le~~lA~leg~--------e~iv--vt~gg~~Ai~~~--l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v 120 (388)
T PRK08861 53 PNRGLLEQTLSELESG--------KGAV--VTNCGTSALNLW--VSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKV 120 (388)
T ss_pred chHHHHHHHHHHHhCC--------CeEE--EECCHHHHHHHH--HHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEE
Confidence 3467899999999742 2566 899999999988 7777899999999999998654433 2345566
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. .|++++++++. +++++|++++|+||||.+++.+ +|.++|+++|+++|+|++|....+..
T Consensus 121 ~~vd~-------~d~e~l~~~i~---~~tklV~lesP~NPtG~v~dl~---~I~~la~~~gi~vIvDea~~~~~~~~--- 184 (388)
T PRK08861 121 QFVDQ-------SDAAALDAALA---KKPKLILLETPSNPLVRVVDIA---ELCQKAKAVGALVAVDNTFLTPVLQK--- 184 (388)
T ss_pred EEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCccccccCC---
Confidence 65532 47899998887 6789999999999999999855 88889999999999999986543221
Q ss_pred cHHHHHHhhhcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
++ +. .-.+++.|++|.++-+ +...|+++ +.+++ +.++++.........++++..+.+..-|+.
T Consensus 185 ---pl----~~-GaDivv~S~tK~l~G~~d~~gG~i~--~~~~~----~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-- 248 (388)
T PRK08861 185 ---PL----EL-GADFVIHSTTKYINGHSDVIGGVLI--TKTKE----HAEELAWWGNCIGATGTPFDSYMTLRGIRT-- 248 (388)
T ss_pred ---Cc----cc-CCCEEEeecceeccCCCcceeEEEE--ecHHH----HHHHHHHHHhccCCCCChHHHHHHHhcCCC--
Confidence 11 11 2458899999998643 45678875 43455 666666555454556666665655555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++...+.+.|+.++
T Consensus 249 --------l~lR~~~~~~~a~~~a~~L~~~p 271 (388)
T PRK08861 249 --------LGARMRVHEESAQQILAYLQTQS 271 (388)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555677777788888888775
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=174.39 Aligned_cols=336 Identities=14% Similarity=0.108 Sum_probs=200.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.-...-| .-.+++++++.+++... .+ +.. ....+....+++.+..... .+.+. ++++|
T Consensus 12 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~-~~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~--f~~sG 81 (382)
T PLN00144 12 VEGKEYLDMAAGIAVNALG-HGDPDWVKAVAEQAGTL-AH-VSN-VYHTIPQVELAKRLVASSF----ADRVF--FCNSG 81 (382)
T ss_pred CCCCEEEECCcCHHhccCC-CCCHHHHHHHHHHHHhc-CC-ccc-cccCHHHHHHHHHHHhcCC----CCeEE--EeCCc
Confidence 3567899987774211111 12234444444554421 11 111 1112233445555432211 24677 89999
Q ss_pred hhHHHHHHHHHHHhCC-------------CCEEEEcCCCChhhHHHHhhCCCCe----eeeeecCCCC---CCcChHhHH
Q 013839 127 TGACRLFAEFQRRFHP-------------ESHIYFPDPTWSNHHNIWRDAQIPE----RTYHYYDPDS---KSLDFAALM 186 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~----~~v~~~~~~~---~~~d~e~l~ 186 (435)
++|++.+..+...... ..+|+....+|.+............ ...|.. +.. .-.|++.++
T Consensus 82 seA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~ 160 (382)
T PLN00144 82 TEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLM-PGVTFVEYGNLEAAR 160 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCC-CCeEEeCCCCHHHHH
Confidence 9999999755543321 2578888888877654333221110 001100 000 012788898
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
+.+.. .+.+++++...+||.|+.. +.+.+++|.++|++||+++|+||+|.+|...+ ..++.....-.++ +
T Consensus 161 ~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g---~~~~~~~~~~~PD----i 231 (382)
T PLN00144 161 KLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG---YLWAHEAYGVEPD----I 231 (382)
T ss_pred HhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hHhhhhhcCCCCC----E
Confidence 88752 3566666665699955433 34459999999999999999999999887654 1222212211223 7
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHh---CChhhHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL---SDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l---~~~~l~~~~~~~~~~~~~~~ 342 (435)
.+|||.++ +|+|+||+++ +++ +.+.+.......+.+.+++++.++.+.| .+++ +.++++...+++
T Consensus 232 ~t~sK~l~-~G~pig~v~~---~~~----~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~----~~~~~~~~g~~l 299 (382)
T PLN00144 232 MTLAKPLA-GGLPIGAVLV---TEK----VASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG----FLASVAKKGEYL 299 (382)
T ss_pred EEeccccc-CCcceEEEEE---cHH----HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhch----HHHHHHHHHHHH
Confidence 78999998 8999999975 777 7776654334556678888888887444 3332 233444444444
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---HHHHHHHhhhccEEEeCCC-----cEEecc-CCCCcHHHHH
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQDG-----RISMAG-VTTGNVNYLA 413 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pgg-----Ris~~~-~~~e~i~~~~ 413 (435)
++.+.+.+.+.+. +.... ..|++.|+.++ ..++..+ .++||.+.|++ |++++. .+++++++++
T Consensus 300 ---~~~l~~~~~~~~~---~~~vr-g~G~~~~l~l~~~~~~~~~~~-~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~ 371 (382)
T PLN00144 300 ---RELLRRKLGGNPH---VKEVR-GVGLLVGIQLDVPAGPLVDAC-RDSGLLVLTAGKGDVVRLVPPLVISEAELEQAV 371 (382)
T ss_pred ---HHHHHHHHhhCCC---ceeee-cCceEEEEEecCccHHHHHHH-HHCCeEEeecCCCCEEEEeCCCccCHHHHHHHH
Confidence 2334444444432 11222 37889998662 3344554 56999999864 898866 6889999999
Q ss_pred HHHHHHHHh
Q 013839 414 NAIHEVTRS 422 (435)
Q Consensus 414 ~~l~~~l~~ 422 (435)
++|.+++.+
T Consensus 372 ~~l~~~l~~ 380 (382)
T PLN00144 372 EILADCLPA 380 (382)
T ss_pred HHHHHHHHh
Confidence 999998864
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=176.27 Aligned_cols=329 Identities=12% Similarity=0.081 Sum_probs=202.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++..||+..|...+.-|. ..+++++++.+++.... ...|. ..-..+|.+.+++.. + .+.+. ++++
T Consensus 33 dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~la~~L~~~~-~-------~~~~~--f~~S 100 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGNGYT-NEPVLRLAKKLVDAT-F-------ADKVF--FCNS 100 (397)
T ss_pred CCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcccccCccC-CHHHHHHHHHHHhhC-C-------CCEEE--EeCC
Confidence 5688999988732122332 23444444445544211 11121 112234555555543 1 23566 8999
Q ss_pred chhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHH-HhhCCCC------------eeeeeecCCCCCCcChHhHH
Q 013839 126 GTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNI-WRDAQIP------------ERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~-~~~~g~~------------~~~v~~~~~~~~~~d~e~l~ 186 (435)
|++|++.+..+..... +| ++|+..+-+|.+.... +...+.. +..++ ..|++.++
T Consensus 101 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~ 173 (397)
T TIGR03246 101 GAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAP-------YNDLAAAK 173 (397)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeC-------CCCHHHHH
Confidence 9999999975554331 23 6788888888766432 2322211 11111 13789999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
+.+. +++++|+++.++++.|... +.+.+++|.++|++||+++|.||+|.+++..+. .+....+ +... + +
T Consensus 174 ~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~---~~a~~~~-gv~p-D--i 243 (397)
T TIGR03246 174 ALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE---LYAYMHY-GVTP-D--I 243 (397)
T ss_pred HHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc---chhhhhc-CCCC-C--E
Confidence 9886 5688888887677777654 889999999999999999999999988865431 1222122 1111 2 2
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
.++||.+| .|+++||+++ +++ +++.+.......+++.+++++.++.+.|+.. + .....++++++
T Consensus 244 ~t~~K~lg-gG~pigav~~---~~~----i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~-------~-~~~l~~~~~~~ 307 (397)
T TIGR03246 244 LTSAKALG-GGFPIGAMLT---TTE----IAAHLKVGTHGTTYGGNPLACAVAGKVLDLV-------N-TPELLAGVKQR 307 (397)
T ss_pred EEeehhhh-CCcceeEEEE---cHH----HHHhccCCCcCCCCCCCHHHHHHHHHHHHHH-------h-hccHHHHHHHH
Confidence 37899998 8999999974 777 7777754333445566777777777777532 1 13466778888
Q ss_pred HHHHHHHHHhhCCCC-CccccccCcceeEec--C----CCHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHH
Q 013839 346 RTTLRQNLEKLGSSL-NWEHITNQLGMFCFS--G----LTPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLA 413 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~--~----~~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~ 413 (435)
.+++.+.|++++... .+....+.+.++.+. . ...+++..+ .++||.+.+.| |++.+ ..+++++++++
T Consensus 308 ~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l-~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~ 386 (397)
T TIGR03246 308 HDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAA-AEEGVIALIAGPNVVRFAPSLVISDDDIDEGL 386 (397)
T ss_pred HHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHH-HHCCeEEeecCCCEEEEeCCCCCCHHHHHHHH
Confidence 888888887764211 122233344333321 1 112334544 56899998754 77532 24899999999
Q ss_pred HHHHHHHHh
Q 013839 414 NAIHEVTRS 422 (435)
Q Consensus 414 ~~l~~~l~~ 422 (435)
++|.+++.+
T Consensus 387 ~~l~~~l~~ 395 (397)
T TIGR03246 387 ARFERAIEQ 395 (397)
T ss_pred HHHHHHHHH
Confidence 999998864
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=181.11 Aligned_cols=286 Identities=13% Similarity=0.103 Sum_probs=190.3
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCChhhHHHH---hhCCCCe
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RFHPESHIYFPDPTWSNHHNIW---RDAQIPE 167 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~ 167 (435)
...++|+.+++++ +.+ ++++. ++.|+++++.+++..+. ...+||+|++..+.|..+...+ +..|+++
T Consensus 48 ~~~~~r~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v 119 (402)
T TIGR02006 48 AVENARNQVAELI-GAD-----SREIV--FTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEV 119 (402)
T ss_pred HHHHHHHHHHHHh-CCC-----CCeEE--EeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEE
Confidence 4567788899887 332 55787 89999999988742221 2368999999999998765443 4568899
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. .+++.+|++.+++.+. ++++++++++++||||...+ +++|.++|+++|+++++|+++.. ...+.
T Consensus 120 ~~v~~--~~~~~~d~~~l~~~l~---~~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~-g~~~~-- 188 (402)
T TIGR02006 120 TYLPP--KSNGLIDLEELKAAIR---DDTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSV-GKIPI-- 188 (402)
T ss_pred EEEcc--CCCCcCCHHHHHHhcC---CCCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhc-CCccc--
Confidence 99887 3456799999999987 56899999999999999876 55999999999999999999642 21111
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHH
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVAT 320 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~ 320 (435)
.+ ....-++++.|..|.+|.+| +|++++ .++ ....+.... +....+++.....++..
T Consensus 189 ---~~----~~~~~D~~~~s~~K~~gp~G--~G~l~~---~~~----~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~ 252 (402)
T TIGR02006 189 ---NV----NELKVDLMSISGHKIYGPKG--IGALYV---RRK----PRVRLEALIHGGGHERGMRSGTLPTHQIVGMGE 252 (402)
T ss_pred ---Cc----cccCCCEEEEehhhhcCCCc--eEEEEE---ccC----CCCCCCceecCCCccCCccCCCccHHHHHHHHH
Confidence 11 11234678888889888556 677763 333 111111110 11123455555555555
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc------cCcceeEecCCCHHHHHHHhhhccEEEe
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT------NQLGMFCFSGLTPYQVDRLAKEFHIYMT 394 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~ll~~~gI~i~ 394 (435)
+++.. .+..+...+++++.++.+.+.|++++. +.... +....+.+.+.+.+.+...+ .+|.+.
T Consensus 253 al~~~------~~~~~~~~~~~~~l~~~l~~~l~~~~~---v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~ 321 (402)
T TIGR02006 253 AFRIA------KEEMAQDTAHVLALRDRLLNGIKSIEE---VYLNGDLEHRVPGNLNVSFNYVEGESLIMAL--KDLAVS 321 (402)
T ss_pred HHHHH------HHhHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCeEEEEEeCcCHHHHHHhc--CCEEEe
Confidence 55422 234666778888899999999987642 22221 11113445556655554333 366554
Q ss_pred CC-------------------------C--cEEeccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 395 QD-------------------------G--RISMAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 395 pg-------------------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
.| | |+|+... |++|++++++.|+++++.+.
T Consensus 322 ~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 322 SGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred chhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 32 2 9998643 78999999999999887654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=173.10 Aligned_cols=212 Identities=11% Similarity=0.106 Sum_probs=152.3
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh----HHHHhhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH----HNIWRDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~ 168 (435)
-..+|++.++++. +.. .+. ++++|+.|+.++ +.+++.+||+|+++.+.|... ...+...|++++
T Consensus 55 ~~~~le~~la~l~-g~~-------~~~--~~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~ 122 (380)
T TIGR01325 55 TVAAFEERIAALE-GAE-------RAV--ATATGMSAIQAA--LMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVS 122 (380)
T ss_pred hHHHHHHHHHHHh-CCC-------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEE
Confidence 3678999999887 331 334 689999999888 677789999999999888653 335567888888
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. .|++++++++. +++++|++++|+||+|...+ +++|.++|+++|+++|+|++|.......
T Consensus 123 ~v~~-------~d~~~l~~~i~---~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~---- 185 (380)
T TIGR01325 123 FVDP-------TDLNAWEAAVK---PNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ---- 185 (380)
T ss_pred EECC-------CCHHHHHHhcC---CCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 7764 16888988886 57899999999999998865 6689999999999999999986543221
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
++ +. ..++++.|+||.++.+|.++ |+++ + +++ +++.+++.........+..... .++..-
T Consensus 186 --pl----~~-g~Divv~S~sK~l~g~g~~~gG~vv--~-~~~----~~~~l~~~~~~~g~~~~p~~a~---~~l~~l-- 246 (380)
T TIGR01325 186 --PL----KL-GADVVVYSATKHIDGQGRVMGGVIA--G-SEE----LMAEVAVYLRHTGPAMSPFNAW---VLLKGL-- 246 (380)
T ss_pred --ch----hh-CCCEEEeeccceecCCCCeEEEEEE--e-CHH----HHHHHHHHHHhhCCCCCHHHHH---HHHhcc--
Confidence 11 11 23688889999998888887 5553 3 777 6666665544433344444333 233322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..+++..+.+.|++++
T Consensus 247 -----~tl~~r~~~~~~~a~~la~~L~~~p 271 (380)
T TIGR01325 247 -----ETLSLRMQKQFDSALAIAEWLQAQP 271 (380)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3345566777778888888888775
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=171.83 Aligned_cols=213 Identities=14% Similarity=0.084 Sum_probs=149.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh---hCCCCee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR---DAQIPER 168 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~ 168 (435)
....+|++.+++++... +++ ++++|+.|+.++ +.+++.+||+|+++.|+|..+...++ ..|+++.
T Consensus 53 p~~~~lE~~lA~l~g~~--------~~l--~~~sG~~Ai~~~--l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~ 120 (385)
T PRK08574 53 PTLRPLEEALAKLEGGV--------DAL--AFNSGMAAISTL--FFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVV 120 (385)
T ss_pred ccHHHHHHHHHHHhCCC--------cEE--EeCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEE
Confidence 35678999999998432 344 689999998888 77788999999999999998876664 3455554
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCC-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
.+. +|++++++++. + +++++++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 121 ~~~--------~d~~~l~~~i~---~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~---- 182 (385)
T PRK08574 121 LAY--------PSTEDIIEAIK---EGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY---- 182 (385)
T ss_pred EEC--------CCHHHHHHhcC---ccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----
Confidence 431 36788999887 4 7899999999999999887 458999999999999999997432211
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
. ++ . .+.++++.|++|.++.+|..+ |+++ +.+++ +.++++.........++.+..+.+...|+
T Consensus 183 ~--~l----~-~GaDivv~S~sK~l~g~~d~~gG~vi--~~~~~----~~~~~~~~~~~~g~~~~p~~a~l~l~~l~--- 246 (385)
T PRK08574 183 R--PL----R-HGADFVVHSLTKYIAGHNDVVGGVAV--AWSGE----FLEELWEWRRRLGTIMQPFEAYLVLRGLK--- 246 (385)
T ss_pred C--hh----h-hCCcEEEeeCceeecCCCCceeEEEE--ECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHcccC---
Confidence 1 11 1 134789999999998677665 5554 44676 66666655443334455443333333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++...+.+.|+.++
T Consensus 247 -------tL~~R~~~~~~na~~la~~L~~~p 270 (385)
T PRK08574 247 -------TLEVRFERQCRNAMAIAEFLSEHP 270 (385)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 234445556667777778887664
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-19 Score=173.48 Aligned_cols=337 Identities=10% Similarity=0.051 Sum_probs=199.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..||+..|.-...-|. ..+.+++++.+++.......+. ...-..++-+.+++...... .+++. +++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~~~--f~~ 108 (421)
T PRK09792 37 VEGNEYIDFAAGIAVLNTGH-RHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSG-----QAKTA--FFT 108 (421)
T ss_pred CCCCEEEEccCchhhhcCCC-CCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCC-----CceEE--EeC
Confidence 46788999877742111121 2333444444444322111111 11111234444444321111 13566 889
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCC-------------CeeeeeecCCCCCCc----ChHhHH
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQI-------------PERTYHYYDPDSKSL----DFAALM 186 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~----d~e~l~ 186 (435)
+|++|++.+..+........+|+....+|.+....... .|. .+..+|..+.. .++ +++.++
T Consensus 109 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~ 187 (421)
T PRK09792 109 TGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIE 187 (421)
T ss_pred ChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHH
Confidence 99999999976665554446889888888776432211 111 12222221111 122 346777
Q ss_pred HHhhc--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 187 DDIKN--APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 187 ~~i~~--~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+.+.+ .+++.+++++...++|+|..+ +++.+++|.++|++||+++|+||++.+|...+ ..+....+...++
T Consensus 188 ~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~~~~pD--- 261 (421)
T PRK09792 188 RLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG---KLFAMDHYADKPD--- 261 (421)
T ss_pred HHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHhcCCCCc---
Confidence 77763 134577888877799999876 89999999999999999999999999987754 2344444422233
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+.++||.++ +|+|+||+++ +++ +.+.+.......+.+.+++++.++.+.++--+ + .+.+++. +
T Consensus 262 -i~t~gK~l~-~G~pigav~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~--~--~~~~~~~----~ 324 (421)
T PRK09792 262 -LMTMAKSLA-GGMPLSGVVG---NAN----IMDAPAPGGLGGTYAGNPLAVAAAHAVLNIID--K--ESLCERA----N 324 (421)
T ss_pred -EEEeehhhc-CCCceEEEEE---cHH----HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH--h--hhHHHHH----H
Confidence 578999999 8999999864 777 76665543334566778888886666553211 0 0222222 2
Q ss_pred HHHHHHHHHHHh----hCCCCCccccccCc-ceeEecCCC-----------HHHH-HHHhhhccEEEeCCC------cEE
Q 013839 344 RKRTTLRQNLEK----LGSSLNWEHITNQL-GMFCFSGLT-----------PYQV-DRLAKEFHIYMTQDG------RIS 400 (435)
Q Consensus 344 ~~~~~l~~~l~~----~~~~~~~~~~~~~~-g~~~~~~~~-----------~~~~-~~ll~~~gI~i~pgg------Ris 400 (435)
+..+.+.+.|+. ++. +....| |+++|+.+. ...+ ..+ .++||.+.+.| ||.
T Consensus 325 ~~g~~l~~~l~~l~~~~p~-----v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~g~~~~~irl~ 398 (421)
T PRK09792 325 QLGQRLKNTLIDAKESVPA-----IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRA-LAQGLLLLTCGAYGNVIRFL 398 (421)
T ss_pred HHHHHHHHHHHHHHHhCCC-----cceecccceEEEEEecCCccCCcchHHHHHHHHHH-HHCCcEEeecCCCCCEEEEe
Confidence 333333333332 331 223445 788887551 1223 444 46899997532 787
Q ss_pred ecc-CCCCcHHHHHHHHHHHHH
Q 013839 401 MAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 401 ~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
++. .+++++++++++|.+++.
T Consensus 399 P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 399 YPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred CCCcCCHHHHHHHHHHHHHHHh
Confidence 654 589999999999998874
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=173.28 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=153.0
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC----hhhHHHHhhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTW----SNHHNIWRDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y----~~~~~~~~~~g~~~ 167 (435)
....+|.+.++++.... +.+ .+++|+.|+..+ +.+++.+||+|+++...| ..+...++..|+++
T Consensus 70 p~~~~le~~lA~l~g~~--------~al--~~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v 137 (403)
T PRK07810 70 PTVSMFEERLRLIEGAE--------ACF--ATASGMSAVFTA--LGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVET 137 (403)
T ss_pred chHHHHHHHHHHHhCCC--------cEE--EECChHHHHHHH--HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEE
Confidence 34678999999987432 333 699999998887 777789999999887554 44455667789988
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. .|+++++++++ +++++|++++|+||||.+.+ +++|+++|+++++++|+|++|.......
T Consensus 138 ~~vd~-------~d~~~l~~ai~---~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~--- 201 (403)
T PRK07810 138 VFVDG-------EDLSQWEEALS---VPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR--- 201 (403)
T ss_pred EEECC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence 88853 28899999987 67899999999999998874 6699999999999999999986544321
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
+. . .+.++++.|++|.++..|.++ |+++ + +++. +...++...+.....++.+.++.+...|+.
T Consensus 202 ---~~----~-~gaDivv~S~tK~l~g~g~~~gG~v~--~-~~~~---~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-- 265 (403)
T PRK07810 202 ---GL----P-LGADVVVYSGTKHIDGQGRVLGGAIL--G-DREY---IDGPVQKLMRHTGPALSAFNAWVLLKGLET-- 265 (403)
T ss_pred ---hh----h-cCCcEEEccCCceecCCcCceeEEEE--e-ChHH---HHHHHHHHHHHhCCCCCHHHHHHHHhccCc--
Confidence 11 1 134788999999998889998 5554 4 5542 222344433344456677766665555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++...+.+.|++++
T Consensus 266 --------l~~R~~~~~~~a~~~a~~L~~~p 288 (403)
T PRK07810 266 --------LALRVRHSNASALRIAEFLEGHP 288 (403)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455556666667777887665
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=164.05 Aligned_cols=278 Identities=17% Similarity=0.143 Sum_probs=199.8
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
..++.+|+.+++.+ +.+++.|||+|++...+..+. .++++.+|++++.+.. +++..+|++++++++++. +..+
T Consensus 59 ~ll~gsGt~amEAa--v~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~-~~~~ 133 (383)
T COG0075 59 VLLSGSGTLAMEAA--VASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV--EWGEAVDPEEVEEALDKD-PDIK 133 (383)
T ss_pred EEEcCCcHHHHHHH--HHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhcC-CCcc
Confidence 33678889999988 888999999999999877554 5789999999999987 677789999999999965 4677
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc-cC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL-YG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G 276 (435)
++.+.++..+||+..+ +++|+++|++||.++|+|.+ ..++-.+.+ + +...-++++.+..|+++. ||
T Consensus 134 ~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaV-sS~Gg~~~~-----v----d~wgiDv~itgSQK~l~~PPG 200 (383)
T COG0075 134 AVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAV-SSLGGEPLK-----V----DEWGIDVAITGSQKALGAPPG 200 (383)
T ss_pred EEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEec-ccCCCcccc-----h----hhcCccEEEecCchhccCCCc
Confidence 8888898999999864 66999999999999999999 444433222 1 223456778888899865 45
Q ss_pred CcccEEEEEecChhHHHHHHH-----------HHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRS-----------QIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~-----------~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+|.+.+ +++.++.+.+ .+.+++ ....+++|....+++..+|+.- .++.++...+|+
T Consensus 201 --la~v~~---S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i-----~~EGle~r~~RH 270 (383)
T COG0075 201 --LAFVAV---SERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLI-----LEEGLEARIARH 270 (383)
T ss_pred --cceeEE---CHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH-----HHhhHHHHHHHH
Confidence 566654 6665444321 112222 2334566766667777777543 236688999999
Q ss_pred HHHHHHHHHHHHhhCCCCCccc--ccc-CcceeEecCCCHHHH-HHHhhhccEEEeCC-----C---cEEe-ccCCCCcH
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEH--ITN-QLGMFCFSGLTPYQV-DRLAKEFHIYMTQD-----G---RISM-AGVTTGNV 409 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~--~~~-~~g~~~~~~~~~~~~-~~ll~~~gI~i~pg-----g---Ris~-~~~~~e~i 409 (435)
+++.+.+++.++.+|+....+. ..+ -..++.-.+++.+.+ ..+++++|+.+.+| | ||+. +..+.+++
T Consensus 271 ~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv 350 (383)
T COG0075 271 RRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDV 350 (383)
T ss_pred HHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHH
Confidence 9999999999999996421100 000 011111115554333 46778889999987 2 9984 55688999
Q ss_pred HHHHHHHHHHHHhhhh
Q 013839 410 NYLANAIHEVTRSEQE 425 (435)
Q Consensus 410 ~~~~~~l~~~l~~~~~ 425 (435)
..++.+|..++.+++.
T Consensus 351 ~~~l~ale~~L~~~g~ 366 (383)
T COG0075 351 LAALAALEAALRELGV 366 (383)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=170.65 Aligned_cols=326 Identities=13% Similarity=0.080 Sum_probs=200.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.++|+.++|+.....+...+...+++++...+. ..-++...-+.+|-+++|+++... . ++++++|
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e--------~--all~sSG 171 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKE--------D--CLVCPTG 171 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCC--------c--EEEECCh
Confidence 47899999998665444444444444444433221 111222233467888888888322 2 3368899
Q ss_pred hhHHHHHHHHHHH--------------hCCCCEEEEcCCCChhhHHHHhhC----CCCeeeeeecCCCCCCcChHhHHHH
Q 013839 127 TGACRLFAEFQRR--------------FHPESHIYFPDPTWSNHHNIWRDA----QIPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 127 ~~a~~~~~~~~~~--------------~~~gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
..|...+ +.++ ..++|.|+...-.+......++.. +++++.++. .|+++|++.
T Consensus 172 y~AN~~~--i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~ 242 (476)
T PLN02955 172 FAANMAA--MVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSL 242 (476)
T ss_pred HHHHHHH--HHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHH
Confidence 8887776 3333 134456666666666666666655 355555542 288999999
Q ss_pred hhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 189 IKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 189 i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
+++.+.+.++|++....++.|.+.+ +++|.++|++||+++|+||+|..+..+.. .......+.-..+.+|+++||
T Consensus 243 L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~--G~G~~e~~g~~~di~ii~~TL 317 (476)
T PLN02955 243 LSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGEN--GGGVAEEFNCEADVDLCVGTL 317 (476)
T ss_pred HHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCC--CCcHHHHhCCCCCCcEEEEeC
Confidence 8765555677887778899998877 66888899999999999999887766531 111222232235778999999
Q ss_pred cccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChh-HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVH-GILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
||++|..| |++++ +++ +++.++...+.. +.++.++ ...++.+++... ......++++.++.
T Consensus 318 sKA~G~~G---Gfi~g---s~~----~~~~l~~~~~~~ifStalpp~~aaa~laal~l~-------~~~~~~r~~L~~n~ 380 (476)
T PLN02955 318 SKAAGCHG---GFIAC---SKK----WKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA-------RKEKWRRKAIWERV 380 (476)
T ss_pred ccchhccC---ceeec---HHH----HHHHHHHhCCCCeecccccHHHHHHHHHHHHHH-------hcCHHHHHHHHHHH
Confidence 99998777 99853 777 777777655532 2222222 222222333211 11124567777777
Q ss_pred HHHHHHHHhhCCCCCccccccCcce-eEecCCCH--HHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHH
Q 013839 347 TTLRQNLEKLGSSLNWEHITNQLGM-FCFSGLTP--YQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNY 411 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~--~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~ 411 (435)
+++++. .|+ .. ...+ .++++-.. ..+.+.|.++||.+.+. | ||+++. .+++||++
T Consensus 381 ~~fr~~---~G~----~~---~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~ 450 (476)
T PLN02955 381 KEFKAL---SGV----DI---SSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKK 450 (476)
T ss_pred HHHHHh---cCC----CC---CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHH
Confidence 777763 343 22 1222 23344422 23334445689999743 2 888754 48899999
Q ss_pred HHHHHHHHHHhhhhh
Q 013839 412 LANAIHEVTRSEQET 426 (435)
Q Consensus 412 ~~~~l~~~l~~~~~~ 426 (435)
++++|.++......+
T Consensus 451 lv~~L~~~~~~~~~~ 465 (476)
T PLN02955 451 LITALSSCLDFDNTA 465 (476)
T ss_pred HHHHHHHHHhhhcce
Confidence 999999987765543
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=170.62 Aligned_cols=275 Identities=13% Similarity=0.114 Sum_probs=179.3
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH 171 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 171 (435)
....+|.++++++..+. +++ .++||++|+.++ + .++.+||+|+++.+.|......+.....+. .+.
T Consensus 54 p~~~~le~~lA~leg~~--------~~v--~~~sG~aAi~~~--l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~~~ 119 (364)
T PRK07269 54 PTRAKLEETLAAIESAD--------YAL--ATSSGMSAIVLA--F-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-RFH 119 (364)
T ss_pred ccHHHHHHHHHHHhCCC--------eEE--EeCCHHHHHHHH--H-HHhCCCCEEEEecCCcCchHHHHHHHHhcC-cEE
Confidence 45679999999998322 455 899999999887 4 457899999999999976654433221110 111
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. .+..|+++++++++ +++++|++++|+||||.+. ++++|+++|+++|+++|+|++|....+. .+
T Consensus 120 ~----~~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~~------~p 183 (364)
T PRK07269 120 F----TYANTEEELIAAIE---EDTDIVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIYQ------RP 183 (364)
T ss_pred E----EecCCHHHHHHhcC---cCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccC------Cc
Confidence 1 13468999999997 6889999999999999776 6779999999999999999996432211 12
Q ss_pred HHHhhhcCCeEEEEecccccccccCCc-ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHR-VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
+. ..-.+++.|++|.++-+|-- .||++ +.+++ +.++++.........++.+..+.+..-|+
T Consensus 184 l~-----~gaDivv~S~tK~l~g~~d~~gG~v~--~~~~~----l~~~~~~~~~~~G~~~s~~~a~l~~~~L~------- 245 (364)
T PRK07269 184 IE-----LGADIVLHSATKYLSGHNDVLAGVVV--TNDLE----LYEKLFYNLNTTGAVLSPFDSYLLMRGLK------- 245 (364)
T ss_pred hh-----hCCcEEEecCceeccCCCcccceEEE--eCcHH----HHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------
Confidence 21 12358899999999744432 36664 44566 55656544433334556665554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhc-------------cEEEeCC-
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEF-------------HIYMTQD- 396 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~-------------gI~i~pg- 396 (435)
.+....++.+++...+.+.|+.++.- ....+++.+|++.|.-.+.+.+.++++.- .+.+.|.
T Consensus 246 ---tL~~r~~~~~~na~~~a~~L~~~p~v-~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~ 321 (364)
T PRK07269 246 ---TLSLRMERSTANAQEVVAFLKKSPAV-KEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTT 321 (364)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhCCCc-cEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcc
Confidence 34566667778888888888876521 12344777888777632333333332221 2232231
Q ss_pred --------------C------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 397 --------------G------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 397 --------------g------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
| |+|++- |+.+.+++-|.++++
T Consensus 322 ~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 322 QTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE 363 (364)
T ss_pred cccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence 1 888855 777888888877663
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-19 Score=171.42 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=151.9
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~ 167 (435)
....+|.+.++++. +. ++++ +++||++|+.++ +.+++++||+|++++|+|..+.. .+...|+++
T Consensus 65 pt~~~Le~~lA~l~-g~-------~~~l--~~~sgt~Ai~~~--l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v 132 (394)
T PRK07050 65 PTSLALAQRLAEIE-GG-------RHAL--LQPSGLAAISLV--YFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITV 132 (394)
T ss_pred HHHHHHHHHHHHHh-CC-------CeEE--EeccHHHHHHHH--HHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEE
Confidence 34567888888876 32 2555 899999999988 77778999999999999988664 456778888
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. . +.+++++.++ +++++|++++|+||+| +..++++|+++|+++|+++|+|++|.......
T Consensus 133 ~~vd~---~----~~~~l~~~i~---~~tklV~le~p~Np~~---~~~di~~I~~ia~~~gi~livD~a~a~~~~~~--- 196 (394)
T PRK07050 133 RFYDP---L----IGAGIADLIQ---PNTRLIWLEAPGSVTM---EVPDVPAITAAARARGVVTAIDNTYSAGLAFK--- 196 (394)
T ss_pred EEECC---C----CHHHHHHhcC---CCCeEEEEECCCCCCc---cHhhHHHHHHHHHHcCCEEEEECCcccccccC---
Confidence 87753 1 3467888887 6789999999999996 57789999999999999999999985533211
Q ss_pred cHHHHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
++ . ...++++.|++|.++ ..+.+.|+++ +.+++ ++++++........+.+....+.+...+.+
T Consensus 197 ---~l----~-~GaDi~v~S~tK~~~g~~~~~gG~v~--~~~~~----~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-- 260 (394)
T PRK07050 197 ---PF----E-HGVDISVQALTKYQSGGSDVLMGATI--TADAE----LHAKLKLARMRLGIGVSADDCSLVLRGLPS-- 260 (394)
T ss_pred ---HH----H-cCCeEEEEECCceecCCCCeeEEEEE--ECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHcCCCc--
Confidence 11 1 134789999999986 2334578875 44677 777776655544556666655444443432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++...+.+.|++.+
T Consensus 261 --------l~~Rl~~~~~~a~~la~~L~~~p 283 (394)
T PRK07050 261 --------LQVRLAAHDRSALEVAEWLKARP 283 (394)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 23344555555666777777654
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=178.91 Aligned_cols=287 Identities=14% Similarity=0.114 Sum_probs=182.6
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHH-H-HhCCCCEEEEcCCCChhhHHHH---hhCCCCe
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ-R-RFHPESHIYFPDPTWSNHHNIW---RDAQIPE 167 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~-~-~~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~ 167 (435)
...++|+.+++++ +.+ +++++ +++|+++++.+++..+ . .+.+||+|++.+++|+.....+ +..|+++
T Consensus 50 ~~~~~r~~ia~~~-g~~-----~~~v~--~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~ 121 (404)
T PRK14012 50 AVDIARNQIADLI-GAD-----PREIV--FTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV 121 (404)
T ss_pred HHHHHHHHHHHHc-CcC-----cCeEE--EeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEE
Confidence 3567788888887 332 45677 8999999998874222 1 1478999999999997765444 3469999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. ++++.+|++.|+++++ ++++++++++++||||...+ +++|.++|+++|+++|+|+++.. ...+.
T Consensus 122 ~~v~~--~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~-g~~~~-- 190 (404)
T PRK14012 122 TYLDP--QSNGIIDLEKLEAAMR---DDTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV-GKVPI-- 190 (404)
T ss_pred EEEcc--CCCCcCCHHHHHHhcC---CCCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc-CCccc--
Confidence 99887 3456789999999997 67899999999999999876 56999999999999999999642 21111
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH-h-----h-ccccCCChhHHHHHHH
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-A-----R-AMYGSPPVHGILLVAT 320 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-~-----~-~~~~~~~~~~q~~~~~ 320 (435)
++ ...+-.+++.|++|.+| |+ ++|++++ +++ ....+... . . ....+++.....++.+
T Consensus 191 ---~~----~~~~~D~~~~s~~K~~g-p~-g~G~l~~---~~~----~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~ 254 (404)
T PRK14012 191 ---DL----SKLKVDLMSFSAHKIYG-PK-GIGALYV---RRK----PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGE 254 (404)
T ss_pred ---Cc----ccCCCCEEEEehhhccC-CC-ceEEEEE---ecC----CCCCCCceecCCCccCCccCCCcCHHHHHHHHH
Confidence 11 11234567779999887 43 5788864 333 11111110 0 0 1112233333333334
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-----ccCcceeEecC-CCHHHHHHHhhhccEEEe
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-----TNQLGMFCFSG-LTPYQVDRLAKEFHIYMT 394 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~g~~~~~~-~~~~~~~~ll~~~gI~i~ 394 (435)
++.... .......++.++.++++.+.|+++.. +... .....+++++. .+.+.+...++ ++.+.
T Consensus 255 al~~~~------~~~~~~~~~~~~l~~~l~~~L~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~i~ 323 (404)
T PRK14012 255 AARIAK------EEMATENERIRALRDRLWNGIKDIEE---VYLNGDLEQRVPGNLNVSFNYVEGESLIMALK--DLAVS 323 (404)
T ss_pred HHHHHH------hhHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCEEEEEEeCcCHHHHHHhCC--CeEEE
Confidence 443211 23445667778888888888876541 2221 11122334443 34444444444 44433
Q ss_pred CC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 395 QD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 395 pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.| + |+++.. .++++++++++.|+++++.+..
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 324 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred chhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 22 2 888764 4789999999999999877643
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-19 Score=174.99 Aligned_cols=348 Identities=13% Similarity=0.054 Sum_probs=198.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCC--CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLE--SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...||+..|.-...-| ...+.+++++.+++....... +....-..++-+.+++...+.. .+.+. +++
T Consensus 51 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~-----~~~v~--f~~ 122 (451)
T PRK06918 51 VDGNQYIDFAGAIGTINVG-HSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSF-----DKKVL--FLN 122 (451)
T ss_pred CCCCEEEEcCCchhhcCCC-CCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCC-----CCEEE--EcC
Confidence 3667889988875211112 122334444445544221110 0011112334444444331110 13666 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-CC-------------CeeeeeecCCC--CCCcC-------
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-QI-------------PERTYHYYDPD--SKSLD------- 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~--~~~~d------- 181 (435)
+|++|++.+..+........+|+....+|.+........ +- .+..+|..+.. ..++.
T Consensus 123 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (451)
T PRK06918 123 SGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDF 202 (451)
T ss_pred CcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHH
Confidence 999999999866665544477888888887775433221 10 01122221000 01111
Q ss_pred -hHhHHHHhhc--CCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 182 -FAALMDDIKN--APDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 182 -~e~l~~~i~~--~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++.+++.+.. .+++..++++...+.-.|.+++ .+.+++|.++|++||+++|+||+|.++...+ ..++...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g---~~~a~~~~~v 279 (451)
T PRK06918 203 MIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG---KYFAIEHFDV 279 (451)
T ss_pred HHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC---ceehhHhcCC
Confidence 1234433321 2245666666544444476554 5559999999999999999999999997754 1223333321
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
..+ +.|+||.++ +|+|+||+++ +++ +++.+.......+.+.+.++|.++.+.|+.-. . ..
T Consensus 280 ~pD----i~t~sK~l~-~G~pig~v~~---~~~----i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~-~-------~~ 339 (451)
T PRK06918 280 VPD----LITVSKSLG-AGVPISGVIG---RKE----IMDESAPGELGGTYAGSPLGCAAALAVLDIIE-K-------EN 339 (451)
T ss_pred CCC----EEeeehhhc-CCCccEEEEE---cHH----HHhccCCCCcCcCCCcCHHHHHHHHHHHHHHH-H-------CC
Confidence 222 448999999 9999999974 777 77766544445667888898888777664210 0 11
Q ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC--------CH---HHHHHHhhhccEEEeCCC------c
Q 013839 338 MADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL--------TP---YQVDRLAKEFHIYMTQDG------R 398 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~--------~~---~~~~~ll~~~gI~i~pgg------R 398 (435)
..++.++..+.+.+.|+++ ..+ .+....+.|+++.|.-. +. +.+...+.++||.+.|++ |
T Consensus 340 ~~~~~~~~g~~l~~~l~~l~~~~~-~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lr 418 (451)
T PRK06918 340 LNDRAIELGKVVMNRFEEMKNKYN-CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIR 418 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEE
Confidence 2222333333344444332 111 12234567887776532 12 223333356899999863 8
Q ss_pred EEecc-CCCCcHHHHHHHHHHHHHhhhhh
Q 013839 399 ISMAG-VTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 399 is~~~-~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
|+++. .+++++++++++|.++++++.++
T Consensus 419 l~p~l~~t~~~id~~l~~l~~~l~~~~~~ 447 (451)
T PRK06918 419 VLMPLVITDEQLEEGLTIIEESLQACYEK 447 (451)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88754 58999999999999999877654
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-19 Score=172.16 Aligned_cols=343 Identities=13% Similarity=0.074 Sum_probs=210.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...+|+..|.-...-|.. .+++++++.+++.......+ .+.....++-+.+++...... .+++. +++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~~~--f~~ 108 (421)
T PRK06777 37 VEGREYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDG-----PAKTA--FFT 108 (421)
T ss_pred CCCCEEEEcccCHHhhccCCC-CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCC-----CceEE--EeC
Confidence 366888998877421111211 22344444444442211111 111222344444444431111 23666 889
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCC-------------eeeeeecCCCCCC----cChHhHH
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIP-------------ERTYHYYDPDSKS----LDFAALM 186 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~-------------~~~v~~~~~~~~~----~d~e~l~ 186 (435)
+|++|++.+..+........+|+....+|.+....... .+.. +..++.. ....+ -+++.++
T Consensus 109 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~l~ 187 (421)
T PRK06777 109 TGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYP-NELHGVSVEEALSSVE 187 (421)
T ss_pred CcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCC-ccccCcCHHHHHHHHH
Confidence 99999999976665554446788888888777543322 1210 1111211 10111 2356677
Q ss_pred HHhhc--CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 187 DDIKN--APDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 187 ~~i~~--~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+.+.+ .+++..++++...+++.|. ..+++.+++|.++|++||+++|.||+|.++...+ ..+....+ +....+
T Consensus 188 ~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g---~~~~~~~~-~~~pDi- 262 (421)
T PRK06777 188 RLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG---KLFAMEYY-DVKPDL- 262 (421)
T ss_pred HHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC---chhhhhhc-CCCCCE-
Confidence 77753 3356788888877888886 5789999999999999999999999999887654 22333333 222222
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
-++||.++ +|+|+||+++ +++ +++.+.......+.+.+.+++.++.+.|+... + +...++++
T Consensus 263 --v~~sK~l~-~G~pigav~~---~~~----i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~------~--~~l~~~~~ 324 (421)
T PRK06777 263 --ITMAKSLG-GGMPISAVVG---RAE----VMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA------E--EKLCQRAL 324 (421)
T ss_pred --Eeeehhhc-CCCceEEEEE---cHH----HHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence 26999999 9999999974 777 77766654445567788999999888885321 1 35666777
Q ss_pred HHHHHHHHHHHhhCCC-CCccccccCcceeEe-cCC------CHHH---HHHHhhhccEEEeCCC------cEEec-cCC
Q 013839 344 RKRTTLRQNLEKLGSS-LNWEHITNQLGMFCF-SGL------TPYQ---VDRLAKEFHIYMTQDG------RISMA-GVT 405 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~-~~~------~~~~---~~~ll~~~gI~i~pgg------Ris~~-~~~ 405 (435)
++.+++.+.|+++... ..+....+.|.++.+ +.. +.++ +...+.++||.+.|++ ||++. ..+
T Consensus 325 ~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~ 404 (421)
T PRK06777 325 ILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIP 404 (421)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCC
Confidence 7778888777765210 013345677777764 221 1222 2222356899999864 88763 348
Q ss_pred CCcHHHHHHHHHHHHH
Q 013839 406 TGNVNYLANAIHEVTR 421 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~ 421 (435)
++++++++++|.+++.
T Consensus 405 ~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 405 DAQFSKALNILTRLLA 420 (421)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988864
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=175.15 Aligned_cols=339 Identities=14% Similarity=0.050 Sum_probs=208.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...+|+..|.+...-|. .++.+++++.+++... ...|.+..+..+|.+.+++...+ .+.+. ++++|
T Consensus 47 ~dG~~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~~-~~~~~~~~~~~~la~~L~~~~~~-------~~~v~--~~~sG 115 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILGH-AHPEVVEAVIEAAEKG-LSFGAPTELEVELAELVIELVPS-------IEMVR--MVNSG 115 (426)
T ss_pred CCCCEEEEcccchhhhhcCC-CCHHHHHHHHHHHHhC-CcCCCCCHHHHHHHHHHHHhCCC-------CCEEE--EecCH
Confidence 36789999999864221222 3345555555565543 23345556666777777776522 23666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C------------CCeeeee---ecCCCCCCcChHhHHHHhh
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q------------IPERTYH---YYDPDSKSLDFAALMDDIK 190 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~---~~~~~~~~~d~e~l~~~i~ 190 (435)
++|++.+..+......+++|+..+++|.++...+... | .....++ ...+ -.|++.+++.+.
T Consensus 116 seA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~i~ 192 (426)
T PRK00062 116 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP---YNDLEAVEELFE 192 (426)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC---CCCHHHHHHHHH
Confidence 9999999655444445689999999999886432211 1 0000000 0001 137889988886
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA 269 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 269 (435)
+.+.++.+|++.....-+|.+.+ .+.+++|.++|++||+++|+||+|.++..+. ......+ +.... +.++|
T Consensus 193 ~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~----~~~~~~~-~~~pD---i~~~g 264 (426)
T PRK00062 193 EYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL----GGAQGYY-GVTPD---LTTLG 264 (426)
T ss_pred hCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC----ccHHHHh-CCCcc---hHhhh
Confidence 54456777777654455888875 7889999999999999999999998774432 1122112 21111 46899
Q ss_pred ccccccCCcccEEEEEecChhHHHHHHHHHHHH---hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 270 KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI---ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 270 K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
|.++ .|+++|++++ +++ +++.+... ....+.+.+.+.+.++.+.|+.-. + .+..++.++.....+
T Consensus 265 K~l~-~G~p~ga~~~---~~~----i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~--~--~~~~~~~~~~~~~~~ 332 (426)
T PRK00062 265 KIIG-GGLPVGAFGG---RRE----IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLK--E--PGFYEELEALTKRLA 332 (426)
T ss_pred hHhh-CCCcceeeeE---HHH----HHHhhccCCCceecccCcCCHHHHHHHHHHHHHHh--c--chHHHHHHHHHHHHH
Confidence 9999 8999999864 777 77766421 122345677788887777775321 0 012333333333344
Q ss_pred HHHHHHHHhhCCCCCccccccCcceeEec-CC------------C---HHHHHHHhhhccEEEeCCC----cEEeccCCC
Q 013839 347 TTLRQNLEKLGSSLNWEHITNQLGMFCFS-GL------------T---PYQVDRLAKEFHIYMTQDG----RISMAGVTT 406 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~-~~------------~---~~~~~~ll~~~gI~i~pgg----Ris~~~~~~ 406 (435)
+.|.+.+++++.. ....+.|.++.+. .. + ...+...+.++||.+.|.+ ++++. .++
T Consensus 333 ~~l~~~~~~~~~~---~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~~~-~t~ 408 (426)
T PRK00062 333 EGLKEAAKKAGIP---LTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVSAA-HTD 408 (426)
T ss_pred HHHHHHHHHcCCc---eEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeeecc-CCH
Confidence 4444444444531 1133455555432 11 1 1234444456899998865 77754 489
Q ss_pred CcHHHHHHHHHHHHHhh
Q 013839 407 GNVNYLANAIHEVTRSE 423 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++|+++++++
T Consensus 409 ~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 409 EDIEKTLEAARKAFAAL 425 (426)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988653
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=171.59 Aligned_cols=344 Identities=11% Similarity=-0.001 Sum_probs=197.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..||+..|.-...-|.. .+++++++.+++.......+ .+.....++-+.+++...+.. .+.+. +++
T Consensus 30 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~v~--f~~ 101 (420)
T TIGR00700 30 VDGNRLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSG-----PKKSV--FFN 101 (420)
T ss_pred CCCCEEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCC-----CCEEE--EeC
Confidence 356788999887421111212 23445555555543211111 111112244444444432111 23666 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C--------C-----CeeeeeecCCCC---------CCcC
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q--------I-----PERTYHYYDPDS---------KSLD 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g--------~-----~~~~v~~~~~~~---------~~~d 181 (435)
+|++|++.+..+........+|+....+|.+........ + . .+..++..+... +.-+
T Consensus 102 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (420)
T TIGR00700 102 SGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGE 181 (420)
T ss_pred CcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHH
Confidence 999999999766655544477888888887764332221 1 1 111122200000 0012
Q ss_pred hHhHHHHhh--cCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc
Q 013839 182 FAALMDDIK--NAPDSSFFLLHPSAHNPTGVDPTE-EQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED 258 (435)
Q Consensus 182 ~e~l~~~i~--~~~~~~~~v~~~~p~NPtG~~~~~-~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 258 (435)
++.+++.+. ..+++..+|++...+.-+|..++. +.+++|.++|++||+++|+||+|.+|.+.+ ..+....+ +.
T Consensus 182 ~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g---~~~a~~~~-~~ 257 (420)
T TIGR00700 182 LAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG---AMFACEHE-GP 257 (420)
T ss_pred HHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---hhHHHhhc-CC
Confidence 456666653 234567888887777778887754 459999999999999999999999987654 12233222 11
Q ss_pred CCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIM 338 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~ 338 (435)
... +.++||.++ +|+|+||+++ +++ +++.+.......+.+.+.++|.++.+.|+.-. .+.+.+.+++.
T Consensus 258 ~pD---i~~lsK~l~-~G~pig~v~~---~~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~-~~~~~~~~~~~ 325 (420)
T TIGR00700 258 EPD---LITTAKSLA-DGLPLSGVTG---RAE----IMDAPAPGGLGGTYAGNPLACAAALAVLAIIE-SEGLIERARQI 325 (420)
T ss_pred CCC---EEEeecccc-CCcceEEEEe---cHH----HHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH-hccHHHHHHHH
Confidence 112 345999999 9999999975 787 77766544445567788888888877664211 00112222233
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--------CHH---HHHHHhhhccEEEeCCC------cEEe
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--------TPY---QVDRLAKEFHIYMTQDG------RISM 401 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--------~~~---~~~~ll~~~gI~i~pgg------Ris~ 401 (435)
.++++ +.+.+..+.++. +....+. |.+.|+.+ +.+ .+...+.++||.+.|++ ||++
T Consensus 326 g~~l~---~~L~~l~~~~~~---~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p 398 (420)
T TIGR00700 326 GRLVT---DRLTTLKAVDPR---IGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLP 398 (420)
T ss_pred HHHHH---HHHHHHHhhCCC---EEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEEC
Confidence 22222 222222222331 2334455 55555533 112 22222357899999863 8887
Q ss_pred cc-CCCCcHHHHHHHHHHHHH
Q 013839 402 AG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 402 ~~-~~~e~i~~~~~~l~~~l~ 421 (435)
+. .+++++++++++|.+++.
T Consensus 399 ~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 399 PLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CCCcCHHHHHHHHHHHHHHhh
Confidence 53 588999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-18 Score=171.49 Aligned_cols=335 Identities=11% Similarity=0.043 Sum_probs=203.6
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCC-CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLE-SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++...+|+..|.-...-| ...+++++++.+++....... +-......+|.+.++++. +. +.+. ++++
T Consensus 72 ~dG~~ylD~~sg~~~~~~G-h~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~-~~-------~~~~--f~~S 140 (474)
T PLN02624 72 PEGKKYLDFLSAYSAVNQG-HCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF-GY-------DMVL--PMNT 140 (474)
T ss_pred CCCCEEEEcccchhcccCC-CCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc-CC-------CeEE--EeCC
Confidence 3567788887764211111 113344444445544211111 112233456777777664 22 3566 8999
Q ss_pred chhHHHHHHHHHHHhC-------CCC-EEEEcCCCChhhHHHHhhCCCC-------------eeeeeecCCCCCCcChHh
Q 013839 126 GTGACRLFAEFQRRFH-------PES-HIYFPDPTWSNHHNIWRDAQIP-------------ERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-------~gd-~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~ 184 (435)
|++|++.+..+..... +++ +|+...-+|.+..........+ +..++. .|++.
T Consensus 141 GseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 213 (474)
T PLN02624 141 GAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDA 213 (474)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHH
Confidence 9999999976554431 233 5777777776653322211111 111111 26789
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQ-WREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+++.++..++++++|++..++||+|.++++++ +++|.++|++||+++|+||+|.+++..+ ...... ..+....+
T Consensus 214 l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG---~~~a~~-~~~i~pDi- 288 (474)
T PLN02624 214 LEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG---KMLACD-WEEVRPDV- 288 (474)
T ss_pred HHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc---chhhHH-hcCCCCCE-
Confidence 99988765567899999999999999987774 9999999999999999999998776543 112221 11222222
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
.++||.+|..++++|++++ +++ ++..+.......+++.+.+.+.++.+.|+.-. + ....++..
T Consensus 289 --v~lsK~lggG~~pigav~~---~~~----i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~------~--~~l~~~~~ 351 (474)
T PLN02624 289 --VILGKALGGGVIPVSAVLA---DKD----VMLCIKPGEHGSTFGGNPLASAVAMAALQVVQ------D--EKLAERSA 351 (474)
T ss_pred --EEecccccCCCCcceeeee---cHH----HHhHhccCCcCCCCCCCHHHHHHHHHHHHHHH------h--chHHHHHH
Confidence 3368999977799999974 667 76666544434555678888888888775321 1 12334455
Q ss_pred HHHHHHHHHHHhhC--CCCCccccccCcceeEe-cCCC------H-HHHHHHhhhccEEEeCCC----cEEe-ccCCCCc
Q 013839 344 RKRTTLRQNLEKLG--SSLNWEHITNQLGMFCF-SGLT------P-YQVDRLAKEFHIYMTQDG----RISM-AGVTTGN 408 (435)
Q Consensus 344 ~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~-~~~~------~-~~~~~ll~~~gI~i~pgg----Ris~-~~~~~e~ 408 (435)
++.+.+.+.|+.+. .+..+....+.+.++.+ ++.. . ++... +.++||.+.|++ ||++ ...++++
T Consensus 352 ~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~-L~e~GV~v~p~~~~~lR~~p~l~~t~e~ 430 (474)
T PLN02624 352 KLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLK-LKERGLLAKPTHDTIIRLAPPLSISEDE 430 (474)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHH-HHhCCeEEecCCCCEEEEECCccCCHHH
Confidence 55566666665542 11112234455555442 3321 1 23444 467999999875 8875 2348999
Q ss_pred HHHHHHHHHHHHHh
Q 013839 409 VNYLANAIHEVTRS 422 (435)
Q Consensus 409 i~~~~~~l~~~l~~ 422 (435)
+++++++|+++++.
T Consensus 431 id~~l~~L~~~l~~ 444 (474)
T PLN02624 431 LQECSKALSDVLEH 444 (474)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=168.57 Aligned_cols=326 Identities=12% Similarity=0.069 Sum_probs=193.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC------CCCCCC----CCcccHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS------EFLESI----SASVSTKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.++|+.++|++....+.+.+.+.+++...... ...+.. ...-+.++++.+++++... +.+
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-------~~l- 75 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-------EAF- 75 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-------eEE-
Confidence 5789999999988877777777666666655210 011122 3334678899999988332 123
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCc
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSS 196 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~ 196 (435)
+.++|..++..+ ...+..+||.|++..-.+......++......+.++ ..|+++|++.+++. .+.+
T Consensus 76 --~~~sG~~a~~~~--~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~ 144 (370)
T PRK05937 76 --IVPSGYMANLGL--CAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGR 144 (370)
T ss_pred --EECChHHHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCc
Confidence 455555565433 333345778777766666555555555433333332 24889999988742 1345
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
.++++++++|+||.+.+ +++|.++|+++|+++++|++|....++. +...........+..+.+.|+||.+|..|
T Consensus 145 ~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~---~g~g~~~~~~~~~~~~~~~tlsK~~g~~G 218 (370)
T PRK05937 145 IFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGD---DGKGFCHSLGYENFYAVLVTYSKALGSMG 218 (370)
T ss_pred EEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCcEEEEechhhhhcCc
Confidence 67788999999999987 5588899999999999999986533321 11111111111223467899999999777
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhh--ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIAR--AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
. .++ + .++ +...+..... ....+.+.+...++..++..- .+..+..++++++.++++.+.|.
T Consensus 219 ~---~vl--~-~~~----~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l------~~~~~~~~~~l~~l~~~l~~~l~ 282 (370)
T PRK05937 219 A---ALL--S-SSE----VKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL------SQEGELARKQLFRLKEYFAQKFS 282 (370)
T ss_pred e---EEE--c-CHH----HHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH------HhCcHHHHHHHHHHHHHHHHhcC
Confidence 3 232 3 555 4444432111 112234445444444444211 01113345667777777777664
Q ss_pred hhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCC-----C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 355 KLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD-----G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg-----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
..+. .. ...+.+.+...+.+.+.|+++||.+... + |+|+.. .+++|++++++.|++++++..
T Consensus 283 ~~~~----~~----~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 283 SAAP----GC----VQPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred CCCC----CC----EEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3210 00 0112223445555666667789988632 2 999853 388999999999999987653
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=166.78 Aligned_cols=219 Identities=12% Similarity=0.059 Sum_probs=156.2
Q ss_pred CCCCCC--cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH---
Q 013839 86 LESISA--SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW--- 160 (435)
Q Consensus 86 ~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~--- 160 (435)
..|... .....|+++++++..+. ++. ++.||++|+.++ +.+++++||+|++++|.|.++...+
T Consensus 53 ~~Y~r~~npt~~~Le~~iA~le~~~--------~~~--~~~sG~~Ai~~~--l~all~~GD~Vvv~~~~Y~~t~~l~~~~ 120 (394)
T PRK09028 53 MFYGRRGTPTHFAFQAAIVELEGGA--------GTA--LYPSGAAAISNA--LLSFLKAGDHLLMVDSCYEPTRDLCDKI 120 (394)
T ss_pred ceecCCCCchHHHHHHHHHHHhCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHh
Confidence 346652 34469999999886332 445 899999999988 7778999999999999998776543
Q ss_pred -hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC
Q 013839 161 -RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG 239 (435)
Q Consensus 161 -~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~ 239 (435)
...|+++..++. . +.+.+++.+. +++++|++++|+||||.+ .++++|+++|+++|+++|+|++|..
T Consensus 121 l~~~Gi~v~~v~~---~----~~e~l~~~l~---~~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~ 187 (394)
T PRK09028 121 LKGFGIETTYYDP---M----IGEGIRELIR---PNTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWAS 187 (394)
T ss_pred hhhcceEEEEECC---C----CHHHHHHhcC---cCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence 456777665542 1 4577888886 679999999999999765 6788999999999999999999864
Q ss_pred ccCCCCcccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHH
Q 013839 240 FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLV 318 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~ 318 (435)
...- . ++ ...-++++.|.+|.+ |..+...|+++ . +++ +.+.+..........+++...+.+
T Consensus 188 p~~~----~--Pl-----~~GaDivv~S~tK~l~Gh~d~~~G~~~--~-~~~----~~~~l~~~~~~~G~~~~p~~a~l~ 249 (394)
T PRK09028 188 PINS----R--PF-----EMGVDISIQAATKYIVGHSDVMLGTAT--A-NEK----HWDQLREHSYLMGQCTSPDDVYLA 249 (394)
T ss_pred cccC----C--cc-----ccCceEEEEeCCeEecCCCCEEEEEEE--C-CHH----HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3211 1 11 124579999999998 43445556553 3 666 555555444444455666655555
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 319 ATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 319 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
..-|+ .+....++..++...+.+.|++++
T Consensus 250 ~rgl~----------TL~lR~~~~~~na~~la~~L~~~p 278 (394)
T PRK09028 250 MRGLR----------TLGVRLAQHEKNALKVANWLATRP 278 (394)
T ss_pred HcccC----------cHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44443 345666778888888889998876
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=167.94 Aligned_cols=189 Identities=11% Similarity=0.063 Sum_probs=134.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEc
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFP 149 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~ 149 (435)
+..+.+.+.+..+ ...++ ....+|++++++++... +++ .++||++|+.++ +.++ +.+||+|+++
T Consensus 15 ~e~~~~~~~l~~~-~~~~g--~~~~~le~~la~~~g~~--------~~v--~~~sgt~al~la--l~al~~~~Gd~Viv~ 79 (379)
T PRK11658 15 EELAAVKEVLRSG-WITTG--PKNQALEQAFCQLTGNQ--------HAI--AVSSATAGMHIT--LMALGIGPGDEVITP 79 (379)
T ss_pred HHHHHHHHHHHcC-CccCC--HhHHHHHHHHHHHhCCC--------eEE--EECCHHHHHHHH--HHHcCCCCCCEEEEC
Confidence 3344444444443 22233 34789999999998332 334 689999999988 6666 7899999999
Q ss_pred CCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCc
Q 013839 150 DPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGH 229 (435)
Q Consensus 150 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~ 229 (435)
+|+|..+...+...|++++.+++ +.+++.+|++++++++. +++++++ |+||+|... ++++|.++|++||+
T Consensus 80 ~~~~~~~~~~~~~~G~~~v~vd~-~~~~~~~d~~~l~~~i~---~~tkav~---~~~~~G~~~---d~~~i~~~a~~~gi 149 (379)
T PRK11658 80 SLTWVSTLNMIVLLGATPVMVDV-DRDTLMVTPEAIEAAIT---PRTKAII---PVHYAGAPA---DLDAIRAIGERYGI 149 (379)
T ss_pred CCcHHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhcc---cCCeEEE---EeCCCCCcC---CHHHHHHHHHHcCC
Confidence 99999998888999999999998 45667899999999997 6788876 577899865 46689999999999
Q ss_pred eeeeeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 230 FPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 230 ~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
++|+|+++.. ..+.+. .+ ...+. .+.||++.-.+++.+.|+++ +.+++ +.++++.
T Consensus 150 ~vi~D~a~a~g~~~~~~-----~~---g~~g~---~~~Sf~~~K~l~~g~GG~v~--~~~~~----~~~~~~~ 205 (379)
T PRK11658 150 PVIEDAAHAVGTYYKGR-----HI---GARGT---AIFSFHAIKNITCAEGGLVV--TDDDE----LADRLRS 205 (379)
T ss_pred eEEEECCCccCCeECCe-----ec---CCCCC---EEEeCCCCCcCcccCceEEE--ECCHH----HHHHHHH
Confidence 9999999763 333221 11 11122 34556544444666778875 54677 5555554
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=163.27 Aligned_cols=325 Identities=17% Similarity=0.166 Sum_probs=214.6
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+..++||+.++|......+...+.+.++++.... +.-.-++...-+.+|-+.+|+|+ +.. . +++..+
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~-g~e-------~--al~f~S 107 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL-GAE-------A--ALLFSS 107 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh-CCC-------c--EEEEcc
Confidence 5789999999995554444444444444444321 11222444455678888888887 432 2 336788
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHP 202 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~ 202 (435)
|-.|+..+ +.+++.+||.|+...-.+-...+.++..+++.+.+.. .|++.|++.+.+. +.+.++|++.
T Consensus 108 Gy~AN~~~--i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~Ivte 178 (388)
T COG0156 108 GFVANLGL--LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTE 178 (388)
T ss_pred cchhHHHH--HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEe
Confidence 88887777 7888889999999998887788888888999888753 3789999999762 1135777776
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
..-.-.|.+ .++++|++++++|++++++||+|....+++. .......+ ....+.+|.++||||++|..| ||
T Consensus 179 gVfSMdGdi---ApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~--GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~ 250 (388)
T COG0156 179 GVFSMDGDI---APLPELVELAEKYGALLYVDEAHAVGVLGPN--GRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GY 250 (388)
T ss_pred ccccCCCCc---CCHHHHHHHHHHhCcEEEEEccccccccCCC--CccHHHHhCCCCccceEEEEEchhhhcccC---ce
Confidence 555555554 5677999999999999999999877776631 11122222 122455899999999999888 89
Q ss_pred EEEEecChhHHHHHHHHHHHHhhc-cccC-CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIARA-MYGS-PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+.+ +.. +++.+.+..+. .+.+ .|+....++..+++.- +.....+++++++...++..++..++
T Consensus 251 v~g---~~~----~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l-------~~~~~~r~~L~~~~~~~~~~~~~~~~- 315 (388)
T COG0156 251 IAG---SAA----LIDYLRNRARPFIFSTALPPAVAAAALAALRIL-------EEGPERRERLQELAAFFRSLLKALGL- 315 (388)
T ss_pred eeC---cHH----HHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 854 888 88877776553 3332 3333333344444321 33456778888888888877777664
Q ss_pred CCccccccCcceeE-ecCC---CHHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 360 LNWEHITNQLGMFC-FSGL---TPYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 360 ~~~~~~~~~~g~~~-~~~~---~~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
...+....+.. .++- ..+....+++ .||.+.+. | |++++. .++++|+.+++.|.++
T Consensus 316 ---~~~~s~s~I~pv~~gd~~~a~~~s~~l~~-~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 316 ---VLLPSESPIIPVILGDEERALEASRALLE-EGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ---ccCCCCCCeeeeEeCCHHHHHHHHHHHHH-CCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 23333333332 2233 2234466665 49999754 3 888743 4888898888887764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-18 Score=166.00 Aligned_cols=155 Identities=13% Similarity=0.086 Sum_probs=123.2
Q ss_pred ccH---HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCC
Q 013839 93 VST---KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIP 166 (435)
Q Consensus 93 g~~---~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~ 166 (435)
|.| .|.+.++++..+.+ .+ .+++|+.|+..+ +.+++++||+|+++++.|+.+.. .+...|++
T Consensus 45 g~p~~~~lE~~la~leg~~~-------~v---~~ssG~~Ai~~~--l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~ 112 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVG-------TV---CFATGMAAIAAV--FLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVE 112 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCe-------EE---EeCCHHHHHHHH--HHHHcCCCCEEEECCCccccHHHHHHHHHhcCCE
Confidence 666 88888888874332 23 577889998887 77788999999999999976543 45668888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc-CCCC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA-SGDL 245 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~-~~~~ 245 (435)
++.++. .|++++++++. +++++|++++|+||||.+ .++++|+++|+++|+++|+|++|.... +++
T Consensus 113 v~~v~~-------~d~e~l~~~l~---~~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~~~~- 178 (397)
T PRK05939 113 VTMVDA-------TDVQNVAAAIR---PNTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWLFRP- 178 (397)
T ss_pred EEEECC-------CCHHHHHHhCC---CCCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccccCc-
Confidence 888764 27899999997 688999999999999987 578899999999999999999974321 111
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
...+.++++.|+||.++..|.++|++++
T Consensus 179 -----------~~~gaDivv~S~sK~~~g~g~~igg~v~ 206 (397)
T PRK05939 179 -----------KDVGASLVINSLSKYIAGHGNALGGAVT 206 (397)
T ss_pred -----------cccCCEEEEecCeecccCCCCeEEEEEe
Confidence 1124689999999999989999999864
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=167.60 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=179.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 169 (435)
...|++.++++.... +.+ .+.+|+.|+.++ +. ++.+||+|++++|.|++.. ..++..|++++.
T Consensus 56 ~~~le~~lA~l~g~~-------~~v---~~~sG~~ai~~~--l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~ 122 (390)
T PRK08064 56 REALEDIIAELEGGT-------KGF---AFASGMAAISTA--FL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTF 122 (390)
T ss_pred HHHHHHHHHHHhCCC-------CeE---EECCHHHHHHHH--HH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEE
Confidence 468888998887322 233 467788887766 44 6789999999999997443 345568988888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|++.+++.++ +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 123 v~~-------~d~~~l~~~l~---~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~----- 184 (390)
T PRK08064 123 VDM-------TNLEEVAQNIK---PNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK----- 184 (390)
T ss_pred ECC-------CCHHHHHHhcC---CCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC-----
Confidence 865 16889988887 67899999999999999864 5688999999999999999986543211
Q ss_pred HHHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ + ...++++.|++|.++ .+|...|+++ .++++ +++.++..........+...... .+..-
T Consensus 185 -~~----~-~g~Divv~S~tK~~~G~~~~laG~~v--~~~~~----~~~~l~~~~~~~g~~~~~~~a~l---~~~gl--- 246 (390)
T PRK08064 185 -PL----D-LGADVVLHSATKFLAGHSDVLAGLAV--VKDEE----LAQKLYFLQNSFGAVLGVQDCWL---VLRGL--- 246 (390)
T ss_pred -ch----h-hCCcEEEeecceeccCCccceeEEEE--eCCHH----HHHHHHHHHHhcCCCCCHHHHHH---HHccc---
Confidence 11 1 134688999999985 3344567775 33667 77777765543333333332222 22221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----------Ccccc----ccCcceeEecCCCHHHHHHHhhhccEE-
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL-----------NWEHI----TNQLGMFCFSGLTPYQVDRLAKEFHIY- 392 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----------~~~~~----~~~~g~~~~~~~~~~~~~~ll~~~gI~- 392 (435)
+.+....++..++...+.+.|++++.-. +.... ...+|++.+.=-+.+.+.++++..++.
T Consensus 247 ----~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~ 322 (390)
T PRK08064 247 ----KTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPV 322 (390)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcce
Confidence 3355666677777788888888765210 01111 123444443211344556666666662
Q ss_pred --EeCC-----------------------------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 393 --MTQD-----------------------------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 393 --i~pg-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.-| | |+|++- |+.+.+++.|.+++++..+
T Consensus 323 ~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl---e~~~dli~dl~~Al~~~~~ 385 (390)
T PRK08064 323 FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL---ENVDDLIADFEQALSYVEE 385 (390)
T ss_pred EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhccc
Confidence 2212 1 999855 6778888888888876543
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=167.95 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=121.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 169 (435)
...|.+.++++..+. . ++++++|++|+.++ +.+++.+||+|+++.+.|++.. ..++..|++++.
T Consensus 66 ~~~Le~~lA~leg~~--------~--al~~~sG~~Ai~~a--l~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~ 133 (431)
T PRK08248 66 TDVFEKRIAALEGGI--------G--ALAVSSGQAAITYS--ILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKF 133 (431)
T ss_pred HHHHHHHHHHHhCCC--------c--EEEECCHHHHHHHH--HHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEE
Confidence 467888888887432 2 33699999999888 7778899999999999886543 345678988888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|+++++++++ +++++|++++|+||||.+.+. ++|+++|+++|+++|+|++|..- .. .
T Consensus 134 vd~-------~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~di---~~I~~la~~~gi~vIvD~t~a~~-~~-----~ 194 (431)
T PRK08248 134 VDP-------SDPENFEAAIT---DKTKALFAETIGNPKGDVLDI---EAVAAIAHEHGIPLIVDNTFASP-YL-----L 194 (431)
T ss_pred ECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEeCCCCcc-cc-----C
Confidence 865 27889999887 678999999999999999875 58999999999999999997521 11 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.++ + ...++++.|++|.+|.+|.++|++++
T Consensus 195 ~pl----~-~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 195 RPI----E-HGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred Chh----H-cCCCEEEEcCccccCCCCCceEEEEE
Confidence 122 1 24578899999999999999999874
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=167.50 Aligned_cols=157 Identities=16% Similarity=0.091 Sum_probs=118.0
Q ss_pred CCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
++++ +++||++|+.++ +.++ +.|||+|++++|+|..+...+...|++++.+++ +++++.+|+++++++++ +
T Consensus 47 ~~~v--~~~sgt~aL~~~--l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~-d~~~~~~d~~~le~~i~---~ 118 (376)
T TIGR02379 47 KKAL--LTPSCTAALEMA--ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI-RPDTMNIDETLIESAIT---H 118 (376)
T ss_pred CeEE--EeCCHHHHHHHH--HHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhcC---c
Confidence 3666 899999998887 5555 789999999999999999888999999999998 45668899999999987 6
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc-CCCCcccHHHHHHhhhcCCeEEEEecc--ccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA-SGDLDKDAQAIRIFLEDEHLIGCAQSY--AKS 271 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~ 271 (435)
++++|+ |+||||...+ +++|.++|++||++||+|+++.... +++. .+..+ + .+.+.|| +|.
T Consensus 119 ~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~-----~~g~~---~--~~~~fSf~~~K~ 182 (376)
T TIGR02379 119 RTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGR-----ALGSI---G--HLGTFSFHETKN 182 (376)
T ss_pred CceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCc-----ccCCC---C--CEEEEeCCCCCc
Confidence 788876 5789998765 5599999999999999999976654 3321 11011 1 2223332 388
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
+. +|.+.|+++ +.+++ +.++++.+.
T Consensus 183 l~-~g~~gG~v~--~~~~~----~~~~~~~~~ 207 (376)
T TIGR02379 183 YT-SGGEGGALL--INDQA----FIERAEIIR 207 (376)
T ss_pred Cc-ccCCceEEE--ECCHH----HHHHHHHHH
Confidence 86 777889985 54677 666555543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-18 Score=167.92 Aligned_cols=331 Identities=10% Similarity=0.043 Sum_probs=204.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|+..|.. ..+--...+++++++.+++... ....+ ...-..++.+.+++++ +. +.+. ++++
T Consensus 35 ~g~~~lD~~s~~~-~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~~-------~~~~--~~~S 102 (401)
T TIGR01885 35 EGKRYLDFLSAYS-AVNQGHCHPKIVKALTEQAQKLTLSSRAF-YNDVFGEFAEYVTKLF-GY-------DKVL--PMNT 102 (401)
T ss_pred CCCEEEEcccCHh-hccCCCCCHHHHHHHHHHHHhcccccccc-CCHHHHHHHHHHHhhc-CC-------CEEE--EeCc
Confidence 5678899988742 2110011233444444443311 01111 2233456666666664 22 2555 8999
Q ss_pred chhHHHHHHHHHHHh-------CCC-CEEEEcCCCChhh-HHHHhhCC---------C---CeeeeeecCCCCCCcChHh
Q 013839 126 GTGACRLFAEFQRRF-------HPE-SHIYFPDPTWSNH-HNIWRDAQ---------I---PERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 126 g~~a~~~~~~~~~~~-------~~g-d~Vlv~~p~y~~~-~~~~~~~g---------~---~~~~v~~~~~~~~~~d~e~ 184 (435)
|++|+..+..+.... .+| ++|+...-+|.+. ...+...+ . .+..++. .|+++
T Consensus 103 Gs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 175 (401)
T TIGR01885 103 GAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEA 175 (401)
T ss_pred cHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHH
Confidence 999999986544332 233 5677777777653 23233222 1 1122221 27889
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEE-QWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+++.+.+.+++..++++..+++++|...+.+ .+++|.++|++|++++|+||+|.++++.+ ..... ...+....++
T Consensus 176 le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G---~~~~~-~~~~~~~di~ 251 (401)
T TIGR01885 176 LEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG---KLLCV-DHENVKPDIV 251 (401)
T ss_pred HHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHH-hhcCCCCCEE
Confidence 9998875545678888989999999988644 69999999999999999999998776543 11222 2222223333
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
++||.++..|+|+|++++ +++ +++.+.......+.+.+++++.++.++|+... + ....++.+
T Consensus 252 ---~~gK~l~~g~~~ig~v~~---~~~----i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~------~--~~l~~~~~ 313 (401)
T TIGR01885 252 ---LLGKALSGGVYPVSAVLA---DDD----VMLTIKPGEHGSTYGGNPLACAVAVAALEVLE------E--EKLAENAE 313 (401)
T ss_pred ---EeeccccCCCCCcEEEEE---cHH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence 467999866699999964 777 77766542233455667888888877775321 1 13446677
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeE-ecCCC-----HHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFC-FSGLT-----PYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYL 412 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~-----~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~ 412 (435)
++.+++.+.|++++.+ .+....+.+.++. +++.+ ...+...+.++||.+.|.+ ||+.. ..++++++++
T Consensus 314 ~~~~~~~~~L~~l~~~-~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~ 392 (401)
T TIGR01885 314 KLGEIFRDQLKKLPKP-IITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEG 392 (401)
T ss_pred HHHHHHHHHHHhccCC-ceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHH
Confidence 7788999999888532 1122345565555 23322 2334333457899998874 88753 3588999999
Q ss_pred HHHHHHHH
Q 013839 413 ANAIHEVT 420 (435)
Q Consensus 413 ~~~l~~~l 420 (435)
+++|.+++
T Consensus 393 l~~l~~~l 400 (401)
T TIGR01885 393 LEIIKKVI 400 (401)
T ss_pred HHHHHHHh
Confidence 99998875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=170.83 Aligned_cols=255 Identities=16% Similarity=0.154 Sum_probs=169.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCC-CEEEEcCCCChhhH---HHHhhCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPE-SHIYFPDPTWSNHH---NIWRDAQI 165 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~g-d~Vlv~~p~y~~~~---~~~~~~g~ 165 (435)
..++|+.+++++ +.. +++++ ++.|+++++.++ +..+. .+| +.|++....|+.+. ..++..|+
T Consensus 44 ~~~~r~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~ 113 (353)
T TIGR03235 44 VERARKQVAEAL-GAD-----TEEVI--FTSGATESNNLA--ILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGF 113 (353)
T ss_pred HHHHHHHHHHHh-CCC-----CCeEE--EeCCHHHHHHHH--HHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCC
Confidence 467888899887 332 45777 899999998887 44333 356 77888876665443 34556799
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. ++++.+|++++++.++ ++++++++++++||||..++ +++|.++|+++|+++++|+++. +...+.
T Consensus 114 ~v~~v~~--~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~-~g~~~~ 184 (353)
T TIGR03235 114 TVTYLPV--DESGRIDVDELADAIR---PDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQV-VGKITV 184 (353)
T ss_pred EEEEEcc--CCCCcCCHHHHHHhCC---CCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhh-cCCccc
Confidence 9999987 3456799999999987 57899999999999999987 4689999999999999999953 221111
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH--HHHH-------hhccccCCChhHHH
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ--IQQI-------ARAMYGSPPVHGIL 316 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~--l~~~-------~~~~~~~~~~~~q~ 316 (435)
++ ...+-++++.|.+|.+|.+| +|++++ +++ .... +... .+.....++.....
T Consensus 185 -----~~----~~~~~D~~~~s~~K~~gp~g--~g~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 246 (353)
T TIGR03235 185 -----DL----SADRIDLISCSGHKIYGPKG--IGALVI---RKR----GKPKAPLKPIMFGGGQERGLRPGTLPVHLIV 246 (353)
T ss_pred -----cc----cccCCCEEEeehhhcCCCCc--eEEEEE---ccC----cccccccCceeeCCCCcCccccCCCChHHHH
Confidence 11 11234677788999987666 688864 444 2111 1110 00112334444445
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----cceeE--ecCCCHHHHHHHhhhcc
Q 013839 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----LGMFC--FSGLTPYQVDRLAKEFH 390 (435)
Q Consensus 317 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~ll~~~g 390 (435)
++..+++.. .+..+..+++++++++.+++.|++.|. ....+. .++.. ..+.+.+.+...|++ +
T Consensus 247 al~~al~~~------~~~~~~~~~~~~~l~~~l~~~l~~~g~----~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~ 315 (353)
T TIGR03235 247 GMGEAAEIA------RRNAQAWEVKLRAMRNQLRDALQTLGV----KLNGDPAETIPHILNFSIDGVNSEALIVNLRA-D 315 (353)
T ss_pred HHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHhccCCe----EEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-C
Confidence 555555421 245677888999999999999977653 333211 22222 235676777666664 9
Q ss_pred EEEeCC
Q 013839 391 IYMTQD 396 (435)
Q Consensus 391 I~i~pg 396 (435)
|.+.+|
T Consensus 316 i~v~~g 321 (353)
T TIGR03235 316 AAVSTG 321 (353)
T ss_pred eEEEch
Confidence 999887
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=167.41 Aligned_cols=217 Identities=14% Similarity=0.066 Sum_probs=151.1
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 169 (435)
...|.+.++++..+.+ ++.+++|+.|+.++ +++++.+||+|+++.++|.+.... +...|+++..
T Consensus 63 v~~lE~~la~leg~~~----------av~~~SG~aAi~~a--l~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~ 130 (432)
T PRK06702 63 LAAFEQKLAELEGGVG----------AVATASGQAAIMLA--VLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTF 130 (432)
T ss_pred HHHHHHHHHHHhCCCc----------EEEECCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEE
Confidence 5678888888874432 33799999999988 777889999999999999866665 6778998888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .+|+++++++++ ++|++|++.+|+||++.+.+ +++|+++|++||+++|+|++|..-
T Consensus 131 vd~------~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP--------- 189 (432)
T PRK06702 131 FNP------NLTADEIVALAN---DKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATP--------- 189 (432)
T ss_pred ECC------CCCHHHHHHhCC---cCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCch---------
Confidence 743 368899999998 78999999999999998876 669999999999999999997311
Q ss_pred HHHHHhhhcCCeEEEEecccc-----cccccCCcc-----cEEEEEecChhHH-----------------HHHHHHHH-H
Q 013839 250 QAIRIFLEDEHLIGCAQSYAK-----SMGLYGHRV-----GCLSILCVDSKQA-----------------AAIRSQIQ-Q 301 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK-----~~g~~G~Rv-----G~~~~~~~~~~~~-----------------~~~~~~l~-~ 301 (435)
.... +-...-.|++.|+|| ..++.|.++ +|.. +.+.+.. ..+..+.+ .
T Consensus 190 -~~~~-pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (432)
T PRK06702 190 -YLCQ-AFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTN--GKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ 265 (432)
T ss_pred -hhCC-hhhcCCCEEEEccccccCCCcceeceEEEeCCCccccc--ccccccccccccccccchhhccchhhHHHHHHHH
Confidence 1111 111234699999999 556666665 4542 1112200 00111111 1
Q ss_pred HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 302 IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 302 ~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
..+.....++.+..+.+...|+. +....++..++...+.+.|+..+
T Consensus 266 ~~~~~g~~~sp~~a~l~~rgL~T----------l~lR~~r~~~Na~~la~~L~~~p 311 (432)
T PRK06702 266 LLRDYGNCMSPFNAYISNIGLET----------LHLRMERHSENALAVAKWLADHE 311 (432)
T ss_pred HHHHccCCCCHHHHHHHHhccCc----------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 22233346777766666666654 34444555678888888888765
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-18 Score=162.22 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=145.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 169 (435)
...|++.++++.... ..+ ++.+|+.++.++ +.++.+||+|++++|+|++... .+...|++++.
T Consensus 52 ~~~Le~~lA~l~g~~-------~~~---~~~sG~aai~~~---~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~ 118 (377)
T PRK07671 52 RAALEELIAVLEGGH-------AGF---AFGSGMAAITAV---MMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTF 118 (377)
T ss_pred HHHHHHHHHHHhCCC-------ceE---EeCCHHHHHHHH---HHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEE
Confidence 568888888887322 223 477788777654 3567899999999999984433 33457888887
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|+++++++++ +++++|++++|+||||... ++++|.++|+++|+++|+|++|....+..
T Consensus 119 v~~-------~d~~~l~~ai~---~~tklV~le~P~NPtg~~~---dl~~I~~la~~~g~~lvvD~a~~~~~~~~----- 180 (377)
T PRK07671 119 VDT-------SNLEEVEEAIR---PNTKAIYVETPTNPLLKIT---DIKKISTIAKEKGLLTIVDNTFMTPYWQS----- 180 (377)
T ss_pred ECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCCccccCC-----
Confidence 753 37899999997 6789999999999999875 56689999999999999999986533221
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ + ...++++.|+||.++.++- -.|+++ +++++ +++.++..+.......+....+.+..-+
T Consensus 181 -p~----~-~g~Divv~S~sK~l~G~~~~~~G~~v--~~~~~----l~~~~~~~~~~~g~~~~~~~a~l~~~~l------ 242 (377)
T PRK07671 181 -PI----S-LGADIVLHSATKYLGGHSDVVAGLVV--VNSPE----LAEDLHFVQNSTGGILGPQDSWLLLRGL------ 242 (377)
T ss_pred -hh----h-hCCeEEEecCcccccCCccceeEEEE--eCcHH----HHHHHHHHHHhhcCCCCHHHHHHHHcCc------
Confidence 11 1 1236999999999974443 235553 44666 7676776555443444444333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..++...+.+.|++.+
T Consensus 243 ----~tl~~R~~~~~~na~~la~~L~~~~ 267 (377)
T PRK07671 243 ----KTLGIRMEEHETNSRAIAEFLNNHP 267 (377)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2344566677788888888888764
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-18 Score=165.18 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=147.2
Q ss_pred CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----H
Q 013839 85 FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----W 160 (435)
Q Consensus 85 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~ 160 (435)
.+.|... |.| .++++.+++....+. +..+ .+++|.+|+.++ +.++.+||+|++++|.|+.+... +
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg~----e~ai--~~~SG~aAi~~i---l~ll~~GD~VI~~~~~y~~t~~ll~~~l 192 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDKA----DRAF--CFTSGMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVV 192 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhCC----CEEE--EeCcHHHHHHHH---HHHhCCCCEEEEcCCchhhHHHHHHHHH
Confidence 3557664 655 466666665333221 2333 578888887554 35688999999999999987633 4
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCc
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF 240 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~ 240 (435)
...|++++.++. .|++++++++. +++++|++++|+||||.. .++++|+++|++||+++|+|++|...
T Consensus 193 ~~~G~~v~~vd~-------~d~e~l~~ai~---~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~ 259 (464)
T PLN02509 193 PRSGVVVKRVNT-------TNLDEVAAAIG---PQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSP 259 (464)
T ss_pred HHCCeEEEEeCC-------CCHHHHHHhCC---cCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCcccc
Confidence 567888877753 36889999887 678999999999999975 77889999999999999999997433
Q ss_pred cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc-ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHH
Q 013839 241 ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR-VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVA 319 (435)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~ 319 (435)
.... ++ + ...++++.|++|.++.+|-- .|.++ +.++. +...++..+.......+....+
T Consensus 260 ~~~~------pl----~-~gaDivv~S~tK~l~G~gdv~gG~v~--~~~~~----l~~~~~~~~~~~g~~l~p~~A~--- 319 (464)
T PLN02509 260 VLSR------PL----E-LGADIVMHSATKFIAGHSDVMAGVLA--VKGEK----LAKEVYFLQNSEGSGLAPFDCW--- 319 (464)
T ss_pred ccCC------hh----h-cCCcEEEecCcccccCCCccceeEEE--eccHH----HHHHHHHHHHhcCCCcCHHHHH---
Confidence 2211 11 1 13468899999998754433 35553 33444 4444443332222223333322
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 320 TILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 320 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
..+..- +.+....++..++++.+.+.|++++
T Consensus 320 l~lr~L-------~tL~~R~~r~~~nA~~la~~L~~~p 350 (464)
T PLN02509 320 LCLRGI-------KTMALRIEKQQENARKIAMYLSSHP 350 (464)
T ss_pred HHHhhh-------hhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222221 4556677788888888889998765
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-18 Score=164.24 Aligned_cols=210 Identities=14% Similarity=0.043 Sum_probs=146.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 169 (435)
..+|++.++++....+ .+ ++.+|+.|+.++ +.+++.+||+|+++.+.|.... ..+...|++++.
T Consensus 65 ~~~le~~lA~l~g~~~-------av---~~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (389)
T PRK05968 65 VRAFEEMLAKLEGAED-------AR---GFASGMAAISST--VLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDY 132 (389)
T ss_pred HHHHHHHHHHHhCCCc-------EE---EECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEE
Confidence 5689999999874321 23 578888898877 6677899999999999997643 455667888888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|++++++++. ++++|++++ |||..++..++++|.++|++||+++|+|++|....+..
T Consensus 133 vd~-------~d~~~l~~~i~----~tklV~ie~---pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~----- 193 (389)
T PRK05968 133 VDG-------RDEEAVAKALP----GAKLLYLES---PTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR----- 193 (389)
T ss_pred eCC-------CCHHHHHHhcc----cCCEEEEEC---CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-----
Confidence 754 27888888773 467888865 55555677899999999999999999999986554321
Q ss_pred HHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhh
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
++. . ..++++.|+||.++.+| .+.|+++. +++ ++++++.... .....++.+.+..+...|+.
T Consensus 194 -p~~----~-g~Divv~S~tK~l~g~~~~~gG~i~~---~~~----~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t--- 257 (389)
T PRK05968 194 -PIT----L-GVDLVIHSASKYLGGHSDTVAGVVAG---SKE----HIARINAEAYPYLGAKLSPFEAWLLLRGLRT--- 257 (389)
T ss_pred -chh----c-CCcEEEeeccccccCCCCeEEEEEEE---CHH----HHHHHHHHHHHhCCCCCChHHHHHHHcccCc---
Confidence 111 1 23578889999998655 46787753 777 6666665433 22334555555544444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++.+.+.+.|++++
T Consensus 258 -------l~~r~~~~~~~a~~la~~L~~~p 280 (389)
T PRK05968 258 -------LPLRMKAHEASALEIARRLKAHP 280 (389)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445555666777788888765
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=170.25 Aligned_cols=332 Identities=9% Similarity=0.041 Sum_probs=199.7
Q ss_pred eeecceecCCCCCcccchHHHHHHHHhcCCCCCCC---CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 54 NLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLES---ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 54 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
-++.|.| +. .+++.+++.+.........+.| ...+|..++++++.+++....+. + +.....+.|+++.+
T Consensus 72 ~~g~G~~-~~---~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~---~-~~~l~~~~GA~a~~ 143 (481)
T PRK04366 72 FYPLGSC-TM---KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM---D-AVTLQPAAGAHGEL 143 (481)
T ss_pred eecCccc-CC---CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC---C-ceEEEeCcHHHHHH
Confidence 3666764 32 4555555555554211124557 35678889999888887333222 1 22211223333333
Q ss_pred HHHHHHH-HHhCCCC----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 131 RLFAEFQ-RRFHPES----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 131 ~~~~~~~-~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
..+..+. .++.+|| +|++++|.|+.+...++..|++++.+++ ++++.+|+++|++++. ++++++++++||
T Consensus 144 ~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~--~~~~~~D~e~L~~~i~---~~t~~V~v~~Pn 218 (481)
T PRK04366 144 TGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS--NEDGLVDLEALKAAVG---EDTAALMLTNPN 218 (481)
T ss_pred HHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec--CCCCCcCHHHHHhhcc---cCCeEEEEeCCC
Confidence 2221111 2356776 9999999999999999999999999988 3457899999999987 678899999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc----CCcccE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY----GHRVGC 281 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~----G~RvG~ 281 (435)
|||.. ..++++|+++|+++|+++++|.++..-..+.. + +...+-++++++.+|.++.| |..+|+
T Consensus 219 -~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~-----~----~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~ 286 (481)
T PRK04366 219 -TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGKA-----R----PGDMGFDVVHLNLHKTFSTPHGGGGPGSGP 286 (481)
T ss_pred -Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhcccC-----C----ccccCCCEEEEechhhcCCCCCCCCCCeee
Confidence 99954 45799999999999999999999631111100 0 11224578889999988644 445677
Q ss_pred EEEEecChhHHHHHHHHHHHH-------------------hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 282 LSILCVDSKQAAAIRSQIQQI-------------------ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+.+ .++ +.+.+... .+......+.+...++...+..-+ .+.+++..++.
T Consensus 287 l~~---~~~----~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G-----~~Gl~~~a~~~ 354 (481)
T PRK04366 287 VGV---KEE----LAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG-----AEGLREVSEDA 354 (481)
T ss_pred eee---hhh----hHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 753 555 33332100 000000111222223333332211 14456666777
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccC--cceeEec-----CCCHHHHHHHhhhccEEEe----C---CC--cEEeccC-C
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFS-----GLTPYQVDRLAKEFHIYMT----Q---DG--RISMAGV-T 405 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~-----~~~~~~~~~ll~~~gI~i~----p---gg--Ris~~~~-~ 405 (435)
.++.+++.+.|+++ .. +....+. ...|.+. +.+...+.+.|.++||.+. | .+ |++++.. +
T Consensus 355 ~~~a~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t 431 (481)
T PRK04366 355 VLNANYLKARLKDI-YD--LPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETES 431 (481)
T ss_pred HHHHHHHHHHhHhh-Cc--ccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCC
Confidence 77888999999876 21 1111111 1112221 2355556545567898875 1 22 7776432 7
Q ss_pred CCcHHHHHHHHHHHHHhhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~~ 425 (435)
.++|+++++.|+++.++..+
T Consensus 432 ~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 432 KETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999876654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-18 Score=165.53 Aligned_cols=346 Identities=13% Similarity=0.060 Sum_probs=200.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...+|+..|.-...-| -..+.+++++.+++... .+ +.......+.+..+++.+...-.. ..+.+. ++++|
T Consensus 38 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~-~~-~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~--f~~sG 110 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVG-HNNPRVVKAIKEQTDKL-IH-YTPIYGFPVEPLLLAEKLIEIAPG--DNPKVS--FGLSG 110 (443)
T ss_pred CCCCEEEEccccHhhcccC-CCCHHHHHHHHHHHHhc-cC-ccccccCcHHHHHHHHHHHHhCCC--CCCEEE--EcCCH
Confidence 4678899998884211122 12333444444555422 11 111111123334444444222111 014677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-HhhCCC------------CeeeeeecCCCC--CC--------cChH
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WRDAQI------------PERTYHYYDPDS--KS--------LDFA 183 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~------------~~~~v~~~~~~~--~~--------~d~e 183 (435)
++|++.+..+........+|+....+|.+.... +...|. .+..+|..+... +. -+++
T Consensus 111 sEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (443)
T PRK08360 111 SDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVE 190 (443)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHH
Confidence 999999976665554447788888888765322 221121 122222211000 10 1344
Q ss_pred hHHHHhhc--CCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 184 ALMDDIKN--APDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 184 ~l~~~i~~--~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
.+++.+.+ .+++++++++...+||+|.+++ .+.+++|.++|++||+++|+||+|.++...+ ..+....+ +...
T Consensus 191 ~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G---~~~a~~~~-~~~p 266 (443)
T PRK08360 191 YIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG---KWFAIEHF-GVEP 266 (443)
T ss_pred HHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---cchhhhhc-CCCC
Confidence 56666653 1356788888877899999887 5579999999999999999999999887654 12222222 2223
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
+++ ++||.++ +|+|+||+++ +++ +++.+.......+.+.+.+.+.++.+.|+.-. + ....+
T Consensus 267 Dii---tlsK~l~-~G~pigav~~---~~~----i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~------~--~~l~~ 327 (443)
T PRK08360 267 DII---TLGKPLG-GGLPISATIG---RAE----IMDSLPPLAHAFTLSGNPVASAAALAVIEEIE------E--KNLLK 327 (443)
T ss_pred CEE---Eeccccc-CCceeEEEEE---cHH----HHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHH------H--cCHHH
Confidence 333 6799999 9999999964 777 77777654334456677787888877775321 1 12345
Q ss_pred HHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC---------C---HHHHHHHhhhccEEEeCC-C---cEEec
Q 013839 341 RIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL---------T---PYQVDRLAKEFHIYMTQD-G---RISMA 402 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~---------~---~~~~~~ll~~~gI~i~pg-g---Ris~~ 402 (435)
+.+++.+++.+.|+++. .+ .+......|-++. +.+ + ...+...+.++||.+.+. + |++..
T Consensus 328 ~~~~~g~~l~~~L~~l~~~~~-~v~~vrg~Gl~~g-ie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~ 405 (443)
T PRK08360 328 RAEKLGNYTKKRLEEMKKKHE-LIGDVRGIGLMIG-VDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPP 405 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEE-EEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCC
Confidence 55555556666665431 11 1122333443332 211 1 123333345689998764 3 77543
Q ss_pred -cCCCCcHHHHHHHHHHHHHhhh
Q 013839 403 -GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 403 -~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
..+++++++++++|.++++.+.
T Consensus 406 l~~t~~~id~~~~~l~~~l~~~~ 428 (443)
T PRK08360 406 LTIEKEVLDEGLDILEEAIEDVE 428 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 2489999999999999997654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-18 Score=165.00 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=123.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~ 167 (435)
.-..+|++.++++.... ..+ ++++|+.|+..+ +.+++.+||+|+++.+.|++.. ..+...|+++
T Consensus 57 p~~~~le~~lA~l~g~~--------~~v--~~~sG~~Ai~~a--l~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v 124 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGV--------AAL--AVASGQAAITYA--ILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEV 124 (418)
T ss_pred hhHHHHHHHHHHHhCCC--------eEE--EEccHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEE
Confidence 33578999999987321 233 799999998888 7777899999999999986543 3456788888
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++. + |++.+++++. ++++++++++|+||||.+.+ +++|.++|+++|+++|+|++|......
T Consensus 125 ~~v~~---~----d~~~l~~~l~---~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~---- 187 (418)
T TIGR01326 125 RFVDP---D----DPEEFEKAID---ENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLC---- 187 (418)
T ss_pred EEECC---C----CHHHHHHhcC---cCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcC----
Confidence 88764 1 7899999887 67899999999999998875 669999999999999999998532111
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
. ++ + .+.++++.|+||.++.+|+|+||+++
T Consensus 188 ~--~l----~-~g~Divv~S~sK~l~g~G~~lGg~v~ 217 (418)
T TIGR01326 188 R--PI----D-HGADIVVHSATKYIGGHGTAIGGVIV 217 (418)
T ss_pred C--ch----h-cCCeEEEECccccccCCccceEEEEE
Confidence 0 11 1 24689999999999999999999974
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=163.44 Aligned_cols=341 Identities=13% Similarity=0.054 Sum_probs=202.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.-...-| .-.+.+++++.+++... .+ +.+.. ..+....+++.+...... .+.+. ++++|
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~-~~-~~~~~-~~~~~~~la~~L~~~~~~---~~~v~--f~~sG 107 (408)
T PRK04612 37 DQGREYLDLAAGIAVCGLG-HNDPDLVAALTEQAGKL-WH-TSNVF-YSAPPLKLAEELVTASRF---AEKVF--LCNSG 107 (408)
T ss_pred CCCCEEEEcCccHhhccCC-CCCHHHHHHHHHHHHhc-cc-ccccc-CCHHHHHHHHHHHhhCCC---CCEEE--EcCch
Confidence 4678899998774211112 12233444444554422 11 11111 122334455555322111 24677 89999
Q ss_pred hhHHHHHHHHHHHh----C--CC-CEEEEcCCCChhhHHHHhh-CCCCee---eeeecCC--CCCCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRF----H--PE-SHIYFPDPTWSNHHNIWRD-AQIPER---TYHYYDP--DSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~----~--~g-d~Vlv~~p~y~~~~~~~~~-~g~~~~---~v~~~~~--~~~~~d~e~l~~~i~~~~ 193 (435)
++|++.+..+.... . ++ .+|+....+|.+....... .|-... ..+..+. .-...|++.+++.+.
T Consensus 108 seA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--- 184 (408)
T PRK04612 108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA--- 184 (408)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC---
Confidence 99999997665544 1 22 4688888888776443221 111100 0011000 000137888888885
Q ss_pred CCcEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPT--EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~--~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
+...+.++..|.+++|-+++ .+.+++|.++|++||+++|+||+|.++...+ ..+.. ...+.+..+.++||.
T Consensus 185 ~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~a~----~~~~~~pdi~t~~K~ 257 (408)
T PRK04612 185 GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG---TLFAH----WQEQVTPDIVTLAKA 257 (408)
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---chhhh----hhcCCCCCEEEEcch
Confidence 23345555567777876655 5689999999999999999999999887654 11111 112345667899999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQ 351 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
++ +|+|+||+++ +++ +.+.+.......+.+.+++++.++.+.|+.-. + ....++.+++.+++.+
T Consensus 258 l~-~G~piga~~~---~~~----~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~------~--~~l~~~~~~~g~~l~~ 321 (408)
T PRK04612 258 LG-GGFPIGAMLA---GPK----VAETMQFGAHGTTFGGNPLAAAVARVALRKLA------S--PQIAANVARQSAALRA 321 (408)
T ss_pred hc-CCCceEEEEE---CHH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH------h--ccHHHHHHHHHHHHHH
Confidence 99 8999999964 677 66666543444556678888888888775321 1 2455666666777777
Q ss_pred HHHhhCCCC-CccccccCcceeEecCC------CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHH
Q 013839 352 NLEKLGSSL-NWEHITNQLGMFCFSGL------TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEV 419 (435)
Q Consensus 352 ~l~~~~~~~-~~~~~~~~~g~~~~~~~------~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~ 419 (435)
.|+++.... .+......|.++. +.+ ....+...+.++||.+.+.| |+... ..+++++++++++|.++
T Consensus 322 ~l~~l~~~~~~i~~vrg~Gl~~~-i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~ 400 (408)
T PRK04612 322 GLEALNAEFGVFAQVRGRGLMLG-AVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLA 400 (408)
T ss_pred HHHHHHhhCCCeeeeeccceEEE-EEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHH
Confidence 776653110 1122344443333 222 12344444567999998865 66632 34899999999999999
Q ss_pred HHhh
Q 013839 420 TRSE 423 (435)
Q Consensus 420 l~~~ 423 (435)
+.+.
T Consensus 401 l~~~ 404 (408)
T PRK04612 401 LADY 404 (408)
T ss_pred HHHH
Confidence 8764
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-18 Score=162.99 Aligned_cols=273 Identities=14% Similarity=0.081 Sum_probs=175.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 169 (435)
..+|.+.+++++.. ++.+ ++.+|+.|+.++ + .++.+||+|+++++.|...... +...|++++.
T Consensus 49 ~~~le~~la~l~g~--------~~~l--~~~sG~~al~~~--l-~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 115 (378)
T TIGR01329 49 RTALESLLAKLDKA--------DRAF--AFSSGMAALDVI--T-RLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVH 115 (378)
T ss_pred HHHHHHHHHHHhCC--------CcEE--EECCHHHHHHHH--H-HHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEE
Confidence 35677777776632 1333 578888887765 3 3679999999999999876543 4557989888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|+++++++++ ++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|......
T Consensus 116 vd~-------~d~~~le~~i~---~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~~------ 176 (378)
T TIGR01329 116 VDT-------TDLDKVKAALG---PKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLLC------ 176 (378)
T ss_pred eCC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC------
Confidence 865 27889999987 67899999999999998875 679999999999999999996332211
Q ss_pred HHHHHhhhcCCeEEEEecccccccc-cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGL-YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~-~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
.++. . .-++++.|++|.++- .+.+.|+++ +.+++ +.++++..........+....+.+..-+
T Consensus 177 ~~l~----~-g~Di~v~S~tK~l~G~~~~~~G~v~--~~~~~----~~~~~~~~~~~~G~~~~~~~a~l~~~~l------ 239 (378)
T TIGR01329 177 NPLE----L-GADIVYHSATKFLAGHSDVMAGVLA--VKGEE----IAKKVYFLQNSTGSGLAPFDCWLLLRGI------ 239 (378)
T ss_pred Chhh----c-CCcEEEEecceeccCCccceeEEEE--eCcHH----HHHHHHHHHHhcCCcCCHHHHHHHHccC------
Confidence 1221 1 236889999998753 346788886 33555 5555655443233334444332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-----------cc----cccCcceeEec-C-CC-HHHHHHHhhhcc
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW-----------EH----ITNQLGMFCFS-G-LT-PYQVDRLAKEFH 390 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----------~~----~~~~~g~~~~~-~-~~-~~~~~~ll~~~g 390 (435)
+.+....++..++...+.+.|++++.-..+ .. ....+|++.|. + .. ...+...|+..+
T Consensus 240 ----~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~ 315 (378)
T TIGR01329 240 ----KTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFS 315 (378)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcc
Confidence 234445556666666777777765421000 00 01123444443 1 11 223333346677
Q ss_pred EEEeCCC-------------------------------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 391 IYMTQDG-------------------------------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 391 I~i~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
|.+.-|| |+|++- |+.+.+++-|.++++.
T Consensus 316 i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 316 ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVT 375 (378)
T ss_pred cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 7776553 888854 7788888888888764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=160.05 Aligned_cols=193 Identities=11% Similarity=0.050 Sum_probs=137.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
++.+|++|+..+ +++++++||+|++++|.|+++.. .++..|+++..++. . +.+.++++++ ++++
T Consensus 84 ~~sSG~aAi~~~--l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~---~----~~e~l~~al~---~~Tk 151 (395)
T PRK05967 84 LVPSGLAAVTVP--FLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP---E----IGAGIAKLMR---PNTK 151 (395)
T ss_pred EECcHHHHHHHH--HHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC---C----CHHHHHHhcC---cCce
Confidence 577899999988 78889999999999999998865 45678888877743 1 3477888887 6799
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc-cC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL-YG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G 276 (435)
+|++++|+||++ ...++++|+++|+++|+++|+|++|....+.. ++ + ..-++++.|.+|.++- .+
T Consensus 152 lV~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~------pl----~-~GaDivv~S~tKy~~Gh~d 217 (395)
T PRK05967 152 VVHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYFR------PL----D-FGVDISIHAATKYPSGHSD 217 (395)
T ss_pred EEEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceecC------hh----H-cCCCEEEEecccccCCCCC
Confidence 999999999975 67789999999999999999999986533211 22 1 2456999999999642 34
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
...|+++ . +++ +.+++...........++...+.+..-+ +-+....++..++...+.+.|+++
T Consensus 218 ~~~G~v~--~-~~~----~~~~l~~~~~~~G~~~~p~da~l~~rgl----------~Tl~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 218 ILLGTVS--A-NEK----CWPQLLEAHGTLGLCAGPDDTYQILRGL----------RTMGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred eeEEEEE--c-CHH----HHHHHHHHHHHcCCCCCHHHHHHHHcCc----------ccHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456553 3 666 4454544333333445555433333333 334556677777888888888877
Q ss_pred C
Q 013839 357 G 357 (435)
Q Consensus 357 ~ 357 (435)
+
T Consensus 281 p 281 (395)
T PRK05967 281 P 281 (395)
T ss_pred C
Confidence 5
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-18 Score=163.41 Aligned_cols=157 Identities=16% Similarity=0.076 Sum_probs=116.2
Q ss_pred CCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
++++ +++||++|+.++ +.++ +++||+|+++.|+|..+...+...|++++.+++ +++++.+|+++++++++ +
T Consensus 47 ~~~v--~~~sgt~al~~~--l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~-d~~~~~~d~~~le~~i~---~ 118 (375)
T PRK11706 47 AKVL--LTPSCTAALEMA--ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI-RPDTMNIDETLIEAAIT---P 118 (375)
T ss_pred CeEE--EECCHHHHHHHH--HHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhcC---C
Confidence 3666 899999998877 4433 689999999999999999999999999999998 45667899999999987 5
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc--ccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSM 272 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~ 272 (435)
++++++++ ||||... ++++|.++|++||++||+|++|..+...+. .++..+ ..+.+.||+ |.+
T Consensus 119 ~tk~i~~~---~~~G~~~---~~~~i~~la~~~~i~vIeD~a~a~g~~~~~----~~~g~~-----~~~~~~Sf~~~K~l 183 (375)
T PRK11706 119 KTRAIVPV---HYAGVAC---EMDTIMALAKKHNLFVVEDAAQGVMSTYKG----RALGTI-----GHIGCFSFHETKNY 183 (375)
T ss_pred CCeEEEEe---CCCCCcc---CHHHHHHHHHHcCCEEEEECccccccccCC----eeeecC-----cCEEEEeCCCCccc
Confidence 67888764 5788764 467999999999999999999876652211 011111 123344443 999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
+ +|.+.++++ .+++ +.++++...
T Consensus 184 ~-~g~gG~~~~---~~~~----~~~~~~~~~ 206 (375)
T PRK11706 184 T-AGEGGALLI---NDPA----LIERAEIIR 206 (375)
T ss_pred c-ccCCeEEEE---CCHH----HHHHHHHHH
Confidence 7 588766664 3677 665555443
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-17 Score=156.47 Aligned_cols=218 Identities=11% Similarity=0.003 Sum_probs=150.1
Q ss_pred CCCCCCccc---HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH---
Q 013839 86 LESISASVS---TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--- 159 (435)
Q Consensus 86 ~~Y~~~~g~---~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--- 159 (435)
..|.. .|. ..|.+.++++..+. +++ +++||++|+.++ +.+++++||+|++++|.|.+....
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~g~~--------~~~--~~~sG~~Ai~~a--l~all~~GD~Vl~~~~~y~~t~~~~~~ 108 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELEGGA--------GCY--LYPSGLAAVTNS--ILAFVKAGDHVLMVDSAYEPTRYFCDI 108 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHhCCC--------cEE--EECcHHHHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHH
Confidence 34653 454 48999999887322 455 799999999988 777899999999999999876543
Q ss_pred -HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC
Q 013839 160 -WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ 238 (435)
Q Consensus 160 -~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~ 238 (435)
+...|+++..++. . +.+.+++.++ +++++|++++|+||+|.. .++++|+++|+++|+++|+|++|.
T Consensus 109 ~~~~~gi~v~~~d~---~----~~e~l~~~i~---~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 109 VLKRMGVDITYYDP---L----IGEDIATLIQ---PNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHhcCcEEEEECC---C----CHHHHHHhcC---CCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCc
Confidence 3456777665532 1 2277888887 679999999999999754 678899999999999999999986
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHH
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL 317 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~ 317 (435)
...... ++ ..+-+++++|++|.++-+ +...|+++ + +++ .++.+...........++...+.
T Consensus 176 ~g~~~~------pl-----~~gaDivv~S~tK~l~G~~d~~gG~v~--~-~~~----~~~~l~~~~~~~G~~l~p~~a~~ 237 (377)
T TIGR01324 176 AGLLFK------PL-----EHGVDISIQAGTKYLVGHSDIMIGTVV--A-NAR----TWDQLREHSYLMGQMVDADDAYT 237 (377)
T ss_pred cccccC------cc-----ccCceEEEecCceeccCCCCceEEEEE--e-CHH----HHHHHHHHHHHhCCCCCHHHHHH
Confidence 433211 11 124578999999998643 45567775 3 666 54545433333333344443333
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+...+ +.+....++..++...+.+.|++.+
T Consensus 238 ~~rgl----------~tl~~R~~~~~~~a~~la~~L~~~p 267 (377)
T TIGR01324 238 TLRGL----------RTLGVRLKQHQESSLAIAKWLSEQP 267 (377)
T ss_pred HHhhh----------hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333 3344556777777777888887764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=163.63 Aligned_cols=344 Identities=12% Similarity=0.003 Sum_probs=199.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.....-| ...+.+++++.+++... ....| ......+|.+.+++...+. .+.+. ++
T Consensus 40 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~q~~~~~~~~~~~~-~~~~~~~la~~L~~~~~~~------~~~v~--f~ 109 (433)
T PRK08117 40 VDGKEYLDFTSGIAVANVG-HRHPKVVQAIKEQADKLMHGPSGVI-YYESILKLAEELAEITPGG------LDCFF--FS 109 (433)
T ss_pred CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCCC------CCEEE--Ee
Confidence 3567899998884211122 12233444444444321 11112 1222345555555554111 23566 88
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCC--C-----------CeeeeeecCCCC--CC--------
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQ--I-----------PERTYHYYDPDS--KS-------- 179 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g--~-----------~~~~v~~~~~~~--~~-------- 179 (435)
++|++|+..+..+........+|+..+-+|.+...... ..+ . .+..+|..+... .+
T Consensus 110 ~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (433)
T PRK08117 110 NSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFL 189 (433)
T ss_pred CcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHH
Confidence 99999999997654444334778888888876543221 111 0 112222211000 00
Q ss_pred cChHhHHHHhhc--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh
Q 013839 180 LDFAALMDDIKN--APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256 (435)
Q Consensus 180 ~d~e~l~~~i~~--~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 256 (435)
-|++++++.+++ .+.+..+|++.....-.|... +++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 190 ~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~---~~~~~~~- 265 (433)
T PRK08117 190 ECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE---WFAAQTF- 265 (433)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc---chhHhhc-
Confidence 155667777653 234577888877666677765 788899999999999999999999998766541 1111111
Q ss_pred hcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+. ..-+.++||.+| .|+++|++++ +++ +++.+.......+.+.+++++.++.+.|+.-. + .
T Consensus 266 gv---~pDi~t~sK~lg-~G~pigav~~---~~~----i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~------~--~ 326 (433)
T PRK08117 266 GV---VPDIMTIAKGIA-SGLPLSAVVA---SKE----LMEQWPLGSHGTTFGGNPVACAAALATLEVIK------E--E 326 (433)
T ss_pred CC---CCCEeehhhhcc-CCCcceeEEE---cHH----HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH------h--c
Confidence 11 112468999999 8999999964 777 76666543334455678888888878775321 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------C---HHHHHHHhhhccEEEeCCC------cEE
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------T---PYQVDRLAKEFHIYMTQDG------RIS 400 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~---~~~~~~ll~~~gI~i~pgg------Ris 400 (435)
...++++++.+++.+.|+++..........+..|.+..+.+ + ...+.+.+.++||.+.+.| ||+
T Consensus 327 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~ 406 (433)
T PRK08117 327 KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMI 406 (433)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEe
Confidence 34445555566666666554210001111223344443322 1 2234344456899987642 787
Q ss_pred e-ccCCCCcHHHHHHHHHHHHHhh
Q 013839 401 M-AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 401 ~-~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ...+++++++++++|.+++++.
T Consensus 407 p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 407 PPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Confidence 5 2348999999999999998765
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-17 Score=158.03 Aligned_cols=212 Identities=14% Similarity=0.079 Sum_probs=139.8
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 169 (435)
...|.+.++++.... ..+ .+.+|+.|+.++ +.++.|||+|++++|.|++... .+...|++++.
T Consensus 52 ~~~Le~~la~l~g~~-------~al---~~~SG~~Al~~~---l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~ 118 (380)
T PRK06176 52 RFALEELIADLEGGV-------KGF---AFASGLAGIHAV---FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTI 118 (380)
T ss_pred HHHHHHHHHHHhCCC-------CEE---EECCHHHHHHHH---HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEE
Confidence 567888888886322 123 578888888755 3567999999999999976643 34556777766
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|+++++++++ +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 119 vd~-------~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~----- 180 (380)
T PRK06176 119 IDT-------SDLSQIKKAIK---PNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN----- 180 (380)
T ss_pred cCC-------CCHHHHHHhcC---cCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC-----
Confidence 643 37899999887 67899999999999999875 5689999999999999999987543221
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
++ + ...++++.|++|.++.+|..+|.++ ++.+++ +.++++..+.......+....+.+..-+.
T Consensus 181 -p~----~-~gaDivv~S~tK~l~g~~d~~gG~v-v~~~~~----~~~~~~~~~~~~G~~~~~~~~~l~~~gl~------ 243 (380)
T PRK06176 181 -PL----L-LGADIVVHSGTKYLGGHSDVVAGLV-TTNNEA----LAQEIAFFQNAIGGVLGPQDSWLLQRGIK------ 243 (380)
T ss_pred -cc----c-cCCCEEEecCceeccCCccceeeEE-EecHHH----HHHHHHHHHHHhcCCCCHHHHHHHHhccC------
Confidence 11 1 1346889999999976665444443 243555 55555554443333333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++...+.+.|+..+
T Consensus 244 ----tl~~R~~~~~~~a~~la~~L~~~p 267 (380)
T PRK06176 244 ----TLGLRMEAHQKNALCVAEFLEKHP 267 (380)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 223333444455566666666553
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=163.04 Aligned_cols=172 Identities=9% Similarity=-0.051 Sum_probs=128.0
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCe
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
+.|..-+.++++.+++++ +.+ +-+. +++|+++++..+ +.+++.+||+|+++.|+|......+...|+++
T Consensus 55 ~~~~g~i~~~~~~~A~~~-ga~------~~~~--~~~Gst~a~~~~--l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~ 123 (294)
T cd00615 55 LDPTGPIKEAQELAARAF-GAK------HTFF--LVNGTSSSNKAV--ILAVCGPGDKILIDRNCHKSVINGLVLSGAVP 123 (294)
T ss_pred CCCChHHHHHHHHHHHHh-CCC------CEEE--EcCcHHHHHHHH--HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEE
Confidence 334444678888888887 432 1222 588889998887 77788999999999999999888889999998
Q ss_pred eeeeecCCCC----CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccC
Q 013839 168 RTYHYYDPDS----KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FAS 242 (435)
Q Consensus 168 ~~v~~~~~~~----~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~ 242 (435)
+.++....++ +.+|++++++++++. ++++++++++| ||||.+++ +++|+++|+++|+++|+|++|.. +.+
T Consensus 124 ~~v~~~~~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~ 198 (294)
T cd00615 124 VYLKPERNPYYGIAGGIPPETFKKALIEH-PDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRF 198 (294)
T ss_pred EEecCccCcccCcCCCCCHHHHHHHHHhC-CCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhcc
Confidence 8886632222 378999999999753 46788888888 79999886 56999999999999999999864 333
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
.+. -.... ...+.++++.|++|++ +|++.|+++
T Consensus 199 ~~~--~~~~~----~~~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 199 HPI--LPSSA----AMAGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred Ccc--cCcch----hhcCCcEEEEchhccc--chHhHHHHH
Confidence 221 00011 1235689999999985 678766554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-17 Score=159.10 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=118.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh----CCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD----AQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~ 169 (435)
...|.+.++++.... ..+ ++++|++|+.++ +.+++.+||+|+++.+.|.+....+.. .|+++..
T Consensus 60 ~~~Le~~lA~l~g~~--------~~l--~~ssG~~Ai~~a--l~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~ 127 (425)
T PRK06084 60 NDVLEQRVAALEGGV--------GAL--AVASGMAAITYA--IQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRF 127 (425)
T ss_pred HHHHHHHHHHHhCCC--------cee--EehhHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEE
Confidence 468888888887322 223 689999999888 777789999999999999865544432 3544444
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|++++++++. +++++|++++|+||||.+++ +++|.++|+++++++|+|++|......
T Consensus 128 ~d~-------~d~e~le~ai~---~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~------ 188 (425)
T PRK06084 128 AAH-------DDIAALEALID---ERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC------ 188 (425)
T ss_pred ECC-------CCHHHHHHHhc---cCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC------
Confidence 432 48899999997 57899999999999999987 569999999999999999998633211
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.++ + ..-++++.|++|.++.+|.++|.+++
T Consensus 189 ~p~----~-~gaDivv~S~tK~l~G~g~~~gG~v~ 218 (425)
T PRK06084 189 RPF----E-HGADIVVHSLTKYIGGHGTSIGGIVV 218 (425)
T ss_pred Chh----h-cCCCEEEECchhcccccccceeEEEE
Confidence 111 1 13469999999999989999998864
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=162.10 Aligned_cols=257 Identities=15% Similarity=0.089 Sum_probs=167.2
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHH--HHHhCCCCEEEEcCCCChhhHHH---HhhCCCCee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF--QRRFHPESHIYFPDPTWSNHHNI---WRDAQIPER 168 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~--~~~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~ 168 (435)
..++|+.+++++ +.. ++++. ++.|+++++.+++.. ...+.+||+|++....|+.+... +...|++++
T Consensus 45 ~~~~r~~la~~~-g~~-----~~~v~--~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~ 116 (364)
T PLN02651 45 VEKARAQVAALI-GAD-----PKEII--FTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVT 116 (364)
T ss_pred HHHHHHHHHHHh-CCC-----CCeEE--EeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEE
Confidence 457788888877 332 45777 899999998877422 22346899999998777665433 345688888
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. ++++.+|+++++++++ ++++++++++++||||...+ +++|.++|+++|+++++|.++.... .+.
T Consensus 117 ~v~~--~~~~~~d~~~l~~~i~---~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~-~~~--- 184 (364)
T PLN02651 117 YLPV--KSDGLVDLDELAAAIR---PDTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAVGK-IPV--- 184 (364)
T ss_pred EEcc--CCCCcCCHHHHHHhcC---CCcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhhCC-ccc---
Confidence 8887 3456789999999997 67899999999999999876 5589999999999999999954322 111
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVATI 321 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~~ 321 (435)
.+ +..+-++++.|..|.+|.+| +|++.+ +++ ....+.... .....+++..+..++.++
T Consensus 185 --~~----~~~~~D~~~~s~hK~~gp~G--~g~l~v---~~~----~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~a 249 (364)
T PLN02651 185 --DV----DDLGVDLMSISGHKIYGPKG--VGALYV---RRR----PRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAA 249 (364)
T ss_pred --Cc----ccCCCCEEEechhhhCCCCc--eEEEEE---cCC----CCCCCCccccCCCccCCccCCCccHHHHHHHHHH
Confidence 11 22245788899999765444 677764 444 222221110 112334555656666666
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccccc---C---cceeE--ecCCCHHHHHHHhhhccEE
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHITN---Q---LGMFC--FSGLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~---~---~g~~~--~~~~~~~~~~~ll~~~gI~ 392 (435)
|+.- .+..+..+++.++.++++.+.|++ ++ ++....+ . .+... ..+.+.+.+...|++ |.
T Consensus 250 l~~~------~~~~~~i~~~~~~l~~~l~~~l~~~~~---~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~ 318 (364)
T PLN02651 250 CELA------MKEMDYDEKHMKALRERLLNGLRAKLG---GVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE--VA 318 (364)
T ss_pred HHHH------HHhHHHHHHHHHHHHHHHHHHHHhhCC---CEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC--EE
Confidence 6432 133466778888888888888875 32 1333332 1 22322 346677766555554 77
Q ss_pred EeCC
Q 013839 393 MTQD 396 (435)
Q Consensus 393 i~pg 396 (435)
+..|
T Consensus 319 v~~g 322 (364)
T PLN02651 319 VSSG 322 (364)
T ss_pred EEch
Confidence 7543
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-16 Score=154.73 Aligned_cols=193 Identities=15% Similarity=0.085 Sum_probs=132.1
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEc
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFP 149 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~ 149 (435)
+.+..+.+.+..+ . |.......++++++++++... +.+ .+++|++|+.++ +.++ +.+||+|+++
T Consensus 11 ~~~~~v~~~~~~~-~--~~~g~~~~~le~~la~~~g~~--------~~v--~~~sgt~al~~~--l~al~~~~Gd~Viv~ 75 (380)
T TIGR03588 11 DDIDAVVEVLKSD-F--LTQGPTVPAFEEALAEYVGAK--------YAV--AFNSATSALHIA--CLALGVGPGDRVWTT 75 (380)
T ss_pred HHHHHHHHHHhcC-C--ccCChhHHHHHHHHHHHHCCC--------eEE--EEcCHHHHHHHH--HHHcCCCCCCEEEeC
Confidence 3344444444333 2 333345789999999998432 223 577899999888 6666 7899999999
Q ss_pred CCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 013839 150 DPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 150 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 228 (435)
+|+|..+...++..|++++.+++ +++++.+|++++++.+++.+ ++++++++ .|++|... ++++|.++|++||
T Consensus 76 ~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~---~~~~i~~l~~~~~ 148 (380)
T TIGR03588 76 PITFVATANCALYCGAKVDFVDI-DPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSV---DMQAIAALAKKHG 148 (380)
T ss_pred CcchHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccC---CHHHHHHHHHHcC
Confidence 99999999889999999999998 45567899999999997321 35677775 56788764 4679999999999
Q ss_pred ceeeeeccCCCcc-CCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 229 HFPFFDMAYQGFA-SGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 229 ~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
++||+|+++.... +++ . .+... +.+ ++.+.|++ |.++. | ..|.++ +.+++ +.++++.
T Consensus 149 ~~lI~D~a~a~g~~~~~---~--~~g~~-~~~--d~~~~S~~~~K~~~~-~-~GG~v~--~~~~~----~~~~~~~ 208 (380)
T TIGR03588 149 LKIIEDASHALGAEYGG---K--PVGNC-RYA--DATVFSFHPVKIITT-A-EGGAVT--TNDEE----LAERMRL 208 (380)
T ss_pred CEEEEECCCcccCccCC---E--eCCCc-ccc--ceEEEecCCCCcccc-c-CceEEE--ECCHH----HHHHHHH
Confidence 9999999975432 221 0 11110 112 45566654 88863 3 345664 54676 5555554
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-17 Score=156.09 Aligned_cols=275 Identities=19% Similarity=0.172 Sum_probs=188.8
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH---hCCCCEEEEcCCCChhhH----HHHhhCCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR---FHPESHIYFPDPTWSNHH----NIWRDAQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~~gd~Vlv~~p~y~~~~----~~~~~~g~~ 166 (435)
..+.|+.+++++.... +++|+ ++.+++.++..+ +..+ +.+||+|++.+-.|+... ...+..|++
T Consensus 45 ~~~~r~~la~~lg~~~-----~~~v~--~~~~~t~a~~~~--~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 115 (371)
T PF00266_consen 45 LEEAREALAKLLGAPP-----DEEVV--FTSNGTEALNAV--ASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAE 115 (371)
T ss_dssp HHHHHHHHHHHHTSST-----TEEEE--EESSHHHHHHHH--HHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhcCCcc-----ccccc--cccccchhhhhh--hhccccccccccccccccccccccccccccccccchhh
Confidence 4578888999884331 14677 899999999998 4544 789999999998887665 233467889
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
+..++. +.+..+|++++++.+. +++++++++..+|-||...+. ++|.++|+++++++++|.+.. +...+.
T Consensus 116 v~~i~~--~~~~~~~~~~~~~~l~---~~~~lv~~~~~~~~tG~~~pi---~~I~~~~~~~~~~~~vD~~~~-~g~~~i- 185 (371)
T PF00266_consen 116 VRVIPA--DPGGSLDLEDLEEALN---PDTRLVSISHVENSTGVRNPI---EEIAKLAHEYGALLVVDAAQS-AGCVPI- 185 (371)
T ss_dssp EEEEEE--GTTSSCSHHHHHHHHH---TTESEEEEESBETTTTBBSSH---HHHHHHHHHTTSEEEEE-TTT-TTTSS--
T ss_pred hccccc--cccchhhhhhhhhhhc---cccceEEeecccccccEEeee---ceehhhhhccCCceeEechhc-cccccc-
Confidence 988887 3345889999999998 789999999999999998875 489999999999999999943 333222
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh---------------------c
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR---------------------A 305 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~---------------------~ 305 (435)
.+ +..+-++++.|..|.+|.+| +|++.+ +++ .++.++.... .
T Consensus 186 ----d~----~~~~~D~~~~s~~Kl~gp~G--~g~l~v---~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (371)
T PF00266_consen 186 ----DL----DELGADFLVFSSHKLGGPPG--LGFLYV---RPE----AIERLRPAKPGGGYLDFPSLQEYGLADDARRF 248 (371)
T ss_dssp -----T----TTTTESEEEEESTSTTSSST--EEEEEE---EHH----HHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGS
T ss_pred ----cc----cccccceeeecccccCCCCc--hhhhee---hhh----hhhccccccccccccccccchhcccccccccc
Confidence 11 22345788999999666566 688865 777 4444432111 0
Q ss_pred cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-----cCcceeE--ecCCC
Q 013839 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-----NQLGMFC--FSGLT 378 (435)
Q Consensus 306 ~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~g~~~--~~~~~ 378 (435)
...+++.....++..+++.- .+...++.+++..++.+++.+.|++++. +.+.. ...+... +.+.+
T Consensus 249 ~~GT~~~~~~~~l~~al~~~-----~~~g~~~i~~~~~~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~ 320 (371)
T PF00266_consen 249 EGGTPNVPAIYALNEALKLL-----EEIGIERIRERIRELAEYLREALEELPG---IEVLGPDDEPRRPSIVSFNLPGSD 320 (371)
T ss_dssp SSSS--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTT---EEESSSSCGGBGTTEEEEEETTSS
T ss_pred cccceeeehhhhHHHHHhhh-----hccccccchhhhhhHHHHHHhhhhcCCc---eeEeeecccccccceEEEeecCCC
Confidence 11245555455555555321 1245678888999999999999998864 33322 2233333 33677
Q ss_pred HHHHHHHhhhccEEEeCC--------------C--cEEeccC-CCCcHHHH
Q 013839 379 PYQVDRLAKEFHIYMTQD--------------G--RISMAGV-TTGNVNYL 412 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg--------------g--Ris~~~~-~~e~i~~~ 412 (435)
.+.+...|++.||.+..| | |+|+... +.+|++++
T Consensus 321 ~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 321 ADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 777766777789999874 2 9997543 66777654
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=157.20 Aligned_cols=344 Identities=13% Similarity=0.085 Sum_probs=197.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...+|+..|.....-| ...+.+++++.+++.... ...+.+.....++-+.+++...+.. .+++. +++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~v~--f~~ 108 (425)
T PRK07495 37 KEGRRYIDFAAGIAVVNTG-HRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDF-----AKKTI--FVT 108 (425)
T ss_pred CCCCEEEEccccHHhhccC-CCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCC-----CCEEE--ECC
Confidence 4678899998874211112 122334444444443211 1111122222344444444432110 13677 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCC-------------CeeeeeecCCCCCCcC----hHhHH
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQI-------------PERTYHYYDPDSKSLD----FAALM 186 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~d----~e~l~ 186 (435)
+|++|++.+..+........+|+....+|.+....... .|. .++.+|..+. ..+.+ ++.++
T Consensus 109 SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~l~ 187 (425)
T PRK07495 109 TGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE-LHGVSVEQSLAALD 187 (425)
T ss_pred chHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc-cccccHHHHHHHHH
Confidence 99999999976655554447899888888776432211 110 1223333111 11233 44556
Q ss_pred HHhhc--CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 187 DDIKN--APDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 187 ~~i~~--~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+.+.+ .+.+.+++++...+.-+|. .++.+.+++|.++|++||+++|+||+|.+|...+. .+... ..+...
T Consensus 188 ~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~---~~a~~----~~gv~p 260 (425)
T PRK07495 188 KLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAME----HHEVAA 260 (425)
T ss_pred HHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC---ceeec----ccCCCC
Confidence 66642 2244666666544333884 57899999999999999999999999988866541 11111 112233
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
-+.++||.++ .|+++|++++ +++ +.+.+.......+.+.+++++.++.+.++.-. + ....++.+
T Consensus 261 Di~tlsK~l~-~G~pigav~~---~~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~------~--~~l~~~~~ 324 (425)
T PRK07495 261 DLTTMAKGLA-GGFPLAAVTG---RAE----IMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIE------E--EDLCERAN 324 (425)
T ss_pred CEEeehhhhc-CCccceEEEE---cHH----HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH------h--chHHHHHH
Confidence 4688999998 8999999974 777 77666543344566778888886666654211 0 12333444
Q ss_pred HHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC-----------HHHHHHHhhhccEEEeCC---C---cEEec-c
Q 013839 344 RKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT-----------PYQVDRLAKEFHIYMTQD---G---RISMA-G 403 (435)
Q Consensus 344 ~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gI~i~pg---g---Ris~~-~ 403 (435)
+..+++.+.|+++- .| .+..... .|++.|+.+. ...+...+.++|+.+.+. | ||... .
T Consensus 325 ~~g~~l~~~L~~l~~~~~-~i~~vrG-~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~ 402 (425)
T PRK07495 325 QLGNRLKQRLASLRETVP-EIADIRG-PGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPIT 402 (425)
T ss_pred HHHHHHHHHHHHHHhhCC-Ceeeeec-CceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCc
Confidence 44444444444331 11 1112222 3778887541 123433445689999763 2 67632 3
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+++++++++++|.+++++..
T Consensus 403 it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 403 IQDDVFAEALDILEASILEAS 423 (425)
T ss_pred cCHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999997654
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=155.34 Aligned_cols=209 Identities=12% Similarity=0.074 Sum_probs=149.5
Q ss_pred ecCCchh-HHHHHHHHHHHh--C-CCCEEEEcCCCChhhHHHHhhCCCCeeeeee-cCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTG-ACRLFAEFQRRF--H-PESHIYFPDPTWSNHHNIWRDAQIPERTYHY-YDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~-a~~~~~~~~~~~--~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+++++|+ ++.++ ++++= . +||.|+++.-++......+...|++++.++. .+++++.+|++++++++++..+++
T Consensus 128 ~v~~~Tg~al~la--L~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~ka 205 (444)
T TIGR03531 128 VVPLATGMSLSLC--LSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDN 205 (444)
T ss_pred EECCHHHHHHHHH--HHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCC
Confidence 6889984 66555 44321 2 5899999999998889999999999999985 256679999999999998432255
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh----hcCCeEEEEecccccc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL----EDEHLIGCAQSYAKSM 272 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~s~SK~~ 272 (435)
.++++.+|+ |+.....+++++|.++|++||+++|+|++|..... ....+. ..+.-.+++.|++|.+
T Consensus 206 i~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~--------~~~~~~~~g~~~Grad~vv~s~hK~l 275 (444)
T TIGR03531 206 ILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN--------KYMELINKAIKVGRVDAVVSSTDKNF 275 (444)
T ss_pred EEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh--------hhhhhhhccccccCCCeEEEeCccCC
Confidence 666665554 56656788999999999999999999999874321 111111 1112267788999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
.++|+ |+++. +.+++ +++.+.+.... ...+.+.|.+...++..+. +..+++.++..++++++.+.
T Consensus 276 ~~pg~--Gg~I~-~~d~e----l~~~i~~~y~g--~~~~s~~~~~~~~ll~~G~------~g~~~li~~~~~~a~~l~~~ 340 (444)
T TIGR03531 276 MVPVG--GAIIY-SFDEN----FIQEISKSYPG--RASASPSLDVLITLLSLGS------KGYLELLKERKEMYKYLKEL 340 (444)
T ss_pred CCCCC--EEEEE-ECCHH----HHHHHHHhccC--CCCChHHHHHHHHHHHhCH------HHHHHHHHHHHHHHHHHHHH
Confidence 98887 77663 55777 66666654322 2244567777777775543 66777888888888888888
Q ss_pred HHhhC
Q 013839 353 LEKLG 357 (435)
Q Consensus 353 l~~~~ 357 (435)
|+++.
T Consensus 341 L~~l~ 345 (444)
T TIGR03531 341 LQKLA 345 (444)
T ss_pred HHHHH
Confidence 87653
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-16 Score=153.62 Aligned_cols=200 Identities=9% Similarity=-0.016 Sum_probs=132.7
Q ss_pred eecceecCCCC-CcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHH
Q 013839 55 LGVGAYRDDKG-RPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLF 133 (435)
Q Consensus 55 l~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~ 133 (435)
|+.|.|..+.. +..+.+.+.++...+..+ ...+++ ...+|++++++++... +++ ++++|++|+.++
T Consensus 28 ~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~-~~~~G~--~~~~fe~~lA~~~g~~--------~~v--~~~sGt~al~~a 94 (438)
T PRK15407 28 FVPGKSPIPPSGKVIDAKELQNLVDASLDF-WLTTGR--FNDAFEKKLAEFLGVR--------YAL--LVNSGSSANLLA 94 (438)
T ss_pred ccCCCCCCCcCccCCCHHHHHHHHHHHHhC-cccCCh--hHHHHHHHHHHHhCCC--------eEE--EECCHHHHHHHH
Confidence 68887622211 122223344444444433 222333 2478999999998322 455 799999998887
Q ss_pred HHHHH-------HhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 134 AEFQR-------RFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 134 ~~~~~-------~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
+..+. .+.|||+|+++.|+|..+...+...|++++.+++ +.+++.+|++.+++.+. +++++|++++
T Consensus 95 L~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv-d~~~~~id~~~le~~i~---~~tkaVi~~~--- 167 (438)
T PRK15407 95 FSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV-ELPTYNIDASLLEAAVS---PKTKAIMIAH--- 167 (438)
T ss_pred HHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHHcC---cCCeEEEEeC---
Confidence 32221 2579999999999999999999999999999987 34578899999999987 6788888754
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSI 284 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~ 284 (435)
++|. +.++++|.++|++||++||+|+++........ ..+. ..+ .+.+.|| +|.+. .|. .|+++
T Consensus 168 ~~G~---p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g----~~~G---~~g--d~~~fSf~~~k~~~-~ge-GG~l~- 232 (438)
T PRK15407 168 TLGN---PFDLAAVKAFCDKHNLWLIEDNCDALGSTYDG----RMTG---TFG--DIATLSFYPAHHIT-MGE-GGAVF- 232 (438)
T ss_pred CCCC---hhhHHHHHHHHHHCCCEEEEECccchhhhcCC----eeee---ccC--ceEEEeCCCCCCcc-ccC-ceEEE-
Confidence 4554 34688999999999999999999754332110 0111 112 3445555 47675 454 37775
Q ss_pred EecChh
Q 013839 285 LCVDSK 290 (435)
Q Consensus 285 ~~~~~~ 290 (435)
+.+++
T Consensus 233 -t~d~~ 237 (438)
T PRK15407 233 -TNDPL 237 (438)
T ss_pred -ECCHH
Confidence 55665
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-16 Score=154.69 Aligned_cols=344 Identities=10% Similarity=0.001 Sum_probs=190.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCCCCcccHHHHHHHHHhHcCCCCccc-cCCCeeeEe-c
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESISASVSTKMVEESVKLVYGKDSDVV-KEGRSAGVQ-A 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~v~~~~-t 123 (435)
.+++..||+..|.-...-| ...+.+++++.+++.. +.... .....+.+..+++.+...-..+. ..+.+. + +
T Consensus 32 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~~~~~~~---~~~~~~~~~~lae~l~~~~~~~~~~~~~~~--f~~ 105 (412)
T TIGR02407 32 EDGKEYIDFFAGAGALNYG-HNNPKLKQALIDYLADDGIIHS---LDMATEAKREFLETFNEIILKPRGLDYKVQ--FPG 105 (412)
T ss_pred CCCCEEEEcccchhhccCC-CCCHHHHHHHHHHHhhccceec---cccCcHHHHHHHHHHHHhccCccCCCceEE--EeC
Confidence 3578899998875211111 2233444444455432 11111 01112334444544422100000 012343 4 5
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCC------------CeeeeeecCCCCC-CcChHhHHHHh
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQI------------PERTYHYYDPDSK-SLDFAALMDDI 189 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~~-~~d~e~l~~~i 189 (435)
++|++|++.+.++........+|+....+|.+....... .|. .+..+|..+.... .-+++.+++.+
T Consensus 106 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 185 (412)
T TIGR02407 106 PTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLL 185 (412)
T ss_pred CCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHH
Confidence 899999999976665554447899999888777543221 110 1222332110000 02466788877
Q ss_pred hcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 190 KNAP---DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 190 ~~~~---~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
.+.. ++..+|++...+++.|. ..+++.+++|.++|++||+++|+||++.+|+..+ ..+..... +.... +
T Consensus 186 ~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~~~~-~v~PD---i 258 (412)
T TIGR02407 186 EDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG---TFFSFEPA-GIEPD---I 258 (412)
T ss_pred HhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhHHhccc-CCCCC---E
Confidence 6432 35688888888899998 5689999999999999999999999998776543 11122111 21122 3
Q ss_pred eccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC----ChhhHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS----DPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 266 ~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~----~~~l~~~~~~~~~~~~~ 340 (435)
.++||.++ + |+++|++++ +++ + ..+.......+.+.+.++..++.+.++ +++ +.+++++..+
T Consensus 259 ~~~~K~lg-~~G~pigav~~---~~~----~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~----l~~~~~~~g~ 325 (412)
T TIGR02407 259 VCLSKSIS-GYGLPLALTLI---KPE----L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA----FEKAVQRKSE 325 (412)
T ss_pred EEechhcc-CCccceeEEEE---chh----h-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccH----HHHHHHHHHH
Confidence 35889998 6 999999974 665 4 333222223344555665444344332 221 2233333333
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCCC------cEEecc-CCCCcH
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQDG------RISMAG-VTTGNV 409 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pgg------Ris~~~-~~~e~i 409 (435)
+++++.+.+.+ .++. +....+..|++.|+.+. ...+...+.++||.+.+.+ ||+... .+++++
T Consensus 326 ~l~~~l~~l~~---~~~~---~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i 399 (412)
T TIGR02407 326 IIQERLDRIVA---EYPE---LIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETL 399 (412)
T ss_pred HHHHHHHHHHh---hCCC---ceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHH
Confidence 33333322222 2220 11223456788888763 2234334456899997643 776532 489999
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|.+++++
T Consensus 400 ~~~~~~l~~~l~~ 412 (412)
T TIGR02407 400 QQGLDILEQAVEE 412 (412)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=153.30 Aligned_cols=251 Identities=14% Similarity=0.052 Sum_probs=162.1
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
....++++.+++++. . ++++ ++.+|++|+.++ +..+ +.+||+|+++.++|..+...+...|++++.+
T Consensus 18 ~~~~~~~~~la~~~~-~-------~~~~--~~~sgt~al~~~--l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 85 (352)
T cd00616 18 PKVREFEKAFAEYLG-V-------KYAV--AVSSGTAALHLA--LRALGIGPGDEVIVPSFTFVATANAILLLGATPVFV 85 (352)
T ss_pred HHHHHHHHHHHHHhC-C-------CeEE--EECCHHHHHHHH--HHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEE
Confidence 457899999999983 2 1444 688999998888 5555 5799999999999999988899999999999
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. +++++.+|++++++.+. +++++++++ ||+|...+ +++|.++|+++++++|+|+++........ .
T Consensus 86 ~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~-~--- 151 (352)
T cd00616 86 DI-DPDTYNIDPELIEAAIT---PRTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG-R--- 151 (352)
T ss_pred ec-CCCcCCcCHHHHHHhcC---cCCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC-E---
Confidence 88 34468899999999886 577888874 57998765 56888999999999999999753322110 0
Q ss_pred HHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccc---------------cCCChh
Q 013839 251 AIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY---------------GSPPVH 313 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~~ 313 (435)
.+ +. ...+.+.|++ |.++ +.+.|+++ +.+++ +.+.++....... ..++.+
T Consensus 152 ~~----~~-~~d~~~~S~~~~K~~~--~~~gg~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T cd00616 152 KV----GT-FGDAGAFSFHPTKNLT--TGEGGAVV--TNDEE----LAERARLLRNHGRDRDRFKYEHEILGYNYRLSEI 218 (352)
T ss_pred Ec----cc-CcceeEEcCCCCCCCc--ccCceEEE--ECCHH----HHHHHHHHHHcCCCCCCCccccceeeeccCcCHH
Confidence 01 11 1235566665 8874 33457775 44566 5555544322111 111222
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC------cceeEe-c----CCCHHHH
Q 013839 314 GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ------LGMFCF-S----GLTPYQV 382 (435)
Q Consensus 314 ~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~g~~~~-~----~~~~~~~ 382 (435)
.++..+. . .+.+++..++.+++.+++.+.|++++. +.+..+. ...+.+ + +.+.+.+
T Consensus 219 ---~aa~~~~--~-----l~~~~~~~~~~~~~~~~~~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 285 (352)
T cd00616 219 ---QAAIGLA--Q-----LEKLDEIIARRREIAERYKELLADLPG---IRLPDVPPGVKHSYHLYVIRLDPEAGESRDEL 285 (352)
T ss_pred ---HHHHHHH--H-----HHhhHHHHHHHHHHHHHHHHHhcCCCC---ccCCCCCCCCceeeEEEEEEECCcCCCCHHHH
Confidence 1111111 1 133456667777888888888887632 3332221 122222 1 2456666
Q ss_pred HHHhhhccEEEe
Q 013839 383 DRLAKEFHIYMT 394 (435)
Q Consensus 383 ~~ll~~~gI~i~ 394 (435)
.+.|+++||.+.
T Consensus 286 ~~~L~~~gI~~~ 297 (352)
T cd00616 286 IEALKEAGIETR 297 (352)
T ss_pred HHHHHHCCCCee
Confidence 556677899764
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-16 Score=144.36 Aligned_cols=333 Identities=15% Similarity=0.150 Sum_probs=212.9
Q ss_pred CCCCCeeeeecceecCCCCCc--ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRP--VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..|||..|.--..-|+. ...+.+++....+.......|.+. ..+|.+.+++... . .+++. +.+
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~--~~~la~~L~~~s~--~-----~d~vf--f~N 107 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEP--QAELAEKLVELSP--F-----ADRVF--FCN 107 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChH--HHHHHHHHHhhCc--c-----ccEEE--EcC
Confidence 467899999888631222222 222333333333332223323332 2234444444431 1 45788 999
Q ss_pred CchhHHHHHHHHHHHhCC---CCEEEEcCCCChhhHHHHhhCCCCe-------------eeeeecCCCCCCcChHhHHHH
Q 013839 125 SGTGACRLFAEFQRRFHP---ESHIYFPDPTWSNHHNIWRDAQIPE-------------RTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~e~l~~~ 188 (435)
+|++|++.+.++...+.. ..+|+....+|.+-....-..+.+. ..+|. -|++.++++
T Consensus 108 SGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf-------nDi~al~~a 180 (404)
T COG4992 108 SGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF-------NDIEALEAA 180 (404)
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-------CCHHHHHHH
Confidence 999999999888877664 2478888878765533222222221 22222 288999999
Q ss_pred hhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 189 IKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 189 i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
++ +++.+|++..-+-..|+.. +++.++++.++|++||+++|.||+..+++..+ ..+....+ +...+ +.+
T Consensus 181 i~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG---k~fA~e~~-gV~PD---I~t 250 (404)
T COG4992 181 ID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG---KLFAYEHY-GVEPD---ILT 250 (404)
T ss_pred hc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc---hHHHHHHh-CCCCC---EEE
Confidence 98 6899999999999999988 55669999999999999999999998888765 34444443 22122 335
Q ss_pred ccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
+.|.+| .|..+|.++ + .+. +.+.+..-....+++-++++..++.+.|+.- ..+...++.+++.+
T Consensus 251 laK~Lg-GG~PigA~l--a-~~~----~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l--------~~e~ll~~v~~~g~ 314 (404)
T COG4992 251 LAKALG-GGFPIGAML--A-TEE----IASAFTPGDHGSTFGGNPLACAVALAVLEVL--------LEEGLLENVREKGE 314 (404)
T ss_pred eecccc-CCccceeeE--E-chh----hhhcCCCCcccCCCCcCHHHHHHHHHHHHHH--------cchhHHHHHHHHHH
Confidence 799999 889999996 3 554 4555554444567788888888877777531 12345566677777
Q ss_pred HHHHHHHhhCCCCC-ccccccCcceeEecCC--C--HHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHH
Q 013839 348 TLRQNLEKLGSSLN-WEHITNQLGMFCFSGL--T--PYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIH 417 (435)
Q Consensus 348 ~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~--~--~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~ 417 (435)
+|.+.|+++.-+.. ++-++.. |+++=+.+ + ...+.+.+.++|+.+.+.| |+... .++++++++++++|.
T Consensus 315 ~~~~~L~~l~~~~~~v~~vRG~-GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~ 393 (404)
T COG4992 315 YLLQRLRELKRRYPLVKEVRGR-GLMIGIELKEPYRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALE 393 (404)
T ss_pred HHHHHHHHHhhcCCceeeeecc-eeEEEEEecCcccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHH
Confidence 77777777642211 2222222 33333323 2 2344444567899999887 88743 348999999999999
Q ss_pred HHHHhhh
Q 013839 418 EVTRSEQ 424 (435)
Q Consensus 418 ~~l~~~~ 424 (435)
++++...
T Consensus 394 ~~l~~~~ 400 (404)
T COG4992 394 RALAAAS 400 (404)
T ss_pred HHHHHhh
Confidence 9997654
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-16 Score=152.22 Aligned_cols=350 Identities=10% Similarity=0.043 Sum_probs=193.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCC-CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe-c
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLE-SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ-A 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t 123 (435)
.++...||+..|.-...-|. ..+++++++.+++.. +.... +-......+|-+.+++.+...... .+.+. + +
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~---~~~~~--f~~ 109 (425)
T PRK09264 36 EDGKEYIDFFAGAGALNYGH-NNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGL---DYKVQ--FTG 109 (425)
T ss_pred CCCCEeeecccchhhccCCC-CCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCC---CceEE--EeC
Confidence 36788999988752111221 223344444454432 11111 111111223444444433111100 12343 4 4
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC----------CC---CeeeeeecCCCCC-CcChHhHHHHh
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA----------QI---PERTYHYYDPDSK-SLDFAALMDDI 189 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~----------g~---~~~~v~~~~~~~~-~~d~e~l~~~i 189 (435)
++|++|++.+..+........+|+....+|.+.....-.. +. .+..+|..+.... .-|++++++.+
T Consensus 110 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l 189 (425)
T PRK09264 110 PTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLL 189 (425)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHH
Confidence 7999999999766655544478888888887764322211 11 1233333110000 12677888888
Q ss_pred hcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 190 KNAP---DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 190 ~~~~---~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
.+.. +...+|++.....-.|. ..+++.+++|.++|++||+++|+||++.+++..+ ..+....+ +.... +
T Consensus 190 ~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG---~~~~~~~~-~v~PD---i 262 (425)
T PRK09264 190 EDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG---TFFSFERA-GITPD---I 262 (425)
T ss_pred HhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc---HHHHHhhc-CCCCC---E
Confidence 6431 34677777766776786 4588999999999999999999999998876543 12222222 22222 3
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
.++||.++..|+++|++++ +++ + ..+.......+.+.+.++..++.+.+..- + .-....++.+++
T Consensus 263 ~t~~K~l~~~G~pigav~~---~~~----i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~-----~--~~~~l~~~~~~~ 327 (425)
T PRK09264 263 VTLSKSISGYGLPMALVLI---KPE----L-DVWKPGEHNGTFRGNNLAFVTATAALEEY-----W--SDDAFEKEVKAK 327 (425)
T ss_pred EEeccccCCCccceEEEEE---chh----h-hccCCCccCCCCCCCHHHHHHHHHHHHHH-----H--hhhHHHHHHHHH
Confidence 4679999955999999974 665 4 23322122334445555555554555211 0 011344445555
Q ss_pred HHHHHHHHHhhC--CCCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCCC----cEEec---cCCCCcHHHH
Q 013839 346 RTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQDG----RISMA---GVTTGNVNYL 412 (435)
Q Consensus 346 ~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pgg----Ris~~---~~~~e~i~~~ 412 (435)
.+++.+.|+++. .+ .+.......|++.++.+. ...+...+.++||.+.+.| ||.++ ..++++++++
T Consensus 328 g~~l~~~l~~l~~~~~-~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~ 406 (425)
T PRK09264 328 GELVRERLEEIAAKYP-GLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEG 406 (425)
T ss_pred HHHHHHHHHHHHHhCC-CceecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHH
Confidence 555555554431 11 011112335667777662 1233334456899998754 44443 2478999999
Q ss_pred HHHHHHHHHhhhh
Q 013839 413 ANAIHEVTRSEQE 425 (435)
Q Consensus 413 ~~~l~~~l~~~~~ 425 (435)
+++|.+++++..+
T Consensus 407 ~~~l~~~l~~~~~ 419 (425)
T PRK09264 407 LDILEEAVAEVLA 419 (425)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876543
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-16 Score=152.13 Aligned_cols=344 Identities=10% Similarity=-0.001 Sum_probs=196.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC---CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF---LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...+|+..|.-...-|.. .+++++++.+++..... ..|.. .-..++.+.+++...+. -+++. ++
T Consensus 39 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~------~~~v~--f~ 108 (423)
T PRK05964 39 ADGRELIDAISSWWVATHGHN-HPYIDQAIREQLDRLDHVIFAGFTH-EPAERLAQRLVALTPGG------LDHVF--FS 108 (423)
T ss_pred CCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHhhCCCccccccCC-HHHHHHHHHHHHhCCCC------CCEEE--Ee
Confidence 366889999887421212212 23444444445442211 11221 11223444444433111 24677 89
Q ss_pred CCchhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCCCCCcChHh
Q 013839 124 LSGTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~ 184 (435)
++|++|++.+.++.... . +| .+|+....+|.+.......... ....++..+.+....+++.
T Consensus 109 ~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 188 (423)
T PRK05964 109 DSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDA 188 (423)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHH
Confidence 99999999997665544 1 33 6899888888776433221110 1122222101101122788
Q ss_pred HHHHhhcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 185 LMDDIKNAPDSSFFLLHPS-AHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+++.+.+.+++..++++.. .++.+|... +.+.+++|.++|++||+++|+||++.+++..+ .......+ +....
T Consensus 189 l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~-~v~pD- 263 (423)
T PRK05964 189 LEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFACEQA-GVSPD- 263 (423)
T ss_pred HHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHHHhc-CCCCC-
Confidence 8888865545666777755 577788776 89999999999999999999999998776543 11122111 21122
Q ss_pred EEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH------hhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI------ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 263 i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+.++||.++..++++|++++ +++ +.+.+... ....+.+.+.++..++.+.++.-. .+
T Consensus 264 --i~~~~K~l~gG~~p~~av~~---~~~----i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~--------~~ 326 (423)
T PRK05964 264 --IMCLSKGLTGGYLPLAATLC---TAE----IFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE--------DE 326 (423)
T ss_pred --eeeeehhhhcCcccceEEEE---cHH----HHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH--------hc
Confidence 24678999844489999864 788 77666431 112334566676666666664210 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCccccccCcceeEe-c-CCC----HHHHHHHhhhccEEEeCCC---cEEec-cCC
Q 013839 337 IMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCF-S-GLT----PYQVDRLAKEFHIYMTQDG---RISMA-GVT 405 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~-~-~~~----~~~~~~ll~~~gI~i~pgg---Ris~~-~~~ 405 (435)
...++..+..+.+.+.|+++. .+ .+......|.++.+ + +-+ ...+...+.++||.+.+.+ ||+.. ..+
T Consensus 327 ~~~~~~~~~g~~l~~~l~~l~~~~-~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l~~t 405 (423)
T PRK05964 327 PVLERVAALSAGLAEGLEPFRDLP-GVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLGNTIYLMPPYIIT 405 (423)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCC-CeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccC
Confidence 344556666666677666552 11 11112233332221 1 111 2334444456899998865 88754 248
Q ss_pred CCcHHHHHHHHHHHHHhh
Q 013839 406 TGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~ 423 (435)
++++++++++|.++++++
T Consensus 406 ~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 406 AEELDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998763
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=139.31 Aligned_cols=324 Identities=17% Similarity=0.180 Sum_probs=211.4
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
..+||.+-.. ..|...+++++....-++.- |+...-...|.+..|+.. |+. .++++.+||.++
T Consensus 22 ~~vDLRSDTv------T~PTdeMr~am~eA~vgDdV-yGeD~tt~rLE~~vA~l~-GKE---------AgLFv~SGTmgN 84 (384)
T KOG1368|consen 22 RSVDLRSDTV------TVPTDEMRRAMAEASVGDDV-YGEDPTTNRLEQRVAELF-GKE---------AGLFVPSGTMGN 84 (384)
T ss_pred eccccccccc------cCChHHHHHHHhhcccCccc-ccCCccHHHHHHHHHHHh-Ccc---------ceeeeccccccc
Confidence 4455655542 56777788777766544232 555545668888888886 542 144788888888
Q ss_pred HHHHHHHHHhC-CCCEEEEcCCCChh-hH--HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-----CCCcEEEEe
Q 013839 131 RLFAEFQRRFH-PESHIYFPDPTWSN-HH--NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-----PDSSFFLLH 201 (435)
Q Consensus 131 ~~~~~~~~~~~-~gd~Vlv~~p~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-----~~~~~~v~~ 201 (435)
.++ ++..|. +|.+|++.+-++.- |. .+....|+.+.++. +++++.+|+++|+.++.-. .+.+++|++
T Consensus 85 lla--Im~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~--~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIcl 160 (384)
T KOG1368|consen 85 LLA--IMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVK--NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICL 160 (384)
T ss_pred HHH--HHHHhcCCCceEEeccchheeehhccChhhhccceeEeee--eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEe
Confidence 777 777776 99999999866532 21 23445566666665 4777899999999998732 356899999
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 202 PSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
.|-+|-+| .++|.+++.++.++|++||+.+-.|.+-..-..- ....++..+....|.+-+ .+||.+|.| ||
T Consensus 161 ENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAav---asgV~vk~i~~~fDSVsi--CLSKglgAP---VG 232 (384)
T KOG1368|consen 161 ENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAV---ASGVPVKKICSAFDSVSI--CLSKGLGAP---VG 232 (384)
T ss_pred eccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHH---HcCCCHHHHHHhhhhhhh--hhhccCCCC---cc
Confidence 99888777 9999999999999999999999999983221110 011133333333333333 379998755 78
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG-SS 359 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 359 (435)
.+++ + +++ ++++-+........++-..+..++++...-. +....++ .-.++...+.++++..+ ++
T Consensus 233 SViV-G-~k~----FI~kA~~~RKalGGGmRQsGvLaaaaLval~-------~~~~~L~-~dHk~A~~lAe~~~~~~~i~ 298 (384)
T KOG1368|consen 233 SVIV-G-SKD----FIDKARHFRKALGGGMRQSGVLAAAALVALD-------ENVPLLR-ADHKRAKELAEYINTPEEIR 298 (384)
T ss_pred cEEE-c-cHH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHhh-------cchHHHH-HHHHHHHHHHHHhcccccee
Confidence 8874 4 888 8887777666666666666666665544321 2222222 22334445566666554 21
Q ss_pred CCccccccCcceeEe-----cCCCHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 360 LNWEHITNQLGMFCF-----SGLTPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 360 ~~~~~~~~~~g~~~~-----~~~~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
+.+...+.. +.. .+++.+.+.+.+++.||.+.++. ||.+- ..++++++.....+.+.+
T Consensus 299 --v~v~a~etN-iv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 299 --VEVPAVETN-IVNMVLCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred --eecchhhcc-eeeeecccccCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 223323444 444 36677777666688999999874 77763 348899999999885443
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-16 Score=151.95 Aligned_cols=344 Identities=11% Similarity=0.031 Sum_probs=195.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-| ...+++++++.+++... .+ +.......+.+..+++.+....... ..+.+. ++++|
T Consensus 53 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~-~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~--f~~sG 126 (443)
T PRK06058 53 VDGNRLIDLGSGIAVTSVG-NSAPRVVEAVREQVARF-TH-TCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSA--LFNSG 126 (443)
T ss_pred CCCCEEEEcCcchhhhccC-CCCHHHHHHHHHHHHhc-cC-ccccccCCHHHHHHHHHHHHhCCCC-CCCEEE--EeCCc
Confidence 3567888887774211111 12234444444454322 11 1111122344455555552221100 013566 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C--------C-----CeeeeeecCCCC----CCcC-------
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q--------I-----PERTYHYYDPDS----KSLD------- 181 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g--------~-----~~~~v~~~~~~~----~~~d------- 181 (435)
++|++.+..+.......++|+...++|.+........ + . .+..++.....+ ...+
T Consensus 127 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (443)
T PRK06058 127 AEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAAR 206 (443)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHH
Confidence 9999999766555544588999999998876433211 1 0 111122100100 0011
Q ss_pred -hHhHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 182 -FAALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 182 -~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.+++.+. +++..++++...+.-.|.. .+++.+++|.++|++||+++|.||++.+|+..+ ..+....+ +..
T Consensus 207 ~~~~l~~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG---~~fa~~~~-gv~ 280 (443)
T PRK06058 207 AITVIEKQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG---AWFACEHE-GIV 280 (443)
T ss_pred HHHHHHHhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh---hhhHHHhc-CCC
Confidence 122223222 2456666654433334555 368889999999999999999999999887543 12222222 222
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
.+++ +++|.++ .|+++|++++ +++ +.+.+.......+.+.+++++.++.+.|+.-. + +...
T Consensus 281 PDiv---~~gK~l~-~G~Pi~av~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~------~--~~l~ 341 (443)
T PRK06058 281 PDLI---TTAKGIA-GGLPLSAVTG---RAE----IMDAPHPGGLGGTYGGNPVACAAALAAIETIE------E--DDLV 341 (443)
T ss_pred CCEE---EEccccc-CCCccEEEEE---cHH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH------H--cCHH
Confidence 2233 3589999 8999999974 777 77766544445667788888888888875321 1 2445
Q ss_pred HHHHHHHHHHHHHHHhhCCC-CCccccccCcceeEec--CC-----CHH---HH-HHHhhhccEEEeCCC------cEEe
Q 013839 340 DRIQRKRTTLRQNLEKLGSS-LNWEHITNQLGMFCFS--GL-----TPY---QV-DRLAKEFHIYMTQDG------RISM 401 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~--~~-----~~~---~~-~~ll~~~gI~i~pgg------Ris~ 401 (435)
++.+++.+++.+.|+++... ..+....+.|.++.+. .- +.+ .+ ..+ .++||.+.+++ ||..
T Consensus 342 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~~~~~~~~~~~lr~~P 420 (443)
T PRK06058 342 ARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAA-HAAGVIVLTCGTYGNVIRLLP 420 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHH-HHCCeEEeccCCCCCEEEEEC
Confidence 66666677777777664210 0122245566655442 11 112 23 333 46899998753 6753
Q ss_pred c-cCCCCcHHHHHHHHHHHHHh
Q 013839 402 A-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
. ..+++++++++++|.+++++
T Consensus 421 pl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 421 PLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred CCccCHHHHHHHHHHHHHHHHh
Confidence 2 34899999999999998865
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-15 Score=147.98 Aligned_cols=155 Identities=18% Similarity=0.123 Sum_probs=119.3
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 169 (435)
...|.+.++++..+. . ++.+++|++|+.++ +.+++.+||+|+++.++|.+... .+...|++++.
T Consensus 65 ~~~le~~lA~l~g~~--------~--al~~~SG~~Ai~~a--l~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (427)
T PRK05994 65 NAVLEERVAALEGGT--------A--ALAVASGHAAQFLV--FHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRW 132 (427)
T ss_pred HHHHHHHHHHHhCCC--------c--EEEEcCHHHHHHHH--HHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEE
Confidence 457888888887332 2 33689999999888 77778999999999999986543 35678888887
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .|+++++++++ ++++++++++|+||||.+.+ +++|.++|++|++++|+|+++...... .
T Consensus 133 vd~-------~d~~~l~~ai~---~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~----~- 194 (427)
T PRK05994 133 ADA-------DDPASFERAIT---PRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLI----R- 194 (427)
T ss_pred ECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccC----C-
Confidence 754 27889999887 67899999999999999886 569999999999999999997532111 0
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
++ + ..-++++.|++|.+|-+|-.+|.+++
T Consensus 195 -pl----~-~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 195 -PI----E-HGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred -cc----c-cCCcEEEEcCccccCCCCCcEEEEEE
Confidence 11 1 23468899999999877777777653
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-15 Score=147.61 Aligned_cols=337 Identities=15% Similarity=0.088 Sum_probs=189.1
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCC------CCCCCcccHHHHH----HHHHh
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFL------ESISASVSTKMVE----ESVKL 104 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~Y~~~~g~~~lr~----~ia~~ 104 (435)
.+++++++-.. ..++.++|-.++ | . ..+.++++.... ...... .|.......+|.+ .++++
T Consensus 15 ~~~~~~~~~~~-~~~~~~~l~~se----n--~-~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l 86 (416)
T PRK13034 15 EVFAAINKELE-RQQDHLELIASE----N--F-TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQL 86 (416)
T ss_pred HHHHHHHHHHH-HHhcCeeecccc----c--C-CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHH
Confidence 35566554432 235777777766 2 1 233333333332 211111 1111223445555 66666
Q ss_pred HcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh-HHHHhh--CCCCe--eeeeecCCCCCC
Q 013839 105 VYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH-HNIWRD--AQIPE--RTYHYYDPDSKS 179 (435)
Q Consensus 105 l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~-~~~~~~--~g~~~--~~v~~~~~~~~~ 179 (435)
+ +.. ... +.+++|+.|+..+ +.+++.|||+|+++..+|.+. ...++. .+... +.++. +..++.
T Consensus 87 ~-g~~-------~al-v~~~SG~~A~~~~--l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~ 154 (416)
T PRK13034 87 F-GCD-------YAN-VQPHSGSQANGAV--YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGV-DRLTGL 154 (416)
T ss_pred h-CCC-------ceE-EecCCcHHHHHHH--HHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccc-ccccCC
Confidence 6 332 221 1468999999888 788899999999999888652 111111 11111 23333 234567
Q ss_pred cChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 180 LDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 180 ~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+|++++++.+.. .++++|++..+.+ |... ++.+|.++|++||+++|+|+++........ . ......
T Consensus 155 ~d~~~le~~l~~--~~~klVi~~~~~~--g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~g------~-~~~~~~ 220 (416)
T PRK13034 155 IDYDEVEELAKE--HKPKLIIAGFSAY--PREL---DFARFREIADEVGALLMVDMAHIAGLVAAG------E-HPNPFP 220 (416)
T ss_pred cCHHHHHHHHhh--cCCeEEEECCCcc--cccc---CHHHHHHHHHHcCCEEEEeCcccccCcccC------C-CCCCCC
Confidence 999999998863 3467887755443 4443 566888899999999999999544332210 0 001112
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIM 338 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~ 338 (435)
.-+++++|++|.++.+. .|+++ +.+++ +...++...... ..++......++...+... ......++
T Consensus 221 ~~Di~~~s~~K~l~g~~--GG~v~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~-----~~~~~~~~ 287 (416)
T PRK13034 221 HAHVVTTTTHKTLRGPR--GGMIL--TNDEE----IAKKINSAVFPGLQGGPLMHVIAAKAVAFGEA-----LQPEFKTY 287 (416)
T ss_pred CceEEEEeCcccCCCCC--CeEEE--ECcHH----HHHHHHhhcCCcccCCccHHHHHHHHHHHHHH-----hChhHHHH
Confidence 35688999999994232 26654 43444 444444322211 1122222222222222111 11123456
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccc--cCcceeE-ecC---CCHHHHHHHhhhccEEEeC----------C---C-c
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHIT--NQLGMFC-FSG---LTPYQVDRLAKEFHIYMTQ----------D---G-R 398 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~-~~~---~~~~~~~~ll~~~gI~i~p----------g---g-R 398 (435)
++++.++.++|++.|++.|+ .... ++..... .++ .+...+.+.|+++||.+.+ . + |
T Consensus 288 ~~~l~~~a~~l~~~L~~~G~----~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR 363 (416)
T PRK13034 288 AKQVIANAQALAEVLKERGY----DLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIR 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCC----EeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeE
Confidence 78899999999999988874 3322 2222211 122 2455665666788999964 1 2 8
Q ss_pred EEec-----cCCCCcHHHHHHHHHHHHHhh
Q 013839 399 ISMA-----GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 399 is~~-----~~~~e~i~~~~~~l~~~l~~~ 423 (435)
++.. +.++++++++.+.|++++...
T Consensus 364 ~~~~~~t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 364 IGTPAGTTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred eCcHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 7742 346899999999999988743
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=141.90 Aligned_cols=302 Identities=15% Similarity=0.094 Sum_probs=182.2
Q ss_pred HHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCC
Q 013839 73 VREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPT 152 (435)
Q Consensus 73 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~ 152 (435)
.+.+.+.+..+.... ++ -..++.+++++++...+ ++.+++||.|+++++..++ +.|||+|++++-+
T Consensus 18 ~~~v~~vl~sg~i~~-G~--~v~~FE~~~ae~~G~k~----------ava~~sgT~AL~laL~al~-ig~GDeVI~ps~T 83 (374)
T COG0399 18 LAAVQEVLKSGWLTG-GP--FVRRFEQAFAEYLGVKY----------AVAVSSGTAALHLALLALA-IGPGDEVIVPSFT 83 (374)
T ss_pred HHHHHHHHHcCCeec-Ch--HHHHHHHHHHHHhCCCe----------EEEecChHHHHHHHHHhcC-CCCCCEEEecCCc
Confidence 333444444553332 33 24689999999984442 3369999999999843334 7899999999999
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|....+.+...|++++++++ |++++.+|++.++++|+ +++++|+..+ =-|. ..++++|.++|++||++||
T Consensus 84 fvATan~i~~~Ga~PVFvDi-d~~T~nid~~~ie~aIt---~~tKAIipVh---l~G~---~~dm~~i~~la~~~~l~vI 153 (374)
T COG0399 84 FVATANAVLLVGAKPVFVDI-DPDTLNIDPDLIEAAIT---PRTKAIIPVH---LAGQ---PCDMDAIMALAKRHGLPVI 153 (374)
T ss_pred hHHHHHHHHHcCCeEEEEec-CCcccCCCHHHHHHHcc---cCCeEEEEeh---hccC---CCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999 67889999999999999 6788888543 2333 3367899999999999999
Q ss_pred eeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccc---
Q 013839 233 FDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY--- 307 (435)
Q Consensus 233 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 307 (435)
+|.+........ ...+ ...+ .+.+.|| .|.++ +| -.|.++ +++++ +.++++.+.....
T Consensus 154 EDaAqa~Ga~y~----gk~v---Gt~G--d~~~fSF~~~K~it-tg-EGGav~--tnd~e----la~k~~~lr~hG~~~~ 216 (374)
T COG0399 154 EDAAQAHGATYK----GKKV---GSFG--DIGAFSFHATKNLT-TG-EGGAVV--TNDEE----LAEKARSLRNHGLSRD 216 (374)
T ss_pred EEcchhccCeec----Cccc---cccc--ceEEEEecCCCCcc-cc-CceEEE--eCCHH----HHHHHHHHHHhCcCCC
Confidence 999953322211 0111 1112 3444454 69988 55 335553 76777 5555554432111
Q ss_pred ---------cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEec-
Q 013839 308 ---------GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFS- 375 (435)
Q Consensus 308 ---------~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~- 375 (435)
.+.+.-.-. +.+++...+| +.+++..++=++..+...+.|+++.. ..+..... ...++.+.
T Consensus 217 ~~~~y~~~~~G~N~rm~~-iqAAigl~QL-----~~l~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i 289 (374)
T COG0399 217 AVFKYLHEELGYNYRLTE-IQAAIGLAQL-----ERLDEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTI 289 (374)
T ss_pred ccccceeeecccccCHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEE
Confidence 111111111 1122222221 33344444444444555666666531 00111111 12233333
Q ss_pred -----CCCHHHHHHHhhhccEE----EeCC--------------C----------cE-E---eccCCCCcHHHHHHHHHH
Q 013839 376 -----GLTPYQVDRLAKEFHIY----MTQD--------------G----------RI-S---MAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 376 -----~~~~~~~~~ll~~~gI~----i~pg--------------g----------Ri-s---~~~~~~e~i~~~~~~l~~ 418 (435)
+.+.+.+...|++.||. ..|- + |. + +..++++++++.++.|++
T Consensus 290 ~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~ 369 (374)
T COG0399 290 LVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKE 369 (374)
T ss_pred EecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 13556676666778554 3441 1 32 2 235688999999999998
Q ss_pred HHHh
Q 013839 419 VTRS 422 (435)
Q Consensus 419 ~l~~ 422 (435)
++.+
T Consensus 370 ~~~~ 373 (374)
T COG0399 370 VLGS 373 (374)
T ss_pred Hhcc
Confidence 8753
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-15 Score=148.31 Aligned_cols=276 Identities=14% Similarity=0.089 Sum_probs=170.9
Q ss_pred CCCeeeEecCCchhHHHHHHHHHHHhCCC---CEEEEcCCCChhhHH----HHhhCCCCe----eeeeecCCCCCCcChH
Q 013839 115 EGRSAGVQALSGTGACRLFAEFQRRFHPE---SHIYFPDPTWSNHHN----IWRDAQIPE----RTYHYYDPDSKSLDFA 183 (435)
Q Consensus 115 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g---d~Vlv~~p~y~~~~~----~~~~~g~~~----~~v~~~~~~~~~~d~e 183 (435)
+++|+ ++.|++++++++ +..++.+| +.|++....|+.... .++..|+++ +.++. .+++.+|++
T Consensus 86 ~~~v~--~~~~~t~~l~~~--~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~~ 159 (406)
T TIGR01814 86 EDEVV--VMNTLTINLHLL--LASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRLE 159 (406)
T ss_pred CCcEE--EeCCchHHHHHH--HHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCHH
Confidence 67888 999999999988 55556664 368888888876322 345668876 34443 334678999
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++++.+....++++++++++++|.||..++ +++|.++|+++|+++++|++. .++..+. .+ ...+-++
T Consensus 160 ~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq-~~G~~~i-----d~----~~~gvD~ 226 (406)
T TIGR01814 160 DILDTIEKNGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAH-AVGNVPL-----DL----HDWGVDF 226 (406)
T ss_pred HHHHHHHhcCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccc-ccCCccc-----cc----ccCCCCE
Confidence 999888644367899999999999999986 558999999999999999994 4432211 11 1224578
Q ss_pred EEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHH---H----------------hhccccCCChhHHHHHHHHhC
Q 013839 264 CAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQ---I----------------ARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 264 ~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~---~----------------~~~~~~~~~~~~q~~~~~~l~ 323 (435)
++.|..|.+ |.|| |.+.+ . .+. ...+...+.. . .+....+++..+..++.++++
T Consensus 227 ~~~s~hK~l~g~pG---~~l~v-~-~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~ 300 (406)
T TIGR01814 227 ACWCTYKYLNAGPG---AGAFV-H-EKH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLD 300 (406)
T ss_pred EEEcCccccCCCCC---eEEEE-e-hhh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHH
Confidence 899999986 3455 33321 2 322 1111000000 0 000112345555555555554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcccccc-----CcceeEe-cCCCHHHHHHHhhhccEEEeCC
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITN-----QLGMFCF-SGLTPYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~-----~~g~~~~-~~~~~~~~~~ll~~~gI~i~pg 396 (435)
.-. +...++.+++..+..+++++.|+++ +...++.+..+ .+++..+ +..+.+.+.+.|.++||.+...
T Consensus 301 ~~~-----~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~~ 375 (406)
T TIGR01814 301 IFD-----QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGDKR 375 (406)
T ss_pred HHH-----hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEecc
Confidence 211 1235677788888888888888764 20111333322 1233322 1234555544456789988753
Q ss_pred --C--cEEec--cCCCCcHHHHHHHHHHHH
Q 013839 397 --G--RISMA--GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 397 --g--Ris~~--~~~~e~i~~~~~~l~~~l 420 (435)
+ |+|++ ..+++++++++++|++++
T Consensus 376 ~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 376 EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 2 99973 338899999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=151.39 Aligned_cols=326 Identities=15% Similarity=0.121 Sum_probs=196.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CC------CCCCCCccc---HHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EF------LESISASVS---TKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~g~---~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|=.++ | ..++.+.+++.....+ .. ..|...... ..+....++.+++.... +|
T Consensus 49 ~~~l~LiasE----N---~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a-----nv- 115 (493)
T PRK13580 49 RSSLKLIASE----N---YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHA-----YV- 115 (493)
T ss_pred hcCceEeccc----c---cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcc-----cc-
Confidence 5778887776 2 3455555555544421 11 223333333 34444445555665432 34
Q ss_pred eEecCCchhHHHHHHHHHHHhCC-------------------------------CCEEEEcCCCChhhHHH-----HhhC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHP-------------------------------ESHIYFPDPTWSNHHNI-----WRDA 163 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~-------------------------------gd~Vlv~~p~y~~~~~~-----~~~~ 163 (435)
...+|+.|+..+ +.+++.| ||+|+..++..+++... +...
T Consensus 116 --qp~Sg~~An~~v--~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~ 191 (493)
T PRK13580 116 --QPHSGADANLVA--FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGK 191 (493)
T ss_pred --cCCCcHHHHHHH--HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhh
Confidence 478899998888 7777766 89999888766555221 1111
Q ss_pred CCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 164 QIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 164 g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
..+.+.+++ +++++.+|++++++.+. +.+..++++..+|=++ .. ++++|.++|+++|+++++|+++.....+
T Consensus 192 ~~~~~~y~v-d~~~g~iD~d~l~~~~~---~~~plvii~g~S~~~~-~~---dl~~i~eia~~~gA~L~VD~AH~~Glig 263 (493)
T PRK13580 192 MFHQRSYGV-DPDTGLLDYDEIAALAR---EFKPLILVAGYSAYPR-RV---NFAKLREIADEVGAVLMVDMAHFAGLVA 263 (493)
T ss_pred eeeeEeccc-CcccCccCHHHHHHHHh---hcCCEEEEeCccccCC-Cc---CHHHHHHHHHHcCCEEEEECchhhceec
Confidence 245666776 35567899999999998 4455555556555544 43 4678999999999999999996443332
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
+ + ... .......+..++++|++|++. |.+.|++. + +++ +++.+.+.....+.++......+++.++.
T Consensus 264 g-~--~~~-~~~~~~~~~D~vtgT~hKaL~--GP~GG~I~--~-~~~----l~~~L~~a~P~i~gg~l~p~iAA~avAl~ 330 (493)
T PRK13580 264 G-K--VFT-GDEDPVPHADIVTTTTHKTLR--GPRGGLVL--A-KKE----YADAVDKGCPLVLGGPLPHVMAAKAVALA 330 (493)
T ss_pred c-c--cch-hhcCCCCCCcEEEeCChhhcc--CCCeEEEE--e-cHH----HHHHHhhCCCcccCCCccHHHHHHHHHHH
Confidence 1 1 100 000011245688999999982 33347775 3 777 77666543333444444444333333332
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc--cCcceeEecCC-----CHHHHHHHhhhccEEEeCC
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT--NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg 396 (435)
.- .....+.+++++.++.+.|.+.|.+.|+ .+.. .... .+++.+ +...+.+.|.+.||.+.+.
T Consensus 331 e~-----~~~ef~~y~~~l~~Na~~La~~L~~~G~----~vv~ggTdsh-IV~V~lg~~~~~g~~a~~~L~e~GI~vn~i 400 (493)
T PRK13580 331 EA-----RTPEFQKYAQQVVDNARALAEGFLKRGA----RLVTGGTDNH-LVLIDVTSFGLTGRQAESALLDAGIVTNRN 400 (493)
T ss_pred HH-----hCccHHHHHHHHHHHHHHHHHHHHhcCC----CccCCCCCCC-EEEEEeCCHHHHHHHHHHHHHHCCeEEccc
Confidence 11 0011256788999999999999999985 3321 2222 333333 2335666778899999631
Q ss_pred -------------C-cEEecc-----CCCCcHHHHHHHHHHHHHhh
Q 013839 397 -------------G-RISMAG-----VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 -------------g-Ris~~~-----~~~e~i~~~~~~l~~~l~~~ 423 (435)
| ||+... .++++++++.+.|.++++..
T Consensus 401 ~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 401 SIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred cCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 2 777532 35789999999999888643
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-15 Score=143.52 Aligned_cols=212 Identities=15% Similarity=0.128 Sum_probs=145.3
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v 170 (435)
..+.+.+++.-.+. ... ++++|..|+..+ +++++.+||+|+++...|.+....++ ..|.++..+
T Consensus 58 ~~le~~la~Le~g~--------~a~--~~~SGmaAi~~~--l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~ 125 (386)
T PF01053_consen 58 RALEQRLAALEGGE--------DAL--LFSSGMAAISAA--LLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFV 125 (386)
T ss_dssp HHHHHHHHHHHT-S--------EEE--EESSHHHHHHHH--HHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEE
T ss_pred HHHHHHHHHhhccc--------cee--eccchHHHHHHH--HHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEe
Confidence 45666666665332 333 789999999888 88899999999999999988876665 467777666
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-ceeeeeccCCCccCCCCcccH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG-HFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~vi~Deay~~~~~~~~~~~~ 249 (435)
+. -|+++++++++ +++++|++.+|.||+..+ .++++|+++|+++| +++|+|+.+.....-.
T Consensus 126 d~-------~d~~~l~~~l~---~~t~~v~~EspsNP~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~----- 187 (386)
T PF01053_consen 126 DP-------TDLEALEAALR---PNTKLVFLESPSNPTLEV---PDLEAIAKLAKEHGDILVVVDNTFATPYNQN----- 187 (386)
T ss_dssp ST-------TSHHHHHHHHC---TTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC------
T ss_pred Cc-------hhHHHHHhhcc---ccceEEEEEcCCCccccc---ccHHHHHHHHHHhCCceEEeeccccceeeec-----
Confidence 32 38899999998 789999999999999554 56779999999998 9999999975432211
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC-hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD-SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ . ..-+|++.|.+|.++-.|--+|-+++ +++ ++ +.+.++.........+++...+.+..-|++
T Consensus 188 -pL----~-~GaDivv~S~TKyl~Ghsdv~~G~vv-~~~~~~----~~~~l~~~~~~~G~~~~p~da~ll~rgl~T---- 252 (386)
T PF01053_consen 188 -PL----E-LGADIVVHSATKYLSGHSDVMGGAVV-VNGSSE----LYDRLREFRRLLGATLSPFDAWLLLRGLRT---- 252 (386)
T ss_dssp -GG----G-GT-SEEEEETTTTTTTSSSE-EEEEE-ESSHHH----HHHHHHHHHHHHT-B--HHHHHHHHHHHTT----
T ss_pred -cC----c-CCceEEEeeccccccCCcceeeEEEE-ECchhh----hhhhhcchhhhcCccchHHHHHHHhcCCCc----
Confidence 11 1 13578899999998645544444442 434 45 666666555555555666655555555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++...+.+.|++++
T Consensus 253 ------l~~R~~~~~~nA~~lA~~L~~hp 275 (386)
T PF01053_consen 253 ------LPLRMERQNENAEALAEFLEEHP 275 (386)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTST
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556677778888899998875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-15 Score=141.25 Aligned_cols=312 Identities=15% Similarity=0.143 Sum_probs=196.8
Q ss_pred hHHHHH-HHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEc
Q 013839 71 QCVREA-EAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFP 149 (435)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~ 149 (435)
..+.+. ...+..++. .|..+.....|.+++++++ |.. .++ .+++|+.|++++ +...++|||.| +
T Consensus 50 ~aMs~~q~a~~~~GDe-~yag~~s~~~lE~~va~~~-G~~-------~av--~v~sGT~Al~ll--~~l~l~pGDeV--p 114 (450)
T TIGR02618 50 NAMSDKQWAGLMMGDE-AYAGSRNFYHLERTVRELY-GFK-------YVV--PTHQGRGAENLL--SQIAIKPGDYV--P 114 (450)
T ss_pred HHHHHHHHHHhhhcch-hhcCCCcHHHHHHHHHHHH-CCC-------eEE--EcCCHHHHHHHH--HHhCCCCcCEE--C
Confidence 455555 445544533 4888888889999999998 432 344 799999998876 55568899987 7
Q ss_pred CCCChhhHH-HHhhCCCCeeeeeec--------CCCCCCcChHhHHHHhhcC-CCCcEEEEeCCCCCC-CCCCCCHHHHH
Q 013839 150 DPTWSNHHN-IWRDAQIPERTYHYY--------DPDSKSLDFAALMDDIKNA-PDSSFFLLHPSAHNP-TGVDPTEEQWR 218 (435)
Q Consensus 150 ~p~y~~~~~-~~~~~g~~~~~v~~~--------~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p~NP-tG~~~~~~~l~ 218 (435)
+++|..... .++..|+..+.++.. ++.++.+|++.+++.+++. ..++.++.+.+++|- .|..++.++++
T Consensus 115 sn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~ 194 (450)
T TIGR02618 115 GNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMR 194 (450)
T ss_pred CceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHH
Confidence 787744444 478889876666442 1345789999999999843 224456777777885 58999999999
Q ss_pred HHHHHHHhcCceeeeeccCCC-cc---------CCCCcccHHHH-HHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 219 EISYQFKVKGHFPFFDMAYQG-FA---------SGDLDKDAQAI-RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 219 ~i~~~~~~~~~~vi~Deay~~-~~---------~~~~~~~~~~~-~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
++.++|++||+.+|+|.+... .. +.+ .+.+.+ +..... -+.+..|..|.++.+ +|.++ +.+
T Consensus 195 ~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~--~~i~ei~~e~~~~--aD~~~~S~~Kd~~~~---~GG~l-~~~ 266 (450)
T TIGR02618 195 EVRELCEAHGIKVFYDATRCVENAYFIKEREQGYED--KSIAEILKEMMSY--ADGCTMSGKKDCLVN---IGGFL-CMN 266 (450)
T ss_pred HHHHHHHHcCCEEEEEccchhhChhhhhcccccccC--CCHHHHHHHHhcc--CcEEEEeeccCCCCC---CceEE-EeC
Confidence 999999999999999999532 11 111 112111 222222 234788899997655 34443 246
Q ss_pred ChhHHHHHHHHHHHHhhcc-----ccCCChhHHHHHHHHhCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCC
Q 013839 288 DSKQAAAIRSQIQQIARAM-----YGSPPVHGILLVATILSDPNLKSLWIDEVK-IMADRIQRKRTTLRQNLEKLGSSLN 361 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~-----~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~ 361 (435)
+++ ++++.+...... ..+.+.-...+++..|.+ .+. .+.+.-....++|.+.|.+.|.|
T Consensus 267 d~~----l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e---------~~~~~y~~~r~~~a~~La~~L~~~Gvp-- 331 (450)
T TIGR02618 267 DDE----MFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIRE---------AVDYEYIEHRVKQVRYLGDKLKAAGVP-- 331 (450)
T ss_pred CHH----HHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHCCCc--
Confidence 888 776666653221 112222222333333332 111 11112222457788899888854
Q ss_pred ccccccCcceeEecCC------------C-HHHHHHHhhhccEEEeCCC---------------------cEEecc--CC
Q 013839 362 WEHITNQLGMFCFSGL------------T-PYQVDRLAKEFHIYMTQDG---------------------RISMAG--VT 405 (435)
Q Consensus 362 ~~~~~~~~g~~~~~~~------------~-~~~~~~ll~~~gI~i~pgg---------------------Ris~~~--~~ 405 (435)
+..|.+|--++++. . ..++..|..+.||-...-| |+.+.. .|
T Consensus 332 --v~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt 409 (450)
T TIGR02618 332 --IVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYT 409 (450)
T ss_pred --ccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeecccccccc
Confidence 45566665555532 1 2345666667888765321 777643 27
Q ss_pred CCcHHHHHHHHHHHHHh
Q 013839 406 TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~ 422 (435)
.+.+++..++|..+.++
T Consensus 410 ~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 410 YAHMDVVADGIIKLYKH 426 (450)
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 78899999999988764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-15 Score=144.26 Aligned_cols=156 Identities=14% Similarity=0.048 Sum_probs=116.3
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 169 (435)
...|.+.++++..+. . ++++++|+.|+.++ +.+++.+||+|+++...|.+.... +...|++++.
T Consensus 71 ~~~Le~~lA~l~g~~--------~--av~~sSG~aAi~~a--l~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (436)
T PRK07812 71 QDVVEQRIAALEGGV--------A--ALLLASGQAAETFA--ILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSF 138 (436)
T ss_pred HHHHHHHHHHHhCCC--------e--EEEEccHHHHHHHH--HHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEE
Confidence 457888888876332 2 33689999998888 777889999999999888776543 3446776666
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++ +. .|++.++++++ +++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|+++..-...
T Consensus 139 vd--d~----~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~~------ 200 (436)
T PRK07812 139 VE--DP----DDLDAWRAAVR---PNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYLI------ 200 (436)
T ss_pred EC--CC----CCHHHHHHhCC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC------
Confidence 63 12 28899999887 67899999999999999876 458999999999999999985431111
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.++ . ..-.+++.|++|.+|..|--+|++++
T Consensus 201 ~pl----~-~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 201 RPL----E-HGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred Cch----h-cCCCEEEEecccccCCCCCeEEEEEE
Confidence 011 1 23457789999999878777888764
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-15 Score=143.84 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=121.1
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 169 (435)
..+|++.++++..+. . ++++++|++|+.++ +.+++.+||+|+++...|......+ ...|++++.
T Consensus 66 ~~~le~~lA~l~g~~--------~--av~~sSGt~Al~~a--l~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~ 133 (433)
T PRK08134 66 VAVLEERVAALEGGV--------G--AIATASGQAALHLA--IATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTF 133 (433)
T ss_pred HHHHHHHHHHHhCCC--------c--EEEeCCHHHHHHHH--HHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEE
Confidence 568888999887433 2 23799999999988 6667889999999999998665543 457888888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. + |+++++++++ +++++|++.+|+||||.+.+ +++|+++|+++|+++|+|.++..-... .
T Consensus 134 vd~---~----d~~~l~~~i~---~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~----~- 195 (433)
T PRK08134 134 VKP---G----DIDGWRAAIR---PNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL----R- 195 (433)
T ss_pred ECC---C----CHHHHHHhcC---CCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----C-
Confidence 865 1 7899999998 78999999999999999876 569999999999999999996432211 0
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
++ ...-++++.|.+|.++-+|..+|.+++
T Consensus 196 -pl-----~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 196 -PF-----EHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred -ch-----hcCCCEEEeccccccCCCCCceEEEEE
Confidence 11 124578899999999888887877753
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-15 Score=134.37 Aligned_cols=312 Identities=14% Similarity=0.049 Sum_probs=190.5
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEE
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHI 146 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~V 146 (435)
..|.+.+.+++.+.......-|+...-...+.+.+++.+ ++ ..+. ++.+||+|+.++ +.+.++||+.|
T Consensus 10 ~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~-g~-------~a~~--Fv~sGT~aN~la--l~~~~~~~~~v 77 (342)
T COG2008 10 AGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELF-GK-------EAAL--FVPSGTQANQLA--LAAHCQPGESV 77 (342)
T ss_pred CCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHh-CC-------ceEE--EecCccHHHHHH--HHHhcCCCCeE
Confidence 455666777666665233445777666666666666665 33 1344 899999999998 88889999999
Q ss_pred EEcCCCChhhHH--HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 147 YFPDPTWSNHHN--IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 147 lv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
++..-++....+ ..+..+ ...+++..+.+++.+++|++++.+... ...+..+++.+.+|..|+++|.+++++|.
T Consensus 78 i~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~ 156 (342)
T COG2008 78 ICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS 156 (342)
T ss_pred EEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHH
Confidence 998866643322 223332 122333323467899999999988732 12344555555566779999999999999
Q ss_pred HHHHhcCceeeeeccC--CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHH
Q 013839 222 YQFKVKGHFPFFDMAY--QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI 299 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l 299 (435)
++|++|++.+..|.+- ......+ ++...+... -+.+..++||..+.++ |.++ ..+.+ +++++
T Consensus 157 ~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~-----~D~v~~~~tK~g~~~~---gAiv--~gn~~----~~~~a 220 (342)
T COG2008 157 AVCKEHGLPLHMDGARLANALVALG--VALKTIKSY-----VDSVSFCLTKGGGAPV---GAIV--FGNRD----FAKRA 220 (342)
T ss_pred HHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhh-----CCEEEEecccCCccee---eeEE--EcCHH----HHHHH
Confidence 9999999999999983 2222221 122222222 3455667999987665 7776 34888 77766
Q ss_pred HHHhhccccCCC--hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-CCCCCccccccCcceeEec
Q 013839 300 QQIARAMYGSPP--VHGILLVATILSDPNLKSLWIDEVKIMADRIQ-RKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFS 375 (435)
Q Consensus 300 ~~~~~~~~~~~~--~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~ 375 (435)
+..........+ .+.......+|.+. +-...+++. +..+.|.+.++.. |. +...+.....+|+
T Consensus 221 ~~~rK~~Ggl~~k~r~laA~~~~~l~~~---------~~~~~~~Han~mA~~La~~~~~~~G~----~~~~~~~tN~vf~ 287 (342)
T COG2008 221 RRWRKRAGGLMRKARFLAAQGLYALEDD---------VWRLAADHANAMAARLAEGLEAKPGV----KLAFPVETNMVFV 287 (342)
T ss_pred HHHHHHhcccHhhhhHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHHHHhhhhcCCc----eeccCCcccEEEE
Confidence 655443333333 22223333444432 122222222 2366777888744 53 4444333446667
Q ss_pred CCCHHHHHH-----HhhhccEEEeCCC---cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 376 GLTPYQVDR-----LAKEFHIYMTQDG---RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 376 ~~~~~~~~~-----ll~~~gI~i~pgg---Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
.+....+.. .+...|+.+.+++ |+..+. .+++++++++..+++++
T Consensus 288 ~l~~~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 288 RLPESAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred ECChHHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 665432222 2334567776664 775432 37888998888887764
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=140.06 Aligned_cols=210 Identities=10% Similarity=0.003 Sum_probs=146.3
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v 170 (435)
..|.+.+++.-.+. . ++++++|+.|+.++ +++++.+||+|++++..|.+....+ +..|+++..+
T Consensus 65 ~~le~~la~LEg~~--------~--a~~~~SGmaAi~~~--~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 65 FSLQEAMCELEGGA--------G--CALYPCGAAAVANA--ILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred HHHHHHHHHHhCCC--------e--EEEEhHHHHHHHHH--HHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 35666666654222 2 33789999999988 7778999999999998987776554 5678888777
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCCCCccc
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~~~~~~ 248 (435)
+. .|.++++++++ +++++|++.+|.||||.+.+ +++|+++|+++ |+++++|.++..-..- +
T Consensus 133 d~-------~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~----~ 195 (395)
T PRK08114 133 DP-------LIGADIAKLIQ---PNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLF----K 195 (395)
T ss_pred CC-------CCHHHHHHhcC---CCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccccc----C
Confidence 53 36788999997 67899999999999998875 56999999998 4999999997432211 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+ ....-++++.|.+|.++-+| .-.|.++ . +++ +.+.++..........++...+.+..-|+
T Consensus 196 --p-----l~~GaDivv~S~tKyl~Ghsdv~~G~v~--~-~~~----~~~~l~~~~~~~G~~~~p~~a~l~~rgl~---- 257 (395)
T PRK08114 196 --A-----LDFGIDISIQAGTKYLVGHSDAMIGTAV--A-NAR----CWEQLRENSYLMGQMVDADTAYMTSRGLR---- 257 (395)
T ss_pred --H-----HHcCCcEEEEcCcccccCCCcceeEEEE--c-CHH----HHHHHHHHHHhccCCCCHHHHHHHHcCCC----
Confidence 1 11245799999999876555 4455443 3 666 44545544333444555555444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
-+.-..++..++...+.+.|+.++
T Consensus 258 ------TL~lR~~~~~~na~~va~~L~~hp 281 (395)
T PRK08114 258 ------TLGVRLRQHEESSLKVAEWLAEHP 281 (395)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566778888888889998775
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-14 Score=143.07 Aligned_cols=343 Identities=10% Similarity=0.051 Sum_probs=190.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC-CC-CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE-FL-ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...+|+..|.....-| ...+++++.+.+++.... .. .+-+.....+|-+.+++...+... ...+. ..++
T Consensus 36 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~----~~~~~-f~~~ 109 (442)
T TIGR00709 36 VEGKEYLDFLAGAGTLALG-HNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM----DYKLQ-FPGP 109 (442)
T ss_pred CCCCEEEEccccHhhhcCC-CCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC----CccEE-EeCC
Confidence 3668899998885312122 223344455555554321 11 111222223344444443311100 11332 1468
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CC-------C-----CeeeeeecCCCCCCc--------Ch-
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQ-------I-----PERTYHYYDPDSKSL--------DF- 182 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g-------~-----~~~~v~~~~~~~~~~--------d~- 182 (435)
+|++|++.+..+........+|+....+|.+....... .| . .+..++. ++.... +.
T Consensus 110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 187 (442)
T TIGR00709 110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPY--PHEYRCPFGIGGEAGSN 187 (442)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCC--CccccccccCCchhHHH
Confidence 99999999976665554447899999889877543332 11 0 1222222 111111 11
Q ss_pred ---HhHHHHhh---cCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 183 ---AALMDDIK---NAPDSSFFLLHPSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 183 ---e~l~~~i~---~~~~~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+.+++.+. +...+..++++...++..| ...+++.+++|.++|++||+++|.||++.+|+..+ ..+....+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~~ 264 (442)
T TIGR00709 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG---TMFAFEHA 264 (442)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHHc
Confidence 12333332 1223456666655444445 45799999999999999999999999999997654 23343333
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+....+++ +||.++. |+++|++++ +++ + +.+.......+++.+++++.++.+.|+.-. +
T Consensus 265 -gv~PDiv~---~gK~l~~-G~Pigav~~---~~~----~-~~~~~~~~~~T~~gnpla~aaa~a~L~~i~------~-- 323 (442)
T TIGR00709 265 -GIEPDFVV---MSKAVGG-GLPLAVLLI---APE----F-DAWQPAGHTGTFRGNQLAMVTGTEALNYWK------D-- 323 (442)
T ss_pred -CCCCcEEE---EcccccC-CcccEEEEE---chH----H-hccCCCcCCCCCCcCHHHHHHHHHHHHHHH------h--
Confidence 22222333 7999995 899999974 655 2 222111223566788888888888874311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC--C----------------HHHHHHHhhhccEEEeC
Q 013839 336 KIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL--T----------------PYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~--~----------------~~~~~~ll~~~gI~i~p 395 (435)
+...++++++.+++.+.|+++- .+ .+......|.++. +.+ + ...+...+.++||.+.+
T Consensus 324 ~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~~-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~ 401 (442)
T TIGR00709 324 DNLAQNAQERGERITSFLDDMIKEHP-CIGNVRGRGLMQG-IMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLET 401 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEE-EEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEee
Confidence 2344566666677777766541 11 1122333443332 211 0 12333334568999976
Q ss_pred C---C---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 396 D---G---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 396 g---g---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
. | |+... ..++++++++++++.+++.+.
T Consensus 402 ~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 402 GGREGEVFRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5 3 66643 348999999999999998765
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=142.12 Aligned_cols=346 Identities=14% Similarity=0.078 Sum_probs=194.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC--CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL--ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...+|+..|.-...-|. ..+++++++.+++...... .+.......+|-+.+++...+.. .+.+. +++
T Consensus 39 ~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~--f~~ 110 (445)
T PRK08593 39 VDGKTYIDLLASASSQNVGH-APPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDF-----EKRVT--FGL 110 (445)
T ss_pred CCCCEEEECCccHHhhcCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC-----CCEEE--ECC
Confidence 36678899977642111222 2334444444454422111 11112222344455544431110 13666 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCC-------------CeeeeeecCCCC--CC-cC------
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQI-------------PERTYHYYDPDS--KS-LD------ 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~~--~~-~d------ 181 (435)
+|++|++.+..+........+|+....+|.+...... ..+. .++.+|..+... +. .+
T Consensus 111 SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (445)
T PRK08593 111 SGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEE 190 (445)
T ss_pred chHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHH
Confidence 9999999997655544334678888888877643221 1110 122233211100 00 01
Q ss_pred -hHhHHHHhhcC--CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 182 -FAALMDDIKNA--PDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 182 -~e~l~~~i~~~--~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++.+++.+.+. .++..+|++....+..|.. .+++.+++|.++|++||+++|.||++.+|+..+ ..+....+ +
T Consensus 191 ~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG---~~~a~~~~-g 266 (445)
T PRK08593 191 YLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG---KWSSISHF-N 266 (445)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hHHHHHhc-C
Confidence 23454444321 2467888888888888887 688889999999999999999999998886543 12222222 2
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
.... +-+++|.++ .|+++|++++ +++ +++.+.......+.+.+++++.++.+.|+.-. + +.
T Consensus 267 v~pD---i~t~gK~l~-~G~p~gav~~---~~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~------~--~~ 327 (445)
T PRK08593 267 ITPD---LMSFGKSLA-GGMPMSAIVG---RKE----IMESLEAPAHLFTTGANPVSCAAALATIDMIE------D--ES 327 (445)
T ss_pred CCCC---Eeeeccccc-CCcccEEEEE---cHH----HHhhhccCCCCCCCCCCHHHHHHHHHHHHHHH------h--cc
Confidence 2122 337899998 7899999964 777 76666432223455667777776666664211 1 13
Q ss_pred HHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC---------CH---HHHHHHhhhccEEEeCC-C---cE
Q 013839 338 MADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL---------TP---YQVDRLAKEFHIYMTQD-G---RI 399 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~---------~~---~~~~~ll~~~gI~i~pg-g---Ri 399 (435)
..++.+++.+++.+.|+++. .+ .+......|. +.-+.+ +. ..+...+.++||.+.+. + |+
T Consensus 328 l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl-~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~ 405 (445)
T PRK08593 328 LLQRSAEKGEYARKRFDQWVSKYN-FVGDVRGYGL-SIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRF 405 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeccce-EEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEE
Confidence 44555555566666665541 11 0112222332 222211 11 22333335689999774 3 77
Q ss_pred Eec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 400 SMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 400 s~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
... ..++++++++++++.++++++..
T Consensus 406 ~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 406 QPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred ECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 653 24899999999999999987553
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=139.91 Aligned_cols=337 Identities=15% Similarity=0.092 Sum_probs=196.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.-...-|.. .+.+++++.+++... ...+. ....+....+++++..... .+++. ++++|+
T Consensus 34 dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~-~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~--f~~SGs 103 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKL-INPSP--AFYNEPMAKLAGLLTQHSC----FDKVF--FANSGA 103 (395)
T ss_pred CCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhc-ccccc--cccCHHHHHHHHHHhhccC----CCEEE--EeCCcH
Confidence 56789999876421222322 334444444554321 11111 1234566778888743311 24666 899999
Q ss_pred hHHHHHHHHHHHh----CCC-CEEEEcCCCChhhHH-HHhhCCCCe---eeeeecC--CCCCCcChHhHHHHhhcCCCCc
Q 013839 128 GACRLFAEFQRRF----HPE-SHIYFPDPTWSNHHN-IWRDAQIPE---RTYHYYD--PDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 128 ~a~~~~~~~~~~~----~~g-d~Vlv~~p~y~~~~~-~~~~~g~~~---~~v~~~~--~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+|++.+..+.... .+| .+|+..+.+|.+... .+...|... ...|... ......|++.+++.+. +++
T Consensus 104 eA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~ 180 (395)
T PRK03715 104 EANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT---DKT 180 (395)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC---CCc
Confidence 9999997554433 134 678888888876643 222223211 0111100 0000247888988886 567
Q ss_pred EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 197 FFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++...++..|... +++.+++|.++|++||+++|.||++.+++..+ ..+....+ +... + +.+++|.+| .
T Consensus 181 aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG---~~~a~~~~-gv~P-D--i~t~gK~lg-~ 252 (395)
T PRK03715 181 VAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG---TLFAYELS-GIEP-D--IMTLGKGIG-G 252 (395)
T ss_pred eEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc---chhhHhhc-CCCC-c--eeeehhhhh-C
Confidence 8888887777788875 68889999999999999999999998875543 11222222 2212 2 357899998 6
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|..+|.+++ +++ +.. +.......+.+.++++..++.+.|+.- + -+...++.+++.+++.+.|++
T Consensus 253 G~p~~av~~---~~~----i~~-~~~~~~~~T~~g~pl~~aaala~L~~l-------~-~~~l~~~~~~~g~~l~~~L~~ 316 (395)
T PRK03715 253 GVPLAALLA---KAE----VAV-FEAGDQGGTYNGNPLMTAVGVAVISQL-------L-APGFLEGVRARGEYLKEKLLE 316 (395)
T ss_pred CcceEEEEE---ccc----ccc-ccCCCcCCCCCCCHHHHHHHHHHHHHH-------H-hccHHHHHHHHHHHHHHHHHH
Confidence 788888853 666 532 211111234455566655555555321 1 134566677777777777776
Q ss_pred hCCCCCccccccCcceeEecCCC---HHHHHHHhhhc---cEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 356 LGSSLNWEHITNQLGMFCFSGLT---PYQVDRLAKEF---HIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~---gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.....+...... |.+.-+.+. ...+...+.+. ||.+.+.+ ||+.. ..+++++++++++|.+++++
T Consensus 317 l~~~~~i~~vrG~-Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~ 393 (395)
T PRK03715 317 LSEERGLEGERGE-GLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDK 393 (395)
T ss_pred HhhcCCcCeEEcc-eeEEEEEecCchHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 5221112223333 333333332 23333333444 99997543 88763 34899999999999998865
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-14 Score=136.49 Aligned_cols=298 Identities=15% Similarity=0.116 Sum_probs=188.5
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH-HHHhhCC
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH-NIWRDAQ 164 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~g 164 (435)
..|........|.+++++++ |.. .++ .+++|+.|++++ +...++|||.| +..++.... ..+...|
T Consensus 72 d~Yagd~s~~~LE~~vAe~l-G~e-------~aV--~v~sGTaAl~ll--~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G 137 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYY-GFK-------HVV--PTHQGRGAENLL--SRIAIKPGQYV--PGNMYFTTTRYHQELNG 137 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHH-CCC-------eEE--EeCCHHHHHHHH--HHhCCCCcCEE--CCccchHhhHHHHHhCC
Confidence 44888888889999999998 432 334 799999999986 44457899975 555444333 3367788
Q ss_pred CCeeeeee--------cCCCCCCcChHhHHHHhhcC-CCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeee
Q 013839 165 IPERTYHY--------YDPDSKSLDFAALMDDIKNA-PDSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFD 234 (435)
Q Consensus 165 ~~~~~v~~--------~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~D 234 (435)
+..+.+.. .++.++.+|++.+++.+++. .+++.++.+.+++|-. |...+.+++++|.++|++||+.||+|
T Consensus 138 a~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 138 GIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred cEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 86555531 12446889999999999753 2344556666778888 78889999999999999999999999
Q ss_pred ccCCCc----c------CCCCcccHHHHHHhh-h-cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 235 MAYQGF----A------SGDLDKDAQAIRIFL-E-DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 235 eay~~~----~------~~~~~~~~~~~~~~~-~-~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
.+...- . +.+ .++.... + ..--+.++.|++|.++.+ . -|+++ +++++ +.++++..
T Consensus 218 aAra~gna~fI~~re~~y~~-----~~i~ei~~e~~s~aD~~t~S~~K~~~~~-~-GG~i~--t~D~e----L~~~~r~~ 284 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQD-----KSIKEIVHEMFSYADGCTMSGKKDCLVN-I-GGFLA--MNDEE----LFDEAKEL 284 (460)
T ss_pred CcchhcChhhhcccccccCC-----CcHhHHhhhccCcCcEEEEeCCCCCCCC-C-ceEEE--ECCHH----HHHHHHHh
Confidence 994211 1 111 1221100 0 012356677899998754 1 26664 66787 77777765
Q ss_pred hh-----ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-
Q 013839 303 AR-----AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG- 376 (435)
Q Consensus 303 ~~-----~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~- 376 (435)
.- ..+.+.+.-...+++..|.+.- ++ .+.+.--...++|.+.|.+.|.| +..|.+|--++++
T Consensus 285 ~~~~eG~~tygg~~grd~~alAvgl~E~~------~~--~y~~~ri~~~~~l~~~L~~~Gvp----v~~p~ggH~v~vda 352 (460)
T PRK13237 285 VVVYEGMPSYGGMAGRDMEAMAIGIEESV------QY--EYIEHRVGQVRYLGEKLLAAGVP----IVEPVGGHAVFLDA 352 (460)
T ss_pred ccccCCCcCCCChhhhHHHHHHhHHHhhc------hH--HHHHHHHHHHHHHHHHHHHCCCc----eecCCCceEEEEEh
Confidence 21 1222333323334433343221 11 22222233557888899888854 6667777444452
Q ss_pred ------C-----C-HHHHHHHhhhccEEEeCCC---------------------cEEecc--CCCCcHHHHHHHHHHHHH
Q 013839 377 ------L-----T-PYQVDRLAKEFHIYMTQDG---------------------RISMAG--VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 377 ------~-----~-~~~~~~ll~~~gI~i~pgg---------------------Ris~~~--~~~e~i~~~~~~l~~~l~ 421 (435)
+ . ..++..|..+.||-...-| |+.+.. .|.+.+++..++|..+.+
T Consensus 353 ~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 353 RRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred HHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 2 1 2345666677888775321 777642 277889999999998876
Q ss_pred h
Q 013839 422 S 422 (435)
Q Consensus 422 ~ 422 (435)
+
T Consensus 433 ~ 433 (460)
T PRK13237 433 H 433 (460)
T ss_pred h
Confidence 4
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-14 Score=136.72 Aligned_cols=274 Identities=14% Similarity=0.121 Sum_probs=180.3
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 169 (435)
...|.+.++++-.+. +.. .+++|..|+..+ ++.++.+||+|++++..|++.... ++..|.++.+
T Consensus 65 ~~~lE~~~a~LEg~~--------~~~--afsSGmaAI~~~--~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 65 RDALEEALAELEGGE--------DAF--AFSSGMAAISTA--LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred HHHHHHHHHHhhCCC--------cEE--EecCcHHHHHHH--HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEE
Confidence 345666666654222 333 699999999998 888999999999999988777554 4467777776
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .+.+.+++++.+ +++++|++.+|.|||-.+ .|+.+|+++|+++|+++|+|+.|..-.+..
T Consensus 133 ~d~-------~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v---~DI~~i~~~A~~~g~~vvVDNTfatP~~q~----- 195 (396)
T COG0626 133 VDP-------GDDEALEAAIKE--PNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTFATPVLQR----- 195 (396)
T ss_pred ECC-------CChHHHHHHhcc--cCceEEEEeCCCCccccc---ccHHHHHHHHHhcCCEEEEECCcccccccC-----
Confidence 642 245566666652 479999999999999655 567799999999999999999975543321
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ + ..-+|++.|.+|.++-.+-=+|-++ ++++++ +.+.+...+. .....+++...+.+.+-++
T Consensus 196 -PL----~-~GaDIVvhSaTKyl~GHsDvl~G~v-~~~~~~----~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk----- 259 (396)
T COG0626 196 -PL----E-LGADIVVHSATKYLGGHSDVLGGVV-LTPNEE----LYELLFFAQRANTGAVLSPFDAWLLLRGLR----- 259 (396)
T ss_pred -hh----h-cCCCEEEEeccccccCCcceeeeEE-ecChHH----HHHHHHHHHHhhcCCCCCHHHHHHHHhccc-----
Confidence 11 1 2458999999999975555555554 354555 5555543333 2444556665555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-c----------------cCcceeEecCCCHHHHHHHhhhccE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-T----------------NQLGMFCFSGLTPYQVDRLAKEFHI 391 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~----------------~~~g~~~~~~~~~~~~~~ll~~~gI 391 (435)
-+....++..++...+.+.|++.+.- -.++ + ..||+|.|.=-+.+.+.++++.-.+
T Consensus 260 -----TL~~Rm~~~~~nA~~IA~~L~~~p~V--~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l 332 (396)
T COG0626 260 -----TLALRMERHNENALKIAEFLADHPKV--KKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKL 332 (396)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHhcCCCe--EEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCc
Confidence 34556677777888888888876531 1111 1 2466666552221555555554444
Q ss_pred EE---eCCC-------------------------------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 392 YM---TQDG-------------------------------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 392 ~i---~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
.. .-|| |+|++- |+++.+++-|.+.++.
T Consensus 333 ~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl---Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 333 FKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL---EDVEDLIADLEQALAK 394 (396)
T ss_pred cEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHh
Confidence 43 2221 999865 7888888888888764
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=133.30 Aligned_cols=335 Identities=17% Similarity=0.194 Sum_probs=216.0
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCC------CCCCCCc---ccHHHHHHHHHhHc
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEF------LESISAS---VSTKMVEESVKLVY 106 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~Y~~~~---g~~~lr~~ia~~l~ 106 (435)
+++.+++-...+ .+.|+|=..+ | ..++.+.++..... +... .-|+... ....|....++.++
T Consensus 14 i~~~i~~e~~rq-~~~ieLIASE----N---~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LF 85 (413)
T COG0112 14 IFEAIQQELERQ-REHIELIASE----N---FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLF 85 (413)
T ss_pred HHHHHHHHHHHH-hhceeeeecc----c---cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHh
Confidence 455554333322 4778887776 2 34556666655544 2111 2244332 23455666667778
Q ss_pred CCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH---hhCC--CCeeeeeecCCCCCCcC
Q 013839 107 GKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW---RDAQ--IPERTYHYYDPDSKSLD 181 (435)
Q Consensus 107 ~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---~~~g--~~~~~v~~~~~~~~~~d 181 (435)
+.+.. || ...+|+.|+..+ ++++++|||+|+-.+...++|...- ...| .+.+.|++ +.++..+|
T Consensus 86 ga~~a-----nV---QPhSGs~AN~av--~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~v-d~et~~ID 154 (413)
T COG0112 86 GAEYA-----NV---QPHSGSQANQAV--YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGV-DPETGLID 154 (413)
T ss_pred CCCcc-----cc---CCCCchHHHHHH--HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEeccc-ccccCccC
Confidence 87654 44 478999998888 8999999999999887777765432 1222 35777887 56778999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCC
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
.|++++...+ .++++++......|- .-+++++.++|.+.|+++++|.++ .++.-++..++ + ...
T Consensus 155 yD~~~k~a~e--~kPK~ii~G~SaY~r-----~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~--P------~~~ 219 (413)
T COG0112 155 YDEVEKLAKE--VKPKLIIAGGSAYSR-----PIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPN--P------LPH 219 (413)
T ss_pred HHHHHHHHHH--hCCCEEEECcccccc-----ccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCC--C------CCc
Confidence 9999999886 457888865433333 346789999999999999999995 44544432111 1 123
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHH-HHHHhCChhhHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL-VATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
..++.+|.+|++ +|-|-|.+. +.+++ +.+++.+...+...+-|..-..| .+-++.+. + +-..+++.
T Consensus 220 AdvVTtTTHKTl--rGPrGG~Il--~~~ee----l~kkin~aVFPg~qggpl~HviAakaVa~~Ea-l----~p~fk~Ya 286 (413)
T COG0112 220 ADVVTTTTHKTL--RGPRGGIIL--TNDEE----LAKKINSAVFPGLQGGPLMHVIAAKAVAFKEA-L----EPEFKEYA 286 (413)
T ss_pred cceEeCCcccCC--CCCCceEEE--eccHH----HHHHhhhhcCCccCCChHHHHHHHHHHHHHHH-c----ChhHHHHH
Confidence 578899999997 788877774 64556 88888886655444433332222 22233221 1 12336666
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec------CCCHHHHHHHhhhccEEEeCC-------------C-cE
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS------GLTPYQVDRLAKEFHIYMTQD-------------G-RI 399 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~ll~~~gI~i~pg-------------g-Ri 399 (435)
++..++.+.|.+.|.+.|+ ++.....-.++++ +++...++.+|.+.||.+-.. | ||
T Consensus 287 ~qVv~NAkaLAe~l~~~G~----~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRi 362 (413)
T COG0112 287 KQVVKNAKALAEALKERGF----KVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRI 362 (413)
T ss_pred HHHHHHHHHHHHHHHHcCC----eEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCcccee
Confidence 7777888888889888874 4544332233433 346778899999999999633 3 77
Q ss_pred Eec-----cCCCCcHHHHHHHHHHHHHh
Q 013839 400 SMA-----GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 400 s~~-----~~~~e~i~~~~~~l~~~l~~ 422 (435)
... ++.+++++++.+-|.+++..
T Consensus 363 Gtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 363 GTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred ccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 532 23677888888888888764
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-14 Score=139.68 Aligned_cols=329 Identities=17% Similarity=0.149 Sum_probs=197.7
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCC------CCCccc---HHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLES------ISASVS---TKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y------~~~~g~---~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|=.++ -..++.+.++...... ....+| ...... ..|....++.+++.+.... --||
T Consensus 148 ~~~l~LIASE-------N~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~-gaNV- 218 (586)
T PLN02271 148 FKGIELIASE-------NFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKW-GVNV- 218 (586)
T ss_pred hcCeeecccc-------ccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCccccc-ccce-
Confidence 5667776665 2345565655555442 222223 222222 2333334444555432100 0133
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH---------hhCCCC--eeeeeecCCCCCCcChHhHHHH
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW---------RDAQIP--ERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---------~~~g~~--~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
...+|+.|+..+ +.+++.|||+|+..+..++++.... ...|.. .++|++ +++++.+|.+++++.
T Consensus 219 --Qp~SGs~AN~aV--~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~-d~~~g~IDyd~lek~ 293 (586)
T PLN02271 219 --QPYSCTSANFAV--YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKV-NPQTGYIDYDKLEEK 293 (586)
T ss_pred --eeccHHHHHHHH--HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccc-ccccCccCHHHHHHH
Confidence 466899998888 8888999999999998887775532 223433 344445 355678999999985
Q ss_pred hhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 189 IKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 189 i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
... .++++|++....||. .+ +++++.++|+++|+++++|.++.. +...+. .+.+ .....++.+|
T Consensus 294 a~~--~rPKLII~g~Saypr--~~---D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~--~~sP------~~~aDvvt~T 358 (586)
T PLN02271 294 ALD--FRPKILICGGSSYPR--EW---DYARFRQIADKCGAVLMCDMAHISGLVAAKE--CVNP------FDYCDIVTST 358 (586)
T ss_pred hhh--cCCeEEEECchhccC--cC---CHHHHHHHHHHcCCEEEEECcccccccccCc--CCCC------CcCCcEEEeC
Confidence 432 678999998778883 33 456889999999999999999532 222211 0001 1235688999
Q ss_pred ccccccccCCcccEEEEEecChhH----------------HHHHHHHHHHHhhccc-cCCChhHHHHHHHHhCChhhHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQ----------------AAAIRSQIQQIARAMY-GSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~-~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
.+|++ .|-|-|.+. + +++. -.++.+++.+...+.. .++......+.+.++....
T Consensus 359 THKtL--rGPrGG~I~--~-r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~---- 429 (586)
T PLN02271 359 THKSL--RGPRGGIIF--Y-RKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA---- 429 (586)
T ss_pred CcccC--CCCCceEEE--e-cccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh----
Confidence 99997 566667775 3 3210 0014455554443322 2233333333444444211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeE-ec-----CCCHHHHHHHhhhccEEEe----------
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC-FS-----GLTPYQVDRLAKEFHIYMT---------- 394 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~ll~~~gI~i~---------- 394 (435)
....+++.++..++.+.|.+.|.+.|+ ++.....-.++ ++ +++...+++.|++.||.+-
T Consensus 430 -~~efk~Ya~QVv~NAkaLA~~L~~~G~----~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~ 504 (586)
T PLN02271 430 -TPEYKAYMQQVKKNAQALASALLRRKC----RLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGT 504 (586)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHCCC----eEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCC
Confidence 122367788888899999999988885 34332222233 33 3467888999999999883
Q ss_pred --CCC-cEEec-----cCCCCcHHHHHHHHHHHHH
Q 013839 395 --QDG-RISMA-----GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 395 --pgg-Ris~~-----~~~~e~i~~~~~~l~~~l~ 421 (435)
|+| ||... ++.+++++++.+-|.++++
T Consensus 505 ~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 505 ISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 334 88632 3467888888888887775
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=142.49 Aligned_cols=284 Identities=14% Similarity=0.083 Sum_probs=162.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCC----C--CEEEEcCCCChhhHHHHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP----E--SHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~----g--d~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
.++|.+.|-+.+.-.++. +.++.. .++..|+++-+..+ +.++..+ + -.|+...|.|+.|........-..
T Consensus 45 s~eL~~~Ir~LH~~VGNA-vt~gr~-IV~GtGsTQL~~Aa--lyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~ 120 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNA-VTDGRY-IVFGTGSTQLFNAA--LYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRL 120 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB---TTSE-EEEECHHHHHHHHH--HHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTT
T ss_pred cHHHHHHHHHHHHHhccc-cccCcE-EEEcCCHHHHHHHH--HHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccC
Confidence 477888887776222221 222332 22677777777766 4444211 1 478999999999987765443222
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
....= |...| . .+..+.+-+=++++||||.|..-. . +++..+..+|.|-||..=.|.+
T Consensus 121 y~w~G-da~~~-------~---~~~~~~~~IElVTSPNNPDG~lr~-----~---V~~g~~~k~I~D~AYYWPhyTp--- 178 (363)
T PF04864_consen 121 YKWAG-DASNF-------K---NSDNPSPYIELVTSPNNPDGQLRE-----A---VLNGSSGKVIHDLAYYWPHYTP--- 178 (363)
T ss_dssp EEEEE-ECCCG-------T---T-S-CCGEEEEEESS-TTT--------------SSTTTEEEEEEE-TT-STTTS----
T ss_pred ccccc-cHHhh-------c---cCCCCCCeEEEEeCCCCCcccccc-----h---hcCCCCcceeeeeeeecccccc---
Confidence 22221 12211 1 111145788899999999997521 2 2355566789999997766653
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+. ...+.+|.+.|+||.-|.+|.|+||.++ .+++ +.+++.++....+.+++.=+|.-++.+|+.--
T Consensus 179 ----I~---~~aD~DiMLFT~SK~TGHAGSR~GWAlV--KD~~----Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~- 244 (363)
T PF04864_consen 179 ----IT---APADHDIMLFTLSKLTGHAGSRFGWALV--KDEE----VAKKMTKYMELNTIGVSRDSQLRALKILKVVL- 244 (363)
T ss_dssp ---------S-B--SEEEEEHHHHCS-GGG-EEEEEE--S-HH----HHHHHHHHHHHHCSS--HHHHHHHHHHHHHHH-
T ss_pred ----cC---CCCCCceEEEEEecccCccccccceeee--cCHH----HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH-
Confidence 21 2246789999999999999999999974 6888 88899999888899999999988888775311
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhCC-------CC---CccccccCcceeEecCCCH---HHHHHHhhh
Q 013839 328 KSLWI------DEVKIMADRIQRKRTTLRQNLEKLGS-------SL---NWEHITNQLGMFCFSGLTP---YQVDRLAKE 388 (435)
Q Consensus 328 ~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~---~~~~~~~~~g~~~~~~~~~---~~~~~ll~~ 388 (435)
+.+. +...--++.++++-+.|.+.+..-.. |. .+........-|.|+++.. +.+...|++
T Consensus 245 -~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~ 323 (363)
T PF04864_consen 245 -DGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLRE 323 (363)
T ss_dssp -HHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHC
T ss_pred -hcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHh
Confidence 0000 01122233444444555555543221 00 1111222345699998742 378888899
Q ss_pred ccEEEeCC---C------cEEeccCCCCcHHHHHHHHHHH
Q 013839 389 FHIYMTQD---G------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 389 ~gI~i~pg---g------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
.||..+.| | |+|+.. ++++++.++++|.++
T Consensus 324 ~~I~tr~G~~fga~~ryVRlSml~-~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 324 AKIITRSGVLFGADSRYVRLSMLK-RDDDFDQLLERLSKL 362 (363)
T ss_dssp TTEEEEEGGGGTS-TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred CCcccCCCCccCCCCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence 99999988 3 999976 889999999999764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=143.44 Aligned_cols=288 Identities=17% Similarity=0.170 Sum_probs=169.1
Q ss_pred HHHHHHHhHcCCCCccccCCCee-eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh----------CCC
Q 013839 97 MVEESVKLVYGKDSDVVKEGRSA-GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD----------AQI 165 (435)
Q Consensus 97 lr~~ia~~l~~~~~~~~~~~~v~-~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----------~g~ 165 (435)
.|+.+++++ +.. ++++. .+.+.+|++|+.++ +.+++++||+|++....+..+...... .+.
T Consensus 85 ar~~~a~lf-~a~-----~~~~~~~~~~~sgt~an~~v--~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~ 156 (452)
T PTZ00094 85 CQKRALEAF-GLD-----PEEWGVNVQPYSGSPANFAV--YTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYF 156 (452)
T ss_pred HHHHHHHHh-CCC-----cccceeecCCCchHHHHHHH--HHHhcCCCCEEEecccccCCcccccccccccccccceeee
Confidence 344566666 332 33443 11237889998887 677788999999977666554332211 112
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
++..++. +. ++.+|+++|++.+++. +++++++. ++.+|...+.+ +|.++|+++|+++++|+++. ++.-+.
T Consensus 157 ~~~~~~~-~~-~g~id~~~L~~~l~~~--~~~lvi~~--~s~~g~~~di~---~I~~i~~~~ga~l~vDaaq~-~G~i~~ 226 (452)
T PTZ00094 157 ESLPYQV-NE-KGLIDYDKLEELAKAF--RPKLIIAG--ASAYPRDIDYK---RFREICDSVGAYLMADIAHT-SGLVAA 226 (452)
T ss_pred eeeeccc-CC-CCCcCHHHHHHHHHHh--CCCEEEEe--CCCCCCccCHH---HHHHHHHHcCCEEEEeccch-hccccC
Confidence 3334444 22 4789999999999642 34555553 34588777655 78888999999999999953 332111
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~ 324 (435)
+.. + . +....++++.|.+|+++ |.+.|++. + +++..+.+...+....... ..+++.....++..+++.
T Consensus 227 ~~~--~---~-~~~~~D~l~~S~hK~l~--GP~Gg~l~--~-~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~ 295 (452)
T PTZ00094 227 GVL--P---S-PFPYADVVTTTTHKSLR--GPRSGLIF--Y-RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKE 295 (452)
T ss_pred CCC--C---C-CCCCCcEEEcCCccCCC--CCCceEEE--E-ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHH
Confidence 100 0 0 11135688999999773 33336765 3 4442222322222211111 123444444445455532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeE-ec---CCCHHHHHHHhhhccEEEe-C--
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFC-FS---GLTPYQVDRLAKEFHIYMT-Q-- 395 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~-~~---~~~~~~~~~ll~~~gI~i~-p-- 395 (435)
-. ....+.+++++.++++++.+.|++.|. .+..+ ...... .+ +.+.+.+..+|+++||.+. +
T Consensus 296 ~~-----~~~~~~~~~~i~~l~~~l~~~L~~~g~----~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~ 366 (452)
T PTZ00094 296 VQ-----SPEWKEYAKQVLKNAKALAAALEKRGY----DLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTI 366 (452)
T ss_pred Hh-----ChhHHHHHHHHHHHHHHHHHHHHhCCc----EEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccC
Confidence 10 134466778889999999999987663 23221 111111 11 3466777777788899994 2
Q ss_pred ---------CC-cEEeccC-----CCCcHHHHHHHHHHHHHh
Q 013839 396 ---------DG-RISMAGV-----TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 396 ---------gg-Ris~~~~-----~~e~i~~~~~~l~~~l~~ 422 (435)
++ |+|+... ++++++++++.|++++..
T Consensus 367 p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 367 PGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 22 8886432 379999999999998874
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-14 Score=135.98 Aligned_cols=155 Identities=12% Similarity=-0.026 Sum_probs=115.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 169 (435)
...+++.++++..+. +.+ .+.+|+.|+.++ +++++.+||+|++++..|.+.. ..+...|++++.
T Consensus 71 ~~~le~~la~l~g~~-------~~v---~fsSG~~Ai~~a--l~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (437)
T PRK05613 71 VEALENRIASLEGGV-------HAV---AFASGQAAETAA--ILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTF 138 (437)
T ss_pred HHHHHHHHHHHhCCC-------eEE---EeCCHHHHHHHH--HHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEE
Confidence 457778888877332 123 577888898776 6777899999999999998764 345678988888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. . .|+++++++++ ++++++++.++.||+|.+.+ +++|.++|+++|+++|+|.++...... .
T Consensus 139 vd~--~----~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~----~- 201 (437)
T PRK05613 139 VEN--P----DDPESWQAAVQ---PNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALV----R- 201 (437)
T ss_pred ECC--C----CCHHHHHHhCC---ccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccccc----C-
Confidence 851 2 27899999998 67888988999999997765 669999999999999999996332111 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+. + ..-++++.|++|.++-.|.-+|.++
T Consensus 202 -p~----~-~GaDivv~S~~K~l~G~gd~~gG~v 229 (437)
T PRK05613 202 -PL----E-LGADVVVASLTKFYTGNGSGLGGVL 229 (437)
T ss_pred -hH----H-hCCCEEEeeccceecCCCcceeEEE
Confidence 11 1 1347889999999986676666665
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=129.04 Aligned_cols=165 Identities=18% Similarity=0.097 Sum_probs=123.7
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH-HHHhhCCCCeeeeeec
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH-NIWRDAQIPERTYHYY 173 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~ 173 (435)
.++++.+++++. .+ ++++. ++.||++|+.++ +..+..+|++|+++.++|.+.. ..+...|++++.++..
T Consensus 3 ~~~~~~l~~~~~-~~-----~~~~~--~~~~~t~a~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 3 EELEEKLARLLQ-PG-----NDKAV--FVPSGTGANEAA--LLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHcC-CC-----CCcEE--EeCCcHHHHHHH--HHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccC
Confidence 578899998883 22 44666 888999999998 6666778999999999998888 7888899999998873
Q ss_pred CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 174 DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+......+.+.+++... .++++++++++++||+|...+. ++|.++|+++++++|+|++|..+...... .
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~------~ 141 (170)
T cd01494 73 DAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG------V 141 (170)
T ss_pred CCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc------c
Confidence 22222223334544332 2578999999999999998876 58888899999999999999887764210 0
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
. ......++++.|++|.++. .++|+++
T Consensus 142 ~-~~~~~~d~~~~s~~K~~~~--~~~G~l~ 168 (170)
T cd01494 142 L-IPEGGADVVTFSLHKNLGG--EGGGVVI 168 (170)
T ss_pred c-cccccCCEEEEEcccccCC--CceEEEE
Confidence 1 1123467888999999984 6789986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=141.04 Aligned_cols=256 Identities=14% Similarity=0.027 Sum_probs=154.1
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
.-..++.+++++++... +.+ .+++|+.|+.++ +.++ +++||+|++|..+|......+...|++++.+
T Consensus 25 ~~~~~fE~~~a~~~g~~--------~~~--~~~sgt~Al~~a--l~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~ 92 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK--------YAV--AVSSGTSALHLA--LRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFV 92 (363)
T ss_dssp HHHHHHHHHHHHHHTSS--------EEE--EESSHHHHHHHH--HHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHhCCC--------eEE--EeCChhHHHHHH--HHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEE
Confidence 34678999999998433 344 799999999998 4443 5699999999999999999999999999999
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
++ +++++.+|++.++++++ +++++|++. +.-|.. .++++|.++|++||++||+|.+.........
T Consensus 93 Di-~~~~~~id~~~~~~~i~---~~t~ai~~~---h~~G~~---~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g----- 157 (363)
T PF01041_consen 93 DI-DPETLNIDPEALEKAIT---PKTKAILVV---HLFGNP---ADMDAIRAIARKHGIPLIEDAAQAFGARYKG----- 157 (363)
T ss_dssp -B-ETTTSSB-HHHHHHHHH---TTEEEEEEE----GGGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETT-----
T ss_pred ec-cCCcCCcCHHHHHHHhc---cCccEEEEe---cCCCCc---ccHHHHHHHHHHcCCcEEEccccccCceeCC-----
Confidence 99 57889999999999999 788888873 344443 3788999999999999999999544332110
Q ss_pred HHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccc-----------------cCCC
Q 013839 251 AIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY-----------------GSPP 311 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~ 311 (435)
+.....+ .+.+.|| +|.+. .|. .|.++ +.+++ +.++++.+..... ..++
T Consensus 158 --~~~G~~g--d~~~fSf~~~K~i~-~ge-GG~v~--~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~ 225 (363)
T PF01041_consen 158 --RPVGSFG--DIAIFSFHPTKIIT-TGE-GGAVV--TNDPE----LAERARALRNHGRSRDAFRRYRHELPPGYNFRMS 225 (363)
T ss_dssp --EETTSSS--SEEEEESSTTSSS--SSS--EEEE--ESTHH----HHHHHHHHTBTTEETSECSTTEESSSS--B-B-B
T ss_pred --EeccCCC--CceEecCCCCCCCc-CCC-CeeEE--ecHHH----HHHHhhhhhccCcCccccccccccccCCcccccH
Confidence 1111112 4555565 69885 443 25664 65677 6666655432111 1122
Q ss_pred hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--cceeEec---C----CCHHHH
Q 013839 312 VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFS---G----LTPYQV 382 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~---~----~~~~~~ 382 (435)
.+....+..-| +.+++..++-+++.+.+.+.|..++.-......... ..++.+. . .+.+.+
T Consensus 226 ~~~AAigl~QL----------~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l 295 (363)
T PF01041_consen 226 ELQAAIGLAQL----------KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDEL 295 (363)
T ss_dssp HHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHH
T ss_pred HHHHHHHHHHH----------HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHH
Confidence 22211111112 334444455556666777788776531001111111 1222222 2 245666
Q ss_pred HHHhhhccEEEeCC
Q 013839 383 DRLAKEFHIYMTQD 396 (435)
Q Consensus 383 ~~ll~~~gI~i~pg 396 (435)
.+.|++.||.+.+.
T Consensus 296 ~~~L~~~GI~~~~~ 309 (363)
T PF01041_consen 296 VEALRARGIETRPH 309 (363)
T ss_dssp HHHHHHTTBEEBCS
T ss_pred HHHHHHCCCccccc
Confidence 55667789999864
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-14 Score=132.39 Aligned_cols=342 Identities=15% Similarity=0.086 Sum_probs=204.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCC-cccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISA-SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..||+..|+-+.--|+.. +.+.+++.+++..+ ..|..+ .-.-++-|.+.+.+.. .+.|- ++++
T Consensus 50 vDGn~YIDy~~~~Gp~ilGH~~-p~V~~Av~~~l~~G--~~fg~Pte~Ei~~Aell~~~~p~-------~e~vr--fvnS 117 (432)
T COG0001 50 VDGNEYIDYVLGWGPLILGHAH-PAVVEAVQEQLERG--LSFGAPTELEVELAELLIERVPS-------IEKVR--FVNS 117 (432)
T ss_pred CCCCEeeehhccCcccccCCCC-HHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHhcCc-------ccEEE--Eecc
Confidence 4678899988887322233222 23445555555555 234443 3333455555555422 24677 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCC--CC------eeeeeecCCCC----CCcChHhHHHHhhcC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQ--IP------ERTYHYYDPDS----KSLDFAALMDDIKNA 192 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g--~~------~~~v~~~~~~~----~~~d~e~l~~~i~~~ 192 (435)
||+|...+..+.+-...-|+|+..+-+|.++.+.+. ..| .. ...+|-....+ ---|++.+++++++.
T Consensus 118 GTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~ 197 (432)
T COG0001 118 GTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEY 197 (432)
T ss_pred hhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHc
Confidence 999988886555545555999999999988876543 222 11 00111100000 012889999999987
Q ss_pred CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
+++..+|++.....-.|.+. .++.+++|.++|++||+++|.||+..+|...-. ......-. .+| +.++.|.
T Consensus 198 g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g--Gaq~~~gi--~PD----lttlGKi 269 (432)
T COG0001 198 GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG--GAQGYYGV--EPD----LTTLGKI 269 (432)
T ss_pred CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc--ccccccCc--Ccc----hhhhhhh
Confidence 66777777755444456644 566799999999999999999999877765410 01111111 111 4568999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
.| .|+.+|..-+ .++ +++.+.... +..+.+-++++..|..+.|..-. .. ....+.+.+.-.+.++-
T Consensus 270 IG-GGlP~ga~gG---r~e----iM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~--~~-~~~y~~l~~~~~~L~~g 338 (432)
T COG0001 270 IG-GGLPIGAFGG---RAE----IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELM--TE-EGVYERLDALGERLAEG 338 (432)
T ss_pred hc-CCcceeeecc---HHH----HHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHH--hc-ccHHHHHHHHHHHHHHH
Confidence 99 9999998843 777 777555432 23455566666666655554221 00 01123333333444445
Q ss_pred HHHHHHhhCCCCCccccccCcceeEec--C--C---------CH----HHHHHHhhhccEEEeCCC----cEEeccCCCC
Q 013839 349 LRQNLEKLGSSLNWEHITNQLGMFCFS--G--L---------TP----YQVDRLAKEFHIYMTQDG----RISMAGVTTG 407 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~~~~g~~~~~--~--~---------~~----~~~~~ll~~~gI~i~pgg----Ris~~~~~~e 407 (435)
+.+.+.+.+.+ +.+ ...+++|.+. . . +. .++..+| ++||++.|+. -+|... +++
T Consensus 339 l~~~~~~~g~~--~~v-~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ps~~ea~flS~ah-te~ 413 (432)
T COG0001 339 LRAAAERHGIP--LTV-NRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLAPSQFEAGFLSTAH-TEE 413 (432)
T ss_pred HHHHHHHhCCC--eEE-eeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccCCccccceeeeccc-CHH
Confidence 55555666754 332 2344555432 1 1 11 2445554 5899999984 556544 899
Q ss_pred cHHHHHHHHHHHHHhhh
Q 013839 408 NVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~~~ 424 (435)
+|++.++++.++++++.
T Consensus 414 di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 414 DIDRTLEAADEAFKELA 430 (432)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=133.04 Aligned_cols=210 Identities=12% Similarity=0.055 Sum_probs=135.2
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH----HHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH----NIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 169 (435)
..+|-+.++++..+. ..+ .+++|+.|+.++ +.+++.+||+|+++.+.|.+.. ..+...|++++.
T Consensus 66 ~~~lE~~la~leg~~--------~av--~~sSG~aAi~~a--l~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~f 133 (384)
T PRK06434 66 VQAFEEKYAVLENAE--------HAL--SFSSGMGAITSA--ILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDY 133 (384)
T ss_pred HHHHHHHHHHHhCCC--------cEE--EeCCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEE
Confidence 356777777776332 233 799999999988 7778899999999988765554 456678999998
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++..+.+++. +. ++++++|++.+|.|||+.+ .++++|+++|++++ +++|.++..-...
T Consensus 134 vd~~~~~~~~---------l~--~~~tklv~~e~~snpt~~v---~Di~~I~~la~~~~--lvVD~t~~s~~~~------ 191 (384)
T PRK06434 134 IDTDRLNSLD---------FD--PSNYDLIYAESITNPTLKV---PDIKNVSSFCHEND--VIVDATFASPYNQ------ 191 (384)
T ss_pred ECCCChhhee---------ec--CCCeeEEEEEcCCCCCcee---ecHHHHHHHHHHcC--eEEECCCCCcccC------
Confidence 8763222221 22 1368999999999999876 46779999999998 4569995321111
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
.++ + ..-++++.|.+|.++-+|--+|-++ ++.+++ +.++++..........+.+..+.+..-|
T Consensus 192 ~pl----~-~gaDivv~S~tK~i~G~~d~~gG~v-v~~~~~----~~~~~~~~~~~~G~~~~~~~A~l~~~gL------- 254 (384)
T PRK06434 192 NPL----D-LGADVVIHSATKYISGHSDVVMGVA-GTNNKS----IFNNLVERRKTLGSNPDPIQAYLALRGL------- 254 (384)
T ss_pred Cch----h-cCCCEEEeecccccCCCCCceEEEE-ecCcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhCC-------
Confidence 122 1 2347888899999975553344444 254565 5555554332233334443322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++.+++...+.+.|+.++
T Consensus 255 ---~tL~~R~~r~~~~a~~~a~~L~~~p 279 (384)
T PRK06434 255 ---KTLGLRMEKHNKNGMELARFLRDSK 279 (384)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3355666777778888888888775
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=136.07 Aligned_cols=340 Identities=15% Similarity=0.093 Sum_probs=191.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-| ...+++.+++.+++...... ..+..-..+|-+.+++.+.+ .+.+. ++++|
T Consensus 96 ~dG~~yiD~~~g~g~~~lG-h~~p~v~~av~~ql~~~~~~-~~~~~~~~~lAe~l~~~~p~-------~~~v~--f~~SG 164 (474)
T PLN02482 96 VDGNEYIDYVGSWGPAIIG-HADDEVLAALAETMKKGTSF-GAPCLLENVLAEMVIDAVPS-------VEMVR--FVNSG 164 (474)
T ss_pred CCCCEEEEecccccccccC-CCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHhCCC-------CCEEE--EeCCh
Confidence 3567788887765211122 12234555555555543222 11222222344444443311 24677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hC--CCC------eeeeeecCCCC----CCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DA--QIP------ERTYHYYDPDS----KSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~--g~~------~~~v~~~~~~~----~~~d~e~l~~~i~~~~ 193 (435)
++|...+..+.......++|+....+|.++...+. .. +.. ...+|.....+ .--|++.+++.+.+++
T Consensus 165 sEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~ 244 (474)
T PLN02482 165 TEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANK 244 (474)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCC
Confidence 99999997666555444788888888888653211 10 000 00011000000 0017888998887655
Q ss_pred CCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
.+..+|++.....-.|.+.+ ++.+++|.++|++||+++|+||+..++..+. ......+ +... + +.+++|.+
T Consensus 245 ~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~----~ga~~~~-gv~P-D--i~t~gK~l 316 (474)
T PLN02482 245 GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY----GGAQEYF-GITP-D--LTTLGKVI 316 (474)
T ss_pred CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc----chHhHHh-CCCC-C--EEEecchh
Confidence 56778888776666787664 6789999999999999999999987763321 1222222 2212 2 24789999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
| .|+.+|.+++ +++ +++.+.... ...+.+.++++..++.+.|+.-. + ....+++.++.++|
T Consensus 317 g-gG~Pigav~g---~~e----i~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~------~--~~~~~~~~~~g~~l 380 (474)
T PLN02482 317 G-GGLPVGAYGG---RRE----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQ------Q--PGTYEYLDKITKKL 380 (474)
T ss_pred h-CCCceEEEEE---cHH----HHHhhccCCCcccccCcchhHHHHHHHHHHHHHHh------c--cCHHHHHHHHHHHH
Confidence 8 8899998854 777 777664211 12344455666555555553210 1 23445555566666
Q ss_pred HHHHHhhCCCCCcccc-ccCcceeEe-c--C-C---------CH---HHHHHHhhhccEEEeCCC----cEEeccCCCCc
Q 013839 350 RQNLEKLGSSLNWEHI-TNQLGMFCF-S--G-L---------TP---YQVDRLAKEFHIYMTQDG----RISMAGVTTGN 408 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~-~~~~g~~~~-~--~-~---------~~---~~~~~ll~~~gI~i~pgg----Ris~~~~~~e~ 408 (435)
++.|+++....++... ...+|++.. + + . +. ..+.+.+.++||.+.|.+ .+++. .++++
T Consensus 381 ~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~~psl~-ht~~d 459 (474)
T PLN02482 381 IQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSLA-HTEED 459 (474)
T ss_pred HHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCCcCCCC-CCHHH
Confidence 6666554321111222 233444321 1 1 0 11 133333446899998864 24443 38999
Q ss_pred HHHHHHHHHHHHHh
Q 013839 409 VNYLANAIHEVTRS 422 (435)
Q Consensus 409 i~~~~~~l~~~l~~ 422 (435)
|+++++++.+++++
T Consensus 460 Id~~l~al~~~l~~ 473 (474)
T PLN02482 460 IDFTIAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=135.58 Aligned_cols=343 Identities=13% Similarity=0.033 Sum_probs=190.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...+|+..|.....-| ...+.+++++.+++...... ... .-..+....+|+.+...-... ..+++. ++++|
T Consensus 51 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~~-~~~-~~~~~~~~~lAe~L~~~~p~~-~~~~v~--f~~SG 124 (441)
T PRK05769 51 VDGNVYLDFNAGIAVTNVG-HAHPKVVKAVKEQAEKFLHY-SLT-DFYYEPAVELAERLVEIAPGG-FEKKVF--FTNSG 124 (441)
T ss_pred CCCCEEEECCCchhhcccC-CCCHHHHHHHHHHHHhccCc-cCc-ccCCHHHHHHHHHHHHhCCCC-CCCEEE--ECCch
Confidence 4567889988875311122 12233444445554422111 000 001123344455442211000 024677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCC-------------CeeeeeecCCCC--CC-c--------C
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQI-------------PERTYHYYDPDS--KS-L--------D 181 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~--~~-~--------d 181 (435)
++|++.+..+.......++|+...-+|.+....... .+. .+..++..+... +. - +
T Consensus 125 sEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T PRK05769 125 TESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAV 204 (441)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHH
Confidence 999999976555444447888888888777543221 111 112222210000 00 0 1
Q ss_pred hHhHHH-Hhhc--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 182 FAALMD-DIKN--APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 182 ~e~l~~-~i~~--~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++.+++ .+++ .+++..+|++.....-.|... +++.+++|.++|++||+++|.||++.+++..+. .+....+ +
T Consensus 205 ~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~---~~a~~~~-g 280 (441)
T PRK05769 205 LDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK---MFAIEHF-G 280 (441)
T ss_pred HHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---eehhhcc-C
Confidence 233555 2322 235677888776666677755 677899999999999999999999987765431 1122222 2
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
....++ ++||.++ .|+++|++++ +++ +...+... ...+.+.+++++.++.+.|+.- +. .
T Consensus 281 v~pDiv---t~~K~l~-~G~p~gav~~---~~~----i~~~~~~~-~~~T~~g~p~~~aaa~a~L~~l-------~~--~ 339 (441)
T PRK05769 281 VEPDII---TLAKAIA-GGLPLGAVIG---RAE----LMFLPPGS-HANTFGGNPVAAAAALATLEEL-------EE--G 339 (441)
T ss_pred CCCCEE---EEccccc-CCcccEEEEE---ehh----hhhcCCCC-CCCCCCcCHHHHHHHHHHHHHH-------HH--H
Confidence 212233 4899999 7899999864 666 55433221 2334455777777777776432 11 4
Q ss_pred HHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC-------C---HHHHHHHhhhccEEEeCCC----cEEe
Q 013839 338 MADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL-------T---PYQVDRLAKEFHIYMTQDG----RISM 401 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~-------~---~~~~~~ll~~~gI~i~pgg----Ris~ 401 (435)
..++.+++.++|++.|+++. .+ .+......| .+.-+.+ + ...+.+.+.++||.+.+.| ||+.
T Consensus 340 ~~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p 417 (441)
T PRK05769 340 LLENAQKLGEYLRKELKELKEKYE-FIGDVRGLG-LMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIP 417 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-Ceeeeecce-EEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeC
Confidence 55667777777777776653 11 011222223 2332222 1 1223333346899998865 6764
Q ss_pred c-cCCCCcHHHHHHHHHHHHHh
Q 013839 402 A-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
. ..+++++++++++|.+++.+
T Consensus 418 ~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 418 PLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 3 24899999999999998864
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-13 Score=133.75 Aligned_cols=344 Identities=11% Similarity=0.045 Sum_probs=194.6
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.....-| -..+.+++++.+++.... ...|.. ....++.+.+++... .. -+++. ++
T Consensus 49 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~q~~~~~~~~~~~~~~-~~~~~la~~l~~~~p-~~-----~~~v~--f~ 118 (460)
T PRK06541 49 DRGKRYLDGLAGLFVVQVG-HGRAELAEAAAKQAGTLAFFPLWSYAH-PPAIELAERLAALAP-GD-----LNRVF--FT 118 (460)
T ss_pred CCCCEEEECCccHHhccCC-CCCHHHHHHHHHHHhhCcCccccccCC-HHHHHHHHHHHHhCC-CC-----cCEEE--Ec
Confidence 4678899998874211122 123344454555554221 111211 112234444444321 11 24677 89
Q ss_pred CCchhHHHHHHHHHHHh----C-C-CCEEEEcCCCChhhHHHHh-hCCC------------CeeeeeecCCCC---CCcC
Q 013839 124 LSGTGACRLFAEFQRRF----H-P-ESHIYFPDPTWSNHHNIWR-DAQI------------PERTYHYYDPDS---KSLD 181 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~----~-~-gd~Vlv~~p~y~~~~~~~~-~~g~------------~~~~v~~~~~~~---~~~d 181 (435)
++|++|++.+..+.... . + ..+|+...-+|.+...... ..|. .+..+|..+... ++-+
T Consensus 119 ~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 198 (460)
T PRK06541 119 TGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDD 198 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCC
Confidence 99999999997655543 1 2 3678888888876643222 1111 112222210000 1112
Q ss_pred --------hHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 182 --------FAALMDDIKNA-PDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 182 --------~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
++.+++.+.+. +....+|++...++++|.+.+ .+.+++|.++|++||+++|.||++.+|+..+ ..+.
T Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G---~~~a 275 (460)
T PRK06541 199 PEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG---EMFG 275 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hhhh
Confidence 35677777542 345667776666999999865 8889999999999999999999998885432 1122
Q ss_pred HHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHhh----ccccCCChhHHHHHHHHhCChh
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIAR----AMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
...+ +.... ++ ++||.++ .|+ ++|++++ +++ +.+.+..... ..+.+.++++..++.+.|+.-
T Consensus 276 ~~~~-gv~PD-iv--t~gK~l~-~G~~pigav~~---~~~----i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l- 342 (460)
T PRK06541 276 CERF-GYVPD-II--TCAKGIT-SGYSPLGAMIA---SDR----LFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIF- 342 (460)
T ss_pred hhhc-CCCCC-EE--Eeccccc-CCccceeEEEE---cHH----HHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHH-
Confidence 2222 22222 22 5899999 887 9999974 777 6665543211 124445556555555554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec--C-------CCH--------HHHHHHhhhc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--G-------LTP--------YQVDRLAKEF 389 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~-------~~~--------~~~~~ll~~~ 389 (435)
..+...++++++.++|.+.|+++..-..+......|.++.+- . ++. ..+...+.++
T Consensus 343 -------~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (460)
T PRK06541 343 -------EREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEA 415 (460)
T ss_pred -------HhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhC
Confidence 012355777788888888887763100112234455444432 1 000 1233334568
Q ss_pred cEEEeCC--C----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 390 HIYMTQD--G----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 390 gI~i~pg--g----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
||.+.+. | ||+.. ..+++++++++++|.+++++.
T Consensus 416 Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 416 GLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred CeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999863 3 67764 248999999999999998754
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=134.51 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=148.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
..+.+.+.|..+.. .+-++.+..++...+.... +++. +.|....+....|+.+|+++... +.+|. +|
T Consensus 39 ~~~~~~vyld~~at--~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd------~~dIi--Ft 108 (428)
T KOG1549|consen 39 HHGTRPVYLDNQAT--GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD------PSDIV--FT 108 (428)
T ss_pred cCCCccEEEecCcC--CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC------CCcEE--Ee
Confidence 45667888888862 1111333334443333333 2222 23344455788999999999444 34688 99
Q ss_pred CCchhHHHHHHHHHHH-hCCCC----EEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 124 LSGTGACRLFAEFQRR-FHPES----HIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~-~~~gd----~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
.|+|+++.++ +..+ +..+| +|++..-.|+.... .++..|++++++|. ++++..|.+++++.++ ++
T Consensus 109 s~ATEs~Nlv--l~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv--~~~~~~d~~~~~~~i~---~~ 181 (428)
T KOG1549|consen 109 SGATESNNLV--LKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPV--EDSGLVDISKLREAIR---SK 181 (428)
T ss_pred CCchHHHHHH--HHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEecc--CccccccHHHHHHhcC---CC
Confidence 9999999999 5544 44667 89988877766644 45677899999998 3567899999999999 89
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
|+++.+...+|-+|+.++.+ +|+++|+++++.+++|.+ +..+--+. ++..+ +-+++..|.+|.||.+
T Consensus 182 T~lv~I~~Vnn~~gv~~Pv~---EI~~icr~~~v~v~~DaA-QavG~i~v-----DV~el----n~D~~s~s~HK~ygp~ 248 (428)
T KOG1549|consen 182 TRLVSIMHVNNEIGVLQPVK---EIVKICREEGVQVHVDAA-QAVGKIPV-----DVQEL----NADFLSISAHKIYGPP 248 (428)
T ss_pred ceEEEEEecccCccccccHH---HHHHHhCcCCcEEEeehh-hhcCCccc-----cHHHc----CchheeeecccccCCC
Confidence 99999999999999999865 899999999999999999 44432211 23222 4467788999999999
Q ss_pred CCcccEEEE
Q 013839 276 GHRVGCLSI 284 (435)
Q Consensus 276 G~RvG~~~~ 284 (435)
| +|++.+
T Consensus 249 ~--iGaLYv 255 (428)
T KOG1549|consen 249 G--IGALYV 255 (428)
T ss_pred c--ceEEEE
Confidence 9 788863
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-13 Score=131.49 Aligned_cols=291 Identities=16% Similarity=0.144 Sum_probs=181.2
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP 175 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 175 (435)
+.++.+++.+ +.. ++++.+.+|+|||+++..+.....-+.++++|++++-.+......++..|.+...++..
T Consensus 69 ~~~~~~a~l~-g~~-----~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~-- 140 (380)
T PRK02769 69 DVMNFFAELF-KIP-----FNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL-- 140 (380)
T ss_pred HHHHHHHHHh-CCC-----CCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC--
Confidence 4445555555 322 23444558999999976553222224678999999988888888888899988888872
Q ss_pred CCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC---ceeeeeccCCCccCCCCcccHHHH
Q 013839 176 DSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG---HFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 176 ~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~---~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+++.+|+++|++.+.+...++.+++++.++|+||.+-+. ++|.++|++|| +++.+|.++..+...-.+ ..+++
T Consensus 141 ~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi---~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~-~~~~~ 216 (380)
T PRK02769 141 PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNI---KEIQEILKKIGIDDYYIHADAALSGMILPFVN-NPPPF 216 (380)
T ss_pred CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCH---HHHHHHHHHhCCCceEEEEEecccceeecccC-ccccC
Confidence 357899999999998543458999999999999998765 58899999998 799999998665432110 00011
Q ss_pred HHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-------ccccCCChhHHHHHHHHhCCh
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-------AMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~q~~~~~~l~~~ 325 (435)
.+ ...-+.+..|.+|.++.| ..+|.+.+ .++ ....+..... ....+.+.....++-.+|..-
T Consensus 217 -d~--~~~vDsis~s~HK~~~~P-~g~G~l~~---r~~----~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~l 285 (380)
T PRK02769 217 -SF--ADGIDSIAISGHKFIGSP-MPCGIVLA---KKK----YVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSL 285 (380)
T ss_pred -Cc--cCCCCEEEECCcccCCCC-CCcEEEEE---ehh----hhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHH
Confidence 11 113456778999998733 45787753 445 3333211000 111222223333333333321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCC-cEEecc-
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDG-RISMAG- 403 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg-Ris~~~- 403 (435)
+ .+..++..++..+..+++.+.|++.|.+ ....|......|-..+.+ + .++..+...++. |+.+..
T Consensus 286 g-----~~G~~~~~~~~~~la~~l~~~L~~~g~~---~~~~p~~~~v~f~~~~~~-~---~~~w~l~~~~~~~hi~~~~~ 353 (380)
T PRK02769 286 G-----SKGLRQRVQHCLDMAQYAVDRLQANGIP---AWRNPNSITVVFPCPSER-I---WKKWHLATSGNQAHIITMPH 353 (380)
T ss_pred C-----HHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEcCCCceEEEEcCCCHH-H---HhCeeEcccCCEEEEEECCC
Confidence 1 1456777788888889999999887642 233454443444333332 2 233444444433 887644
Q ss_pred CCCCcHHHHHHHHHHHHH
Q 013839 404 VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~ 421 (435)
.+.+.++++++.|++.+.
T Consensus 354 ~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 354 HNKQQIDSLIDELIFDLK 371 (380)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 366778888888887765
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-14 Score=126.93 Aligned_cols=329 Identities=17% Similarity=0.152 Sum_probs=199.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCccc----HHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVS----TKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++-=...+.|....+.|.+..++.+.+.+...+ ..+-....|. -.|.+.+|+.. +++ ..+ ++.+
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~G-AGGTRNIsG~s~~hv~LE~eLA~LH-qK~------aAL---lFsS 239 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAG-AGGTRNISGHSKHHVRLEAELADLH-QKE------AAL---LFSS 239 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHHHcCCC-cCCccccCCCCchhhhHHHHHHHHh-cCc------cee---eeee
Confidence 4555556666656655566666666666665433 2223333443 46667777765 332 122 2333
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p 204 (435)
.--|+...+-.++..-||.++.-...-+-....-++..+..-.-+. .+ |+++|++.+.+. +..+++|-+.+.
T Consensus 240 CfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFr---HN----D~~hL~~lL~~~~~svPKivAFEtV 312 (570)
T KOG1360|consen 240 CFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFR---HN----DLDHLEQLLQSSPKSVPKIVAFETV 312 (570)
T ss_pred eeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeec---cC----CHHHHHHHHHhCCCCCCceEEEeee
Confidence 3333333322334445888777666433333333444443322221 22 889999998765 356799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcccEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+.-+|.+-+ +++|++++++||++.++||++.--.|++-. -.+..-.+ ...-+|+.+++.|+||+-| ||+.
T Consensus 313 hSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rG---aGvgerdGvm~kvDiIsGTLgKafGcVG---GYIA 383 (570)
T KOG1360|consen 313 HSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRG---AGVGERDGVMHKVDIISGTLGKAFGCVG---GYIA 383 (570)
T ss_pred eccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCC---CCccccCCcchhhhhcccchhhhccccc---ceeh
Confidence 999998866 559999999999999999997655554210 11111111 1234688999999999988 9994
Q ss_pred EEecChhHHHHHHHHHHHHhhcc---ccCCChhHHHHHHH--HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 284 ILCVDSKQAAAIRSQIQQIARAM---YGSPPVHGILLVAT--ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~q~~~~~--~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
. ..+ +++-++.+.-.. ++-+|....-++.+ .|+. ++-...|+..+++..++++.|.++|+
T Consensus 384 a---t~~----LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~--------~eg~~lR~~hqrnv~~~kq~l~~~Gi 448 (570)
T KOG1360|consen 384 A---TRK----LVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS--------EEGRVLRRQHQRNVKYVKQLLMELGI 448 (570)
T ss_pred h---hhh----HHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3 777 888888776432 23344333322221 2221 22356677788888999999999997
Q ss_pred CCCccccccCccee-EecCC---CHHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 359 SLNWEHITNQLGMF-CFSGL---TPYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 359 ~~~~~~~~~~~g~~-~~~~~---~~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
| +++...-+. +.+|- ..+....|+.++||++..- | ||..+. .+++.++.++++|..++++
T Consensus 449 P----Vi~~pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~ 524 (570)
T KOG1360|consen 449 P----VIPNPSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNE 524 (570)
T ss_pred c----ccCCCcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 443333211 12232 3455677888999999743 4 666432 2677788899999888876
Q ss_pred hh
Q 013839 423 EQ 424 (435)
Q Consensus 423 ~~ 424 (435)
..
T Consensus 525 v~ 526 (570)
T KOG1360|consen 525 VG 526 (570)
T ss_pred cC
Confidence 54
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-13 Score=119.77 Aligned_cols=269 Identities=12% Similarity=0.122 Sum_probs=179.3
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCCh-hhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPD-PTWS-NHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL 199 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v 199 (435)
+...|+.+.+.+ +..++.|||.|++.. ..|+ -+.++.+.+|+++..++. ..+....+|++.+++.+ .+++++
T Consensus 73 isgsGh~g~E~a--l~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~--~~G~~~~le~i~~~lsq--h~p~~v 146 (385)
T KOG2862|consen 73 ISGSGHSGWEAA--LVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEA--DIGQAVPLEEITEKLSQ--HKPKAV 146 (385)
T ss_pred EecCCcchHHHH--HHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEec--CcccCccHHHHHHHHHh--cCCceE
Confidence 677788899888 888899999998776 4453 335688899999999976 55678899999999986 456888
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc-CCc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY-GHR 278 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~R 278 (435)
++++....||+..+ -++.+-++|++|++++++|.+. .++-.+... |...-++......|+++.| |+
T Consensus 147 fv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~Va-Slggt~F~m---------DewgVDvaytgSQKaL~aP~GL- 213 (385)
T KOG2862|consen 147 FVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVA-SLGGTEFEM---------DEWGVDVAYTGSQKALGAPAGL- 213 (385)
T ss_pred EEEecCccccccch--HHHHHHHHhhcCCeEEEEechh-hcCCcccee---------hhhcccEEEecchhhcCCCCCc-
Confidence 88888888888654 3557778899999999999994 343332221 2222344455556888754 43
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhh-----------------------ccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIAR-----------------------AMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+-+ |.++. ...++++.+. .....+|....+.+.++|.. ..++.+
T Consensus 214 -sii---sfS~k----a~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~-----I~eeGL 280 (385)
T KOG2862|consen 214 -SII---SFSDK----ALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL-----IAEEGL 280 (385)
T ss_pred -cee---ecCHH----HHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH-----HHHHHH
Confidence 334 44777 3333433221 11234555555666555543 245778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcccc----ccCcceeEecCCCHHHH-HHHhhhccEEEeCC-----C---cEEec
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHI----TNQLGMFCFSGLTPYQV-DRLAKEFHIYMTQD-----G---RISMA 402 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-~~ll~~~gI~i~pg-----g---Ris~~ 402 (435)
++.++++++..++++..|+.+|+....... +...+.-+-.+.|...+ ..+..++++.+..| | ||...
T Consensus 281 ~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~ 360 (385)
T KOG2862|consen 281 ENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLL 360 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEe
Confidence 999999999999999999999874322111 11112112226676555 66666667777655 2 99864
Q ss_pred c--CCCCcHHHHHHHHHHHHHh
Q 013839 403 G--VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 403 ~--~~~e~i~~~~~~l~~~l~~ 422 (435)
+ .+-+.++..++.|+..+.+
T Consensus 361 gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 361 GCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred eccCCcHHHHHHHHHHHHHHhh
Confidence 3 3567788888888777654
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-13 Score=129.14 Aligned_cols=340 Identities=14% Similarity=0.112 Sum_probs=205.7
Q ss_pred CCCCCeeeeecce--ecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 47 DPSPYKINLGVGA--YRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 47 ~~~~~~i~l~~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.++...|||..|. . +. | -..+.+++++.+++. ......|......-++-|.+.+..-+.. .+.+. +
T Consensus 53 vdG~~ylDf~sgi~v~-~~-G-H~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~-----~~~~~--f 122 (447)
T COG0160 53 VDGNEYLDFLSGIAVL-NL-G-HNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSG-----LKKVF--F 122 (447)
T ss_pred CCCCEEEEcccCcchh-cc-C-CCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCccc-----CCeEE--e
Confidence 4678899998853 2 11 1 122334444444443 1112333333334456666666553322 34566 8
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-Hhh--------C--C---CCeeeeeecCCC--CCCc------
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WRD--------A--Q---IPERTYHYYDPD--SKSL------ 180 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~--------~--g---~~~~~v~~~~~~--~~~~------ 180 (435)
+++|++|++++.++.........|+...-+|.+.... +.. . + ..+..+|..+.- .++.
T Consensus 123 ~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~ 202 (447)
T COG0160 123 GNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECG 202 (447)
T ss_pred cCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhh
Confidence 9999999999987777666668899999888665332 211 1 1 123444432111 1121
Q ss_pred --ChHhHHHHhhc---CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH
Q 013839 181 --DFAALMDDIKN---APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI 254 (435)
Q Consensus 181 --d~e~l~~~i~~---~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 254 (435)
..+.++..+.. .+.+..++++...+...|.+. +++.++++.++|++||+++|.||+..+++-.+ ..+.+..
T Consensus 203 ~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG---~~fa~E~ 279 (447)
T COG0160 203 DDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG---KMFAFEH 279 (447)
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---cchhhhh
Confidence 22334443332 245678999988899999877 55568999999999999999999999988775 3455544
Q ss_pred hhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHH
Q 013839 255 FLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDE 334 (435)
Q Consensus 255 ~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~ 334 (435)
+ +....+ -++||.+| .|+.+|.+++ .++ +.+ +..-....+++-++++..++.+.|+.-. +
T Consensus 280 ~-gv~PDi---vt~aK~ig-~G~Pl~avv~---r~e----i~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie------~- 339 (447)
T COG0160 280 F-GVEPDI---VTLAKSLG-GGLPLSAVVG---RAE----IMD-WPPGGHGGTFGGNPVACAAALAVLDVIE------E- 339 (447)
T ss_pred c-CCCCCE---EEeccccc-CCCceeEEec---cHH----hcc-cCCcccCCCCCcCHHHHHHHHHHHHHHH------H-
Confidence 4 221222 34899999 5999999974 777 666 3333334456777777777777765211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEecCC---------CH---HHH-HHHhhhccEEEeCCC--
Q 013839 335 VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFSGL---------TP---YQV-DRLAKEFHIYMTQDG-- 397 (435)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~~~---------~~---~~~-~~ll~~~gI~i~pgg-- 397 (435)
+.+.++.++.-+++.+.|.++.-. ...+.. .-|+++-+.+ +. +.+ .++ .++|+.+..+|
T Consensus 340 -e~L~~~a~~~G~~l~~~L~~l~~~--~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~-~~~Glil~~~G~~ 415 (447)
T COG0160 340 -ENLLERAAELGEYLRDRLEELQEK--HPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARA-FERGLLLLTCGPH 415 (447)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhh--cCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHH-HHcCCEEeccCCC
Confidence 245566666667777777655311 112222 2234443322 21 233 444 56899888776
Q ss_pred ----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 398 ----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 ----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
||... ..++++++++++.|.+++++.
T Consensus 416 ~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 416 GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 88742 248999999999999988753
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=125.17 Aligned_cols=325 Identities=16% Similarity=0.119 Sum_probs=187.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCccc----HHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVS----TKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
..+.+++|..++|.....+|.+...-..+.++...+.. +-.-..|. ..|...||++. ++ ++-+ +.
T Consensus 65 ~~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGls-svrfIcGtq~iHk~LE~kiAqfh-~r------ED~i---ly 133 (417)
T KOG1359|consen 65 SDKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLS-SVRFICGTQDIHKLLESKIAQFH-GR------EDTI---LY 133 (417)
T ss_pred cccceeeecccccccccCChHHHHHHHHHHHHhCCCcc-ceeEEecchHHHHHHHHHHHHHh-CC------CceE---Ee
Confidence 44789999999985554444444443444444332211 11112333 45555666665 33 3333 46
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEEeC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLLHP 202 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~ 202 (435)
+++-.|+..+ +.+++.|.|.|.-...-+....+-++... .+ ...|+-+++..+.++ .-+-++|+..
T Consensus 134 pscfdANag~--feail~pedAvfSDeLNhASIIdGirLck----ry-------~h~dv~~l~~~l~~a~k~r~klv~TD 200 (417)
T KOG1359|consen 134 PSCFDANAGA--FEAILTPEDAVFSDELNHASIIDGIRLCK----RY-------RHVDVFDLEHCLISACKMRLKLVVTD 200 (417)
T ss_pred ccccccchHH--HHHhcChhhhhhccccccchhhhhhHHHh----hh-------ccchhHHHHHHHHHhhhheEEEEEec
Confidence 7777776555 77788898888777654444443333332 11 124566666555433 2344566653
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc-ccCCcccE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGC 281 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~ 281 (435)
..- .+..+...+++|++++++||+++++||++..+.++.- ....-..+.-.++-+++.++++|++| ..| ||
T Consensus 201 g~F---SMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~t--GrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gy 272 (417)
T KOG1359|consen 201 GVF---SMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGET--GRGTAEEFGVMGDVDIINSTLGKALGGASG---GY 272 (417)
T ss_pred cee---ccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCC--CCChHHHhCCCCcceehhhhhhhhhcCCCC---CC
Confidence 333 3344455677999999999999999999877766531 11122222234677899999999987 455 99
Q ss_pred EEEEecChhHHHHHHHHHHHHhhc-cccCCChhHH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIARA-MYGSPPVHGI-LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~q-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+.+ |.. +++.+++..++ .+++.-+++. -.++.++.-- -.-.....+.+.+.+.+++.++..|+
T Consensus 273 ttg---p~~----li~llrqr~RpylFSnslppavV~~a~ka~dll-------m~s~~~i~~~~a~~qrfr~~me~aGf- 337 (417)
T KOG1359|consen 273 TTG---PKP----LISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLL-------MVSSKEIQSRQANTQRFREFMEAAGF- 337 (417)
T ss_pred ccC---Chh----HHHHHHhcCCceeecCCCChhhhhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 964 888 88888887663 3333222221 1122222110 11234445666677788888877773
Q ss_pred CCccccccCcce-eEecCC---CHHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 360 LNWEHITNQLGM-FCFSGL---TPYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 360 ~~~~~~~~~~g~-~~~~~~---~~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+....-.+ -+.+|- .......||+ .||++... | |+.++. .++|+++++++++.++.+..
T Consensus 338 ---tIsg~~hPI~pv~lGda~lA~~~ad~lLk-~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 338 ---TISGASHPICPVMLGDARLASKMADELLK-RGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred ---eecCCCCCccceecccHHHHHHHHHHHHh-cCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 333221111 122232 3345577765 79998632 3 555543 38999999999999987654
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-13 Score=125.82 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=137.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
.+++|..|+..+ ++.++.+|++++..+..|.+...+++ ..|++...++. -|++++++.+. ++++
T Consensus 97 ~fsSGmaA~~~a--l~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~-------~~~~~~~~~i~---~~t~ 164 (409)
T KOG0053|consen 97 LFSSGMAAITVA--LLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV-------DDLKKILKAIK---ENTK 164 (409)
T ss_pred EecccHHHHHHH--HHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech-------hhHHHHHHhhc---cCce
Confidence 789999898888 78888999999999999988876655 56666666644 16778888887 6799
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~ 277 (435)
+|++.+|.||+..+. |+++|.++|+++|++|++|+.+.....- ++.+ ..-+|++.|.+|.++-.+-
T Consensus 165 ~V~~ESPsNPll~v~---DI~~l~~la~~~g~~vvVDnTf~~p~~~----~pL~-------lGADIV~hSaTKyi~Ghsd 230 (409)
T KOG0053|consen 165 AVFLESPSNPLLKVP---DIEKLARLAHKYGFLVVVDNTFGSPYNQ----DPLP-------LGADIVVHSATKYIGGHSD 230 (409)
T ss_pred EEEEECCCCCccccc---cHHHHHHHHhhCCCEEEEeCCcCccccc----Chhh-------cCCCEEEEeeeeeecCCcc
Confidence 999999999998775 5669999999999999999997554321 1111 1358999999999974544
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
=+|-+++ .+..+ +.+.++..+.....+++++....+.+-+.. +.-..++..++...+.+.|+..
T Consensus 231 vi~G~iv-~n~~~----~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt----------l~lRi~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 231 VIGGSVV-LNSEE----LASRLKFLQEDLGWCEDPFDLFLLSRGLKT----------LHLRINKHSENALKIALLLEAH 294 (409)
T ss_pred eeeeEEe-cCcHH----HHHHHHHHHHHhcCCCCHHHHHHHhcCcch----------hhhhHHHHHHHHHHHHHHhhhC
Confidence 4554442 43477 888888887777677777655444444433 2223344444444455555544
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-14 Score=135.87 Aligned_cols=280 Identities=14% Similarity=0.086 Sum_probs=167.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCC-chhHHHHHHHHHHHhC---CCCEEEEcCCCChhhHHHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALS-GTGACRLFAEFQRRFH---PESHIYFPDPTWSNHHNIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g-g~~a~~~~~~~~~~~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 169 (435)
+.+.|+.+++++.... +++++ ++.| +|+|++.+ +..++. +||.|++ .|........++..|++++.
T Consensus 46 ~~~~r~~l~~l~~~~~-----~~~vv--f~~gs~T~a~~~~--~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~ 115 (355)
T cd00611 46 VNEAESDLRELLNIPD-----NYKVL--FLQGGATGQFAAV--PLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVI 115 (355)
T ss_pred HHHHHHHHHHHhCCCC-----CceEE--EEcCCchHHHHHH--HHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEE
Confidence 5678888998884322 45677 7877 99999999 666666 4455544 22222223366788999888
Q ss_pred eeecCCCCCCc-ChHh-HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 170 YHYYDPDSKSL-DFAA-LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 170 v~~~~~~~~~~-d~e~-l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
++. +++ +.. +..+ .+..+. +++++|.+++..|.||+.++ ++++.||+++++|.+ +.++..+.+
T Consensus 116 ~~~-~~~-g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~-qs~g~~~id- 180 (355)
T cd00611 116 VAA-KEE-GKYTKIPDVETWDLA---PDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMS-SNILSRPID- 180 (355)
T ss_pred Eec-ccc-cCCCCCCCHhhcCCC---CCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEcc-ccccCCCCC-
Confidence 876 222 122 4222 223343 67899999999999999743 344569999999999 444432221
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH------HHH-Hhh-ccccCCChhHHHHHH
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ------IQQ-IAR-AMYGSPPVHGILLVA 319 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~------l~~-~~~-~~~~~~~~~~q~~~~ 319 (435)
+... + +.+.|..|.+|.+| +|.+++ +++..+++... ... ... ....+++....+++.
T Consensus 181 ----v~~~----~--~~~ss~~K~lGP~G--~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~ 245 (355)
T cd00611 181 ----VSKF----G--VIYAGAQKNLGPAG--VTVVIV---RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMG 245 (355)
T ss_pred ----HHHh----C--EEEeecccccCCCc--eEEEEE---CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHH
Confidence 1111 2 35566799999777 577754 77733322110 000 011 123456666666666
Q ss_pred HHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcce-eEec--CC--CHHHHHHHhhhccEE
Q 013839 320 TILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGM-FCFS--GL--TPYQVDRLAKEFHIY 392 (435)
Q Consensus 320 ~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~-~~~~--~~--~~~~~~~ll~~~gI~ 392 (435)
++|+.-. .. .++.+.++.+++.+++++.|+++ |+...........+. ..+. +. +.+... .+.+.|+.
T Consensus 246 aal~~l~-----~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~-~~~r~G~~ 319 (355)
T cd00611 246 LVLKWLK-----EQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLK-EAEAAGMI 319 (355)
T ss_pred HHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHH-HHHHCCCc
Confidence 6665321 13 37788899999999999999988 531010000012222 3222 32 222223 34568998
Q ss_pred EeCC----C--cEEeccC-CCCcHHHHHHHHHHH
Q 013839 393 MTQD----G--RISMAGV-TTGNVNYLANAIHEV 419 (435)
Q Consensus 393 i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~ 419 (435)
+.++ | |+|++.. +.+|+++++++|+++
T Consensus 320 ~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 320 GLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred ccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 6555 3 9997543 789999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=132.66 Aligned_cols=341 Identities=12% Similarity=0.039 Sum_probs=189.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++...+|+..|.-...-| -..+.+++++.+++... ....|.......++.+.+++...+. .+.+. ++++
T Consensus 72 ~dG~~ylD~~~g~~~~~lG-h~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~--f~~S 142 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNVG-HRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGK------LKYSF--FCNS 142 (442)
T ss_pred CCCCEEEECCccHHhhhcC-CCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCC------cCEEE--EeCC
Confidence 4567888987772101111 12233444444444421 1122322222334444444443111 13566 8999
Q ss_pred chhHHHHHHHHHHHhC--CC-CEEEEcCCCChhhHHHHhhCCCCe----eeeeecCCCC--CCcChHhHHHHhhc---CC
Q 013839 126 GTGACRLFAEFQRRFH--PE-SHIYFPDPTWSNHHNIWRDAQIPE----RTYHYYDPDS--KSLDFAALMDDIKN---AP 193 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~----~~v~~~~~~~--~~~d~e~l~~~i~~---~~ 193 (435)
|++|++++..+..... .| .+|+....+|.+..........+. ...|+.+.-. -..|.+.+++.++. .+
T Consensus 143 GsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~ 222 (442)
T TIGR03372 143 GTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTG 222 (442)
T ss_pred chHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCC
Confidence 9999999986665543 23 678989988877654322221110 0111100000 01256777776642 33
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
.+..++++.....-.|... +++.++++.++|++||+++|.||+..+|+..+ ..+....+ +.... |+ +++|.+
T Consensus 223 ~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~PD-iv--t~gK~l 295 (442)
T TIGR03372 223 DDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG---KMFACEHE-GVQPD-IL--CLAKAL 295 (442)
T ss_pred CcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc---cchhhhhc-CCCCC-ee--eehhhh
Confidence 4577888877666677766 67789999999999999999999987775443 12233222 22122 22 489999
Q ss_pred cccC-CcccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYG-HRVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
| .| ..+|.+++ .++ +.+.+... ....+++.++++..++.+.|+.-. + +...++.++.-+++
T Consensus 296 g-~G~~Pigavv~---~~~----i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~------~--~~l~~~~~~~G~~l 359 (442)
T TIGR03372 296 G-GGVMPIGATIA---TEA----VFSVLFDNPFLHTTTFGGNPLACAAALATINELL------E--KNLPAQAAIKGDFL 359 (442)
T ss_pred c-CCcccceEEEe---cHH----HHHhhhccCccccCCCCCCHHHHHHHHHHHHHHH------h--ccHHHHHHHHHHHH
Confidence 8 67 57888863 677 66655321 123345556676666666664211 1 12344555666666
Q ss_pred HHHHHhhCC--CCCccccccCcceeEecCC--C--HHHHHHHhhhccEEEeCC---C---cEEec-cCCCCcHHHHHHHH
Q 013839 350 RQNLEKLGS--SLNWEHITNQLGMFCFSGL--T--PYQVDRLAKEFHIYMTQD---G---RISMA-GVTTGNVNYLANAI 416 (435)
Q Consensus 350 ~~~l~~~~~--~~~~~~~~~~~g~~~~~~~--~--~~~~~~ll~~~gI~i~pg---g---Ris~~-~~~~e~i~~~~~~l 416 (435)
.+.|+++.. +..+...... |.+.-+.+ + ...+...+.++||.+.+. + ||... ..+++++++++++|
T Consensus 360 ~~~L~~l~~~~~~~i~~vRG~-Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l 438 (442)
T TIGR03372 360 LDGFQQLAAEYPDLIIEARGK-GLLMAIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAA 438 (442)
T ss_pred HHHHHHHHHhCCCceEEEecc-eEEEEEEeCChHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHH
Confidence 666665421 1011122233 44444433 1 233433345689999753 2 77653 24899999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
.+.+
T Consensus 439 ~~~~ 442 (442)
T TIGR03372 439 KDAL 442 (442)
T ss_pred HHhC
Confidence 8753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=135.75 Aligned_cols=267 Identities=18% Similarity=0.193 Sum_probs=158.6
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCC---CChhhHHHHhh---CCCCee----eeeecCCCCCCcChHhHHHHhhcC
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDP---TWSNHHNIWRD---AQIPER----TYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p---~y~~~~~~~~~---~g~~~~----~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
..+|+.|+..+ +.++++|||+|+..+. ++..+...... .+.... ++.. +.+++.+|+++|++.+.+.
T Consensus 106 ~~SG~~AN~av--~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~-~~~~g~iD~d~Le~~l~~~ 182 (475)
T PLN03226 106 PLSGSPANFAV--YTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRL-DESTGLIDYDKLEKKAMLF 182 (475)
T ss_pred cCchHHHHHHH--HHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeee-cCCCCCcCHHHHHHHHhhc
Confidence 57888898877 8889999999998553 34443332211 111111 3343 3456789999999998743
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
+++++++.. ++ +|...+ +++|.++|+++|+++++|+++..-.... +....+ ....+++++|++|++
T Consensus 183 --~pklIv~~~-S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~-~~~~~p------~~~~Div~~t~hK~L 248 (475)
T PLN03226 183 --RPKLIIAGA-SA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAA-QEAASP------FEYCDVVTTTTHKSL 248 (475)
T ss_pred --CCeEEEEec-Cc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccC-CCCCCC------CCCCeEEEecCcccc
Confidence 456665532 22 555554 5588899999999999999853322211 100001 113568899999998
Q ss_pred -cccCCcccEEEEEecChhHHH----------HHHHHHHHHhhccc-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 273 -GLYGHRVGCLSILCVDSKQAA----------AIRSQIQQIARAMY-GSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 273 -g~~G~RvG~~~~~~~~~~~~~----------~~~~~l~~~~~~~~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
|..| |++. + +++..+ ++...+.......+ .+++.....++..++..-. ....+++++
T Consensus 249 ~GP~G---g~I~--~-~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~-----~~~~~~~~~ 317 (475)
T PLN03226 249 RGPRG---GMIF--F-RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM-----TPEFKAYQK 317 (475)
T ss_pred cCCCc---eEEE--E-chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh-----CcCHHHHHH
Confidence 4444 7774 4 544110 12222221111112 2333333334444443210 122456788
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEec-----CCCHHHHHHHhhhccEEEeCC------------C-cEE
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFS-----GLTPYQVDRLAKEFHIYMTQD------------G-RIS 400 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~-----~~~~~~~~~ll~~~gI~i~pg------------g-Ris 400 (435)
+..++.++|.+.|.+.|+ .+..+ ... ..++ +++...+.+.|++.||.+..+ | |++
T Consensus 318 ~~~~na~~L~~~L~~~G~----~l~~~~t~~h-i~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiG 392 (475)
T PLN03226 318 QVKANAAALANRLMSKGY----KLVTGGTDNH-LVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIG 392 (475)
T ss_pred HHHHHHHHHHHHHHhCCC----EEEcCCCCCC-EEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccC
Confidence 899999999999988774 34332 122 2222 456677878888899988532 3 653
Q ss_pred -----eccCCCCcHHHHHHHHHHHHHh
Q 013839 401 -----MAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 401 -----~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
-.+.++++++++.+.|.++++.
T Consensus 393 t~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 393 TPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 2345789999999999998873
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-13 Score=132.98 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=193.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE-FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
++...+|+..|.-...-| -..+++++++.+++.... ...|.......+|.+.+++...+. .+.+. ++++|
T Consensus 80 dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~--f~~SG 150 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVG-HRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGK------LKYSF--FCNSG 150 (459)
T ss_pred CCCEEEECCcCHHhhhcC-CCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCC------CCEEE--EeCCc
Confidence 567788887773101111 122334444444444221 111222222234444444443111 23566 89999
Q ss_pred hhHHHHHHHHHHHhCC--C-CEEEEcCCCChhhHHHHhh-CCCCeee---eeecCCCC--CCcChHhHHHHhhc---CCC
Q 013839 127 TGACRLFAEFQRRFHP--E-SHIYFPDPTWSNHHNIWRD-AQIPERT---YHYYDPDS--KSLDFAALMDDIKN---APD 194 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~--g-d~Vlv~~p~y~~~~~~~~~-~g~~~~~---v~~~~~~~--~~~d~e~l~~~i~~---~~~ 194 (435)
++|++.+..+...... | .+|+....+|.+....... .+-.... .|..+.-. --.|.+.+++.+.+ .+.
T Consensus 151 sEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 230 (459)
T PRK11522 151 TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGD 230 (459)
T ss_pred hHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCC
Confidence 9999999766655542 3 4688888888776543222 1211000 11100000 01267778877753 234
Q ss_pred CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
+..++++.....-.|... +++.++++.++|++||+++|.||+..+|+..+ ..+....+ +... +| -+++|.+|
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~P-Di--vt~gK~lg 303 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG---KMFACEHE-NVQP-DI--LCLAKALG 303 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc---hhhhhhcc-CCCC-CE--EEechhhh
Confidence 567788777666677765 67789999999999999999999987765443 12232222 2222 22 27899998
Q ss_pred ccC-CcccEEEEEecChhHHHHHHHHHHH--HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYG-HRVGCLSILCVDSKQAAAIRSQIQQ--IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 274 ~~G-~RvG~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.| ..+|.+++ .++ +.+.+.. .....+++.++++..++.+.|+.-. + +...++.+++-++|.
T Consensus 304 -gG~~Pigav~~---~~~----i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~------~--~~l~~~~~~~g~~l~ 367 (459)
T PRK11522 304 -GGVMPIGATIA---TEE----VFSVLFDNPFLHTTTFGGNPLACAAALATINVLL------E--QNLPAQAEQKGDYLL 367 (459)
T ss_pred -CCCccceeEEE---cHH----HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHh------c--chHHHHHHHHHHHHH
Confidence 67 57888864 667 6555432 1123344556666666666664211 1 234566777777777
Q ss_pred HHHHhhC--CCCCccccccCcceeEecCC-C---HHHHHHHhhhccEEEeCC---C---cEEec-cCCCCcHHHHHHHHH
Q 013839 351 QNLEKLG--SSLNWEHITNQLGMFCFSGL-T---PYQVDRLAKEFHIYMTQD---G---RISMA-GVTTGNVNYLANAIH 417 (435)
Q Consensus 351 ~~l~~~~--~~~~~~~~~~~~g~~~~~~~-~---~~~~~~ll~~~gI~i~pg---g---Ris~~-~~~~e~i~~~~~~l~ 417 (435)
+.|+++. .+..+...... |.+.-+.+ + ...+...+.++||.+.+. + ||... ..+++++++++++|.
T Consensus 368 ~~L~~l~~~~~~~i~~VrG~-Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~ 446 (459)
T PRK11522 368 DGFRQLAREYPDLVQEARGK-GMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAAR 446 (459)
T ss_pred HHHHHHHHhCCCceeeEEec-eeEEEEEecCchHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHH
Confidence 7777653 11011122223 33443333 1 223433345689999765 2 66653 348999999999999
Q ss_pred HHHHhhh
Q 013839 418 EVTRSEQ 424 (435)
Q Consensus 418 ~~l~~~~ 424 (435)
++++++.
T Consensus 447 ~~l~~~~ 453 (459)
T PRK11522 447 KALAAMR 453 (459)
T ss_pred HHHHHHH
Confidence 9987655
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-14 Score=133.69 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=178.3
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYH 171 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~ 171 (435)
+.+.++.+++++.... +.++. .++.+|+++++.+ +..++.+||++++..-+..+. ...++.+|.. ..+.
T Consensus 50 ~~~~~~~l~~l~~~~~-----~~~v~-~~~gsgt~~~Ea~--~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~ 120 (360)
T PRK05355 50 AEEAEADLRELLNIPD-----NYKVL-FLQGGASLQFAMV--PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAA 120 (360)
T ss_pred HHHHHHHHHHHhCCCC-----CcEEE-EEcCCchHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEe
Confidence 4566667777663211 12343 2567789999988 888899999998877665444 4567788854 5554
Q ss_pred ecCCCCCCcChHhHHH-HhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 172 YYDPDSKSLDFAALMD-DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~-~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
. +......+..++++ .++ +++++|.+++..|.||+..+ ++++| +|+++|+|.+ +.++..+.
T Consensus 121 ~-~~~~g~~~~~~~~~~~l~---~~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDav-ss~g~~~i----- 182 (360)
T PRK05355 121 S-SEDDGFTYIPPLDEWQLS---DDAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMS-SDILSRPI----- 182 (360)
T ss_pred c-ccccCCCCCCChhhccCC---CCCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcC-ccccCccC-----
Confidence 4 22123345555555 565 46789999999999999974 34454 8999999999 44443322
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH------HHH-Hh-hccccCCChhHHHHHHHHh
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ------IQQ-IA-RAMYGSPPVHGILLVATIL 322 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~------l~~-~~-~~~~~~~~~~~q~~~~~~l 322 (435)
++..+ + +++.|..|.+|.+| +|.+.+ +++.++++... +.. .. .....+++....+++.++|
T Consensus 183 dv~~~----d--~~~~ssqK~lgP~G--lg~l~~---s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL 251 (360)
T PRK05355 183 DVSKF----G--LIYAGAQKNIGPAG--LTIVIV---REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVF 251 (360)
T ss_pred CHHHc----c--EEEEeccccccCCc--eEEEEE---CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHH
Confidence 12111 2 88888899999777 466654 77744332110 000 01 1234567777777777777
Q ss_pred CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc-ceeEec--CC-CHHHHHHHhhhccEEEeCC-
Q 013839 323 SDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL-GMFCFS--GL-TPYQVDRLAKEFHIYMTQD- 396 (435)
Q Consensus 323 ~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~ll~~~gI~i~pg- 396 (435)
+.-. .. .++.+.++.++..+++++.|+++++........... ....+. +. ..+.+...+.++|+.+.++
T Consensus 252 ~~i~-----~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~ 326 (360)
T PRK05355 252 KWLK-----EQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGH 326 (360)
T ss_pred HHHH-----HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCC
Confidence 5321 23 478888999999999999999987411111000112 222222 21 2133323345689998665
Q ss_pred ---C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 397 ---G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 ---g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
| |+|+... +.+|++++++.|+++++.
T Consensus 327 ~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 327 RSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 9997543 789999999999998764
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-12 Score=127.65 Aligned_cols=337 Identities=11% Similarity=0.032 Sum_probs=192.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-| ...+.+++++.+++.......+ +.....++.+.+++...+ .+++. ++++|
T Consensus 50 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~l~~~~p~-------~~~v~--f~~sG 118 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITG-HAHPHITKAITEAAENGVLYGT-PTELEIEFAKMLKEAIPS-------LEKVR--FVNSG 118 (428)
T ss_pred CCCCEEEEccccccccccC-CCCHHHHHHHHHHHHhCCccCC-CCHHHHHHHHHHHHhCCC-------CcEEE--EeCCH
Confidence 4678899997774211112 1223344555555543322222 222223444444443311 24677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCee--------eeeecCCCC----CCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPER--------TYHYYDPDS----KSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~--------~v~~~~~~~----~~~d~e~l~~~i~~~~ 193 (435)
++|++.+..+........+|+...-+|.+...... ..|.... .++.....+ --.|++.+++.+.+.+
T Consensus 119 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 198 (428)
T PRK12389 119 TEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWG 198 (428)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcC
Confidence 99999997666555444788888888877654322 2221110 000000000 0126888988887554
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
.+..++++.....-.|... +++.+++|.++|++||+++|.||+..+|..+. ......+ +.... +-+++|.+
T Consensus 199 ~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~----~~a~~~~-gv~PD---ivt~gK~l 270 (428)
T PRK12389 199 DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY----GGAQDLL-GVEPD---LTALGKII 270 (428)
T ss_pred CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc----chhhHHh-CCCCC---eeeechhh
Confidence 5677888877777778765 67789999999999999999999988773321 1111111 22122 23689999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHH---hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQI---ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
| .|+.+|.+++ +++ +.+.+... ....+.+.++++..++.+.|+.-. + +...++.+++.+++
T Consensus 271 g-gG~Pi~av~~---~~~----i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~------~--~~l~~~~~~~g~~l 334 (428)
T PRK12389 271 G-GGLPIGAYGG---RKD----IMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQ------Q--EGVYEKLDRLGAML 334 (428)
T ss_pred c-CCCceeEEeE---HHH----HHhhhccCCCcccccCCccCHHHHHHHHHHHHHHh------c--ccHHHHHHHHHHHH
Confidence 8 7888888854 777 76666421 112345566676666666654211 1 12444555566666
Q ss_pred HHHHHhh----CCCCCccccccCcceeEe-c-C--C---------C---HHHHHHHhhhccEEEeCCC----cEEeccCC
Q 013839 350 RQNLEKL----GSSLNWEHITNQLGMFCF-S-G--L---------T---PYQVDRLAKEFHIYMTQDG----RISMAGVT 405 (435)
Q Consensus 350 ~~~l~~~----~~~~~~~~~~~~~g~~~~-~-~--~---------~---~~~~~~ll~~~gI~i~pgg----Ris~~~~~ 405 (435)
.+.|+++ +.. ..+. ...|++.. + . . + ...+...+.++||.+.+.+ .+++. .+
T Consensus 335 ~~~L~~l~~~~~~~--~~v~-r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~l~-~t 410 (428)
T PRK12389 335 EEGILEAAEKHGIT--ITIN-RLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWFLTTA-HT 410 (428)
T ss_pred HHHHHHHHHhCCCC--EEEE-ecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCeeecCC-CC
Confidence 6666543 321 1221 22333321 1 1 0 1 1234334456899998864 34432 48
Q ss_pred CCcHHHHHHHHHHHHHh
Q 013839 406 TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~ 422 (435)
+++++++++++.+++++
T Consensus 411 ~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 411 EEDIEETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998864
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-13 Score=127.60 Aligned_cols=281 Identities=15% Similarity=0.066 Sum_probs=175.0
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCC-chhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeee
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALS-GTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHY 172 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g-g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~ 172 (435)
+.++.+.+++.... ..+++ ++.| ||+|++.+ +..++.+||++++..-+..+. ..+++.+|+ +..+..
T Consensus 41 ~~~~~l~~l~~~~~-----~~~v~--~~~gsgT~a~ea~--~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~ 110 (349)
T TIGR01364 41 EAESDLRELLNIPD-----NYEVL--FLQGGATGQFAAV--PLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVAS 110 (349)
T ss_pred HHHHHHHHHhCCCC-----CceEE--EEcCCchHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEec
Confidence 44555555553211 23455 6655 99999999 888888999998887666444 456778888 666554
Q ss_pred cC--CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 173 YD--PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 173 ~~--~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
.+ ++...+|+++++ +. +++++|.+++..|.||+..+ ++++.+++++++|.+ +.++..+.+
T Consensus 111 ~~~~~~~~~~~~~~~~--~~---~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDav-ss~g~~~id---- 172 (349)
T TIGR01364 111 GKEGNYTKIPDPSTWE--IS---EDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMS-SNILSRPID---- 172 (349)
T ss_pred cccCCCCCCCCHHhcC--CC---CCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEcc-ccccCccCC----
Confidence 11 122245555444 22 46789999999999999764 556678999999999 444433221
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH------HHHHh--hccccCCChhHHHHHHHHh
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ------IQQIA--RAMYGSPPVHGILLVATIL 322 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~------l~~~~--~~~~~~~~~~~q~~~~~~l 322 (435)
+.. .+ +++.|..|.+|.+| +|.+.+ +++.++++... +.... .....+++....+++.++|
T Consensus 173 -~~~----~d--~~~~ssqK~lgP~G--lg~l~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al 240 (349)
T TIGR01364 173 -VSK----FG--LIYAGAQKNIGPAG--LTVVIV---RKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVF 240 (349)
T ss_pred -HHH----cc--EEEEecccccCCCc--eEEEEE---CHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 211 12 88889999999887 566654 77744332110 01101 1223466777777777776
Q ss_pred CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhC-CCCCccccccCc-ceeEec--CC--CHHHHHHHhhhccEEEeC
Q 013839 323 SDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQL-GMFCFS--GL--TPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 323 ~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~-g~~~~~--~~--~~~~~~~ll~~~gI~i~p 395 (435)
+.-. ++ .++.+.++.+++.+++++.|++++ +........... ....+. +. +.++.. .+.+.|+.+.+
T Consensus 241 ~~l~-----~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~-~~~~~Gi~~~~ 314 (349)
T TIGR01364 241 KWLK-----EQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLK-EAEERGLVSLK 314 (349)
T ss_pred HHHH-----HcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHH-HHHHCCCcccC
Confidence 5321 23 478889999999999999999985 311111000112 222222 22 223334 44678997766
Q ss_pred C----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 396 D----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 396 g----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
+ | |+|+... +.||++.++++|++++++
T Consensus 315 ~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 315 GHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 6 3 9997543 789999999999987653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-12 Score=127.20 Aligned_cols=343 Identities=11% Similarity=0.031 Sum_probs=192.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..+|+..|.-...-|.. .+++++++.+++.... ...+.......+|.+.+++... .. .+.+. +++
T Consensus 41 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p-~~-----~~~v~--f~~ 111 (429)
T PRK06173 41 KDGRRLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILP-PS-----LNKIF--FAD 111 (429)
T ss_pred CCCCEEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCC-CC-----cCEEE--EeC
Confidence 357889999777421111111 2334444444443211 1111112223345555555431 11 24677 899
Q ss_pred CchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHH-HhhCCC-------------CeeeeeecCCCCC-----C
Q 013839 125 SGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNI-WRDAQI-------------PERTYHYYDPDSK-----S 179 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~-~~~~g~-------------~~~~v~~~~~~~~-----~ 179 (435)
+|++|++.+..+..... +| .+|+....+|.+.... +...|. .+..+|.. ...+ .
T Consensus 112 sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~ 190 (429)
T PRK06173 112 SGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQP-SIKFGEEWND 190 (429)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCC-CcccchhHHH
Confidence 99999999976555431 33 5788888888774221 111110 11122210 0000 1
Q ss_pred cChHhHHHHhhcCCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 180 LDFAALMDDIKNAPDSSFFLLHPSA-HNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 180 ~d~e~l~~~i~~~~~~~~~v~~~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
-+++.+++.+.+.+++..++++... +.-.|.. .+++.++++.++|++||+++|.||++.+++..+ ..+....+ +
T Consensus 191 ~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~~-g 266 (429)
T PRK06173 191 EAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG---KLFALEHA-G 266 (429)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC---cchHHHhc-C
Confidence 1456677777654456788887663 6767776 588889999999999999999999987765443 12222222 2
Q ss_pred cCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-----hhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-----ARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
... +|+ +++|.++ .| +.++-+++ +++ +.+.+... ....+.+.++++..++.+.|+.-
T Consensus 267 v~P-Div--~~gK~l~-gG~~p~~a~~~---~~~----i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i------ 329 (429)
T PRK06173 267 VVP-DIM--CIGKALT-GGYLTLSATIT---TEA----IAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL------ 329 (429)
T ss_pred CCC-CEE--Eeehhhh-CCccccceEEe---cHH----HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH------
Confidence 222 233 3899997 66 35666653 677 66655421 11223345666666666665421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC---cEEec-
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG---RISMA- 402 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg---Ris~~- 402 (435)
++ ....++.+++.+.|.+.|+++ +.+ .+...... |...-+.+ ....+.+.+.++||.+.+.| ||...
T Consensus 330 ~~--~~~~~~~~~~g~~l~~~L~~~~~~~-~v~~vRg~-Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl 405 (429)
T PRK06173 330 LE--SPWQQNIQRIEAQLKQELAPAAEFD-SVAEVRVL-GAIGVVEMKEPVNMATLQPRFVEHGIWVRPFGKLVYIMPPF 405 (429)
T ss_pred Hh--CCHHHHHHHHHHHHHHHHHHhhcCC-Ceeeeecc-ceEEEEEeCCcccHHHHHHHHHHCCeEEEecCCEEEEeCCc
Confidence 01 134566677777777777754 221 11112222 33332222 23445444567899999887 77643
Q ss_pred cCCCCcHHHHHHHHHHHHHhhh
Q 013839 403 GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 403 ~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
..+++++++++++|.+++.+..
T Consensus 406 ~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 406 IISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 2489999999999999997644
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-13 Score=130.24 Aligned_cols=345 Identities=10% Similarity=-0.004 Sum_probs=190.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.....-|.. .+++++++.+++......... .-..+....+++.+...... .-+.+. ++++|
T Consensus 40 ~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~p~--~~~~v~--f~~SG 112 (428)
T PRK07986 40 ADGRRLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVMFG--GITHPPAIELCRKLVAMTPQ--PLECVF--LADSG 112 (428)
T ss_pred CCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcccc--ccCCHHHHHHHHHHHhhCCC--CcCEEE--EeCCc
Confidence 467889999887421111222 233444444554421111000 00112334445554222111 024667 89999
Q ss_pred hhHHHHHHHHHHHh-----CCCCEEEEcCCCChhhHHHHhh-CCC-------------CeeeeeecCCC---CC-CcChH
Q 013839 127 TGACRLFAEFQRRF-----HPESHIYFPDPTWSNHHNIWRD-AQI-------------PERTYHYYDPD---SK-SLDFA 183 (435)
Q Consensus 127 ~~a~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~---~~-~~d~e 183 (435)
++|++.+..+.... ....+|+....+|.+....... .+- .+..++..+.. .+ .-|++
T Consensus 113 sEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~ 192 (428)
T PRK07986 113 SVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIA 192 (428)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHH
Confidence 99999997655544 1236899999888765422111 111 11122210000 00 12567
Q ss_pred hHHHHhhcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNAPDSSFFLLHPS-AHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++.+.+.+.+..+|++.. .+.-.|+. .+++.+++|.++|++||+++|+||+..+++..+. .+....+ +...
T Consensus 193 ~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~---~fa~~~~-gv~P- 267 (428)
T PRK07986 193 PFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK---LFACEHA-GIAP- 267 (428)
T ss_pred HHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC---eeeeccc-CCCC-
Confidence 78888865545667777755 25555664 4678899999999999999999999877654331 1111111 2112
Q ss_pred EEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh-----hccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA-----RAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+|+ +++|.++ .| +.+|.+++ +++ +.+.+.... ...+.+.++++..++.+.|+.-. +
T Consensus 268 Di~--t~gK~l~-gG~~p~~av~~---~~~----i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~------~-- 329 (428)
T PRK07986 268 DIL--CLGKALT-GGTMTLSATLT---TRE----VAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLE------S-- 329 (428)
T ss_pred CEE--Eechhhh-CCcccCcchhc---hHH----HHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH------h--
Confidence 233 4899997 67 46776653 677 766665411 22344556666666666654211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC---cEEec-cCCCC
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG---RISMA-GVTTG 407 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg---Ris~~-~~~~e 407 (435)
....++.+++.+++.+.|+++.....+...... |.+.-+.+ ....+...+.++||.+.+.| |+... ..+++
T Consensus 330 ~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~-Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~it~~ 408 (428)
T PRK07986 330 GDWQQQVAAIEAQLREELAPLRDAPMVADVRVL-GAIGVVETTRPVNMAALQRFFVEQGVWIRPFGKLIYLMPPYIILPE 408 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEecc-ceEEEEEeCCcccHHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHH
Confidence 134556666667777777665210011122222 33332322 23345444467899999877 66532 34899
Q ss_pred cHHHHHHHHHHHHHh
Q 013839 408 NVNYLANAIHEVTRS 422 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~ 422 (435)
++++++++|.++++.
T Consensus 409 ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 409 QLQRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999854
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-12 Score=128.46 Aligned_cols=344 Identities=12% Similarity=0.034 Sum_probs=190.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..||+..|.-...-|. ..+++++++.+++..... ..|. .....+|-+.+++...+ + -+++. +++
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~~-~~~~~~lae~L~~~~p~-~-----~~~v~--f~~ 119 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIGH-QHPKVVAAIQEQAARLCTVAPAHA-NDARSEAARLIAERAPG-D-----LSKVF--FTN 119 (451)
T ss_pred CCCCEEEEcccCHHhhcCCC-CCHHHHHHHHHHHHhcCCcCCccC-CHHHHHHHHHHHHhCCC-C-----CCEEE--EcC
Confidence 46788999988742111121 123444444455442211 1121 11123344444443311 1 24677 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCC-----------CeeeeeecCCCC--CC--cC-------
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQI-----------PERTYHYYDPDS--KS--LD------- 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~-----------~~~~v~~~~~~~--~~--~d------- 181 (435)
+|++|.+.+..+........+|+...-+|.+...... ..+. .+..++..+... +. -|
T Consensus 120 SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 199 (451)
T PRK06062 120 GGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERA 199 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHH
Confidence 9999999997666555444788888888877743322 1111 111121100000 10 12
Q ss_pred hHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 182 FAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 182 ~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.+++.+... +++..+|++.....-.|... +++.+++|.++|++||+++|.||+..+|+..+ ..+....+ +..
T Consensus 200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~~~~-gv~ 275 (451)
T PRK06062 200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG---KWFAIEHF-GVV 275 (451)
T ss_pred HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc---HHHHHHhc-CCC
Confidence 56777777543 24567777766666667765 77889999999999999999999988875443 12222222 222
Q ss_pred CeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
.. +.+++|.+| .|. .+|.+++ .++ +.+.+... ....+.+.++++..++.+.|+.-. + +
T Consensus 276 PD---i~t~gK~lg-gG~~Pigav~~---~~~----i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~------~--~ 336 (451)
T PRK06062 276 PD---LITFAKGVN-SGYVPLGGVAI---SEA----IAATFADRPYPGGLTYSGHPLACAAAVATINAME------E--E 336 (451)
T ss_pred CC---eeeechhhh-cCCcCcEEEEE---cHH----HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHH------h--c
Confidence 22 336899998 674 7888864 667 76666432 122355566676666666664211 1 1
Q ss_pred HHHHHHHHHH-HHHHHHHHhhCCC-CCccccccCcceeEecCC----------C--------HHHHHHHhhhccEEEeCC
Q 013839 337 IMADRIQRKR-TTLRQNLEKLGSS-LNWEHITNQLGMFCFSGL----------T--------PYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 337 ~~~~~~~~~~-~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~----------~--------~~~~~~ll~~~gI~i~pg 396 (435)
...++.++.- +++.+.|+++-.. ..+......|-++. +.+ + ...+...+.++||.+.+.
T Consensus 337 ~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~g-ve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~ 415 (451)
T PRK06062 337 GIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWA-LELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN 415 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEE-EEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec
Confidence 2334444443 3555555543110 00112233333222 211 0 123433445689999865
Q ss_pred C---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 G---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 g---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ ||+.. ..++++|++++++|.++++.+.
T Consensus 416 ~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 416 GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 4 77653 3489999999999999997654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-12 Score=127.42 Aligned_cols=339 Identities=14% Similarity=0.096 Sum_probs=188.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCC---cc--cHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISA---SV--STKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~---~g--~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
..+||.+--.+++..+....++.+.+++.....+ ....|.-. .| +..+++.+++++... ..+ ++
T Consensus 79 r~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae--------~a~--vv 148 (464)
T PRK04311 79 RPVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAE--------DAL--VV 148 (464)
T ss_pred cceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCC--------eEE--EE
Confidence 5677755443334344444444444444333322 12222211 12 357788888877322 233 68
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChh------hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSN------HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
++|+.|+.++ + ..+.+||+|++++..+.. ....++..|++++.++.. + ..++++++++++ ++|+
T Consensus 149 ~sgtaAl~l~--l-~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~--~t~~~dle~aI~---~~Tk 218 (464)
T PRK04311 149 NNNAAAVLLA--L-NALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--N--RTHLRDYEQAIN---ENTA 218 (464)
T ss_pred CCHHHHHHHH--H-HHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--C--CCCHHHHHHhcC---ccCe
Confidence 8899998777 4 346899999998764331 223567789999888652 1 357899999997 6789
Q ss_pred EEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc----CCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 198 FLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA----SGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 198 ~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
++++.+++||+ |.. ...++++|+++|++||+++|+|.+...+. ++ . ...+.+....+ .+-+++++|.+|.
T Consensus 219 lV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~g-l-~~~p~~~~~l~-~GaDiv~fSg~K~ 294 (464)
T PRK04311 219 LLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYG-L-PDEPTVQELLA-AGVDLVTFSGDKL 294 (464)
T ss_pred EEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhcc-C-CCCCchhhHHh-cCCcEEEecCccc
Confidence 99999999994 432 23468899999999999999999632221 11 0 00112222111 2457899999999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC---Chh--hHHH-HHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS---DPN--LKSL-WIDEVKIMADRIQRK 345 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~---~~~--l~~~-~~~~~~~~~~~~~~~ 345 (435)
+|-| ..|++++ +++ +++++++...............++.+.|. ++. +... -.+.+....++.+++
T Consensus 295 LgGp--~~G~i~g---~~~----li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~ 365 (464)
T PRK04311 295 LGGP--QAGIIVG---KKE----LIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRAR 365 (464)
T ss_pred ccCC--ceEEEEE---cHH----HHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHH
Confidence 8634 4788864 777 66666542211112222222223333332 110 0000 001233344667777
Q ss_pred HHHHHHHHHhhCCCC-Ccccccc----Ccc---------eeEec---CCCHHHHHHHhhhcc--EEEeCC-CcE--Eecc
Q 013839 346 RTTLRQNLEKLGSSL-NWEHITN----QLG---------MFCFS---GLTPYQVDRLAKEFH--IYMTQD-GRI--SMAG 403 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~-~~~~~~~----~~g---------~~~~~---~~~~~~~~~ll~~~g--I~i~pg-gRi--s~~~ 403 (435)
.+.+.+.|+....+. ...+... .|| +-+-+ +++.+.+++.|++.. |..+-. +++ .+-.
T Consensus 366 A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~~~~~~ld~r~ 445 (464)
T PRK04311 366 AERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIEDGRLLLDLRT 445 (464)
T ss_pred HHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCEEEEEeCc
Confidence 788888887653210 0122211 111 11111 335566666666644 444322 333 3334
Q ss_pred CCCCcHHHHHHHHHHHHH
Q 013839 404 VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~ 421 (435)
+.++|++.++++|++++.
T Consensus 446 ~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 446 LEEEDEERLAAALLEALN 463 (464)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 577889999999988753
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=128.01 Aligned_cols=340 Identities=12% Similarity=0.049 Sum_probs=187.6
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...||+..|.-...-| ...+.+++++.+++.......+ +.....+|-+.+.+.+. .. .+.+. ++++|
T Consensus 50 ~dG~~yiD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~L~~~~~-~~-----~~~v~--f~~SG 119 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHG-HSHPKICDAIQQGAERGTSYGL-TSEQEILFAEELFSYLG-LE-----DHKIR--FVSSG 119 (433)
T ss_pred CCCCEEEEcccchhccccC-CCCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-CC-----cCEEE--EeCch
Confidence 4678899998775211112 1223344444444443222212 22223344555554431 11 23666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-H---hhCCCC---e-eee--eecCCCC---CCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-W---RDAQIP---E-RTY--HYYDPDS---KSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~---~~~g~~---~-~~v--~~~~~~~---~~~d~e~l~~~i~~~~ 193 (435)
++|.+.+..+........+|+....+|.+.... + ...+-. . ..+ +...... .--|++.+++.+.+.+
T Consensus 120 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 199 (433)
T PRK00615 120 TEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLG 199 (433)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcC
Confidence 999999976655443346888888888775421 1 111100 0 000 0000000 0126788988887554
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++..+|++.....-.|... +++.+++|.++|++||+++|.||++.++..+. ......+ +... +++ +++|.+
T Consensus 200 ~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~----~ga~~~~-gv~P-Di~--~~gK~l 271 (433)
T PRK00615 200 HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQ----GGAAAIY-HVKP-DIT--VYGKIL 271 (433)
T ss_pred CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccH----hHHHHhc-CCCC-CeE--EEcccc
Confidence 5667777776666667765 57789999999999999999999987773221 1222222 2222 232 489999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
| .|..+|.+++ +++ +++.+.... ...+.+.+++...++.+.|+.-. + ....++++++-+++
T Consensus 272 g-gG~p~~av~~---~~~----i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~------~--~~~~~~~~~~g~~l 335 (433)
T PRK00615 272 G-GGLPAAAVVA---HKS----IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR------E--QGFYTQLSTLEQNF 335 (433)
T ss_pred c-CCcceeeeee---cHH----HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh------c--ccHHHHHHHHHHHH
Confidence 8 6777888864 787 777664321 12234456666666655554211 1 12234444444444
Q ss_pred ----HHHHHhhCCCCCccccccCcceeEec--CC-----------CH---HHHHHHhhhccEEEeCCC--c--EEeccCC
Q 013839 350 ----RQNLEKLGSSLNWEHITNQLGMFCFS--GL-----------TP---YQVDRLAKEFHIYMTQDG--R--ISMAGVT 405 (435)
Q Consensus 350 ----~~~l~~~~~~~~~~~~~~~~g~~~~~--~~-----------~~---~~~~~ll~~~gI~i~pgg--R--is~~~~~ 405 (435)
.+.+.+.+.+ +.... .|.++.+. .- +. ..+...+.++||++.|.. . +|... +
T Consensus 336 ~~~l~~~~~~~g~~--v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ls~~h-t 411 (433)
T PRK00615 336 LSPIEEMIRSQGFP--VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEASFLSSAH-S 411 (433)
T ss_pred HHHHHHHHHHcCCC--eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccccceecCC-C
Confidence 4444444432 22222 33333211 10 11 134333456899998864 3 55544 8
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
+++|+++++++.++++...
T Consensus 412 ~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 412 MENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987643
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=133.72 Aligned_cols=299 Identities=17% Similarity=0.177 Sum_probs=170.0
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCC------CCcc---cHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESI------SASV---STKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~------~~~g---~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|-..+ -..++.++++......+ ...+|+ ...- +..|.+..++.+++... .+..+
T Consensus 20 ~~~l~LiaSE-------N~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~----~~w~a 88 (399)
T PF00464_consen 20 RSTLNLIASE-------NYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEP----KEWYA 88 (399)
T ss_dssp HHSEE-CTT------------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-ST----TTEEE
T ss_pred hcCccccCcc-------cccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCc----ccceE
Confidence 4677887776 23455666655554421 122222 2221 34555555666677651 12233
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HH-------hhCCCCeeeeeecCCCCCCcChHhHHHHh
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IW-------RDAQIPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~-------~~~g~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
-+...+|+.|+..+ +.++++|||+|+..++..++|.. .. .....+.+.|++ +++++.+|.+++++.+
T Consensus 89 nvqp~SGs~An~av--~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~-d~~~~~ID~d~l~~~a 165 (399)
T PF00464_consen 89 NVQPHSGSQANLAV--YMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPV-DPDTGLIDYDELEKLA 165 (399)
T ss_dssp E---SSHHHHHHHH--HHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB--TTTSSB-HHHHHHHH
T ss_pred EeecCCchHHHHHH--HHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeee-ecCCCeECHHHHHHHH
Confidence 44688999998888 89999999999999877766632 11 112346778888 5667899999999998
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
.+. ++++|++....+|- .-+++++.++|++.|++++.|.++ .++.-++.- +.++ ..-.++.+|.
T Consensus 166 ~~~--kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~--~~P~------~~ADvvt~sT 230 (399)
T PF00464_consen 166 KEH--KPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGLF--PNPF------PYADVVTGST 230 (399)
T ss_dssp HHH----SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS----GC------CTSSEEEEES
T ss_pred hhc--CCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehhee--cCcc------ccceEEEeec
Confidence 763 56788875544443 346789999999999999999995 334433321 1121 1246889999
Q ss_pred cccccccCCcccEEEEEec-------------ChhHHHHHHHHHHHHhhccccCCChhHH-HHHHHHhCChhhHHHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCV-------------DSKQAAAIRSQIQQIARAMYGSPPVHGI-LLVATILSDPNLKSLWIDE 334 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~q-~~~~~~l~~~~l~~~~~~~ 334 (435)
.|+| +|-|-|.+. ++ +++ +.+++.+...+...+.+.... .+.+.+|.+. ....
T Consensus 231 hKtl--~GPrggiI~--~~~~~~~~~~~~~~~~~~----l~~~I~~avfP~~qg~~h~~~iaalAval~ea-----~~~~ 297 (399)
T PF00464_consen 231 HKTL--RGPRGGIIL--TNKGSKNVDKKGKEIDEE----LAEKIDSAVFPGLQGGPHMHRIAALAVALKEA-----LSPE 297 (399)
T ss_dssp SGGG---SSS-EEEE--ES-SEEEE-TTS-EEEHH----HHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH-----TSHH
T ss_pred cccc--cccCceEEE--EcCCccccCCcccccHHH----HHHHhccccCCCcccCcchhHHHHHHHHHhcc-----cCHH
Confidence 9997 788888874 63 266 888888766554433333322 3333333321 1133
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcce-eEec-----CCCHHHHHHHhhhccEEEe
Q 013839 335 VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGM-FCFS-----GLTPYQVDRLAKEFHIYMT 394 (435)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~-~~~~-----~~~~~~~~~ll~~~gI~i~ 394 (435)
.+++.++..++.+.|.+.|.+.|+ ++.....-. .+|+ +++...+++.|++.||.+-
T Consensus 298 fk~Ya~qVv~NAk~La~~L~~~G~----~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 298 FKEYAKQVVKNAKALAEALQERGF----KVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCc----EEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 467788888899999999999885 444322222 3344 3466778888899999984
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-12 Score=127.43 Aligned_cols=343 Identities=11% Similarity=0.042 Sum_probs=188.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...||+..|.....-| ...+++++++.+++... ....|.......+|-+.+++... .. .+.+. +++
T Consensus 50 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p-~~-----~~~v~--f~~ 120 (457)
T PRK05639 50 VDGNVFIDFLAGAAAASTG-YSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISP-IE-----NPKVL--FGL 120 (457)
T ss_pred CCCCEEEECCcCHHhhccC-CCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCC-CC-----cCEEE--EeC
Confidence 3678899998874211122 12233444444454421 11122222222345555554431 11 24677 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCC--------C-----CeeeeeecCCCC--CC----cCh--
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQ--------I-----PERTYHYYDPDS--KS----LDF-- 182 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g--------~-----~~~~v~~~~~~~--~~----~d~-- 182 (435)
+|++|++.+..+........+|+....+|.+...... ..+ . .+..+|..+... +. -+.
T Consensus 121 SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 200 (457)
T PRK05639 121 SGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDE 200 (457)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHH
Confidence 9999999997666555455788888888877543222 111 1 122233211100 00 022
Q ss_pred ------HhHHHHhhc---CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 183 ------AALMDDIKN---APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 183 ------e~l~~~i~~---~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+.+++.+.. .+++..++++...+...|... +++.+++|.++|++||+++|.||+..+|+..+ ..+..
T Consensus 201 ~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~ 277 (457)
T PRK05639 201 LINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG---KWFAS 277 (457)
T ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc---hHHHH
Confidence 234444321 135678888877777778755 67889999999999999999999988775443 12222
Q ss_pred HHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHH
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWI 332 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~ 332 (435)
..+ +...+ |++ ++|.++ .|..+|.+++ +++ +.+.... ....+.+.++++..++.+.|+.-.
T Consensus 278 ~~~-gv~PD-iv~--~gK~l~-gG~pi~av~~---~~~----i~~~~~~-~~~~T~~g~p~~~aaa~a~l~~l~------ 338 (457)
T PRK05639 278 EWF-EVKPD-LII--FGKGVA-SGMGLSGVIG---RKE----LMDLTSG-SALLTPAANPVISAAAEATLEIIE------ 338 (457)
T ss_pred Hhc-CCCCC-EEE--echhhc-CCCcceeEEe---hHH----HHhhcCC-CcccCCCcCHHHHHHHHHHHHHHH------
Confidence 222 22222 333 799998 6888888864 777 6552211 112344556665555555553211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC-------C---HHHHHHHhhhccEEEeCCC---
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL-------T---PYQVDRLAKEFHIYMTQDG--- 397 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~-------~---~~~~~~ll~~~gI~i~pgg--- 397 (435)
-+...++.+++-++|.+.|+++. .+ .+......|. +.-+.+ + ...+...+.++|+.+.+.|
T Consensus 339 --~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~VrG~Gl-~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~ 414 (457)
T PRK05639 339 --EENLLKNALKVGEFIKKRLLEMKESFE-VIGDVRGKGL-MIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFG 414 (457)
T ss_pred --HccHHHHHHHHHHHHHHHHHHHHHhCC-CEEeecccee-EEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCC
Confidence 11233445555566666665531 11 0112233333 332211 1 1233333456899998743
Q ss_pred ---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 ---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 ---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
|+... ..+++++++++++|.++++...
T Consensus 415 ~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 415 NVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred CEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 66643 3489999999999999987653
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-12 Score=128.09 Aligned_cols=348 Identities=13% Similarity=0.078 Sum_probs=193.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-| --.+++++++.+++...... ..-..+..+....+++.+...... -..+.+. ++++|
T Consensus 86 ~dG~~ylD~~sg~~~~~lG-h~hp~v~~Av~~ql~~~~~~-~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~--f~~SG 160 (504)
T PLN02760 86 INGKKYLDALAGLWCTALG-GSEPRLVAAATEQLNKLPFY-HSFWNRTTKPSLDLAKELLEMFTA-RKMGKVF--FTNSG 160 (504)
T ss_pred CCCCEEEEcCcCHHhcccC-CCCHHHHHHHHHHHhhccce-ecccccCcHHHHHHHHHHHhhcCC-CCCCEEE--EeCCh
Confidence 3567889988864212122 22334455555555432111 000012234445555554222100 0023566 89999
Q ss_pred hhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHH-hhCCCC------------eeeeeecCCCCCC--------
Q 013839 127 TGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIW-RDAQIP------------ERTYHYYDPDSKS-------- 179 (435)
Q Consensus 127 ~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~-~~~g~~------------~~~v~~~~~~~~~-------- 179 (435)
++|++.+..+.... . +| .+|+..+-+|.+..... ...|.. +..++. +..+.
T Consensus 161 sEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~ 238 (504)
T PLN02760 161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDC--PHYWRFHLPGETE 238 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCC--CcccccCCCCCcH
Confidence 99999986554322 1 33 67888888887764322 212211 111111 00000
Q ss_pred -----cChHhHHHHhhc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 180 -----LDFAALMDDIKN-APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 180 -----~d~e~l~~~i~~-~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
...+++++.+.+ .+++..+|++.....-.|.+. +++.+++|.++|++||+++|.||+..+|+-.+. .+..
T Consensus 239 ~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~---~~a~ 315 (504)
T PLN02760 239 EEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT---MFGC 315 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch---hhHH
Confidence 112456666643 234577888876666667765 678899999999999999999999888865431 2232
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCC
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
..+ +.... +.+++|.+| .| ..+|.+++ +++ +.+.+... ....+.+.++++..++.+.|+.
T Consensus 316 e~~-gv~PD---ivtlgK~lg-gG~~PigAv~~---~~~----i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~ 383 (504)
T PLN02760 316 DKY-NIKPD---LVSLAKALS-SAYMPIGAVLV---SPE----ISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI 383 (504)
T ss_pred Hhc-CCCCc---EEEeccccc-CCccccceEee---cHH----HHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH
Confidence 222 22112 456899997 55 47888754 777 76666431 1233555677777776666642
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-C--------------HHHHHHHhhhc
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-T--------------PYQVDRLAKEF 389 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~--------------~~~~~~ll~~~ 389 (435)
-. + +...++.+++.++|++.|+++.-...+......|.++. +.+ + ...+...+.++
T Consensus 384 i~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~g-ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (504)
T PLN02760 384 YK------E--RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILG-TEFVDNKSPNDPFPAEWGVGAYFGAECKKR 454 (504)
T ss_pred HH------h--CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEE-EEEecCCcccccccchhHHHHHHHHHHHhC
Confidence 11 1 13455566666666666665411001112233333332 211 0 12233334568
Q ss_pred cEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 390 HIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 390 gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
||.+.+.| ||+.. ..++++|++++++|.++++...+
T Consensus 455 Gvl~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 455 GMLVRVAGDNIMMSPPLIITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred CcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 77743 24899999999999999977644
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-12 Score=126.48 Aligned_cols=341 Identities=10% Similarity=-0.010 Sum_probs=190.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|+..|.....-| ...+++++++.+++.... ...+.......++-+.+++... .. -+.+. ++++
T Consensus 43 dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~-----~~~v~--f~~s 113 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHG-YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTP-NA-----LDCVF--LADS 113 (427)
T ss_pred CCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCC-CC-----CCEEE--EeCC
Confidence 567899998875111112 122334444444443211 1111112223455555555431 11 14666 8999
Q ss_pred chhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHhh-CCCC-------------eeeeeecCCCCCC-----c
Q 013839 126 GTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWRD-AQIP-------------ERTYHYYDPDSKS-----L 180 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~-~g~~-------------~~~v~~~~~~~~~-----~ 180 (435)
|++|++.+..+..... +| .+|+....+|.+....+.. .+.. ...++.. ...+. -
T Consensus 114 GseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~ 192 (427)
T TIGR00508 114 GSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEE 192 (427)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHH
Confidence 9999999875443321 23 6789999888776432221 1210 1111110 00011 1
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSA-HNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED 258 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 258 (435)
|++++++.+.+.+.+..+|++... ++-.|.. .+.+.+++|.++|++||+++|+||++.+++..+. .+....+ +.
T Consensus 193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~---~~~~~~~-~v 268 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK---LFACEHA-GV 268 (427)
T ss_pred HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---cchhhhc-CC
Confidence 467777788654445667776653 5555654 4789999999999999999999999877655431 1122222 22
Q ss_pred CCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHh-----hccccCCChhHHHHHHHHhCChhhHHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIA-----RAMYGSPPVHGILLVATILSDPNLKSLWI 332 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~ 332 (435)
... |+ +++|.++ .|+ -++.+++ +++ +.+.+.... ...+.+.++++..++.+.|+.-.
T Consensus 269 ~pD-i~--~~gK~l~-gG~~p~~a~~~---~~~----~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~------ 331 (427)
T TIGR00508 269 VPD-IL--CVGKALT-GGYMTLSATVT---TDK----VAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILL------ 331 (427)
T ss_pred CCC-EE--Eechhhh-cCcccceEEEE---cHH----HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH------
Confidence 222 33 3799996 674 4565543 777 666665321 12233446666666666664210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC---cEEec-cC
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG---RISMA-GV 404 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg---Ris~~-~~ 404 (435)
+ ....++.+++.++|.+.|++++....+......|. +.-+.+ ....+...+.++||.+.+.+ |++.. ..
T Consensus 332 ~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~-~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl~~ 408 (427)
T TIGR00508 332 E--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGA-IGVVEMYKPVNVEELQKKFVEQGVWIRPFGKLIYVMPPYII 408 (427)
T ss_pred h--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEecccc-EEEEEECCccCHHHHHHHHHHCCeEEEecCCEEEEECCCCC
Confidence 1 13456777777788888877642101111112232 222221 23444444456899998876 77653 24
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 013839 405 TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~ 422 (435)
++++|++++++|.+++.+
T Consensus 409 t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 409 TTEQLQKLTAALIEALHE 426 (427)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 889999999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=127.73 Aligned_cols=281 Identities=14% Similarity=0.116 Sum_probs=175.2
Q ss_pred CCeeeEecCCchhHHHHHHHHHH-Hh-----CCC-----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHh
Q 013839 116 GRSAGVQALSGTGACRLFAEFQR-RF-----HPE-----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~-~~-----~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 184 (435)
+++.+.+|+|||+|+.++..... .. ..| .+|++.+-.+..+...++..|+++..+|. +++++.+|+++
T Consensus 100 ~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~-d~~~~~vd~~~ 178 (431)
T TIGR01788 100 AEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPM-DPGRYVIDPEQ 178 (431)
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEec-CCCceeeCHHH
Confidence 35665568999999988742111 11 112 36888888888888888888999999988 34445799999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc------CceeeeeccCCCcc----CCCCcccHHHHHH
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK------GHFPFFDMAYQGFA----SGDLDKDAQAIRI 254 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~vi~Deay~~~~----~~~~~~~~~~~~~ 254 (435)
|++++. +++.+|++...+|.||.+.+.+ +|.++|+++ ++++.+|.+|..+. .+. ....+
T Consensus 179 L~~~i~---~~t~lV~~t~g~t~tG~idpi~---~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~---~~~~~-- 247 (431)
T TIGR01788 179 VVEAVD---ENTIGVVCILGTTYTGEYEDVK---ALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD---LEWDF-- 247 (431)
T ss_pred HHHHHh---hCCeEEEEEeCCCCCcccCCHH---HHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC---chhhc--
Confidence 999998 6788999999999999987655 888899999 99999999987543 111 11111
Q ss_pred hhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHH---Hhhc----cccCCChhHHHHHHHHhCChh
Q 013839 255 FLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQ---IARA----MYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 255 ~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~---~~~~----~~~~~~~~~q~~~~~~l~~~~ 326 (435)
....-+.+..|.+|.+ +..| +|.+.+ .+++. +...+.. +... .....+..+-.++..++.
T Consensus 248 --~~~~~DSis~s~HK~~~~P~g--~G~l~~--r~~~~---l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~--- 315 (431)
T TIGR01788 248 --RLPRVKSINVSGHKYGLVYPG--VGWVIW--RDEEA---LPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN--- 315 (431)
T ss_pred --CCCCceEEEECchhccCCCCC--cEEEEE--eChHH---cchhheecccccCCCCCCcceecCchHHHHHHHHHH---
Confidence 1223355778899986 6555 677753 24331 1122111 0000 011112211111211211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEec--C-----CCHHHHHHHhhhccEEE----
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFS--G-----LTPYQVDRLAKEFHIYM---- 393 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~--~-----~~~~~~~~ll~~~gI~i---- 393 (435)
+...=.+..++..++..++.+++.+.|++.+. +....+ ..+...|- + .+...+.+.|.+.|+.+
T Consensus 316 l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~---~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~ 392 (431)
T TIGR01788 316 FLRLGREGYRKIMQNSLDVARYLAEEIAKLGP---FEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYT 392 (431)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCC---EEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCC
Confidence 00000145667778888888999999988763 454443 45544443 2 34445544556789864
Q ss_pred eCC---C----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 394 TQD---G----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 394 ~pg---g----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|. | |+++. ..+.+.++++++.|++++..+
T Consensus 393 ~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 393 LPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 332 3 88763 336778899999999887654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-12 Score=125.98 Aligned_cols=340 Identities=10% Similarity=0.040 Sum_probs=186.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...||+..+.+.. -|. ..+.+++++.+++..... ..|. .....+|-+.+++...+ . .+.+. ++++
T Consensus 70 dG~~ylD~~g~~~~~-lGh-~~p~v~~Ai~~ql~~~~~~~~~~~-~~~~~~lae~L~~~~p~-~-----~~~v~--f~~s 138 (459)
T PRK06082 70 DGKKYMDFHGNNVHQ-LGY-GHPHVIEKVKEQMAKLPFSPRRFT-NETAIECAEKLTEIAGG-E-----LNRVL--FAPG 138 (459)
T ss_pred CCCEEEEcccHhhcc-cCC-CCHHHHHHHHHHHHhCCCccCccC-CHHHHHHHHHHHHhCCC-C-----CCEEE--ECCC
Confidence 567788876332211 121 223444444455432111 1122 22223444444444311 1 24666 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-HHhhCCC------------CeeeeeecCCCC--CC-------cChH
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-IWRDAQI------------PERTYHYYDPDS--KS-------LDFA 183 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~g~------------~~~~v~~~~~~~--~~-------~d~e 183 (435)
|++|++.+..+........+|+....+|.+... .+...|. .+..+|..+... +. -+++
T Consensus 139 GseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (459)
T PRK06082 139 GTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYAD 218 (459)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHH
Confidence 999999997665555444788888888876643 2222221 112222100000 00 0135
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
.+++.+.+. ++..+|++....+..+...+++.+++|.++|++||+++|.||+..+|+..+ ..+....+ +....++
T Consensus 219 ~l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~fa~e~~-gv~PDiv 293 (459)
T PRK06082 219 YLEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG---EWFTHQAY-GIEPDIL 293 (459)
T ss_pred HHHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHhHhh-CCCCCEE
Confidence 577777643 456788877666654556788899999999999999999999988775543 12222222 2222233
Q ss_pred EEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 264 ~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+++|.+| .| ..+|.+++ +++ +...+.......+.+.++++..++.+.|+.-. + +...++.
T Consensus 294 ---~~gKgl~-gG~~P~~av~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~------~--~~l~~~~ 354 (459)
T PRK06082 294 ---CIGKGLG-GGLVPIAAMIT---KDK----YNTAAQISLGHYTHEKSPLGCAAALATIEVIE------Q--EGLLEKV 354 (459)
T ss_pred ---Eeccccc-CCCCcceEEEE---cHH----HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH------h--cCHHHHH
Confidence 3899998 66 48888864 665 54332210011355566776666666654211 1 1345566
Q ss_pred HHHHHHHHHHHHhhCCCC-CccccccCcceeEecCC---------C---HHHH-HHHhhhccEEEeCC-C---cEEec-c
Q 013839 343 QRKRTTLRQNLEKLGSSL-NWEHITNQLGMFCFSGL---------T---PYQV-DRLAKEFHIYMTQD-G---RISMA-G 403 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~---------~---~~~~-~~ll~~~gI~i~pg-g---Ris~~-~ 403 (435)
+++-++|.+.|+++-... .+......|.++. +.+ + ...+ ..+ .++||.+.+. + |++.. .
T Consensus 355 ~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~-ve~~~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~~~~~i~~~Ppl~ 432 (459)
T PRK06082 355 KADSQFMRERLLEMKAKYPLIGDVRGIGLLWG-VELVTDRHTKERAYDEAEAVLYRC-LNNGLSFKVSQGNVIQLSPPLI 432 (459)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeeeeeccceeE-EEEccCccccCccHHHHHHHHHHH-HhCCCEEEecCCCEEEEeCCCc
Confidence 666666666665541100 1122333443332 211 1 1223 444 4689999875 3 66642 2
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.++++++++++++.+++.++.
T Consensus 433 it~~eid~~~~~l~~~l~~~~ 453 (459)
T PRK06082 433 ITREELTQALAILEEAIAKIC 453 (459)
T ss_pred cCHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999998763
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-12 Score=125.34 Aligned_cols=345 Identities=12% Similarity=0.052 Sum_probs=193.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-C---CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-L---ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.++...||+..|.....-|.. .+++++++.+++..... . .+.. ....+|-+.+++...+ + .+++. +
T Consensus 43 ~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~~~~~~-~~~~~lae~L~~~~p~-~-----~~~v~--f 112 (459)
T PRK05965 43 ASGHQLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELPYATGYFHFGS-EPAIRLAAKLAERAPG-S-----LNHVY--F 112 (459)
T ss_pred CCCCEEEECcccHHhccCCCC-CHHHHHHHHHHHHhcCCcccccccCC-HHHHHHHHHHHhhCCC-C-----cCEEE--E
Confidence 467889999877421112222 23444555555542210 1 1111 1112344444443211 1 24666 8
Q ss_pred cCCchhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHHh-h---------CCC---CeeeeeecCCC--CCCcC
Q 013839 123 ALSGTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIWR-D---------AQI---PERTYHYYDPD--SKSLD 181 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~~-~---------~g~---~~~~v~~~~~~--~~~~d 181 (435)
+++|++|++.+.++.... . +| .+|+....+|.+...... . .|. .+..++..... .+.-|
T Consensus 113 ~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (459)
T PRK05965 113 TLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDD 192 (459)
T ss_pred eCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCC
Confidence 999999999997665543 1 33 578989989877643211 1 110 11222211000 01122
Q ss_pred --------hHhHHHHhhcCC-CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 182 --------FAALMDDIKNAP-DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 182 --------~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
++.+++.+.+.. ++..+|++...+...|+.. +++.++++.++|++||+++|.||+..+|+..+ ..+.
T Consensus 193 ~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a 269 (459)
T PRK05965 193 PQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG---PLFA 269 (459)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc---hhhh
Confidence 256777776432 4678888877777777754 77889999999999999999999998886543 1223
Q ss_pred HHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH-------HhhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ-------IARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
...+ +....++ +++|.++ .| ..+|.+++ +++ +.+.+.. .....+.+.++++..++.+.|+
T Consensus 270 ~~~~-gv~PDiv---~~gKgl~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~ 337 (459)
T PRK05965 270 CEAE-GVVPDLM---TVAKGLT-SGYVPMGAVLM---SDH----VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLR 337 (459)
T ss_pred Hhhc-CCCCCeE---Eechhhc-cCCcceeEEEE---cHH----HHHHHhccccccccccccCCCCCCHHHHHHHHHHHH
Confidence 3222 2222233 3699998 78 48998864 777 6665542 1123355666777666666653
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----------C-----HHHHHHHhhh
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----------T-----PYQVDRLAKE 388 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----------~-----~~~~~~ll~~ 388 (435)
.-+ -+...++.++.-++|.+.|+++.-...+......|. +.-+.+ + ...+...+.+
T Consensus 338 ~l~--------~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl-~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~ 408 (459)
T PRK05965 338 LYH--------EGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGL-LGALELVADKATKTPFDAALDPADRIFDRAYA 408 (459)
T ss_pred HHH--------hccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecce-EEEEEEeccccccCCCCchhHHHHHHHHHHHh
Confidence 211 123444556666666666665421001112233333 222211 1 1233333456
Q ss_pred ccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 389 FHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 389 ~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+||.+.+.| |+... ..+++++++++++|.++++++.+
T Consensus 409 ~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 409 NGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred CCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 899998865 55422 24899999999999999987643
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-13 Score=130.72 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=170.8
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecC-CchhHHHHHHHHHHHhCC-CCEEEEcCCCChhh-HH-HHhhCCC-C
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL-SGTGACRLFAEFQRRFHP-ESHIYFPDPTWSNH-HN-IWRDAQI-P 166 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~-gg~~a~~~~~~~~~~~~~-gd~Vlv~~p~y~~~-~~-~~~~~g~-~ 166 (435)
.-+.+.|+.+++++.... +++|+ ++. +||++++.+ +..++.+ ++.|++ .-.|+.- .. ..+..|+ +
T Consensus 48 ~~~~~~r~~l~~l~~~~~-----~~~v~--~~~gs~T~~~~~~--~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~ 117 (378)
T PRK03080 48 ALLKRVIEGTRELLSLPE-----GYEVG--IVPGSDTGAWEMA--LWSLLGARRVDHLA-WESFGSKWATDVVKQLKLED 117 (378)
T ss_pred HHHHHHHHHHHHHhCCCC-----CceEE--EECCchHHHHHHH--HHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCC
Confidence 345678888888874322 23566 665 899999998 6666764 455554 3344332 22 2356788 8
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. +++..+|+++ ++ . ++.|.+++.+|.||...+.+ +|++ +++|+++++|.+ +.++..+.+
T Consensus 118 v~~~~~--~~g~~~d~~~----i~---~-~~~V~~~h~~t~tG~~~pi~---~I~~--~~~g~~~vVDa~-qs~G~~pid 181 (378)
T PRK03080 118 PRVLEA--DYGSLPDLSA----VD---F-DRDVVFTWNGTTTGVRVPVA---RWIG--ADREGLTICDAT-SAAFALPLD 181 (378)
T ss_pred ceEecc--CCCCCCCHhh----cC---C-CCCEEEEecCCccceeccch---hhcc--ccCCCeEEEecc-cccccCCCC
Confidence 888875 3445667665 32 1 45688899999999999855 6666 788999999998 544433322
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccc-cCCcccEEEEEecChhHHHHHHHH------------------HHHHh-hcc
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGL-YGHRVGCLSILCVDSKQAAAIRSQ------------------IQQIA-RAM 306 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G~RvG~~~~~~~~~~~~~~~~~~------------------l~~~~-~~~ 306 (435)
+. +-++++.|..|.++. +| +|++.+ +++..+++... +.... ...
T Consensus 182 -----v~------~iD~~~~s~~K~l~~P~G--~g~l~v---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t 245 (378)
T PRK03080 182 -----WS------KLDVYTFSWQKVLGGEGG--HGMAIL---SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQT 245 (378)
T ss_pred -----HH------HCcEEEEehhhhCCCCCc--eEEEEE---CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCc
Confidence 11 126888899999853 56 577764 77733332210 00000 011
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc--c--Cc-ceeEec--C--
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT--N--QL-GMFCFS--G-- 376 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~-g~~~~~--~-- 376 (435)
...++.....++..+|+.- .+. .++...++.+++.+++++.|++++. +.... + .+ +...+. +
T Consensus 246 ~~tp~i~~i~~l~~al~~l-----~~~gG~e~i~~r~~~l~~~l~~~l~~~~~---~~~~~~~~~~~s~~i~~~~~~~~~ 317 (378)
T PRK03080 246 INTPSMLTVEDYLDQLDWA-----NSIGGLDALIARTAANASVLYDWAEKTPW---ATPLVADPATRSNTSVTLDFVDAQ 317 (378)
T ss_pred ccCchHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHHHHhCCC---cccccCCccccCccEEEEEcCCch
Confidence 1223334444434444321 112 3677788899999999999988863 12221 1 12 233321 3
Q ss_pred --CCHHHHHHHhhhccEEEeCC------C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 377 --LTPYQVDRLAKEFHIYMTQD------G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 377 --~~~~~~~~ll~~~gI~i~pg------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+.+..+++ +||.+..| + |+|+.. .+.+++++++++|++++++++
T Consensus 318 ~~~~~~~~~~l~~-~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 318 AAVDAAAVAKLLR-ENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred HHHHHHHHHHHHH-cCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 23345566654 58777643 2 999754 378999999999999887655
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-12 Score=125.09 Aligned_cols=343 Identities=10% Similarity=-0.008 Sum_probs=192.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.-...-| -..+++++++.+++... ....+.. +....+++.+...-... .+.+. ++
T Consensus 51 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~~~~~~~~~-----~~~~~lAe~L~~~~p~~--~~~v~--f~ 120 (453)
T PRK06943 51 RDGRRYLDAISSWWVNLFG-HANPRINAALKDQLDTLEHAMLAGCTH-----EPAIELAERLAALTGGT--LGHAF--FA 120 (453)
T ss_pred CCCCEEEEcchHHHHhcCC-CCCHHHHHHHHHHHHhcCCccccccCC-----HHHHHHHHHHHHhCCCC--CCEEE--Ee
Confidence 3568899998774211112 12233444444444321 1111221 23334444442211110 13666 89
Q ss_pred CCchhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHHh-hCCC------------CeeeeeecCCCC--CC---
Q 013839 124 LSGTGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIWR-DAQI------------PERTYHYYDPDS--KS--- 179 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~-~~g~------------~~~~v~~~~~~~--~~--- 179 (435)
++|++|++.+..+.... .+| .+|+....+|.+.....- ..|- .+..++..+... ++
T Consensus 121 ~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 200 (453)
T PRK06943 121 SDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETA 200 (453)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCH
Confidence 99999999997554322 123 678988888877642211 1110 122222211100 00
Q ss_pred -----cChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 180 -----LDFAALMDDIKNAPDSSFFLLHPS-AHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 180 -----~d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
-+++++++.+...+++..+|++.. .+...|.. .+++.++++.++|++||+++|.||+..+|+..+ ..+..
T Consensus 201 ~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG---~~fa~ 277 (453)
T PRK06943 201 ADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG---TFFAC 277 (453)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc---chhHH
Confidence 134677777765556677888766 36667774 578889999999999999999999998886543 12333
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH------hhccccCCChhHHHHHHHHhCCh
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI------ARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
..+ +....+++ ++|.++ .| ..+|.+++ .++ +.+.+..- ....+.+.+.++..++.+.|+.-
T Consensus 278 ~~~-gv~PDivt---~gKgl~-gG~~Pi~av~~---~~e----i~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i 345 (453)
T PRK06943 278 EQA-GVWPDFLC---LSKGIS-GGYLPLSLVLS---RDA----IFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLF 345 (453)
T ss_pred HhC-CCCCCeEe---eehhhc-cCcccceEEEE---cHH----HHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHH
Confidence 333 22223333 599998 78 48888864 777 66655421 12334556677766666666421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----C-----HHHHHHHhhhccEEEeCC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----T-----PYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~-----~~~~~~ll~~~gI~i~pg 396 (435)
. + +...++.++.-+++.+.|+++.-...+......|- +.-+.+ + ...+...+.++||.+.+.
T Consensus 346 ~------~--~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl-~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~ 416 (453)
T PRK06943 346 A------E--DDVLARNARKSARLRAALAPLAAHPQVRHLRQRGT-IFAFDVALDGDAARTFSRRFFEAALERELLLRPI 416 (453)
T ss_pred H------h--cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEecccc-EEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec
Confidence 1 1 12345555566666666665521111222333333 332222 1 123333345689999887
Q ss_pred C---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 397 G---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 g---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
| ||+.. ..+++++++++++|.+++++.
T Consensus 417 g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 417 GTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 6 77732 348999999999999999875
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-12 Score=124.81 Aligned_cols=344 Identities=10% Similarity=0.036 Sum_probs=192.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...+|+..|.....-|.. .+++++++.+++... ....|.. ....+|.+.+++.. ... .+.+. ++
T Consensus 44 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~~~~~~~~~~-~~~~~lae~L~~~~-p~~-----~~~v~--f~ 113 (466)
T PRK07030 44 FEGKRYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLEHVILAGFSH-EPVIELSERLVKIT-PPG-----LSRCF--YA 113 (466)
T ss_pred CCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcCCccccccCC-HHHHHHHHHHHHhC-CCC-----cCEEE--Ee
Confidence 366889999877421111212 233444444444321 1111221 11223444444432 111 24677 89
Q ss_pred CCchhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHHhhC-CC------------CeeeeeecCCC--CCCc--
Q 013839 124 LSGTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIWRDA-QI------------PERTYHYYDPD--SKSL-- 180 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~~-- 180 (435)
++|++|++.+..+.... . +| .+|+...-+|.+........ |. .+..+|..+.. ..+.
T Consensus 114 ~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~ 193 (466)
T PRK07030 114 DNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSW 193 (466)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCH
Confidence 99999999997655433 1 23 67888888887764332211 11 12222221000 0111
Q ss_pred ------ChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 181 ------DFAALMDDIKNAPDSSFFLLHPS-AHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 181 ------d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+++.+++.+.+.+++..++++.. .+...|.. .+++.+++|.++|++||+++|.||+..+|+..+ ..+..
T Consensus 194 ~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG---~~~a~ 270 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG---TMFAC 270 (466)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc---cchHH
Confidence 24566777765556677777765 35556764 467889999999999999999999998886543 12233
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH-------HhhccccCCChhHHHHHHHHhCC
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ-------IARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
..+ +....+++ ++|.++ .| +.+|.+++ +++ +.+.+.. .....+.+.++++..++.+.|+.
T Consensus 271 ~~~-gv~PDiv~---~gKgl~-gG~~Pi~av~~---~~e----i~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~ 338 (466)
T PRK07030 271 EQA-GIRPDFLC---LSKALT-GGYLPLAAVLT---TDT----VYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDI 338 (466)
T ss_pred Hhc-CCCCCEEe---eehhcc-CCcccceEEEe---cHH----HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 322 22223333 599998 78 48888864 777 6665532 11234556677777666666642
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------------C---HHHHHHHhhhc
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------------T---PYQVDRLAKEF 389 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------------~---~~~~~~ll~~~ 389 (435)
-. + +...++.++.-+++.+.|+++.-...+...... |++.-+.+ + ...+...+.++
T Consensus 339 i~------~--~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 409 (466)
T PRK07030 339 FE------Q--DNVIENNRALARRMAEATAHLADHPHVAEVRQT-GMILAIEMVQDKASKTPYPWQERRGLKVYQHALER 409 (466)
T ss_pred HH------h--cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEec-eeEEEEEeccCccccccCcchhHHHHHHHHHHHHC
Confidence 11 1 234455666666666666654210012222333 33332222 0 01233333568
Q ss_pred cEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 390 HIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 390 gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
|+.+.+.| |+... ..+++++++++++|.++++++.
T Consensus 410 Gvl~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (466)
T PRK07030 410 GALLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIAT 448 (466)
T ss_pred CeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99998866 66532 3489999999999999998873
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-12 Score=125.15 Aligned_cols=348 Identities=11% Similarity=0.054 Sum_probs=193.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE-FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++...||+..|.....-| --.+.+++++.+++.... .... .....+.+..+++.+...... .-+++. ++++
T Consensus 45 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~~lae~L~~~~p~--~~~~v~--f~~S 117 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALG-FSEQRLVEAAARQMKKLPFYHTF--SHKSHGPVIDLAEKLVAMAPV--PMSKVF--FTNS 117 (460)
T ss_pred CCCCEEEEcchhHHhccCC-CCCHHHHHHHHHHHHhCCCeecc--cccCCHHHHHHHHHHHHhCCC--CCCEEE--EeCC
Confidence 4678999998874211122 123344555555554321 0111 011123333444444221110 023666 8999
Q ss_pred chhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHHhh-CCC------------CeeeeeecCCCCCC-------
Q 013839 126 GTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIWRD-AQI------------PERTYHYYDPDSKS------- 179 (435)
Q Consensus 126 g~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~~~------- 179 (435)
|++|++++.++.... . +| .+|+...-+|.+....... .+. .+..++..+...+.
T Consensus 118 GseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 197 (460)
T PRK06105 118 GSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEE 197 (460)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChH
Confidence 999999997554322 1 23 5788888888766432211 110 11112210000000
Q ss_pred ----cChHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 180 ----LDFAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 180 ----~d~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
.+.+++++.+.+. +++..+|++...+.-.|... +++.++++.++|++||+++|.||++.+|+-.+ ..+...
T Consensus 198 ~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG---~~f~~~ 274 (460)
T PRK06105 198 AFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG---NMFGCE 274 (460)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc---hhhhHH
Confidence 0135677777432 34567888876666667764 78889999999999999999999988886543 122332
Q ss_pred HhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHHHhCCh
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
.+ +.... +-+++|.++ .| ..+|.+++ +++ +.+.+.... ...+.+.++++..++.+.|+.-
T Consensus 275 ~~-~v~PD---i~~~gK~lg-gG~~P~~av~~---~~~----i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i 342 (460)
T PRK06105 275 TF-GIKPD---ILVMSKQLS-SSYQPLSAVLM---NEK----VYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAII 342 (460)
T ss_pred hc-CCCCC---eeeeecccc-cCcccceEEEE---cHH----HHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 22 22222 336899998 55 57888864 777 666654311 1235566677766666666421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----------C-----HHHHHHHhhhcc
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----------T-----PYQVDRLAKEFH 390 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----------~-----~~~~~~ll~~~g 390 (435)
. + +...++.+++.++|.+.|+++.-...+......| ++.-+.+ + ...+...+.++|
T Consensus 343 ~------~--~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~G 413 (460)
T PRK06105 343 E------E--RDLVGNAAERGARLQARLRALADHPLVGEVRGVG-LIAAVELVADKATKTPFEPPGKVGARANAAAHEHG 413 (460)
T ss_pred H------h--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCC
Confidence 1 1 2345566666666766666551100112223333 3322211 0 123433445789
Q ss_pred EEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 391 IYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 391 I~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
|.+.+.| |++.. ..+++++++++++|.++++++..
T Consensus 414 vl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 414 VISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred eEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 77643 24899999999999999987653
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-12 Score=124.30 Aligned_cols=345 Identities=12% Similarity=0.037 Sum_probs=193.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.....-| -..+++++++.+++.. .....+ ......+|-+.+++.... . .+.+. ++
T Consensus 53 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~l~~~~~~~~-~~~~~~~lae~L~~~~p~-~-----~~~v~--f~ 122 (460)
T PRK06916 53 VNGNEYYDGVSSIWLNVHG-HQVPELDEAIREQLNKIAHSTLLGL-ANVPSILLAEKLIEVVPE-G-----LKKVF--YS 122 (460)
T ss_pred CCCCEEEEcchhHHHhhcC-CCCHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCCC-C-----CCEEE--Ee
Confidence 3567888987764211112 1122334444444432 111112 122223455555544311 1 13666 89
Q ss_pred CCchhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHHhh-CCC------------CeeeeeecCCC--CCC---
Q 013839 124 LSGTGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIWRD-AQI------------PERTYHYYDPD--SKS--- 179 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~--~~~--- 179 (435)
++|++|++.+..+.... .+| .+|+....+|.+....... .|. ....+|..+.. .++
T Consensus 123 ~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~ 202 (460)
T PRK06916 123 DSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDK 202 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCCh
Confidence 99999999997655443 233 6889899888776432221 111 11222221000 001
Q ss_pred -----cChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 180 -----LDFAALMDDIKNAPDSSFFLLHPS-AHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 180 -----~d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
-+++.+++.+...+++..+|++.. .+.-.|.. .+++.++++.++|++||+++|.||+..+|+..+ ..+..
T Consensus 203 ~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG---~~~a~ 279 (460)
T PRK06916 203 AEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG---KMFAC 279 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc---hhhHH
Confidence 135667777765556677887765 46666776 488889999999999999999999988775443 12233
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH-------HhhccccCCChhHHHHHHHHhCC
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ-------IARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
..+ +....++ +++|.++ .| +.+|.+++ +++ +.+.+.. .....+.+.++++..++.+.|+.
T Consensus 280 ~~~-gv~PDiv---~~gK~l~-gG~~Pi~av~~---~~e----i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~ 347 (460)
T PRK06916 280 EHE-NVTPDIM---TAGKGLT-GGYLPIAITVT---TDE----IYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLEL 347 (460)
T ss_pred Hhc-CCCCCee---eeehhhh-cCccccceeee---cHH----HHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence 222 2222232 4799998 77 58888864 777 6555432 11223455567766666666532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------------C---HHHHHHHhhhc
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------------T---PYQVDRLAKEF 389 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------------~---~~~~~~ll~~~ 389 (435)
-. + +...++.+++-+++.+.|+++.-...+......|.++. +.+ + ...+...+.++
T Consensus 348 l~------~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~g-iel~~~~~~~~~~~~~~~~~~~i~~~~~~~ 418 (460)
T PRK06916 348 YE------K--TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVG-IELVKNKETKEPFEWTERVGVQVCKRSREL 418 (460)
T ss_pred HH------h--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceee-EEeecccccccCCCchhhHHHHHHHHHHHC
Confidence 11 1 23445566666667777765421001112333333322 211 0 12343344568
Q ss_pred cEEEeCCC---cEEe-ccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 390 HIYMTQDG---RISM-AGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 390 gI~i~pgg---Ris~-~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
||.+.+.| |+.. ...+++++++++++|.++++++.+
T Consensus 419 Gvl~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 419 GMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred CeEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 99999876 6653 234899999999999999986543
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-12 Score=123.41 Aligned_cols=341 Identities=13% Similarity=0.047 Sum_probs=189.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.-...-| ...+++++++.+++.. .....+.. ....+|.+.+++...+ . .+++. ++
T Consensus 46 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~l~~~~~~~~~~-~~~~~la~~L~~~~p~-~-----~~~v~--f~ 115 (445)
T PRK09221 46 ADGRKILDGTAGLWCCNAG-HGRPEIVEAVARQAATLDYAPAFQMGH-PLAFELAERLAELAPG-G-----LDHVF--FT 115 (445)
T ss_pred CCCCEEEEccccHhhccCC-CCCHHHHHHHHHHHHhccCccccccCC-HHHHHHHHHHHHhCCC-C-----CCEEE--Ee
Confidence 3567899998774211112 1223344444444432 11111211 1122344444443311 1 23677 89
Q ss_pred CCchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHhhC-C------------CCeeeeeecC-CC--CCCc-
Q 013839 124 LSGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWRDA-Q------------IPERTYHYYD-PD--SKSL- 180 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~-~~--~~~~- 180 (435)
++|++|++.+..+...+. ++ .+|+....+|.+........ | ..+..+|... .. .+..
T Consensus 116 ~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
T PRK09221 116 NSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKG 195 (445)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCC
Confidence 999999999976555442 22 57888888887664321111 1 0122222210 00 0111
Q ss_pred -------ChHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 181 -------DFAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 181 -------d~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
+.+++++.+... .++..+|++.......|... +.+.+++|.++|++||+++|.||+..+|+..+ ..+.
T Consensus 196 ~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~~ 272 (445)
T PRK09221 196 QPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---AAFA 272 (445)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc---hhhH
Confidence 135677777643 24677888877777778765 66779999999999999999999987776443 1222
Q ss_pred HHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH-------HhhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ-------IARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
...+ +.... +-+++|.++ .| ..+|.+++ +++ +.+.+.. .....+.+.++++..++.+.|+
T Consensus 273 ~~~~-gv~PD---i~~~gK~l~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~ 340 (445)
T PRK09221 273 AERF-GVTPD---IITFAKGLT-NGAIPMGAVIA---SDE----IYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLD 340 (445)
T ss_pred HHhc-CCCCC---EEEeccccc-cCcccceeeEE---cHH----HHHhhccCcccccccccccCCCcCHHHHHHHHHHHH
Confidence 2222 21112 346899997 45 56788753 777 6665532 1122345566666666655553
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCccccccCcceeEecCC------C---HHHHHHHhhhccEEE
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCFSGL------T---PYQVDRLAKEFHIYM 393 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~------~---~~~~~~ll~~~gI~i 393 (435)
.- .+ +...++.+++.+++++.|+++. .+ .+...... |++.-+.+ + ...+.+.+.++||.+
T Consensus 341 ~i------~~--~~l~~~~~~~g~~l~~~l~~l~~~~-~v~~vrg~-Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~ 410 (445)
T PRK09221 341 IY------RE--EDLFERAAELAPYFEDAVHSLKGLP-HVIDIRNI-GLVAGIELAPRPGAPGARGYEAFMKCFEKGLLV 410 (445)
T ss_pred HH------Hh--ccHHHHHHHHHHHHHHHHHhhccCC-CEEEEecC-ceEEEEEEecccccccchHHHHHHHHHHCCeEE
Confidence 21 11 2345677777788888887662 11 11222222 22222211 1 123333345689999
Q ss_pred eCCC---cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 394 TQDG---RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 394 ~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
.++| ||+.. ..+++++++++++|.+++.+
T Consensus 411 ~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 411 RYTGDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred eecCCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 8876 77743 24899999999999999865
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-12 Score=124.25 Aligned_cols=346 Identities=12% Similarity=0.024 Sum_probs=190.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE-FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..||+..|.....-|.. .+++++++.+++.... ...+. ....+.+..+|+.+...-.. .-+++. ++++
T Consensus 47 ~dG~~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~~~--~~~~~~~~~lAe~L~~~~p~--~~~~v~--f~~s 119 (461)
T PRK07482 47 AQGRRYIDAFAGLYCVNVGYG-RTEVAEAIAEQAKELAYYHTYV--GHGTEASITLSKRIIDRAPA--GMSKVY--YGLS 119 (461)
T ss_pred CCCCEEEEcccchhhhcCCCC-CHHHHHHHHHHHHhcCcccccc--ccCCHHHHHHHHHHHHhCCC--CcCEEE--EeCc
Confidence 467889999888532222222 3344555555554321 11110 01123444455554221100 024677 8999
Q ss_pred chhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHHhh-C---------CC---CeeeeeecCCCC---CC----
Q 013839 126 GTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIWRD-A---------QI---PERTYHYYDPDS---KS---- 179 (435)
Q Consensus 126 g~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~~~-~---------g~---~~~~v~~~~~~~---~~---- 179 (435)
|++|++.+.++.... . +| .+|+....+|.+....... . +. .+..++..+... .+
T Consensus 120 GSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 199 (461)
T PRK07482 120 GSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEE 199 (461)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHH
Confidence 999999997655433 1 22 5788888888775432111 1 10 111121100000 00
Q ss_pred ----cChHhHHHHhhc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 180 ----LDFAALMDDIKN-APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 180 ----~d~e~l~~~i~~-~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
.+++.+++.+.+ .+++..+|++...+...|... +++.+++|.++|++||+++|.||+..+|+..+ ..+...
T Consensus 200 ~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~~ 276 (461)
T PRK07482 200 QFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG---SMFGSD 276 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---chhhHH
Confidence 135677777753 235578888877666667774 67789999999999999999999998886543 122332
Q ss_pred HhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCCh
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
.+ +...++++ ++|.++ .|. .+|.+++ .++ +.+.+... ....+.+.++++..++.+.|+.-
T Consensus 277 ~~-gv~PDiv~---~gKgl~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~ 344 (461)
T PRK07482 277 HY-GIEPDLIT---VAKGLT-SAYAPLSGSIV---GEK----VWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDIL 344 (461)
T ss_pred hc-CCCCCEEE---Eccccc-cCccccceeee---cHH----HHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHH
Confidence 22 22223333 699997 674 7887754 667 65555421 12235567777777776666421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CccccccCcceeEecCC----------C-----HHHHHHHhhhc
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL-NWEHITNQLGMFCFSGL----------T-----PYQVDRLAKEF 389 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~----------~-----~~~~~~ll~~~ 389 (435)
. + +...++.++.-+++.+.|+++-... .+......|. +.-+.+ + ...+...+.++
T Consensus 345 ~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl-m~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~ 415 (461)
T PRK07482 345 E------R--ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGM-LAAVEFVADRDDRTPFDPALKIGPQVSAAALER 415 (461)
T ss_pred H------h--CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecee-EEEEEeccCCCcCCCCChhhHHHHHHHHHHHHC
Confidence 1 1 1233445555556666665431100 1122333333 332211 1 12333334568
Q ss_pred cEEEeCC--C---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 390 HIYMTQD--G---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 390 gI~i~pg--g---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
||.+.+. | |+... ..+++++++++++|.++++++
T Consensus 416 Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 416 GVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998653 4 66532 348999999999999999765
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-12 Score=122.90 Aligned_cols=338 Identities=9% Similarity=0.029 Sum_probs=185.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..+|+..|.....-| ...+++++++.+++.......+ .......+|.+.+++... .. -+.+. +++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p-~~-----~~~v~--f~~ 107 (422)
T PRK05630 37 EDGSTVIDAMSSWWSAAHG-HGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTD-NG-----LDHVF--YSD 107 (422)
T ss_pred CCCCEEEEcchhHHHhcCC-CCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCC-CC-----cCEEE--EeC
Confidence 4678899998875312122 1223444444455542211111 111122345555554431 11 24677 899
Q ss_pred CchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHh-hCCC-------------CeeeeeecCCCCCCcC---
Q 013839 125 SGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWR-DAQI-------------PERTYHYYDPDSKSLD--- 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~~~~~d--- 181 (435)
+|++|++.+..+..... +| .+|+....+|.+...... ..+- ....+|.. .....+
T Consensus 108 SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~ 185 (422)
T PRK05630 108 SGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAP--PVRGSSPQE 185 (422)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCC--cccCCChHH
Confidence 99999999976554432 23 578888888877543222 1110 11222221 101111
Q ss_pred ----hHhHHHHhhcCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNAPDSSFFLLHPSA-HNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
.+.+++.+. ++..++++... +...|... +.+.+++|.++|++||+++|.||++.+++..+ ..+....+
T Consensus 186 ~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~~ 259 (422)
T PRK05630 186 ISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG---ELFATLAA 259 (422)
T ss_pred HHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc---hhhHHHhc
Confidence 233444444 46777777653 66677754 67789999999999999999999987775443 12222222
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH------hhccccCCChhHHHHHHHHhCChhhH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI------ARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
+....++ +++|.++ .| ..+|.+++ +++ +.+.+... ....+++.++++..++.+.|+.-.
T Consensus 260 -gv~PDi~---t~gK~l~-gG~~p~~av~~---~~~----i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~-- 325 (422)
T PRK05630 260 -GVTPDIM---CVGKALT-GGFMSFAATLC---TDK----VAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIE-- 325 (422)
T ss_pred -CCCCCee---eeechhh-cCccccceeec---cHH----HHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHH--
Confidence 2222222 6899986 56 46788863 777 66665421 112345566666666666554211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC---cEEe
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG---RISM 401 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg---Ris~ 401 (435)
+ ....++..++.+++.+.|+.+.....+...... |.+.-+.+ ....+...+.++||.+.+.| ||..
T Consensus 326 ----~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~-Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~g~~l~~~P 398 (422)
T PRK05630 326 ----T--GMWRKQVKRIEAELIAGLSPLAHLPGVADVRVL-GAIGVVEMEQPVDMEEATQAAVDHGVWLRPFGRLVYVMP 398 (422)
T ss_pred ----h--CcHHHHHHHHHHHHHHHHHHhhcCCCeeeeecc-ccEEEEEECCcccHHHHHHHHHHCCeEEEecCCEEEEEC
Confidence 1 123345555556666666543210011222222 33333322 23344444456899998876 6654
Q ss_pred c-cCCCCcHHHHHHHHHHHHHh
Q 013839 402 A-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
. ..+++++++++++|.++++.
T Consensus 399 pL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 399 PYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred CccCCHHHHHHHHHHHHHHHhc
Confidence 2 24899999999999998864
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-13 Score=140.00 Aligned_cols=297 Identities=14% Similarity=0.088 Sum_probs=182.8
Q ss_pred ccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHH---HhhCCCCe
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNI---WRDAQIPE 167 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~ 167 (435)
-+.+.|+.+++++.... ++ +|+ +|.|+|+|+.+++ ..+ +.+||+|++..-.|.+.... ++..|+++
T Consensus 79 ~~e~aR~~ia~~lga~~-----~~~~Vv--FtsnaT~alnlva--~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v 149 (805)
T PLN02724 79 TIESARQQVLEYFNAPP-----SDYACV--FTSGATAALKLVG--ETFPWSSESHFCYTLENHNSVLGIREYALEKGAAA 149 (805)
T ss_pred HHHHHHHHHHHHhCCCc-----cceEEE--EeCChHHHHHHHH--HHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeE
Confidence 35788999999984321 22 356 8999999999984 433 67999999977666544433 34568888
Q ss_pred eeeeecCC------CCCCcCh--HhHHHHhh----c---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-----
Q 013839 168 RTYHYYDP------DSKSLDF--AALMDDIK----N---APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK----- 227 (435)
Q Consensus 168 ~~v~~~~~------~~~~~d~--e~l~~~i~----~---~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~----- 227 (435)
..++...+ ....+++ +.+++.++ . ..++++++.+++.+|-||..++.+.++++.+.++.+
T Consensus 150 ~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g 229 (805)
T PLN02724 150 IAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSG 229 (805)
T ss_pred EeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCc
Confidence 88876311 1122333 55665431 0 124568999999999999999987554444433332
Q ss_pred CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHh---
Q 013839 228 GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIA--- 303 (435)
Q Consensus 228 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~--- 303 (435)
++++++|.+ +.....+. .+. ..+-++++.|+.|.+| ..| +|.+.+ .++ +.+.+....
T Consensus 230 ~~~v~vDaa-Q~~g~~pi-----Dv~----~~~~Dfl~~S~HK~~GgP~G--~G~L~v---r~~----~~~~l~p~~~GG 290 (805)
T PLN02724 230 RWMVLLDAA-KGCGTSPP-----DLS----RYPADFVVVSFYKIFGYPTG--LGALLV---RRD----AAKLLKKKYFGG 290 (805)
T ss_pred ceEEEeehh-hhcCCCCC-----Chh----hcCCCEEEEecceeccCCCC--ceEEEE---ehh----hhhhhcCCccCC
Confidence 368999998 44443322 121 1245788999999998 445 677764 555 433333210
Q ss_pred ---------------------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---
Q 013839 304 ---------------------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS--- 359 (435)
Q Consensus 304 ---------------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--- 359 (435)
+.-..+++..+..++.+++.-.. ....+++.++..+..+++.+.|+++.-.
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~-----~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~ 365 (805)
T PLN02724 291 GTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLN-----RLTISAIAMHTWALTHYVANSLRNLKHGNGA 365 (805)
T ss_pred CceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 11122344444445555543211 1235677788888889999999877410
Q ss_pred CCccccc---------cCcceeEec--CC-----CHHHHHHHhhhccEEEeCC---------------------------
Q 013839 360 LNWEHIT---------NQLGMFCFS--GL-----TPYQVDRLAKEFHIYMTQD--------------------------- 396 (435)
Q Consensus 360 ~~~~~~~---------~~~g~~~~~--~~-----~~~~~~~ll~~~gI~i~pg--------------------------- 396 (435)
..+.++. .+++.+.|. +. ...++..++.++||.++.|
T Consensus 366 ~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~ 445 (805)
T PLN02724 366 PVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGH 445 (805)
T ss_pred eEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCC
Confidence 0133332 234555544 32 3556777777788888522
Q ss_pred --------------C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 397 --------------G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 --------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
| |+|++.. |.+|++++++.|++..-.
T Consensus 446 ~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~ 488 (805)
T PLN02724 446 VCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVS 488 (805)
T ss_pred ccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhc
Confidence 3 8887644 789999999999997643
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-11 Score=122.12 Aligned_cols=281 Identities=13% Similarity=0.020 Sum_probs=166.0
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHh-hC---------C---CCeeeeeecC--
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWR-DA---------Q---IPERTYHYYD-- 174 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~-~~---------g---~~~~~v~~~~-- 174 (435)
+.+. ++++|++|++.+.++..... +| .+|+....+|.+.....- .. + ..+..+|...
T Consensus 107 ~~v~--f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~ 184 (442)
T PRK13360 107 NHVF--FTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDL 184 (442)
T ss_pred CEEE--EeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchh
Confidence 3666 89999999999976555442 22 579989988877643211 11 1 1122222210
Q ss_pred CC-CCCc--------ChHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 175 PD-SKSL--------DFAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 175 ~~-~~~~--------d~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
.. .+.. ..+.+++.+... +++..+|++.......|... +++.+++|.++|++||+++|.||+..+++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~Grt 264 (442)
T PRK13360 185 ARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRL 264 (442)
T ss_pred hccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 00 0111 145777777543 34567888777676677764 6778999999999999999999998777544
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHH
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGI 315 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q 315 (435)
+. .+....+ +.... + -+++|.++ .| +.+|.+++ +++ +.+.+... ....+.+.++++.
T Consensus 265 G~---~~a~~~~-gv~PD-i--vt~gK~l~-gG~~P~gav~~---~~~----i~~~~~~~~~~~~~~~~~~T~~g~pl~~ 329 (442)
T PRK13360 265 GA---PFAAQYF-GVTPD-L--LTCAKGLT-NGAIPMGAVFV---SSE----IHDAFMQGPEAGIEFFHGYTYSGHPLAC 329 (442)
T ss_pred cc---chhhhhc-CCCCc-e--eeeeeccc-cCccceEEEEE---cHH----HHHHhhcCCccccccccCCCCCCCHHHH
Confidence 31 1222222 22112 2 37899997 45 67888753 777 66555321 1223455666766
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------C--H-HHHHHH
Q 013839 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------T--P-YQVDRL 385 (435)
Q Consensus 316 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~--~-~~~~~l 385 (435)
.++.+.|+.- ++ +...++.+++.+++.+.|+++.....+...... |++.-+.+ . . +....+
T Consensus 330 aaa~a~L~~l------~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-Gl~~~~~l~~~~~~~~~~~~~~~~~l 400 (442)
T PRK13360 330 AAALATLDLY------ER--EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNL-GLVGAVELAPRDGKPGKRAYEVFLKC 400 (442)
T ss_pred HHHHHHHHHH------Hh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeecc-ceEEEEEEecCCCCcchhHHHHHHHH
Confidence 6666666421 11 235566677777777777765310011112222 22221111 1 1 233444
Q ss_pred hhhccEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 386 AKEFHIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 386 l~~~gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.++||.+.+.| ||+.. ..+++++++++++|.++++++
T Consensus 401 -~~~Gvl~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 401 -FEKGLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred -HHCCcEEEecCCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 56899998876 78743 248999999999999998654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-12 Score=135.28 Aligned_cols=299 Identities=10% Similarity=0.026 Sum_probs=189.0
Q ss_pred CCCCCC---Cccc----HHHHHHHHHhHcCCCCccccCCCeeeEecCCch----hHHHHHHHHHHHhCC-CC----EEEE
Q 013839 85 FLESIS---ASVS----TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT----GACRLFAEFQRRFHP-ES----HIYF 148 (435)
Q Consensus 85 ~~~Y~~---~~g~----~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~----~a~~~~~~~~~~~~~-gd----~Vlv 148 (435)
.+-|.| .+|+ .++|+.+++++ +. +.|. ++.+++ .|+.++ +.+.+.+ || +|++
T Consensus 554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~-g~-------~~v~--f~pnaga~ge~a~~~v--i~~~~~~~Gd~~r~~vli 621 (993)
T PLN02414 554 IHPFAPVDQAQGYQEMFEDLGDLLCEIT-GF-------DSFS--LQPNAGAAGEYAGLMV--IRAYHLSRGDHHRNVCII 621 (993)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh-CC-------CeEE--EcCCCcHHHHHHHHHH--HHHHHhccCCCCCCEEEe
Confidence 455666 3454 45666666665 33 3666 787777 677777 5555655 88 8999
Q ss_pred cCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 013839 149 PDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 149 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 228 (435)
+...+......+.+.|++++.+++ + +++.+|+++|+++++.+.+++++|++.+|+|-+|... ++++|+++|+++|
T Consensus 622 ~~~aH~sn~a~a~~~G~~vv~v~~-d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~---~I~eI~~iah~~G 696 (993)
T PLN02414 622 PVSAHGTNPASAAMCGMKIVVVGT-D-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEE---GIDEICDIIHDNG 696 (993)
T ss_pred CCCcCccCHHHHHHCCCEEEEecc-C-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccc---hHHHHHHHHHHcC
Confidence 998887777777889999999998 3 4568999999999985434789999999999998864 4679999999999
Q ss_pred ceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc----ccCCcccEEEEEecChhHHHHHHHHHHHHh-
Q 013839 229 HFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG----LYGHRVGCLSILCVDSKQAAAIRSQIQQIA- 303 (435)
Q Consensus 229 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g----~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~- 303 (435)
+++++|.+.. ....+. ..+...+-+++.+|..|.|+ ..|-.+|++.+ .+. +...+-...
T Consensus 697 alv~vDgAq~-~a~~~l--------~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~---~~~----L~p~lPg~~v 760 (993)
T PLN02414 697 GQVYMDGANM-NAQVGL--------TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KKH----LAPFLPSHPV 760 (993)
T ss_pred CEEEEEecCH-HhccCc--------CCccccCCCEEEecCCccCCcCcccCCCCeeeEEE---chh----hcccCCCCcc
Confidence 9999999942 121111 00122356788899999764 23455788853 555 333222100
Q ss_pred ----------hccccCC---ChhHH----HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 304 ----------RAMYGSP---PVHGI----LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 304 ----------~~~~~~~---~~~~q----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
...+.+. ...+| .++..++..-+ .+.+++..+....+.+++.+.|++. .+ +.+..
T Consensus 761 ~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG-----~~Gl~~~a~~a~~nAnYl~~rL~~~-~~--~~~~~ 832 (993)
T PLN02414 761 VPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG-----SEGLTDASKIAILNANYMAKRLEGH-YP--VLFRG 832 (993)
T ss_pred ccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC-----HhHHHHHHHHHHHHHHHHHHHHHhh-CC--ccccC
Confidence 0111111 11111 12222332211 1557777888888999999999763 21 22322
Q ss_pred cCcce---eE--ec------CCCHHHH-HHHhhhccEEEe----CC--C-cEEeccC-CCCcHHHHHHHHHHHHHhhhh
Q 013839 367 NQLGM---FC--FS------GLTPYQV-DRLAKEFHIYMT----QD--G-RISMAGV-TTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 367 ~~~g~---~~--~~------~~~~~~~-~~ll~~~gI~i~----pg--g-Ris~~~~-~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.+.+ |+ +. +.+.+.+ .+|+ ++||... |. . |++..-. +.+++++++++|+++..+..+
T Consensus 833 ~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 833 KNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred CCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11 11 1333444 6665 6888653 22 2 8876432 788999999999988877653
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-12 Score=115.97 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=121.1
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 169 (435)
...|.+.|+..-.|. .++.+.+|+.|+..+ ++.++.+||+|+..+--|++... .++..|.++.+
T Consensus 64 ~~vlE~RiAaLEGG~----------aa~a~aSG~AA~~~a--i~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~f 131 (426)
T COG2873 64 TDVLEERIAALEGGV----------AALAVASGQAAITYA--ILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRF 131 (426)
T ss_pred HHHHHHHHHHhhcch----------hhhhhccchHHHHHH--HHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEE
Confidence 346666676664333 345689999998888 99999999999988877766544 45688999988
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++- .|++.++++++ ++||+|++..-.||.+.+++ +++|.++|++|++++|+|..+..-.
T Consensus 132 vd~-------~d~~~~~~aI~---~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpy-------- 190 (426)
T COG2873 132 VDP-------DDPENFEAAID---ENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPY-------- 190 (426)
T ss_pred eCC-------CCHHHHHHHhC---cccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcce--------
Confidence 843 37899999999 89999999999999998875 5599999999999999999853311
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
-++. -...-.|++.|.||..|-.|--+|-+++
T Consensus 191 -l~rP--~~hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 191 -LCRP--IEHGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred -ecch--hhcCCCEEEEeecccccCCccccceEEE
Confidence 1111 1234578899999999888888888876
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-11 Score=121.77 Aligned_cols=349 Identities=11% Similarity=0.006 Sum_probs=189.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.....-| ...+++++++.+++... .+.+.... ..+....+++.+...-.. ..+.+. ++++|
T Consensus 28 ~dG~~ylD~~~g~~~~~lG-h~hp~v~~Ai~~ql~~~-~~~~~~~~-~~~~~~~lae~L~~~~p~--~~~~v~--f~~sG 100 (447)
T PRK06917 28 QNGNKYFDGSSGAVTAGIG-HGVKEIADAIKEQAEEV-SFVYRSQF-TSEPAEKLAKKLSDLSPG--DLNWSF--FVNSG 100 (447)
T ss_pred CCCCEEEECchhHHhccCC-CCCHHHHHHHHHHHhhC-cCcccccc-CCHHHHHHHHHHHHhCCC--CCCEEE--EeCCh
Confidence 4668899998774211112 12334444444554422 11111101 113334444444221110 023566 89999
Q ss_pred hhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHHh-hCCC------------CeeeeeecCCCC--CC------
Q 013839 127 TGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIWR-DAQI------------PERTYHYYDPDS--KS------ 179 (435)
Q Consensus 127 ~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~-~~g~------------~~~~v~~~~~~~--~~------ 179 (435)
++|++.+..+.... .+| .+|+....+|.+...... ..+. .+..++...... ++
T Consensus 101 sEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 180 (447)
T PRK06917 101 SEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTC 180 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHH
Confidence 99999997554332 133 679988888877654322 1111 011111100000 00
Q ss_pred --cChHhHHHHhhcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH
Q 013839 180 --LDFAALMDDIKNAP-DSSFFLLHPSAHN-PTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI 254 (435)
Q Consensus 180 --~d~e~l~~~i~~~~-~~~~~v~~~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 254 (435)
-+++.+++.+.+.. ++..++++..... --|+ ..+++.+++|.++|++||+++|.||+..+|+-.+ ..+....
T Consensus 181 ~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG---~~~a~~~ 257 (447)
T PRK06917 181 QLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG---AMFAMEH 257 (447)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc---chhhHHh
Confidence 12456677776442 3567777755443 3445 4578889999999999999999999988775433 1222222
Q ss_pred hhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHh----hccccCCChhHHHHHHHHhCChhhHH
Q 013839 255 FLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIA----RAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 255 ~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
+ +....+ -+++|.++ .|. .+|.+++ .++ +.+.+.... ...+.+.++++..++.+.|+.-.
T Consensus 258 ~-gv~PDi---~~~gK~l~-~G~~Pi~a~~~---~~~----i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~--- 322 (447)
T PRK06917 258 W-GVEPDI---MTLGKGLG-AGYTPIAATVV---SDR----VMEPILRGSRSIMSGHTLSANPLSAATALAVLEYME--- 322 (447)
T ss_pred c-CCCCCE---EEeeehhc-cCCcceEEEEE---cHH----HHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHH---
Confidence 2 222222 35799998 675 7888864 777 666654311 12355667777666666664211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CccccccCcceeEecCC------------C---HHHHHHHhhhccEEE
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSL-NWEHITNQLGMFCFSGL------------T---PYQVDRLAKEFHIYM 393 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~------------~---~~~~~~ll~~~gI~i 393 (435)
-+...++.+++-+.|.+.|+++.... .+......|.++. +.+ + ...+...+.++||.+
T Consensus 323 -----~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~ 396 (447)
T PRK06917 323 -----KHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIG-VEFVADKKTKQPFSKSQAVASELISVAAKNGLLL 396 (447)
T ss_pred -----HCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEE-EEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEE
Confidence 12344556666666666665542100 1122333333332 211 0 122333335689999
Q ss_pred eCC--------C---cEEec-cCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 394 TQD--------G---RISMA-GVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 394 ~pg--------g---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
.+. | |++.. ..+++++++++++|.++++++.++
T Consensus 397 ~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~ 441 (447)
T PRK06917 397 YPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQK 441 (447)
T ss_pred EecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 864 2 67643 248999999999999999876543
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=124.54 Aligned_cols=284 Identities=12% Similarity=0.043 Sum_probs=166.9
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEec-CCchhHHHHHHHHHHHhCCCCEEEEcCCCCh-hhHHHHhhC--CCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA-LSGTGACRLFAEFQRRFHPESHIYFPDPTWS-NHHNIWRDA--QIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t-~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~-~~~~~~~~~--g~~~ 167 (435)
.-+.+.|+.+++++.... +.+|+ ++ .+||.+++.+ +..++.+ +.+.+..-.|. .+...++.. +.++
T Consensus 41 ~~~~~~r~~l~~l~~~~~-----~~~v~--f~~gs~T~a~~~~--~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~ 110 (361)
T TIGR01366 41 NLVGRVREGLAELFSLPD-----GYEVI--LGNGGATAFWDAA--TFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEP 110 (361)
T ss_pred HHHHHHHHHHHHHhCCCC-----CceEE--EECCchhHHHHHH--HHhcccc-cccEEecCHHHHHHHHHHHhhhccCCc
Confidence 335677888888874321 23565 65 5699999998 6665533 33334344443 223333431 2356
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
..++. +++..++. .+. +++++|++++.+|.||+..+.++ | ++++|+++|+|.+ +.+...+.+
T Consensus 111 ~~~~~--~~~~~~~~-----~~~---~~~~lV~~~h~et~tG~~~pi~~---I---~~~~g~~~iVDav-qs~g~~~id- 172 (361)
T TIGR01366 111 IIVTA--DPGSAPEP-----QAD---PGVDVIAWAHNETSTGVAVPVRR---P---EGSDDALVVIDAT-SGAGGLPVD- 172 (361)
T ss_pred eEEec--CCCCCCCC-----ccC---CCCCEEEEcccCCccceeccccc---c---cccCCCeEEEEcC-ccccCCCCC-
Confidence 66654 22222332 233 67899999999999999998764 3 5889999999999 555443322
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH---------H---HHHhh-----ccccCC
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ---------I---QQIAR-----AMYGSP 310 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~---------l---~~~~~-----~~~~~~ 310 (435)
+. +-++++.|..|.+|.+|- ++.++ . +++.++++... . ..... ...+.+
T Consensus 173 ----v~------~~D~~~~s~~K~lg~~~G-l~~~~--~-s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp 238 (361)
T TIGR01366 173 ----IA------ETDVYYFAPQKNFASDGG-LWLAI--M-SPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTP 238 (361)
T ss_pred ----HH------HCCEEEEEchhhcCCCCc-eEEEE--E-CHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCc
Confidence 11 136788999999997741 33333 2 67633322100 0 00000 112233
Q ss_pred ChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCc-ccc---ccCcceeEec-CCCHHHHHH
Q 013839 311 PVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNW-EHI---TNQLGMFCFS-GLTPYQVDR 384 (435)
Q Consensus 311 ~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~---~~~~g~~~~~-~~~~~~~~~ 384 (435)
+.....++.++++.-. +. .++...+++++..+++++.+++.+....+ ... .+..+.+.+. +++.+.+..
T Consensus 239 ~i~~i~~l~~al~~l~-----~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~ 313 (361)
T TIGR01366 239 AIATLALLAEQIDWMN-----GNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDIDAATVAK 313 (361)
T ss_pred hHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccCHHHHHH
Confidence 3333334444443211 12 25667788999999999999988731111 100 0111233443 456666755
Q ss_pred HhhhccEEEeCCC--------cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 385 LAKEFHIYMTQDG--------RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 385 ll~~~gI~i~pgg--------Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.|+++||.+.++. |+|... .+.+++++++++|++++++
T Consensus 314 ~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 314 ILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 5577899998761 999754 4889999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=124.32 Aligned_cols=322 Identities=15% Similarity=0.066 Sum_probs=182.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..+|+..|.-...-|. -.++.++++.+++.+. ....|.. ....++.+.++++. +. +.+. +++
T Consensus 21 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~-~~~~~la~~l~~~~-~~-------~~v~--~~~ 88 (364)
T PRK04013 21 SQGRRYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVAGPMFEH-EEKEEMLEELSKWV-NY-------EYVY--MGN 88 (364)
T ss_pred CCCCEEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCccCCcCC-HHHHHHHHHHHhhc-CC-------CEEE--EeC
Confidence 35678999977742111221 1233444444444321 0112322 22345555555553 21 3566 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh--------CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD--------AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~--------~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+|++|++++..+.......++|+....+|.+....... .+..+..... ....+ .|++.+++.+. +++
T Consensus 89 SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~-~~~~~-~d~~~l~~~i~---~~~ 163 (364)
T PRK04013 89 SGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGF-KHIPF-NDVEAAKEAIT---KET 163 (364)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCc-EEecC-CCHHHHHHHhc---CCc
Confidence 99999999976665543338999999999776433222 1111111000 00011 26788888886 567
Q ss_pred EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 197 FFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++...+...|... +++.++++.++|++||+++|.||+..++..+. .+....+ +...++ -+++|.+| .
T Consensus 164 aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~----~~a~~~~-gv~PDi---v~~gK~lg-g 234 (364)
T PRK04013 164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK----FLAIEHY-KVEPDI---VTMGKGIG-N 234 (364)
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc----hhHHHhc-CCCCCE---EEeccccc-C
Confidence 8888877776666654 66789999999999999999999988773321 2233322 222223 34699998 6
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|..+|.++. +.+ +. ......+.+.++++..++.+.|+.-. ++ +.+++.++. +. .+..
T Consensus 235 G~P~~a~~~---~~~----~~----~~~~~~T~~gnp~~~aaa~a~l~~i~--~~--~l~~~~~~~-------l~-~l~~ 291 (364)
T PRK04013 235 GVPVSLTLT---NFD----VE----RGKHGSTFGGNPLACKAVAVTLRILR--RE--RLVEKAGEK-------FI-EIKG 291 (364)
T ss_pred CceeEEEEe---ccc----cc----CCCcCCCCCcCHHHHHHHHHHHHHHH--hc--cHHHHHHHH-------HH-Hhcc
Confidence 888888863 544 31 11223456677777777666664211 00 111111111 11 2211
Q ss_pred hCCCCCccccccCcceeEecCCC--HHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 356 LGSSLNWEHITNQLGMFCFSGLT--PYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ .+...... |.+.-+.+. ...+...+.++|+.+.+.| ||... ..+++++++++++|.+++++
T Consensus 292 -~---~v~~vRG~-Gl~~gve~~~~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~ 360 (364)
T PRK04013 292 -E---RVVTTRGR-GLMIGIVLKKPVGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVIND 360 (364)
T ss_pred -C---cceeeeeC-cEEEEEEeCCcHHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence 1 11222233 334433332 3334333456899998865 77643 24899999999999999865
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=122.63 Aligned_cols=339 Identities=11% Similarity=0.026 Sum_probs=187.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...||+..|.....-| ...+++++++.+++.... ...|.. ....+|-+.+++.+.. .+.+. +++
T Consensus 44 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~~~~~-~~~~~lae~l~~~~~~-------~~~v~--f~~ 112 (451)
T PRK07678 44 IQGNRYLDGMSGLWCVNVG-YGRKELAEAAYEQLKTLSYFPLTQSH-EPAIKLAEKLNEWLGG-------EYVIF--FSN 112 (451)
T ss_pred CCCCEEEEccccHHhhcCC-CCCHHHHHHHHHHHHhcCccccccCC-HHHHHHHHHHHHhCCC-------CCEEE--EeC
Confidence 4678899988774211122 122344444444444221 111211 1123444555444311 23566 899
Q ss_pred CchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHhh-CCC------------CeeeeeecCCCC--CC----
Q 013839 125 SGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWRD-AQI------------PERTYHYYDPDS--KS---- 179 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~--~~---- 179 (435)
+|++|++.+..+..... +| .+|+...-+|.+....... .|. .+..++..+... ++
T Consensus 113 sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (451)
T PRK07678 113 SGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESED 192 (451)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChH
Confidence 99999999976554432 23 6788888888776533221 111 112222110000 00
Q ss_pred -cC---hHhHHHHhh-cCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 180 -LD---FAALMDDIK-NAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 180 -~d---~e~l~~~i~-~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
.| ++.+++.+. +.+++..+|++...+.-.|... +++.++++.++|++||+++|.||+..+|+..+ ..+...
T Consensus 193 ~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~ 269 (451)
T PRK07678 193 IYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG---KAFGFM 269 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc---hhHHHH
Confidence 01 233555664 2345678888876665567764 67789999999999999999999988886543 122333
Q ss_pred HhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH------hhccccCCChhHHHHHHHHhCChh
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI------ARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
.+ +....++ +++|.+| .| +.+|.+++ +++ +.+.+... ....+.+.++++..++.+.|+.-.
T Consensus 270 ~~-gv~PDiv---t~gK~lg-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~ 337 (451)
T PRK07678 270 NY-GVKPDII---TMAKGIT-SAYLPLSATAV---KKE----IYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIME 337 (451)
T ss_pred hc-CCCCCEE---Eeecccc-cCCcceeEEEE---cHH----HHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHH
Confidence 32 2222222 5799998 56 68888864 777 66665431 123455667777777666664211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCCCCccccccCcceeEecCC----------CH---HHHHHHhhhc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEK----LGSSLNWEHITNQLGMFCFSGL----------TP---YQVDRLAKEF 389 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~g~~~~~~~----------~~---~~~~~ll~~~ 389 (435)
+ +...++.++.-++|.+.|++ ++. +......|.++. +.+ +. ..+...+.++
T Consensus 338 ------~--~~~~~~~~~~g~~l~~~l~~~~~~~~~---v~~vrg~Gl~~~-i~~~~~~~~~~~~~~~~a~~i~~~l~~~ 405 (451)
T PRK07678 338 ------N--ENLIERSAQLGELLLEQLKEELGEHPL---VGDIRGKGLLVG-IELVNDKETKEPADNDKVASVVAACKEK 405 (451)
T ss_pred ------h--CCHHHHHHHHHHHHHHHHHHHHhcCCC---EEEEEeeceEEE-EEEecCCcccCcCchHHHHHHHHHHHHC
Confidence 1 12334455555555555543 332 112333333332 211 11 2333334568
Q ss_pred cEEEeCC-------C---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 390 HIYMTQD-------G---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 390 gI~i~pg-------g---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
||.+.+. + ||+.. ..++++|++++++|.++++++
T Consensus 406 Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 406 GLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9998753 2 56542 248999999999999998754
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=130.94 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=136.7
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
+.|...=-|..++.++|.+.. .. +++|+|.++..+ +++++.|||+|+++..++......+.+.|++++++
T Consensus 64 p~G~I~eAe~~aA~~fGAd~t------~f--lvnGsT~g~~a~--i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi 133 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGADKT------FF--LVNGSTSGNQAM--IMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYI 133 (417)
T ss_dssp TBTHHHHHHHHHHHHHTESEE------EE--ESSHHHHHHHHH--HHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEE
T ss_pred CccHHHHHHHHHHHhcCCCeE------EE--EecCchHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEe
Confidence 456554445555555676533 33 689999999888 88999999999999999999989999999999998
Q ss_pred eecCCCC---CCcCh-----HhHHHHhhcCCCCcE--EEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeeccCC
Q 013839 171 HYYDPDS---KSLDF-----AALMDDIKNAPDSSF--FLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMAYQ 238 (435)
Q Consensus 171 ~~~~~~~---~~~d~-----e~l~~~i~~~~~~~~--~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Deay~ 238 (435)
+..+++. .++++ +.+++++++++.... ++++. ||| |++. ++++|+++|++++++|++||||.
T Consensus 134 ~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt---~PTY~Gv~~---di~~I~~~~h~~~~~llvDEAhG 207 (417)
T PF01276_consen 134 PPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLT---SPTYYGVCY---DIKEIAEICHKHGIPLLVDEAHG 207 (417)
T ss_dssp EEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEE---SS-TTSEEE----HHHHHHHHCCTECEEEEE-TT-
T ss_pred cCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEe---CCCCCeEEE---CHHHHHHHhcccCCEEEEEcccc
Confidence 6642221 35566 999999998754322 35553 556 5554 57799999999999999999974
Q ss_pred C-ccCCCCcccHHHHHHhhh--cCCeEEEEecccccccccCCcccEEEEEecCh-hHHHHHHHHHHHHhhccccCCChhH
Q 013839 239 G-FASGDLDKDAQAIRIFLE--DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS-KQAAAIRSQIQQIARAMYGSPPVHG 314 (435)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (435)
. +.|.+...+ .+..-++ ....++++.|..|++ +++.-+.++.+..+. -..+++.+.+..++ +.+|+.+.
T Consensus 208 ah~~F~~lp~~--a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~~---TTSPSY~l 280 (417)
T PF01276_consen 208 AHFGFHPLPRS--ALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMHQ---TTSPSYPL 280 (417)
T ss_dssp TTGGCSGGGTT--CSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHHS----SS--HHH
T ss_pred ccccCCCCccc--hhhccCccccccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHHc---CCChHHHH
Confidence 4 333321111 1111111 123679999999997 566655444334332 21233434333332 22344332
Q ss_pred HHHHHHHhCChhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 315 ILLVATILSDPNLKSLW-IDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 315 q~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
...+..+... + ..+-++..++..++.+.+++.+++
T Consensus 281 mASlD~a~~~------m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 281 MASLDVARAQ------MEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp HHHHHHHHHH------HSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 2222221110 1 123344555555666666666643
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-12 Score=120.93 Aligned_cols=287 Identities=14% Similarity=0.082 Sum_probs=171.2
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD 174 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 174 (435)
.+.++.+++.+ +.. ++++.+.+|+|||+|+..+.....-..++.+|+++.-.+......++..|..+..+|.
T Consensus 69 ~~v~~~ia~ll-g~~-----~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~-- 140 (374)
T PLN03032 69 VGVLDWFARLW-ELE-----KDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPT-- 140 (374)
T ss_pred HHHHHHHHHHh-CCC-----CccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeee--
Confidence 34455555555 332 3455345899999999776432222235568888888888888888999999888888
Q ss_pred CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-----ceeeeeccCCCccCCCCcccH
Q 013839 175 PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG-----HFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 175 ~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~-----~~vi~Deay~~~~~~~~~~~~ 249 (435)
..++.+|+++|++++.+...++.+++++..+|+||.+-+ +++|.++|+++| +++.+|.+|..+... .....
T Consensus 141 d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p-~~~~~ 216 (374)
T PLN03032 141 LPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMP-FVSRA 216 (374)
T ss_pred CCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhh-ccCCC
Confidence 345789999999999854335778888889999999855 558889999986 589999997554321 00000
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-----ccCCC-----hhHHHHHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-----YGSPP-----VHGILLVA 319 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~-----~~~q~~~~ 319 (435)
+.+ .+. ..-+.+..|.+|.++.| ..+|.+.+ .++ ..+.+.....+. +...+ .+..++..
T Consensus 217 ~~~-~~~--~~vDSis~s~HK~~g~P-~g~G~ll~---r~~----~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l 285 (374)
T PLN03032 217 PEV-TFR--KPIGSVSVSGHKFLGCP-MPCGVALT---RKK----HVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTL 285 (374)
T ss_pred ccc-CCC--cCCcEEEECcccccCCC-cCeEEEEE---Ech----hhHhhccCCcccCCCCCcccCCCchHHHHHHHHHH
Confidence 011 111 12345677899998733 44777753 344 333332211111 11111 12222222
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCC-c
Q 013839 320 TILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDG-R 398 (435)
Q Consensus 320 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg-R 398 (435)
..+.. +..++..++..+..+++.+.|++.+.. ....|......|..-..+. +.++..+...+.. |
T Consensus 286 ~~~G~--------~g~~~~~~~~~~~a~~l~~~l~~~~~~---~~~~p~~~~V~f~~~~~~~---~~~~w~l~~~~~~~h 351 (374)
T PLN03032 286 RRKGY--------RGIKRDVQHCMRNAHYLKDRLTEAGLT---CRLNELSSTVVFERPMDEA---FIKKWQLACEGDIAH 351 (374)
T ss_pred HHhCH--------HHHHHHHHHHHHHHHHHHHHHHhCCCc---EEECCCceEEEEcCCCcHh---HhheeeecccCCEEE
Confidence 22221 455667777788888899999887642 2344554444443333222 2223333433333 8
Q ss_pred EEecc-CCCCcHHHHHHHHHH
Q 013839 399 ISMAG-VTTGNVNYLANAIHE 418 (435)
Q Consensus 399 is~~~-~~~e~i~~~~~~l~~ 418 (435)
+.+.. .+.+.++++++.|++
T Consensus 352 i~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 352 VVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEECCCCCHHHHHHHHHHHhc
Confidence 87654 355667777776654
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=132.37 Aligned_cols=176 Identities=13% Similarity=0.047 Sum_probs=118.9
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
+.|...--|..++.++|.+.+ .. +++|+|.++..+ +++.+.+||+|+++..++......+.+.|++++++
T Consensus 203 p~G~I~eAq~~aA~~fgA~~t------~F--lvNGST~gn~a~--i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl 272 (755)
T PRK15029 203 HTGAFGESEKYAARVFGADRS------WS--VVVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYM 272 (755)
T ss_pred CCcHHHHHHHHHHHHhCCCcE------EE--EeCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 356655556666666677533 33 699999998877 88899999999999999999999999999999998
Q ss_pred eecCCCC----CCcC-----hHhHHHHhhcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeee
Q 013839 171 HYYDPDS----KSLD-----FAALMDDIKNAPD-------SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFD 234 (435)
Q Consensus 171 ~~~~~~~----~~~d-----~e~l~~~i~~~~~-------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~D 234 (435)
+..- +. .+++ ++.+++++.+++. +++++++++|+. -|++. ++++|+++|+++++++++|
T Consensus 273 ~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~---di~~I~~~~h~~~~~llvD 347 (755)
T PRK15029 273 VPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCY---NAKEAQDLLEKTSDRLHFD 347 (755)
T ss_pred cccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceee---CHHHHHHHHHhcCCeEEEE
Confidence 5321 22 3445 8999999987642 222677744322 26665 4569999999999999999
Q ss_pred ccCCC-ccCCCCcccHHHHHHhh-h-cCCeEEEEecccccccccCCcccEEE
Q 013839 235 MAYQG-FASGDLDKDAQAIRIFL-E-DEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 235 eay~~-~~~~~~~~~~~~~~~~~-~-~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
|||.. +.|.+.-+...++..-. . .+..++++.|.+|++ +++.-|.++
T Consensus 348 EAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~L 397 (755)
T PRK15029 348 EAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYI 397 (755)
T ss_pred CccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhh
Confidence 99744 44432110001110000 1 223459999999997 455545443
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-11 Score=119.27 Aligned_cols=345 Identities=12% Similarity=0.076 Sum_probs=187.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC-CC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL-ES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.-...-|.. .+++++++.+++...... .+ .......++-+.+++.+.... .+++. ++
T Consensus 39 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~-----~~~v~--f~ 110 (449)
T PRK07481 39 IDGKKLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG-----MRRVF--FS 110 (449)
T ss_pred CCCCEEEECchhHHhhcCCCC-CHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC-----CCEEE--Ec
Confidence 456788998777421112212 233444444554422111 01 111112234444444331111 23666 89
Q ss_pred CCchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCC--CCC-cC
Q 013839 124 LSGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPD--SKS-LD 181 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~--~~~-~d 181 (435)
++|++|++.+..+..... +| .+|+...-+|.+.......... .+..++..+.. .+. .|
T Consensus 111 ~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d 190 (449)
T PRK07481 111 SGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQD 190 (449)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCC
Confidence 999999999976554431 34 5788888888776432211110 11222210000 011 13
Q ss_pred hHh--------HHHHhh-cCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 182 FAA--------LMDDIK-NAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 182 ~e~--------l~~~i~-~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
.+. +++.+. ..+++..+|++...+.-.|... +++.++++.++|++||+++|.||+..+|+..+ ..+.
T Consensus 191 ~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a 267 (449)
T PRK07481 191 PEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG---SWFG 267 (449)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc---hhhH
Confidence 333 344443 2235678888877666677754 67779999999999999999999998886543 1222
Q ss_pred HHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~ 323 (435)
...+ +...+++ +++|.++ .| +.+|.+++ +++ +.+.+... ....+.+.++++..++.+.|+
T Consensus 268 ~~~~-gv~PDiv---~~gKgl~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~ 335 (449)
T PRK07481 268 SRGW-GVKPDIM---CLAKGIT-SGYVPLGATMV---NAR----IADAFEANADFGGAIMHGYTYSGHPVACAAALATLD 335 (449)
T ss_pred hhhc-CCCCCEE---EEeeccc-CCCcCceEEEE---cHH----HHHHHhccCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2222 2222233 3699987 67 47888864 777 66666431 123355667776666666664
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CccccccCcceeEecCC----------C--H---HHHHHHhh
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL-NWEHITNQLGMFCFSGL----------T--P---YQVDRLAK 387 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~----------~--~---~~~~~ll~ 387 (435)
.-. + +...++.++.-+.+.+.|+++-... .+......|. +.-+.+ + . ..+...+.
T Consensus 336 ~l~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl-m~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (449)
T PRK07481 336 IVV------R--EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGL-MLALDLVADKATREPIDPSKGYANAVADVAR 406 (449)
T ss_pred HHH------h--hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecce-EEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence 211 1 2334455555566666665542100 0122333333 332211 1 1 22333335
Q ss_pred hccEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 388 EFHIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 388 ~~gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
++||.+.+.| ||+.. ..+++++++++++|.++++++
T Consensus 407 ~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 407 ENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred hCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6899999876 77743 248999999999999998754
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=129.14 Aligned_cols=197 Identities=16% Similarity=0.076 Sum_probs=136.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEE
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYF 148 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv 148 (435)
+.+.+.+++.+...+.. .|+...-..++.+.+++.+ +.. ..+ ++.+|+.|..++ +..++.|++.|++
T Consensus 7 ~~~~m~~a~~~a~~gd~-~Yg~D~~~~~l~~~i~~l~-g~e-------~a~--f~~sGT~An~~a--l~~~~~~~~~vi~ 73 (290)
T PF01212_consen 7 PTPAMLEAMAAANVGDD-AYGEDPTTARLEERIAELF-GKE-------AAL--FVPSGTMANQLA--LRAHLRPGESVIC 73 (290)
T ss_dssp S-HHEEHHHHHTTSB-C-CTTSSHHHHHHHHHHHHHH-TSS-------EEE--EESSHHHHHHHH--HHHHHHTTEEEEE
T ss_pred CCHHHHHHHHccccCCc-ccCCChhHHHHHHHHHHHc-CCC-------EEE--EeCCCChHHHHH--HHHHHhcCCceec
Confidence 33444555555554534 5998888889999999988 442 233 789999999988 6667789999999
Q ss_pred cCCCChhh---HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 013839 149 PDPTWSNH---HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFFLLHPSAHNPT-GVDPTEEQWREIS 221 (435)
Q Consensus 149 ~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~v~~~~p~NPt-G~~~~~~~l~~i~ 221 (435)
..+++... .......|++++.++. ++++.+|+++|++.+.+ +..++++|.+.+|+|-. |.+++.+++++|.
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~--~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~ 151 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGAKLIPLPS--DDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS 151 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTCEEEEEBE--CTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred cccceeeeeccchhhHhcCcEEEECCC--cccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence 99876433 2233568999998876 33368999999999986 33568999999999874 8999999999999
Q ss_pred HHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChh
Q 013839 222 YQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSK 290 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~ 290 (435)
++|++||+.++.|.+-....-. ....++..+. ..-+.+..|++|.+++++ |-+++ . +++
T Consensus 152 ~~a~~~gl~lhmDGARl~~a~~---~~~~~~~e~~--~~~D~v~~~~tK~~g~~~---Gavl~-~-~~~ 210 (290)
T PF01212_consen 152 ELAREHGLPLHMDGARLANAAA---ALGVSLAEIA--AGADSVSFGGTKNGGAPG---GAVLA-G-NKE 210 (290)
T ss_dssp HHHHHHT-EEEEEETTHHHHHC---HHHHHHHHHH--TTSSEEEEETTSTT-SSS---EEEEE-E-SHH
T ss_pred HHHHhCceEEEEehhhHHHhhh---cccccHHHHh--hhCCEEEEEEEccccccc---ceEEE-e-chH
Confidence 9999999999999994211110 0112333333 234566778999988776 66652 3 777
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-11 Score=119.66 Aligned_cols=279 Identities=11% Similarity=0.032 Sum_probs=162.4
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHhhC-CC------------CeeeeeecCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWRDA-QI------------PERTYHYYDPD 176 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~ 176 (435)
+.+. ++++|++|++.+..+..... +| .+|+....+|.+........ |. .+..+|..+..
T Consensus 130 ~~v~--f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~ 207 (472)
T PRK08742 130 SKVF--YADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAY 207 (472)
T ss_pred CEEE--EeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCcc
Confidence 3677 89999999999976655441 33 68899998887765332211 11 11222221100
Q ss_pred --CCCc--------ChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 177 --SKSL--------DFAALMDDIKNAPDSSFFLLHPS-AHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 177 --~~~~--------d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
.++. +++.+++.+.+.+.+..+|++.. .++-.|.. .+++.++++.++|++||+++|.||+..+|+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG 287 (472)
T PRK08742 208 LAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG 287 (472)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc
Confidence 0111 25666777764445677777765 46666774 578889999999999999999999998887543
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHH------hhccccCCChhHHHH
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQI------ARAMYGSPPVHGILL 317 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~ 317 (435)
..+....+ +....+++ ++|.++ .|. .+|.+++ +++ +.+.+... ....+.+.++++..+
T Consensus 288 ---~~~a~e~~-gv~PDiv~---~gKgl~-gG~~Plaav~~---~~e----i~~~~~~~~~~~~~~h~~T~~gnpl~~Aa 352 (472)
T PRK08742 288 ---TLFACEQA-GVMPDLLC---LSKGLT-GGFLPLSAVLA---TQQ----LYDAFLDDSRERAFLHSHSYTGNPLACAA 352 (472)
T ss_pred ---cchHHHhc-CCCCCEEE---Eccccc-CCCCCcceeec---cHH----HHHHhhccCccCccCcCCCCCccHHHHHH
Confidence 12333222 22223333 599998 674 7888864 777 66655321 112345566776666
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhCCCCCccccccCcceeEecCC----------CH-----
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL---EKLGSSLNWEHITNQLGMFCFSGL----------TP----- 379 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~~~~~~~g~~~~~~~----------~~----- 379 (435)
+.+.|+--. + +...++.++.-+++.+.+ ++++. +......|-++. +.+ ..
T Consensus 353 a~a~L~~i~------~--~~l~~~~~~~g~~l~~~~~~~~~~~~---i~dvRG~Gl~~g-iel~~~~~~~~~~~~~~~~~ 420 (472)
T PRK08742 353 ALATLDIFA------D--DDVIARNQPTAARMTQLAAQIGEHPH---VADVRQAGMVVA-FELTRGGNKRTPFPPAARVG 420 (472)
T ss_pred HHHHHHHHH------H--CCHHHHHHHHHHHHHHHHHHHhcCCC---eeeEeccceEEE-EEeccCccccccCCchhHHH
Confidence 666654211 1 122233333333333333 33321 222333333333 211 00
Q ss_pred HHHHHHhhhccEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 380 YQVDRLAKEFHIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 380 ~~~~~ll~~~gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+...+.++||.+.+.| ||... ..+++++++++++|.+++++.
T Consensus 421 ~~~~~~~~~~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 421 LHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred HHHHHHHHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 123233346899999876 66642 248999999999999999753
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-11 Score=118.66 Aligned_cols=332 Identities=14% Similarity=0.033 Sum_probs=186.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...||+..|.-...-|. ..+.+++++.+++..+....+ +.....++.|.+++.. + .+.+. ++++|
T Consensus 72 ~DG~~yiD~~~g~g~~~lGh-~~p~i~~Av~~q~~~~~~~~~-~~~~~~~lAe~l~~~~-~-------~~~v~--F~nSG 139 (453)
T PRK07046 72 VDGHRYDDFCLGDTGAMFGH-SPAPVARALAEQARRGLTTML-PSEDAAWVGEELARRF-G-------LPYWQ--VATTA 139 (453)
T ss_pred CCCCEEEEecccccccccCC-CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHh-C-------CCEEE--EECCH
Confidence 46788999877752111121 123444445555544322222 2233345555555543 2 24677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-h-CCCCe------eeee--ecC---CCCCCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-D-AQIPE------RTYH--YYD---PDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-~g~~~------~~v~--~~~---~~~~~~d~e~l~~~i~~~~ 193 (435)
++|...+..+.......++|+...-+|.++..... . .+.+. ..++ ..+ .-.| -|++.+++.+..
T Consensus 140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~-- 216 (453)
T PRK07046 140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALAD-- 216 (453)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCC--
Confidence 99999997666555455889998988988743211 1 01000 0000 000 0001 278899888852
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
.+..+|++.....-.|.+. +++.++++.++|++||+++|.||+.. |..+-. . ....+ +... +++ +++|.+
T Consensus 217 ~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~G--g--~~~~~-gv~P-Di~--t~gK~l 287 (453)
T PRK07046 217 GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPG--G--YTRAH-GLEP-DFL--VVGKPI 287 (453)
T ss_pred CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCc--c--hhHHh-CCCc-cce--eehhhh
Confidence 4567777765555556554 56789999999999999999999965 432210 0 11111 2212 232 489999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
| .|+.+|.+++ .++ +.+.+.... ...+.+.++++..++.+.|+.-. + ....++..
T Consensus 288 g-gG~Pi~av~g---~~~----i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~------~--~~~~~~~~ 351 (453)
T PRK07046 288 A-GGVPCAVYGF---SAE----LAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVM------T--EAAYAHML 351 (453)
T ss_pred c-CCCcceeeee---hHH----HHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHh------c--ccHHHHHH
Confidence 8 7899998864 777 766665311 12345566776666666654211 0 11233333
Q ss_pred HHHHHHHHHH----HhhCCCCCccccccCcceeEec--C--C----------CHH----HHHHHhhhccEEEeCCC---c
Q 013839 344 RKRTTLRQNL----EKLGSSLNWEHITNQLGMFCFS--G--L----------TPY----QVDRLAKEFHIYMTQDG---R 398 (435)
Q Consensus 344 ~~~~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~--~--~----------~~~----~~~~ll~~~gI~i~pgg---R 398 (435)
+.-+.|.+.| ++.+.+ +. ....+.++.+. . . +.+ +...+ .++||.+.|.+ +
T Consensus 352 ~~g~~l~~~L~~l~~~~~~~--~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~~~~~~ 427 (453)
T PRK07046 352 ALAARLAAGLRAVIARHGLP--WH-VTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYL-LNRGVLITPFHNMML 427 (453)
T ss_pred HHHHHHHHHHHHHHHhCCCC--eE-EEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHH-HHCCCEEecccCcEE
Confidence 3444444444 344432 22 22333333221 1 0 111 22344 45899998865 6
Q ss_pred EEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 399 ISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 399 is~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
++.. .++++++++++++.++++++
T Consensus 428 ~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 428 VCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred EeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 7764 59999999999999998754
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=121.38 Aligned_cols=176 Identities=11% Similarity=0.069 Sum_probs=116.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh------HHHHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH------HNIWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~------~~~~~~~g~~~ 167 (435)
+..+++.+++++... . ++++++|+.|+.++ + ..+.+||+|++.+..+..| ...++..|+++
T Consensus 124 ~~~le~~lA~l~gae--------~--alvv~sg~aAi~l~--l-~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~ 190 (454)
T TIGR00474 124 YSHVEGLLCELTGAE--------D--ALVVNNNAAAVLLA--L-NTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKL 190 (454)
T ss_pred HHHHHHHHHHHhCCC--------c--EEEECCHHHHHHHH--H-HHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEE
Confidence 367888888887332 2 22578888888776 4 4578999999998664222 24567789999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC--
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG-- 243 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~-- 243 (435)
+.++.. + ..++++++++++ ++|+++++.+++||+ |.. ...++++|+++|++||+++++|.....+...
T Consensus 191 ~~v~~~--~--~~~l~dle~aI~---~~T~lv~~~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~ 262 (454)
T TIGR00474 191 VEVGTT--N--RTHLKDYEDAIT---ENTALLLKVHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSR 262 (454)
T ss_pred EEeCCC--C--CCCHHHHHHhcC---cCCEEEEEEccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchh
Confidence 888652 1 357899999997 789999999999996 531 2345779999999999999999762222110
Q ss_pred -CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 244 -DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
+.. ..+.+....+ .+-++++.|.+|.+|-| ..|++++ .++ +++.+++
T Consensus 263 ~gl~-~~p~~~~~~~-~GaDiv~fSg~K~LgGp--~~G~i~g---~~~----~i~~l~~ 310 (454)
T TIGR00474 263 YGLP-DEPTVQEVIA-AGVDLVTFSGDKLLGGP--QAGIIVG---KKE----LIERLKK 310 (454)
T ss_pred ccCC-CCcccccHhH-cCCCEEEecCccccCCC--eEEEEEE---CHH----HHHhhhh
Confidence 000 0111111111 23468899999998644 3688864 677 5555443
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-11 Score=119.03 Aligned_cols=342 Identities=12% Similarity=0.070 Sum_probs=187.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC----CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE----FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.++...||+..|.....-| ...+++++++.+++.... ...+. .....+|.+.+++.+.+ + -+++. +
T Consensus 47 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~~~~~~~~~-~~~~~~lae~L~~~~p~-~-----~~~v~--f 116 (456)
T PRK07480 47 SEGNKILDGMAGLWCVNVG-YGRKELADAAARQMRELPYYNTFFKTT-HPPAIELAAKLAEVAPP-G-----FNHVF--F 116 (456)
T ss_pred CCCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCcccccccC-CHHHHHHHHHHHHhCCC-C-----cCEEE--E
Confidence 4668899998774211112 123334444444544221 11121 12223444444444311 1 23666 8
Q ss_pred cCCchhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHH-hhCCC------------CeeeeeecCCCCC----C
Q 013839 123 ALSGTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIW-RDAQI------------PERTYHYYDPDSK----S 179 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~-~~~g~------------~~~~v~~~~~~~~----~ 179 (435)
+++|++|++.+..+.... . +| .+|+...-+|.+..... ...|. .+..++. +..+ .
T Consensus 117 ~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~ 194 (456)
T PRK07480 117 TNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQ--PYWFGEGGD 194 (456)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCC--CcccccccC
Confidence 999999999997655443 1 33 56888888887653221 11110 0111111 0000 0
Q ss_pred cC--------hHhHHHHhhc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 180 LD--------FAALMDDIKN-APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 180 ~d--------~e~l~~~i~~-~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
.+ .+.+++.+.+ .+++..+|++...+.-.|... +.+.+++|.++|++||+++|.||+..+|+..+ ..
T Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~ 271 (456)
T PRK07480 195 MTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG---EW 271 (456)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---ch
Confidence 11 2556555532 335677888877666677755 66779999999999999999999988886443 12
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHH----HhhccccCCChhHHHHHHHHhCC
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQ----IARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
+....+ +.... +-+++|.++ .|. .+|.+++ +++ +.+.+.. .....+.+.++++..++.+.|+.
T Consensus 272 ~a~~~~-gv~PD---iv~~gK~l~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 339 (456)
T PRK07480 272 FGSQHF-GIKPD---LMTIAKGLT-SGYIPMGAVGV---GDR----VAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339 (456)
T ss_pred hhhhhc-CCCCC---eeeeehhhc-cCCccceEEEE---cHH----HHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 222222 22222 235799988 674 7888864 777 6665521 12234566777777777777642
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC-CCCCccccccCcceeEecCC-----------C----HHHHHHHhh
Q 013839 325 PNLKSLWIDEVKIMADRI-QRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCFSGL-----------T----PYQVDRLAK 387 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~-----------~----~~~~~~ll~ 387 (435)
-. + ....++. ++.-++|.+.|+++. .+ .+......|.++. +.+ + ...+...+.
T Consensus 340 l~------~--~~l~~~~~~~~g~~l~~~l~~l~~~~-~i~~vrG~Glm~g-ie~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (456)
T PRK07480 340 LR------D--EGIVERVRDDTGPYLQKRLRELADHP-LVGEVRGVGLVGA-IELVKDKATRERFEAGGGVGTICRDHCF 409 (456)
T ss_pred HH------h--CCHHHHHHHHHHHHHHHHHHHhhcCC-CeeeEEeecceEE-EEEeccccccccCcchhhHHHHHHHHHH
Confidence 11 1 1233344 244455555554431 11 1122333343333 211 0 123433345
Q ss_pred hccEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 388 EFHIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 388 ~~gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
++||.+.+.| ||+.. ..+++++++++++|.+++.++..
T Consensus 410 ~~Gll~~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 410 ANGLIMRAVGDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred HCCcEEeecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899998765 67653 23899999999999999987643
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-11 Score=119.66 Aligned_cols=345 Identities=12% Similarity=0.029 Sum_probs=185.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcccc-CCCeeeEec-C
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVK-EGRSAGVQA-L 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~v~~~~t-~ 124 (435)
.++...||+..|.-...-| ...+.+++++.+++...... ....-..+.+..+++.+...-...+. .+.+. ++ +
T Consensus 60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~~--~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~--f~~~ 134 (464)
T PRK06938 60 VEGRQFIDCLAGAGTLALG-HNHPVVIEAIQQVLADELPL--HTLDLTTPVKDQFVQDLFASLPEAFAREAKIQ--FCGP 134 (464)
T ss_pred CCCCEEEEccCCccccccC-CCCHHHHHHHHHHHHhhhcc--cccccCCHHHHHHHHHHHHhCcccccccceEE--EeCC
Confidence 4678899987775211112 12334445455555322111 00000112333444444221100000 02343 44 7
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCC------------CeeeeeecCCC--CCC--------cC
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQI------------PERTYHYYDPD--SKS--------LD 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~--~~~--------~d 181 (435)
+|++|++.+..+........+|+...-+|.+....... .|. .+..+|..+.. .++ .+
T Consensus 135 SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 214 (464)
T PRK06938 135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214 (464)
T ss_pred CcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHH
Confidence 99999999976655443447888888888776533221 110 12223321110 001 13
Q ss_pred hHhHHHHhhcCC---CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 182 FAALMDDIKNAP---DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 182 ~e~l~~~i~~~~---~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++.+++.+.+.. +...+|++...+.-.|.+. +++.++++.++|++||+++|.||+..+|+-.+ ..+....+ +
T Consensus 215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~e~~-g 290 (464)
T PRK06938 215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG---KMFAFEHA-G 290 (464)
T ss_pred HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---HHHHHHhc-C
Confidence 567777776321 2567777766666567755 68889999999999999999999998886543 12233222 2
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
....++ +++|.+| .|..+|.+++ .++ + +.+.......+.+.++++..++.+.|+.-. + +.
T Consensus 291 v~PDiv---~~gKglg-gG~PlsAv~~---~~~----~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~------~--~~ 350 (464)
T PRK06938 291 IIPDVV---VLSKAIG-GSLPLAVVVY---REW----L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK------E--HR 350 (464)
T ss_pred CCCCEE---Eeecccc-CCCceEEEee---hhH----h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH------H--hH
Confidence 222333 3599998 7899988863 544 3 333222223455667777766666664211 1 12
Q ss_pred HHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC---------------C---HHHH-HHHhhhccEEEeCC
Q 013839 338 MADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL---------------T---PYQV-DRLAKEFHIYMTQD 396 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~---------------~---~~~~-~~ll~~~gI~i~pg 396 (435)
..++.++.-++|.+.|+++- .+ .+......| ++.-+.+ + ...+ ..+ .++||.+.++
T Consensus 351 l~~~~~~~G~~l~~~L~~l~~~~~-~i~~VrG~G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gll~~~~ 427 (464)
T PRK06938 351 LAEHAAAMGERLREHLRQLQRDYP-QLGDVRGRG-LMLGVEIVDPQGEPDALGHPPANGELASLIQREC-LRRGLILELG 427 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-Ceeeeeccc-eEEEEEeccCcccccccccCCccHHHHHHHHHHH-HHCCeEEeec
Confidence 33445555555555555431 11 112223333 3332211 1 1223 444 4689999874
Q ss_pred C------cEEe-ccCCCCcHHHHHHHHHHHHHhh
Q 013839 397 G------RISM-AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 g------Ris~-~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
| ||.. ...++++++++++++.+++.+.
T Consensus 428 g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 428 GRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred CCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 3 6653 2348999999999999998764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-12 Score=108.82 Aligned_cols=288 Identities=14% Similarity=0.095 Sum_probs=182.8
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY 173 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 173 (435)
+..+.+.+++++ +.+ .+- +|+|+.+|-+.+ +.+++.+||.|++....+....-+++.+|.++..||..
T Consensus 63 I~~F~~dlaeFl-g~D-------~~R--~t~GARe~Kfav--Mhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~t 130 (382)
T COG1103 63 IKDFLEDLAEFL-GMD-------EVR--VTAGAREAKFAV--MHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNT 130 (382)
T ss_pred HHHHHHHHHHHh-CCc-------eee--ecccchhhHHHH--HHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCC
Confidence 457888899998 554 444 799999999988 88899999999999987665666778999999999976
Q ss_pred CCCCCCcChHhHHHHhhcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 174 DPDSKSLDFAALMDDIKNA----PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
....+.+++|...+.|++. .+.+.+.++.++. |...+..|.++++++|++++++++...+|..-.-.
T Consensus 131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~D---g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmp------ 201 (382)
T COG1103 131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVD---GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMP------ 201 (382)
T ss_pred CCCceEecHHHHHHHHHHHHhccCCCceEEEEeccC---CCcCCchhhHHHHHHHHHcCCceEeecceeecccc------
Confidence 6667899998887777652 2346777775554 44455667789999999999999999998643321
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-h------ccccCCChhHHHHHHHHh
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-R------AMYGSPPVHGILLVATIL 322 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-~------~~~~~~~~~~q~~~~~~l 322 (435)
.+. ..-..+++++|-.|.+++. -.+|.+.. ..+ ..+.+.+.. + .-.+++..-+.-.++..-
T Consensus 202 vs~----ke~g~DFiVgSGHKsmAAs-~PiGvl~~---~eE----~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmA 269 (382)
T COG1103 202 VSG----KEIGADFIVGSGHKSMAAS-APIGVLAM---SEE----WAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMA 269 (382)
T ss_pred ccc----cccCCCEEEecCccchhcc-CCeeEEee---hhH----HHHHHHhhcccccccceeeeecccccCchHHHHHh
Confidence 111 1124578899999999844 46888853 666 433333222 1 112233322222222222
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc--ccCc-ce--eEecCC---C------HHHHHHHhhh
Q 013839 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI--TNQL-GM--FCFSGL---T------PYQVDRLAKE 388 (435)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~-g~--~~~~~~---~------~~~~~~ll~~ 388 (435)
+-+... +.+ ..++.--++.+++.+.|+++|. +... .|.. -. |-...+ + .-++..-|++
T Consensus 270 SfP~V~----eRV-krWdeEv~kaR~fv~elEkigg---~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~ 341 (382)
T COG1103 270 SFPHVV----ERV-KRWDEEVEKARWFVAELEKIGG---VKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKK 341 (382)
T ss_pred cCHHHH----HHH-HHHHHHHHHHHHHHHHHHHhhh---HHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHh
Confidence 222110 111 1222223355677788887763 1111 1111 11 111122 1 1134444577
Q ss_pred ccEEEe-CCC----cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 389 FHIYMT-QDG----RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 389 ~gI~i~-pgg----Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
.||.-. ||- .+|+.+++.|++++.++++++++++
T Consensus 342 RgI~GI~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 342 RGIHGIQPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred cCccccccCceeEEEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 787654 443 7788788999999999999998875
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-11 Score=117.72 Aligned_cols=348 Identities=9% Similarity=0.035 Sum_probs=189.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..||+..|.....-| .-.+++++++.+++... ....+. ....+.+..+++.+...-.. .-+.+. ++++
T Consensus 48 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p~--~~~~v~--f~~s 120 (466)
T PRK07036 48 ADGRRYLDGIGGMWCVNVG-YGREEMADAIADQARRLPYYTPFG--DMTNAPAAELAAKLAELAPG--DLNHVF--LTTG 120 (466)
T ss_pred CCCCEEEECcccHHhhcCC-CCCHHHHHHHHHHHHhCccccccc--ccCCHHHHHHHHHHHHhCCC--CcCEEE--EeCC
Confidence 4678899988774211112 11233444444444321 011111 01123344455554221100 023666 8999
Q ss_pred chhHHHHHHHHHHHh----C-CC-CEEEEcCCCChhhHHHHhhC-CC------------CeeeeeecCC--CCCCcC---
Q 013839 126 GTGACRLFAEFQRRF----H-PE-SHIYFPDPTWSNHHNIWRDA-QI------------PERTYHYYDP--DSKSLD--- 181 (435)
Q Consensus 126 g~~a~~~~~~~~~~~----~-~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~~d--- 181 (435)
|++|++.+..+.... . +| .+|+....+|.+....+... |- .+..++..+. ...+.+
T Consensus 121 GseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 200 (466)
T PRK07036 121 GSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAA 200 (466)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHH
Confidence 999999997655433 1 22 67888888887764332211 10 1222221100 001111
Q ss_pred -----hHhHHHHhhc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH
Q 013839 182 -----FAALMDDIKN-APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI 254 (435)
Q Consensus 182 -----~e~l~~~i~~-~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 254 (435)
.+.+++.+.+ .+++..+|++...+...|... +++.+++|.++|++||+++|.||+..+|+-.+ ..+....
T Consensus 201 ~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~~ 277 (466)
T PRK07036 201 FCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG---HFFASEA 277 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc---hhhhhhh
Confidence 2345555543 335677888877776677755 77889999999999999999999988885543 1222221
Q ss_pred hhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCChh
Q 013839 255 FLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 255 ~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
..+.... +-+++|.++ .| ..+|.+++ +++ +.+.+... ....+.+.++++..++.+.|+.-.
T Consensus 278 ~~gv~PD---ivt~gK~l~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~ 346 (466)
T PRK07036 278 VFGIQPD---IITFAKGLT-SGYQPLGAVII---SER----LLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIME 346 (466)
T ss_pred hcCCCCC---EEEEccccc-cCccccEEEEE---cHH----HHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1122222 235799998 67 47888864 777 66655421 112355566777666666664211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------------C---HHHHHHHhhhccE
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------------T---PYQVDRLAKEFHI 391 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------------~---~~~~~~ll~~~gI 391 (435)
+ ....++.++..++|.+.|+.+.--..+......|. +..+.+ + ...+...+.++||
T Consensus 347 ------~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl-~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv 417 (466)
T PRK07036 347 ------R--EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHL-MACVECVADKGSKALLPEDIAIGQRIDRHCQERGL 417 (466)
T ss_pred ------h--CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeece-EEEEEEccCccccCCCCchhHHHHHHHHHHHHCCc
Confidence 1 23445555556666666654311001122333333 332322 0 1233333456899
Q ss_pred EEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 392 YMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 392 ~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+.| |++.. ..+++++++++++|.+++++..
T Consensus 418 l~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 418 LVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 998865 66632 2489999999999999987764
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=126.11 Aligned_cols=174 Identities=14% Similarity=0.125 Sum_probs=115.5
Q ss_pred CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-HHhhCCCCe
Q 013839 89 ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-IWRDAQIPE 167 (435)
Q Consensus 89 ~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~ 167 (435)
-...|...--|..|+.++|.+.+ .. +++|+|.++..+ +++.+.+||+|+++..++..... .+.+.|+++
T Consensus 170 ~~~eG~i~eAq~~AA~~fgAd~t------yF--lvNGTS~gn~a~--i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~P 239 (720)
T PRK13578 170 LIHEGAAKDAQKHAAKVFNADKT------YF--VLNGTSASNKVV--TNALLTPGDLVLFDRNNHKSNHHGALIQAGATP 239 (720)
T ss_pred CCCChHHHHHHHHHHHHhCCCce------EE--EeCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeE
Confidence 33456655556666666677533 33 689999998888 88899999999999999988777 488999999
Q ss_pred eeeeecCCCC----CCcChHh-----HHHHhhcCCCC-------cEEEEeCCCCCCC--CCCCCHHHHHHHHHH-HHhcC
Q 013839 168 RTYHYYDPDS----KSLDFAA-----LMDDIKNAPDS-------SFFLLHPSAHNPT--GVDPTEEQWREISYQ-FKVKG 228 (435)
Q Consensus 168 ~~v~~~~~~~----~~~d~e~-----l~~~i~~~~~~-------~~~v~~~~p~NPt--G~~~~~~~l~~i~~~-~~~~~ 228 (435)
++++.. -+. ++++.++ +++++.+.++. .+++++. ||| |++++. ++|++. ++.++
T Consensus 240 VYl~P~-~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit---~pTYdG~~ydi---~~I~~~~~h~~~ 312 (720)
T PRK13578 240 VYLETA-RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQ---LGTYDGTIYNA---RQVVDKIGHLCD 312 (720)
T ss_pred EEeecc-ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEE---CCCCcceeecH---HHHHHHhhccCC
Confidence 998542 222 3456555 88888765222 4777774 555 777654 578887 67778
Q ss_pred ceeeeeccCCCc-cCCCCcccHHHHH-HhhhcCCeEEEEecccccccccCCcccEE
Q 013839 229 HFPFFDMAYQGF-ASGDLDKDAQAIR-IFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 229 ~~vi~Deay~~~-~~~~~~~~~~~~~-~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+|++||||..+ .|.+.-.+.+... .......-++++.|.+|.+ +++--+.+
T Consensus 313 -~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~ 365 (720)
T PRK13578 313 -YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQ 365 (720)
T ss_pred -cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhh
Confidence 99999997543 3433211122221 1111123469999999997 44544433
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-11 Score=116.38 Aligned_cols=341 Identities=12% Similarity=0.059 Sum_probs=181.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC--CCC-CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF--LES-ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.+++..||+..|.-...-|. -.+++++++.+++..... ..+ .......+|-+.+++.+... -+.+. ++
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~--f~ 121 (460)
T PRK12403 51 NDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGH------YSHAI--YT 121 (460)
T ss_pred CCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC------cCEEE--Ee
Confidence 35678999877742111222 223444444455432111 001 11122234444554443111 13566 89
Q ss_pred CCchhHHHHHHHHHHHh-----CCCC-EEEEcCCCChhhHH-HHhhCCCC-----------eeeeeecCC--CCCCc---
Q 013839 124 LSGTGACRLFAEFQRRF-----HPES-HIYFPDPTWSNHHN-IWRDAQIP-----------ERTYHYYDP--DSKSL--- 180 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~gd-~Vlv~~p~y~~~~~-~~~~~g~~-----------~~~v~~~~~--~~~~~--- 180 (435)
++|++|++.+..+.... .+++ .|+....+|.+... .+...|.. +..+|.... ..+.+
T Consensus 122 ~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 201 (460)
T PRK12403 122 NSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPA 201 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChH
Confidence 99999999997655443 2333 34555667766532 22222211 122221000 00011
Q ss_pred -----ChHhHHHHhhc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 181 -----DFAALMDDIKN-APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 181 -----d~e~l~~~i~~-~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+.+++++.+.+ .+++..+|++.....-.|... +++.+++|.++|++||+++|.||+..+|+..+ ..+...
T Consensus 202 ~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~e 278 (460)
T PRK12403 202 EFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG---EWFAHE 278 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhhhh
Confidence 13456555542 234567777776666667754 67889999999999999999999987776543 112222
Q ss_pred HhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHh----hccccCCChhHHHHHHHHhCChhhH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIA----RAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
.+ +... +|+ +++|.+| .|. .+|.+++ .++ +.+.+.... ...+.+.++++..++.+.|+.-.
T Consensus 279 ~~-gv~P-Div--~~gK~lg-gG~~Piga~v~---~~~----i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~-- 344 (460)
T PRK12403 279 HF-GFEP-DTL--SIAKGLT-SGYVPMGGLVL---SKR----IAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALR-- 344 (460)
T ss_pred hc-CCCC-CeE--EEccccc-ccccceEEEEE---CHH----HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHH--
Confidence 22 2222 233 3899998 674 7887753 677 666554211 12345566777666666664211
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHh----hCCCCCccccccCcceeEecCC----------CH--H---HHHHHhhh
Q 013839 329 SLWIDEVKIMADRIQ-RKRTTLRQNLEK----LGSSLNWEHITNQLGMFCFSGL----------TP--Y---QVDRLAKE 388 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~----~~~~~~~~~~~~~~g~~~~~~~----------~~--~---~~~~ll~~ 388 (435)
+ +...++.+ ++-+++.+.|++ .+. +......|. +.-+.+ +. + .+...+.+
T Consensus 345 ----~--~~l~~~~~~~~g~~l~~~L~~l~~~~~~---i~~vrG~Gl-~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (460)
T PRK12403 345 ----D--EGVVTRVKDDTGPYLQRCLREVFGDHPL---VGEVQGAGL-VAALQFAEDKATRKRFANENDLAWRCRTIGFE 414 (460)
T ss_pred ----h--ccHHHHHHHHHHHHHHHHHHHHHhcCCC---EEeEeecce-EEEEEEccCccccccccchhHHHHHHHHHHHh
Confidence 1 12334443 444555555543 321 122333333 332211 10 1 12222346
Q ss_pred ccEEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 389 FHIYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 389 ~gI~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+|+.+.+.| |++.. ..++++++++++.|.++++++
T Consensus 415 ~Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 415 EGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred CCEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 899998754 56543 238999999999999999765
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-11 Score=130.47 Aligned_cols=342 Identities=14% Similarity=0.069 Sum_probs=188.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++...+|+..|.. . -| -..+.+++++.+++... ....|.. ....++-+.+++.+.+ . -+.+. ++++
T Consensus 621 ~dG~~ylD~~~g~~-~-lG-H~hp~v~~Ai~~q~~~l~~~~~~~~-~~~~~lAe~L~~~~p~-~-----~~~v~--f~nS 688 (1013)
T PRK06148 621 NRGRAYLDCFNNVC-H-VG-HAHPRVVAAAARQAARLNTNTRYLH-DAIVAYAERLTATLPD-G-----LTVAF--FVNS 688 (1013)
T ss_pred CCCCEEEEcccChh-h-cC-CCCHHHHHHHHHHHhhcCCcCCcCC-HHHHHHHHHHHHhCCC-C-----cCEEE--EeCC
Confidence 35677888877752 2 12 11233444444444321 1122321 2223444444444311 1 13566 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CC-------C-----CeeeeeecCC--CCCCc-C-------h
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQ-------I-----PERTYHYYDP--DSKSL-D-------F 182 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g-------~-----~~~~v~~~~~--~~~~~-d-------~ 182 (435)
|++|++++..+........+|+....+|.+....... .+ . .+..++..+. ..+.. + .
T Consensus 689 GsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 768 (1013)
T PRK06148 689 GSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFA 768 (1013)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHH
Confidence 9999999976665554457889888888766432111 11 0 1111111000 00110 1 1
Q ss_pred HhHHHHhh---cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc
Q 013839 183 AALMDDIK---NAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED 258 (435)
Q Consensus 183 e~l~~~i~---~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 258 (435)
+.+++.+. ..+....+|++.....-.|.+ .+++.++++.++|++||+++|.||+..+|+-.+. ..+....+ +.
T Consensus 769 ~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~--~~~a~e~~-gv 845 (1013)
T PRK06148 769 ESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS--HWWAFETQ-GV 845 (1013)
T ss_pred HHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC--cchhhhhc-CC
Confidence 34554443 233457788776655555654 4788899999999999999999999888865431 12222222 22
Q ss_pred CCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-hccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
.. + +-+++|.+| .|..+|.+++ .++ +.+.+..-. ...+.+.++++..++.+.|+.-. + +.
T Consensus 846 ~P-D--ivt~gK~lg-gG~Plgav~~---~~e----i~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~------~--e~ 906 (1013)
T PRK06148 846 VP-D--IVTMGKPIG-NGHPMGAVVT---TRE----IADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIE------D--ED 906 (1013)
T ss_pred Cc-c--eeeeccccc-CCcceEEEEE---cHH----HHhhccCCCccccCCCCCHHHHHHHHHHHHHHh------h--cc
Confidence 12 2 245799998 7899999864 777 766654321 13455667777777666664211 1 13
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-CccccccCcceeEecCC---------C---HHHHHHHhhhccEEEeCCC------c
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSL-NWEHITNQLGMFCFSGL---------T---PYQVDRLAKEFHIYMTQDG------R 398 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~---------~---~~~~~~ll~~~gI~i~pgg------R 398 (435)
..++.++.-++|.+.|+++.... .+......| +++-+.+ + ...+...+.++||.+.+.| |
T Consensus 907 l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~G-l~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr 985 (1013)
T PRK06148 907 LQRNALEIGNYLLAGLRELQDRFDIIGDVRGMG-LFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLK 985 (1013)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeeec-eEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEE
Confidence 44555566666666665542100 011222333 3332211 1 1223333346899998754 6
Q ss_pred EEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 399 ISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 399 is~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
|... ..+++++++++++|.+++.+.
T Consensus 986 ~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 986 IRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred EeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 6543 248999999999999998753
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-11 Score=118.35 Aligned_cols=347 Identities=13% Similarity=0.062 Sum_probs=182.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...||+..|.....-| -..+++++++.+++......... .-..+.+..+++.+...-........+. ..+++|
T Consensus 55 ~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~q~~~~~~~~~~--~~~~~~~~~lAe~L~~~~p~~~~~~~~~-f~~~SG 130 (459)
T PRK06931 55 VEGNQYLDCLAGAGTLALG-HNHPDVLQSIQDVLTSGLPLHTL--DLTTPLKDAFSEYLLSLLPGQGKEYCLQ-FTGPSG 130 (459)
T ss_pred CCCCEEEEcccchhhccCC-CCCHHHHHHHHHHHhhhcccccc--ccCCHHHHHHHHHHHHhCCCccccceEE-EeCCCc
Confidence 3678899998885211122 22234445555555422111110 0112344445555422111000001222 145899
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C------------CCeeeeeecCCCC--CC----cChHhH--
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q------------IPERTYHYYDPDS--KS----LDFAAL-- 185 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~--~~----~d~e~l-- 185 (435)
++|.+.+..+.......++|+...-+|.+........ + ..+..+|..+... +. -+.+.+
T Consensus 131 sEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (459)
T PRK06931 131 ADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTY 210 (459)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHH
Confidence 9999999766655545578998998898775443321 1 0122222211100 00 012222
Q ss_pred --HHHhhc---CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 186 --MDDIKN---APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 186 --~~~i~~---~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.+.+ .+++..++++...+.-.|... +++.++++.++|++||+++|.||+..+|+-.+ ..+....+ +..
T Consensus 211 ~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG---~~~a~~~~-gv~ 286 (459)
T PRK06931 211 YFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG---KMFAFEHA-GIE 286 (459)
T ss_pred HHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc---hHHHhhhc-CCC
Confidence 333321 224567777766555567654 78889999999999999999999998886543 12333222 222
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
..+ -+++|.++ .|..+|.++ + .++ + +.+.......+.+.++++..++.+.|+.-. + +...
T Consensus 287 PDi---vt~gK~l~-gG~Pi~av~--~-~~~----~-~~~~~~~~~~T~~gnpla~aaala~L~~l~------~--~~l~ 346 (459)
T PRK06931 287 PDI---IVMSKAVG-GGLPLAVLG--I-KKE----F-DAWQPGGHTGTFRGNQLAMATGLTTLKILK------E--ENLA 346 (459)
T ss_pred CCE---EEeccccc-CCcceeeee--e-HHH----H-hhccCCCCCCCCCCCHHHHHHHHHHHHHHH------h--CCHH
Confidence 223 34699998 788888764 2 443 2 333222223455677777777666664211 1 1233
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC---------------CH---HHHHHHhhhccEEEeCCC--
Q 013839 340 DRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL---------------TP---YQVDRLAKEFHIYMTQDG-- 397 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~---------------~~---~~~~~ll~~~gI~i~pgg-- 397 (435)
++.++.-++|.+.|+++. .+ .+......|.++. +.+ +. ..+...+.++||.+.+.|
T Consensus 347 ~~~~~~G~~l~~~L~~l~~~~~-~i~~vrG~Glm~g-iel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~ 424 (459)
T PRK06931 347 QNAAERGEWLKAQLAELQKRYP-CIGNVRGRGLMIG-IEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRN 424 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeEeEecCceEEE-EEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCC
Confidence 444444555555554431 11 1222333333322 211 11 123333346899997653
Q ss_pred ----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 398 ----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 ----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+..+ ..+++++++++++|.+++++.
T Consensus 425 ~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 455 (459)
T PRK06931 425 GNVVRLLPPLLITQAECEEFIDRFEQALLAA 455 (459)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHHH
Confidence 65543 248999999999999998764
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-12 Score=127.09 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=114.7
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeee
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERT 169 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 169 (435)
...|...--|..++.+++.+.+ .. +++|+|.++..+ +++.+.+||.|+++..++......+.+.|+++++
T Consensus 192 ~~~G~i~eAe~~AA~~fgAd~t------yf--vvNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVY 261 (714)
T PRK15400 192 DHSGPHKEAEEYIARVFNADRS------YM--VTNGTSTANKIV--GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIY 261 (714)
T ss_pred CCChHHHHHHHHHHHHhCCCcE------EE--EeCchHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence 3456655556666666677533 33 689999998888 8888999999999999998888899999999999
Q ss_pred eeecCCCC----CCcC-----hHhHHHHhhcCCCC--cEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeecc
Q 013839 170 YHYYDPDS----KSLD-----FAALMDDIKNAPDS--SFFLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 170 v~~~~~~~----~~~d-----~e~l~~~i~~~~~~--~~~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Dea 236 (435)
++.. -+. ++++ .+.+++++.+.+.. +..+++. ||| |++++. ++|.+.|+.++ +++|||
T Consensus 262 l~P~-rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit---~pTYdG~~yd~---~~I~~~~~~~~--ilvDEA 332 (714)
T PRK15400 262 FRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT---NSTYDGLLYNT---DFIKKTLDVKS--IHFDSA 332 (714)
T ss_pred eccc-ccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEE---CCCCccEecCH---HHHHHHhCCCC--EEEEcc
Confidence 8542 222 2345 89999999876432 2256664 555 777765 47777787776 689999
Q ss_pred CCCc-cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 237 YQGF-ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 237 y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
|..+ .|.+.-++..++....+..+.++++.|.+|.+ +++.-+
T Consensus 333 wgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQa 375 (714)
T PRK15400 333 WVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQA 375 (714)
T ss_pred chhhhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHH
Confidence 8554 34332112233332222224569999999997 344433
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-11 Score=129.54 Aligned_cols=340 Identities=10% Similarity=0.023 Sum_probs=185.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC-CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL-ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
++...+|+..|.. .. | -..+++++++.+++...... .|. .....+|.+.+++.+-. . .+.+. ++++|
T Consensus 583 dG~~ylD~~~~~~-~l-G-h~hp~v~~Ai~~q~~~l~~~~~~~-~~~~~elae~L~~~~p~-~-----~~~v~--f~~SG 650 (972)
T PRK06149 583 AGRSYLDMVNNVT-VL-G-HGHPRLAAAAARQWSLLNTNSRFH-YAAVAEFSERLAALAPD-G-----LDTVF--LVNSG 650 (972)
T ss_pred CCCEEEECCCCcc-cc-C-CCCHHHHHHHHHHHHhcccccccc-CHHHHHHHHHHHHhCCC-C-----cCEEE--EeCCc
Confidence 5678888887652 21 1 12234444444555422111 121 11233455555544411 1 23566 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C-------C------CeeeeeecCCC--CCC-cC-----hHh
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q-------I------PERTYHYYDPD--SKS-LD-----FAA 184 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g-------~------~~~~v~~~~~~--~~~-~d-----~e~ 184 (435)
++|++.+..+........+|+..+-+|.+........ + . .+..++..+.. .+. .+ .++
T Consensus 651 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~ 730 (972)
T PRK06149 651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRD 730 (972)
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHH
Confidence 9999999765554544477888888887654221100 0 0 01122210000 011 11 234
Q ss_pred HHHHhh---cCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 185 LMDDIK---NAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 185 l~~~i~---~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+++.++ +.+.+..+|++.......|. ..+++.++++.++|++||+++|.||+..+|+-.+ ...+....+ +...
T Consensus 731 ~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG--~~~~a~e~~-gv~P 807 (972)
T PRK06149 731 VVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG--HYFWGFEQQ-GVVP 807 (972)
T ss_pred HHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC--ccchhhhhc-CCCC
Confidence 444332 23345677777654444454 4578889999999999999999999987876543 112233222 2222
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
.++ +++|.+| .|..+|.+++ +++ +.+.+.... ...+.+.++++..++.+.|+.-. + +...
T Consensus 808 Div---t~gK~lg-~G~Pl~av~~---~~~----i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~------~--e~l~ 868 (972)
T PRK06149 808 DII---TMAKGMG-NGHPLGAVIT---RRE----IAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR------E--EKLQ 868 (972)
T ss_pred CEE---Eeccccc-CCeeeEEEEE---cHH----HHhhhccCCcccCCCCCCHHHHHHHHHHHHHHH------h--cCHH
Confidence 232 6899998 7888999864 777 766665311 12234566776666666664211 1 2344
Q ss_pred HHHHHHHHHHHHHHHhhCCCC-CccccccCcceeEecCC---------C---HHHHHHHhhhccEEEeCCC------cEE
Q 013839 340 DRIQRKRTTLRQNLEKLGSSL-NWEHITNQLGMFCFSGL---------T---PYQVDRLAKEFHIYMTQDG------RIS 400 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~---------~---~~~~~~ll~~~gI~i~pgg------Ris 400 (435)
++.++.-++|.+.|+++.... .+......| ++.-+.+ + ...+...+.++||.+.+.| ||.
T Consensus 869 ~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~G-l~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~ 947 (972)
T PRK06149 869 ENARRVGDHLKARLEALADRHPLIGAVHGMG-LYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIK 947 (972)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEeecc-eEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEE
Confidence 555555566666665542100 112233333 3332211 1 1233333456899999875 444
Q ss_pred ec-cCCCCcHHHHHHHHHHHHHh
Q 013839 401 MA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 401 ~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
.. ..+++++++++++|.+++.+
T Consensus 948 Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 948 PPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHh
Confidence 32 24899999999999999864
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-11 Score=116.99 Aligned_cols=280 Identities=13% Similarity=0.104 Sum_probs=157.3
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhC------CC------CEEEEcCCCChhhHHHHhh-CCCCe-----------eeee
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFH------PE------SHIYFPDPTWSNHHNIWRD-AQIPE-----------RTYH 171 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~------~g------d~Vlv~~p~y~~~~~~~~~-~g~~~-----------~~v~ 171 (435)
+++. ++++|++|++.+.++..... .| .+|+....+|.+....... .|... ..++
T Consensus 111 ~~v~--f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 188 (443)
T PRK08297 111 PHLF--FVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID 188 (443)
T ss_pred CEEE--EeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccC
Confidence 4677 99999999999976654331 12 5799899888777543322 12100 0011
Q ss_pred ecC------CCC-------CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccC
Q 013839 172 YYD------PDS-------KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAY 237 (435)
Q Consensus 172 ~~~------~~~-------~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay 237 (435)
... ..+ ..-+++++++.+.+.+++..++++...+.-.|.. .+++.+++|.++|++||+++|.||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~ 268 (443)
T PRK08297 189 NPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQ 268 (443)
T ss_pred CCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 000 000 0013455667776555677888887665556665 67889999999999999999999999
Q ss_pred CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH-HHH-HHhhccccCCChhHH
Q 013839 238 QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS-QIQ-QIARAMYGSPPVHGI 315 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~~~q 315 (435)
.+|+..+ ..+....+ +....++ +++|.+++ | |.+. ..+ ...+.. .+. ......+.+.+.++.
T Consensus 269 tGfGRtG---~~~a~~~~-gv~PDiv---~~gK~l~~-~---a~l~----~~~-i~~~~~~~~~~~~~~~~T~~gnpl~~ 332 (443)
T PRK08297 269 TGVGLTG---TAWAYQQL-GVRPDIV---AFGKKTQV-C---GIMA----GRR-VDEVEDNVFAVSSRINSTWGGNLVDM 332 (443)
T ss_pred hccCccc---hHHHHHhc-CCCCCEE---Eecccccc-c---ceec----chH-HHHhhhhhccCccccCCCCCccHHHH
Confidence 8886543 12222222 2222233 47998742 2 3332 333 111111 111 011234556677776
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC-C---H-HHHHHHhhh
Q 013839 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL-T---P-YQVDRLAKE 388 (435)
Q Consensus 316 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~-~---~-~~~~~ll~~ 388 (435)
.++.+.|+.-. + ....++.++..+.+.+.|+++. .+......... |.+..+.+ + . .+...+ .+
T Consensus 333 aaa~a~L~~l~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~l-~~ 402 (443)
T PRK08297 333 VRARRILEVIE------E--DGLVENAARQGEYLLARLEELAAEFPAVVSNVRGR-GLMCAFDLPTTADRDEVIRRL-WE 402 (443)
T ss_pred HHHHHHHHHHH------h--cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeecc-ceEEEEEecCHHHHHHHHHHH-HH
Confidence 66666664211 1 1334445555555555555432 11011122333 44444433 2 2 234555 46
Q ss_pred ccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 389 FHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 389 ~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+||.+.|.| ||+.+ ..+++++++++++|.++++++
T Consensus 403 ~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 403 EGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 899999865 67532 248999999999999988754
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-11 Score=121.40 Aligned_cols=174 Identities=8% Similarity=0.009 Sum_probs=113.5
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeee
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERT 169 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 169 (435)
...|...--|..++.+++.+.+ .. +++|+|.++..+ +++.+.+||+|+++..++......+.+.|+++++
T Consensus 192 ~~~G~i~eAe~~aA~~fgAd~t------yf--vvNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVY 261 (713)
T PRK15399 192 DHTGPHLEAEEYIARTFGAEQS------YI--VTNGTSTSNKIV--GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIW 261 (713)
T ss_pred CCChHHHHHHHHHHHHhCCCcE------EE--EeCChHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEE
Confidence 3456555555666666677533 33 689999998888 8888999999999999998888899999999999
Q ss_pred eeecCCCC----CCcCh-----HhHHHHhhcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee-eeeccC
Q 013839 170 YHYYDPDS----KSLDF-----AALMDDIKNAPD--SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP-FFDMAY 237 (435)
Q Consensus 170 v~~~~~~~----~~~d~-----e~l~~~i~~~~~--~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v-i~Deay 237 (435)
++.. -+. ++++. +.+++++.+.+. +++++++.+| +=-|++++.+ +|.+.| |+.+ ++||||
T Consensus 262 l~P~-~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~---~I~~~~---g~~~ilvDEAh 333 (713)
T PRK15399 262 LKPT-RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTD---WIKQTL---DVPSIHFDSAW 333 (713)
T ss_pred eccc-ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHH---HHHHHh---CCCEEEEeccc
Confidence 8542 122 34555 899999987642 2356666444 2238887666 555555 5555 699998
Q ss_pred CCc-cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 238 QGF-ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
..+ .|.+...+..++.........++++.|.+|.+ +++.-+.++
T Consensus 334 gah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~i 378 (713)
T PRK15399 334 VPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLI 378 (713)
T ss_pred hhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheee
Confidence 543 34332122223321111223456789999997 456545444
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=114.56 Aligned_cols=346 Identities=11% Similarity=0.075 Sum_probs=185.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-| ...+.+++++.+++...... ....-..+....+++.+...-.. ..+++. ++++|
T Consensus 27 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~av~~ql~~~~~~--~~~~~~~~~~~~lae~L~~~~p~--~~~~v~--f~~sG 99 (443)
T PRK07483 27 ATGKRYLDASGGAAVSCLG-HSHPRVIAAIHAQIDRLAYA--HTSFFTTEPAEALADRLVAAAPA--GLEHVY--FVSGG 99 (443)
T ss_pred CCCCEEEEcCccHhhhccC-CCCHHHHHHHHHHHHhccCc--cccccCCHHHHHHHHHHHHhCCC--CCCEEE--EcCCc
Confidence 4678899998874211112 12233444444444322100 00000112334444444221100 024677 89999
Q ss_pred hhHHHHHHHHHHHhC-----CC-CEEEEcCCCChhhHHHHhh-CCC------------CeeeeeecCC-CCC--Cc----
Q 013839 127 TGACRLFAEFQRRFH-----PE-SHIYFPDPTWSNHHNIWRD-AQI------------PERTYHYYDP-DSK--SL---- 180 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~-~~~--~~---- 180 (435)
++|++.+..+..... +| .+|+....+|.+....... .|- .+..++.... ++. ..
T Consensus 100 sEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (443)
T PRK07483 100 SEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEA 179 (443)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHH
Confidence 999999986655541 33 5788888888776432211 110 1111221000 000 00
Q ss_pred ----ChHhHHHHhhc-CCCCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 181 ----DFAALMDDIKN-APDSSFFLLHPSAHN-PTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 181 ----d~e~l~~~i~~-~~~~~~~v~~~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
.++++++.+.+ .+++..+|++...+. -.|. ..+++.++++.++|++||+++|.||+..+|+..+ ..+...
T Consensus 180 ~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~~ 256 (443)
T PRK07483 180 YGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG---TLFACE 256 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc---HHHHHh
Confidence 12566665542 234567777765543 2354 4578889999999999999999999988886543 123332
Q ss_pred HhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHH----hhccccCCChhHHHHHHHHhCChhhH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQI----ARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
.+ +....++ +++|.++ .|. .+|.+++ +++ +.+.+... ....+.+.++++..++.+.|+.-.
T Consensus 257 ~~-gv~PDiv---~~gK~l~-gG~~Pi~av~~---~~~----i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~-- 322 (443)
T PRK07483 257 ED-GVAPDLV---TIAKGLG-AGYQPIGAVLA---SDR----IYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIA-- 322 (443)
T ss_pred hc-CCCCCee---eehhhhc-cCccccEEEEE---cHH----HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHH--
Confidence 22 2222233 3699998 785 8888864 777 66655431 112455667777666666664211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC----------C-----HHHHHHHhhhccE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL----------T-----PYQVDRLAKEFHI 391 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~----------~-----~~~~~~ll~~~gI 391 (435)
+ ....++.++.-++|.+.|+++ ..+ .+......|-++. +.+ + .+.+...+.++||
T Consensus 323 ----~--~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vRG~Glm~g-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl 394 (443)
T PRK07483 323 ----E--DGLLANVRARGEQLRARLRERLGQHP-HVGDIRGRGLFVG-VELVADRATKAPFDPALKLHARIKREAMARGL 394 (443)
T ss_pred ----h--cCHHHHHHHHHHHHHHHHHHHHhcCC-CeeeEeecccEEE-EEEeecccccCCCCchhhHHHHHHHHHHHCCc
Confidence 1 234445555556666666543 111 1122233333222 211 1 1233333356899
Q ss_pred EEeCC--------C---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 392 YMTQD--------G---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 392 ~i~pg--------g---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+. | ||... ..+++++++++++|.+++.+..
T Consensus 395 l~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 395 MVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred EEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99753 2 66532 3489999999999999997644
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-10 Score=115.10 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=192.0
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCC------eeeEecCCchhHHHHHHHHHH--
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGR------SAGVQALSGTGACRLFAEFQR-- 138 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~------v~~~~t~gg~~a~~~~~~~~~-- 138 (435)
+.+...+.+.+....+.....|....+..++-+.+.+|+...-+. ++. -.+.+|.||++|+..++....
T Consensus 93 ~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~---p~~~~~~~~~gG~~tsggs~anl~al~~AR~~ 169 (490)
T PLN02880 93 SSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNL---PEQFLSTGNGGGVIQGTASEAVLVVLLAARDR 169 (490)
T ss_pred CcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCC---CchhhcCCCCceEEcCccHHHHHHHHHHHHHH
Confidence 334455555555544433444554455667777777777322211 111 124579999999866642221
Q ss_pred HhC-------CCCEEEEcCCCChhhHHHHhhCCCC---eeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCC
Q 013839 139 RFH-------PESHIYFPDPTWSNHHNIWRDAQIP---ERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAH 205 (435)
Q Consensus 139 ~~~-------~gd~Vlv~~p~y~~~~~~~~~~g~~---~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~ 205 (435)
.+. +.-.|++.+-++......+...|+. ++.||+.+..++.+|++.|++++.+. ...+.+|+-+...
T Consensus 170 ~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGT 249 (490)
T PLN02880 170 VLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGT 249 (490)
T ss_pred HHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCC
Confidence 111 1124556777788888888999984 67788732346789999999999742 3346777777888
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.+||.+-+ +++|.++|++||+|+.+|.+|.++.... +..+.. .+...-+-+..+++|.+. ....+|.+.+
T Consensus 250 T~~GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~-----~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llv 320 (490)
T PLN02880 250 TSSTAVDP---LLELGKIAKSNGMWFHVDAAYAGSACIC-----PEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWV 320 (490)
T ss_pred CcCcccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhC-----HHHHHHhcCchhcCEEEECchhhcC-CCccEEEEEE
Confidence 89998755 5699999999999999999987764321 122211 122234577889999986 5577787763
Q ss_pred EecChhHHHHHHHHHHHHhhccc---------c--------CCC---hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMY---------G--------SPP---VHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~---------~--------~~~---~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
.+... +...+.....+.. . ... .+..++....+.. +.+.++.++..+
T Consensus 321 --r~~~~---l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~--------~g~~~~i~~~~~ 387 (490)
T PLN02880 321 --KDRNA---LIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV--------ENLQSYIRNHIK 387 (490)
T ss_pred --eCHHH---HHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCH--------HHHHHHHHHHHH
Confidence 34331 2222211110000 0 000 1111111122221 334455555557
Q ss_pred HHHHHHHHHHhhCCCCCccccc-cCcceeEec--C--CC--------HHHHHHHhhhccEEEeCC---C----cEEeccC
Q 013839 345 KRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFS--G--LT--------PYQVDRLAKEFHIYMTQD---G----RISMAGV 404 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~--~--~~--------~~~~~~ll~~~gI~i~pg---g----Ris~~~~ 404 (435)
.++++.+.+++.+. +.... +..++..|- + .+ .+..+++.++..+.+.+. | |+++.+.
T Consensus 388 lA~~~~~~l~~~~~---~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~ 464 (490)
T PLN02880 388 LAKEFEQLVAQDSR---FEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAP 464 (490)
T ss_pred HHHHHHHHHhcCCC---EEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCC
Confidence 77888888876542 44433 344433332 1 11 123355555566666643 3 9987553
Q ss_pred --CCCcHHHHHHHHHHHHHhhhhh
Q 013839 405 --TTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 405 --~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
+.++++.+++.|.++.+++.++
T Consensus 465 ~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 465 LTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999888776544
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=115.46 Aligned_cols=328 Identities=13% Similarity=0.153 Sum_probs=173.5
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...||+..|.-...-| ...+.+++++.+++....... .+.....++.+.+++...+ .+.+. ++++|
T Consensus 45 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~la~~l~~~~p~-------~~~v~--f~~sG 113 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLG-HAYPPVVEAVREALQDGCNFT-RPSAIELDAAESFLELIDG-------ADMVK--FCKNG 113 (431)
T ss_pred CCCCEEEEccccccchhcC-CCCHHHHHHHHHHHHhCcCCC-CCCHHHHHHHHHHHHhCCc-------cceEE--EecCH
Confidence 4678899998775211122 222344555555554332221 1222222455555555421 13666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEc-CCCChhhHHHHh-----hCCCC--e--eeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 127 TGACRLFAEFQRRFHPESHIYFP-DPTWSNHHNIWR-----DAQIP--E--RTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~-~p~y~~~~~~~~-----~~g~~--~--~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
++|++.+..+........+|+.. .-+|........ ..|.. . ..+.. . --|++.+++.+.+.+.+.
T Consensus 114 seA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~~l~~~~~~~ 188 (431)
T PRK06209 114 SDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF--R---YNDIASLEALFEDHPGRI 188 (431)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc--C---CCCHHHHHHHHHhCCCCE
Confidence 99999997665544332455544 223322111100 00110 0 01111 1 127899999887544456
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
.+|++.. -.|...+.+.+++|.++|++||+++|+||+..++.... .......+... + +.+++|.+| .|
T Consensus 189 aavi~Ep---v~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-----~g~~~~~gv~P-D--i~t~gK~lg-gG 256 (431)
T PRK06209 189 ACVILEP---ATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-----RGAQKLYGIVP-D--LSCFGKALG-NG 256 (431)
T ss_pred EEEEEcc---ccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-----chhhHHhCCCc-c--eeeehhhhc-CC
Confidence 6666643 23557788899999999999999999999986664321 11221112111 2 366899998 67
Q ss_pred CcccEEEEEecChhHHHHHHHH--HHHH--h----hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQ--IQQI--A----RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~--l~~~--~----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
..+|.+++ +++ +.+. +... . ...+.++++++..++.+.|+.-. + +...++..++.++
T Consensus 257 ~p~~av~~---~~~----i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~------~--~~~~~~~~~~g~~ 321 (431)
T PRK06209 257 FAVSALAG---KRE----YMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR------D--EDVIERLHEQGAK 321 (431)
T ss_pred cccEEEEE---HHH----HHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh------c--cCHHHHHHHHHHH
Confidence 88888864 777 6654 2111 1 12234445555555555543210 1 1233444444455
Q ss_pred HHHHHHh----hCCCCCccccccCcceeE--ec--C---C-CHH---HH-HHHhhhccEEEeCCCcEEeccCCCCcHHHH
Q 013839 349 LRQNLEK----LGSSLNWEHITNQLGMFC--FS--G---L-TPY---QV-DRLAKEFHIYMTQDGRISMAGVTTGNVNYL 412 (435)
Q Consensus 349 l~~~l~~----~~~~~~~~~~~~~~g~~~--~~--~---~-~~~---~~-~~ll~~~gI~i~pggRis~~~~~~e~i~~~ 412 (435)
+++.|++ ++... .....+.+.. ++ + . ... .+ ..+ .++||.+.| -+|+. ..++++|+++
T Consensus 322 l~~~L~~~~~~~~~~~---~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~p~-l~is~-~ht~~dId~~ 395 (431)
T PRK06209 322 LAAGVNEAAAEHGLQD---HVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQET-IRRGVLMPS-LVVSY-AHGDADIERT 395 (431)
T ss_pred HHHHHHHHHHhCCCCe---EEEeecceEEEEEecCCcccCCcHHHHHHHHHHH-HHCCccccc-ccccc-cCCHHHHHHH
Confidence 5555543 44211 1111222222 11 1 1 111 23 444 468998743 25554 3489999999
Q ss_pred HHHHHHHHHhh
Q 013839 413 ANAIHEVTRSE 423 (435)
Q Consensus 413 ~~~l~~~l~~~ 423 (435)
+++|.++++..
T Consensus 396 l~~l~~~l~~~ 406 (431)
T PRK06209 396 IDAVHGALGVY 406 (431)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=111.17 Aligned_cols=295 Identities=11% Similarity=0.028 Sum_probs=183.5
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
+..++-+.+.+|+...-+. .+++..+.+|+|||+|+..+....+-..+...|++++-++......++.+|++++.||.
T Consensus 130 ~s~~~E~~Vi~wla~L~g~--p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~ 207 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEI--EKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDT 207 (470)
T ss_pred hHHHHHHHHHHHHHHHhCC--CCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEecc
Confidence 4567777777776322111 02234466899999998777433333334457888888888899999999999999998
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCc-----eeeeeccCCCccCCCCcc
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGH-----FPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-----~vi~Deay~~~~~~~~~~ 247 (435)
.+++.+|++.|++++.++..++.+|+.+.+..++|.+ +++++|.++|+++|+ |+-+|.+|.++...-.+
T Consensus 208 --d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~- 281 (470)
T PLN02263 208 --LVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK- 281 (470)
T ss_pred --CCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc-
Confidence 3567999999999998654456777778888999976 667799999999996 99999999776532110
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc-----cccCCCh-----hHHHH
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA-----MYGSPPV-----HGILL 317 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~-----~~q~~ 317 (435)
..+.+ .+. ..-.=+.-+.+|.++ ....+|.+.. ... ..+.+.....+ .+...+. +..++
T Consensus 282 ~~~~~-df~--~~vDSIsvD~HK~l~-~P~~cgvll~---R~~----~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~ 350 (470)
T PLN02263 282 RAPKV-TFK--KPIGSVSVSGHKFVG-CPMPCGVQIT---RME----HINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 350 (470)
T ss_pred ccccc-CCC--cCccEEEECCccccC-CCcCEEEEEE---ehh----hHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence 11011 111 112234557889987 4477787753 333 22222111100 0111122 22222
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCC
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDG 397 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg 397 (435)
....++. +..++..++..++++++.+.+++.|. .....|......|...+.+. . .+|..+..-+
T Consensus 351 ~L~~~G~--------~G~~~~i~~~~~~A~~l~~~l~~~g~---~~~~~p~s~~V~f~~p~~~~----~-~~gW~L~~~~ 414 (470)
T PLN02263 351 TLNRKGY--------RGFQKEVQKCLRNAHYLKDRLREAGI---SAMLNELSSTVVFERPKDEE----F-VRRWQLACQG 414 (470)
T ss_pred HHHHhCH--------HHHHHHHHHHHHHHHHHHHHHHhCCC---eEEeCCCceEEEEecCchHH----h-hcceEEccCC
Confidence 2222221 45666777777888889999988874 23445555544444333221 1 2355554443
Q ss_pred ---cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 398 ---RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 ---Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
++.+.. .+.+.++++++.|++..+.
T Consensus 415 ~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 415 NIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 777654 4668899999999887663
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=113.99 Aligned_cols=333 Identities=14% Similarity=0.095 Sum_probs=194.4
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc---ccCCCeeeEecCCchhHHHHHHHHHHH--hC
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV---VKEGRSAGVQALSGTGACRLFAEFQRR--FH 141 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~---~~~~~v~~~~t~gg~~a~~~~~~~~~~--~~ 141 (435)
+.+...+-+++....+.....|....+..++-+.+.+|+...-+.+ .....-.+.+++||++|+..++....- +.
T Consensus 141 ~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~ 220 (539)
T PLN02590 141 TSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILK 220 (539)
T ss_pred CcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHh
Confidence 3444555555555554434556666677788888888873222211 000012355799999998665322111 11
Q ss_pred -------CCCEEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCC
Q 013839 142 -------PESHIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPT 208 (435)
Q Consensus 142 -------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPt 208 (435)
+.-.|++.+-++......+...|+ +++.||+....++.+|++.|++++.+. ...+.+|+-+....+|
T Consensus 221 ~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~t 300 (539)
T PLN02590 221 KVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSS 300 (539)
T ss_pred hhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCC
Confidence 112455667778888888888888 478888732246899999999999753 2346777777788888
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+ +++++|.++|++|++|+.+|.+|.++..-- +..+.+. +...-.=+....+|.+. ...-+|.+. ..
T Consensus 301 Gai---Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~-----~~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~ll--vr 369 (539)
T PLN02590 301 AAV---DPLVPLGNIAKKYGIWLHVDAAYAGNACIC-----PEYRKFIDGIENADSFNMNAHKWLF-ANQTCSPLW--VK 369 (539)
T ss_pred ccc---CCHHHHHHHHHHhCCeEEEecchhhhhhcC-----hhhHHHhcCCccCCEEEECchhhcC-cCcCEEEEE--ec
Confidence 875 667899999999999999999998766321 1222221 22223445667899987 446677775 33
Q ss_pred ChhHHHHHHHHHHHHhhcc----------------ccCCC-h---hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 288 DSKQAAAIRSQIQQIARAM----------------YGSPP-V---HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~----------------~~~~~-~---~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
++.. +.+.+.....+. ....+ . +-.+++...+. .+.+++..++..+.++
T Consensus 370 ~~~~---l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G--------~~G~~~~i~~~~~lA~ 438 (539)
T PLN02590 370 DRYS---LIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG--------SENLRNFIRDHVNLAK 438 (539)
T ss_pred CHHH---HHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4432 222221100000 00111 1 11112222222 1456677777788888
Q ss_pred HHHHHHHhhCCCCCccccc-cCcceeEec--C--CC--------HHHHHHHhhhccEEEeCC---C----cEEecc--CC
Q 013839 348 TLRQNLEKLGSSLNWEHIT-NQLGMFCFS--G--LT--------PYQVDRLAKEFHIYMTQD---G----RISMAG--VT 405 (435)
Q Consensus 348 ~l~~~l~~~~~~~~~~~~~-~~~g~~~~~--~--~~--------~~~~~~ll~~~gI~i~pg---g----Ris~~~--~~ 405 (435)
++.+.+++.+. +.... ++-+...|- . .+ .+..+++.++-.+.+.+. | |+++++ .+
T Consensus 439 ~~~~~l~~~~~---fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~ 515 (539)
T PLN02590 439 HFEDYVAQDPS---FEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTE 515 (539)
T ss_pred HHHHHHhcCCC---eEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCC
Confidence 88888877642 44433 343333332 1 11 123345544444555543 3 998865 36
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
+++++.+++.|.+...++.
T Consensus 516 ~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 516 EKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7889999999988766544
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-12 Score=117.37 Aligned_cols=368 Identities=15% Similarity=0.119 Sum_probs=208.5
Q ss_pred hhHHHHHhhhhhhhcccccc---ccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCC-cccchHHHHHH
Q 013839 2 YWRYLTRAARRCSVHTTSSR---TVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGR-PVVLQCVREAE 77 (435)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~-~~~~~~~~~~~ 77 (435)
|.||+-|+++-|+---+.+. .+-.-++++-.-. ..|+.. .+....+||++=+|..+.-. .+..+...+++
T Consensus 91 Y~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S~D~n-~tfk~t-----G~~~~~lNlgSYNYLGFa~~~g~ca~~~~~~~ 164 (519)
T KOG1357|consen 91 YSRRIYRRIRDCFERPICSVPGAWVDLMDRVSDDYN-WTFKYT-----GTRSRCLNLGSYNYLGFAQSVGPCAEASLKSF 164 (519)
T ss_pred HHHHHHHHHhHhhcCCCcCCCCceEEeeeeeccCCC-ceEEec-----cceeeeeeecccccccccccCCcCChHHHHHH
Confidence 78999999999984433222 1222222222111 111111 12235667666555333221 12233444444
Q ss_pred HHhc---CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCh
Q 013839 78 AKIA---GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWS 154 (435)
Q Consensus 78 ~~~~---~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~ 154 (435)
.... .+....-+...-+.++.+.+|+++ +. ++-++ ..=|-++.... +-.++.||.-|+-..--+.
T Consensus 165 ~kygl~~css~~e~G~~~~hkelE~l~A~f~-g~------e~a~v---F~mGf~TNs~~--~p~l~~~gsLIiSDelNHa 232 (519)
T KOG1357|consen 165 DKYGLSRCSSRHEAGTTEEHKELEELVARFL-GV------EDAIV---FSMGFATNSMN--IPSLLGKGSLIISDELNHA 232 (519)
T ss_pred HHhcccccccchhcccHHHHHHHHHHHHHhc-CC------cceEE---EeccccccccC--cceeecCCcceeeccccch
Confidence 4443 111222222233456777777776 33 33344 33344444444 6667889988888777666
Q ss_pred hhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---------CCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 013839 155 NHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---------PDSSF-FLLHPSAHNPTGVDPTEEQWREISYQF 224 (435)
Q Consensus 155 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---------~~~~~-~v~~~~p~NPtG~~~~~~~l~~i~~~~ 224 (435)
....-++..|+.+..+.. + |.++||+.++++ ++-.+ ++++..-..--|. ..++.+++.++
T Consensus 233 Si~~GaRLSgAtiRVfkH---N----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~---iv~Lp~vvalk 302 (519)
T KOG1357|consen 233 SLITGARLSGATTRVFRH---N----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGT---IVDLPEVVALK 302 (519)
T ss_pred heeccccccCceEEEEec---C----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCe---ecccHHHHHhh
Confidence 666667888888877654 2 566777776652 11123 3333322223333 44677999999
Q ss_pred HhcCceeeeeccCCCccCCCCcccHHHHHHh--hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 225 KVKGHFPFFDMAYQGFASGDLDKDAQAIRIF--LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 225 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
+++.++++.||++..-.-+. .......+ .+..+.+|.+++|+|.+|..| ||+. ++++ +++.++..
T Consensus 303 kkykayl~lDEAHSiGA~g~---tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyia---gsk~----lid~lrt~ 369 (519)
T KOG1357|consen 303 KKYKAYLYLDEAHSIGAMGA---TGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIA---GSKE----LIDYLRTP 369 (519)
T ss_pred ccccEEEEeeccccccccCC---CCcceeeccCCCchhheeecceehhhccccc---ceec---CcHH----HHhhhccC
Confidence 99999999999975444321 11122222 233467899999999999888 8884 3888 88877764
Q ss_pred hhc---cccCCChhHHHHHHHH---hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec-
Q 013839 303 ARA---MYGSPPVHGILLVATI---LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS- 375 (435)
Q Consensus 303 ~~~---~~~~~~~~~q~~~~~~---l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~- 375 (435)
... ....++++.|...... ..... .+..++..+++.++..+++..|...| +.+...+.+..+-+
T Consensus 370 s~~~~yat~~sppvaqq~~ssl~~i~G~dg-----t~~g~~k~~~l~~ns~yfr~~l~~~g----fivyG~~dSpVvpll 440 (519)
T KOG1357|consen 370 SPSALYATSLSPPVAQQILTSVKHIMGEDG-----TNRGRQKIERLAENSRYFRWELQKMG----FIVYGNNDSPVVPLL 440 (519)
T ss_pred CCceeecccCChHHHHHHHHHHHhhcCCCc-----ccHHHHHHHHHHhhhHHHHHhhhcCc----EEEecCCCCCcceee
Confidence 432 2334555555554332 22111 14456777889999999999998877 34555554422211
Q ss_pred ----CCCHHHHHHHhhhccEEEeCCC-----------cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 376 ----GLTPYQVDRLAKEFHIYMTQDG-----------RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 376 ----~~~~~~~~~ll~~~gI~i~pgg-----------Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
..-..+-+.++ +++|.++-.| |++.+. .+.|+++++++.+.++=
T Consensus 441 l~~~~k~~~f~r~~l-~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 441 LYGPAKIVAFSREML-ERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred ecCcccccHHHHHHH-hcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 11334445665 4677766443 777643 36788888887776543
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-10 Score=105.63 Aligned_cols=345 Identities=13% Similarity=0.053 Sum_probs=197.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++.+.||+..++...-.|+. .+++.+++..++... ....|-- ...-.+-+.+.+.+ +.. ..+.|. +.+
T Consensus 53 ~~g~EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t-~eav~l~~~l~~~~-~~~----~~~rvf--f~n 123 (433)
T KOG1401|consen 53 PDGKEYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFT-LEAVELEEVLSAVL-GKG----SAERVF--FCN 123 (433)
T ss_pred CCcceeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCcccc-HHHHHHHHHHHhcc-cCC----CccEEE--Eec
Confidence 356899999999754444433 444445444444421 1111211 11223444444443 222 257888 999
Q ss_pred CchhHHHHHHHHHHHhCCC----C--EEEEcCCCChhhH-HHHhhCCCCeeeeeecC-CCC----CCcChHhHHHHhhcC
Q 013839 125 SGTGACRLFAEFQRRFHPE----S--HIYFPDPTWSNHH-NIWRDAQIPERTYHYYD-PDS----KSLDFAALMDDIKNA 192 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~g----d--~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~-~~~----~~~d~e~l~~~i~~~ 192 (435)
+||+|++.++.+.....-- + .++....+|.+.. ..+...+......|..+ ..+ ---|...+++.++.+
T Consensus 124 sGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h 203 (433)
T KOG1401|consen 124 SGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESH 203 (433)
T ss_pred CCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhC
Confidence 9999999997555433211 2 3888888886553 22322222111111100 000 122689999999977
Q ss_pred CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
.....++++..-+-..|... +++.+..|.+.|+++|+++|.||+..+|...+ ..+....+.-.+| +.++.|.
T Consensus 204 ~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e~~~~~PD----I~t~aK~ 276 (433)
T KOG1401|consen 204 KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQEYFGVTPD----ITTVAKP 276 (433)
T ss_pred CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHHHhCcCCc----ceeehhh
Confidence 66678898888787888876 78889999999999999999999988877654 2344433322222 4568999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhh---ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR---AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
++ .|+.+|..++ +++ +.+.+..-.. ..+++.++++..++...+..-. + .+.++++.+.-+..++.
T Consensus 277 L~-gGlPigA~~v---~~k----V~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~--~--~e~~k~vs~~~k~L~~~ 344 (433)
T KOG1401|consen 277 LG-GGLPIGATGV---RDK----VAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK--D--PETLKNVSKIGKELRKL 344 (433)
T ss_pred cc-CCceeEEEee---hHH----HHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc--C--HHHHHHHHHHHHHHHHH
Confidence 98 8999999875 777 7666654332 4456666777766666554210 0 13445555555555555
Q ss_pred HHHHHHhhCCCCCccccccCcceeEec----CC----CH-----HHHH---HHhhhccEEEeCCCcEEeccCCCCcHHHH
Q 013839 349 LRQNLEKLGSSLNWEHITNQLGMFCFS----GL----TP-----YQVD---RLAKEFHIYMTQDGRISMAGVTTGNVNYL 412 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~~~~g~~~~~----~~----~~-----~~~~---~ll~~~gI~i~pggRis~~~~~~e~i~~~ 412 (435)
+.+.+..-+. ...-. ...|+++.. .+ +. .++. ..+.+.|+.+.|-+-++... ++|.++++
T Consensus 345 l~e~~~~~~~--~i~g~-~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~-~~E~i~~~ 420 (433)
T KOG1401|consen 345 LDEYLKKTPN--SICGG-VGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEH-TPEVIQRL 420 (433)
T ss_pred HHHHhccCCC--ceeee-eeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccC-cHHHHHHH
Confidence 6666544331 11111 223333322 11 11 1111 11223577777744344433 57788888
Q ss_pred HHHHHHHHHhh
Q 013839 413 ANAIHEVTRSE 423 (435)
Q Consensus 413 ~~~l~~~l~~~ 423 (435)
++.+.+.+..+
T Consensus 421 l~i~~~~l~~~ 431 (433)
T KOG1401|consen 421 LTILEKVLSAL 431 (433)
T ss_pred HHHHHHHHHHh
Confidence 88888777654
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=112.86 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=120.1
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
..|...=-|+.|+.+++.+-+ .. +++|++.|+..+ .++++.+||.|+++.+++......+.+.|+.++++
T Consensus 68 p~G~i~eAqe~aA~~fgAd~t------yF--vvNGTS~ank~v--i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl 137 (557)
T COG1982 68 PEGPIKEAQELAARVFGADHT------YF--VVNGTSTANKAV--INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYL 137 (557)
T ss_pred CCccHHHHHHHHHHHhCCCce------EE--EECCccHHHHHH--HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEe
Confidence 355544445566666676533 34 689999999888 88999999999999999998888889999999987
Q ss_pred eecCCC--C--CCcChHhHHHHhhcCCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 171 HYYDPD--S--KSLDFAALMDDIKNAPDSSFFLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 171 ~~~~~~--~--~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
...-.. + ++++.+.+++++.+++...+++++ .||| |++++. ++|.+.+...++|+.+|++. +..++.
T Consensus 138 ~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vi---tnpTYdGv~~n~---~~i~~~~~~~~a~v~~deah-~~~~~~ 210 (557)
T COG1982 138 EPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNL---RKIVELLHHYGAWVLYDEAH-PAHFDF 210 (557)
T ss_pred cCCCCccccccCCCCHHHHHHHHHhChhhheeEEE---ecCccceEeecH---HHHHHHHhhcCceEEhhhcC-cccccc
Confidence 542222 1 688999999998877544266666 5777 666654 58889999999999999994 444331
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
. +..+- .......+++..|..|.++ ++.-+.++
T Consensus 211 ~--~~l~~--~~~~~~~~~~tqS~HK~l~--alSQaS~i 243 (557)
T COG1982 211 S--PMLPE--SALNGGADFVTQSTHKLLA--ALSQASMI 243 (557)
T ss_pred c--ccCcc--hhhhcCceEEEechhhhhh--hhhhhHHH
Confidence 1 11111 1223467899999999974 44444443
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-10 Score=110.26 Aligned_cols=276 Identities=12% Similarity=0.069 Sum_probs=149.6
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhC------C------CCEEEEcCCCChhhHHHHh-hCCCC-------e------ee
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFH------P------ESHIYFPDPTWSNHHNIWR-DAQIP-------E------RT 169 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~------~------gd~Vlv~~p~y~~~~~~~~-~~g~~-------~------~~ 169 (435)
+.+. ++++|++|++.+.++..... . +.+|+...-+|.+...... ..|.. . +.
T Consensus 104 ~~v~--f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 181 (431)
T TIGR03251 104 PHLF--FIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID 181 (431)
T ss_pred CEEE--EeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCC
Confidence 4666 89999999999976655431 1 3679999988877654322 11211 0 00
Q ss_pred eeec----CCCCC-------CcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccC
Q 013839 170 YHYY----DPDSK-------SLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAY 237 (435)
Q Consensus 170 v~~~----~~~~~-------~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay 237 (435)
.|.. +.++. .-+++++++.+.+.+.++.++++...+.-.|.. .+++.+++|.++|++||+++|.||++
T Consensus 182 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 261 (431)
T TIGR03251 182 NPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQ 261 (431)
T ss_pred CCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch
Confidence 1100 00000 013455666676555678888887777777876 47888999999999999999999999
Q ss_pred CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH-HHHH-hhccccCCChhHH
Q 013839 238 QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ-IQQI-ARAMYGSPPVHGI 315 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~-l~~~-~~~~~~~~~~~~q 315 (435)
.++...+ ..+....+ +....++ +++|.+ +. .|++. .++ ...+... +... ....+.+.+.++.
T Consensus 262 tG~GrtG---~~~a~~~~-gv~PDi~---~~gK~~--~~--~g~~~----~~~-i~~~~~~~~~~~~~~~~T~~gnpl~~ 325 (431)
T TIGR03251 262 TGVGLTG---TAWAYQQL-GVQPDIV---AFGKKT--QV--CGIMA----GRR-VDEVADNVFAVPSRLNSTWGGNLVDM 325 (431)
T ss_pred hccCccc---hHHHHHhc-CCCCCEE---EecccC--cc--ceEEe----cch-HHHhhhhcccCccccCCCCCCCHHHH
Confidence 8887653 12232222 2222233 368875 22 25553 332 1112211 1100 1123455666666
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC-C---HHHHHHHhhhc
Q 013839 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL-T---PYQVDRLAKEF 389 (435)
Q Consensus 316 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~-~---~~~~~~ll~~~ 389 (435)
.++.+.|+.-. + ....++.+++-+.+.+.|+++. .+..+...... |.+..+.+ + ...+.+.+.++
T Consensus 326 aaa~a~L~~l~------~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~-G~~~~i~~~~~~~~~~~~~~l~~~ 396 (431)
T TIGR03251 326 VRATRILEIIE------E--ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMCAFDLPSTADRDEVIRQLYRE 396 (431)
T ss_pred HHHHHHHHHHH------h--cCHHHHHHHHHHHHHHHHHHHHHhCccceeccccc-ceeEEEEeCCHHHHHHHHHHHHhC
Confidence 66666654210 1 1122333444444444443321 11001122233 33443333 1 22343334568
Q ss_pred cEEEeCCC----cEEec-cCCCCcHHHHHHHHHH
Q 013839 390 HIYMTQDG----RISMA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 390 gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~ 418 (435)
||.+.+.| ||+.. ..+++++++++++|.+
T Consensus 397 Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 397 GVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred CeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 99998865 77643 2388999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-10 Score=109.75 Aligned_cols=258 Identities=14% Similarity=0.096 Sum_probs=159.9
Q ss_pred ecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCChhh-H-HHHhhCCC-CeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 122 QALSGTGACRLFAEFQRRF-HPESHIYFPDPTWSNH-H-NIWRDAQI-PERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~-~~gd~Vlv~~p~y~~~-~-~~~~~~g~-~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
++.+||++++.+ +..++ .+||+|++.. .|+.- . ++++.+|+ ++..+.. +.+..+|+++++. . +
T Consensus 63 l~GsGT~a~Eaa--~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~--~~g~~~~~~~ve~--~---~--- 129 (374)
T TIGR01365 63 VPASDTGAVEMA--LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA--EYGKLPDLKKVDF--K---N--- 129 (374)
T ss_pred ECCchHHHHHHH--HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC--CCCCCCCHHHcCC--C---C---
Confidence 688999999999 88888 4899999865 55443 4 77888998 4666654 5566788888862 1 1
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~ 277 (435)
.+++++....||+..+.+ +++..+ ++.++|+|.+ +.+.-.+.+ + + .-++++.|..|++++|+
T Consensus 130 ~v~~vhnETSTGv~npv~---~i~~~~--~~~lliVDav-Ss~g~~~l~-----~----d--~iDv~~tgsQK~L~~pp- 191 (374)
T TIGR01365 130 DVVFTWNGTTSGVRVPNG---DFIPAD--REGLTICDAT-SAAFAQDLD-----Y----H--KLDVVTFSWQKVLGGEG- 191 (374)
T ss_pred CEEEecCCCchheecccc---cccccc--CCCcEEEEcc-chhcCCCCC-----h----h--HCcEEEEechhccCCCC-
Confidence 245667777888888753 444222 5899999999 444433221 1 1 24677888999998765
Q ss_pred cccEEEEEecChhHHHHHHH--------HHHH----------Hh-hccccCCChhHHHHHHHHhCChhhHHHHHH-HHHH
Q 013839 278 RVGCLSILCVDSKQAAAIRS--------QIQQ----------IA-RAMYGSPPVHGILLVATILSDPNLKSLWID-EVKI 337 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~--------~l~~----------~~-~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~ 337 (435)
.++++++ +++.+++... .+.+ .. ......++....+++..+|..- .++ .++.
T Consensus 192 Gls~v~v---s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i-----~~egGle~ 263 (374)
T TIGR01365 192 AHGMLIL---SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWA-----ESIGGLKP 263 (374)
T ss_pred ceEEEEE---CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHH-----HHccCHHH
Confidence 2445543 7775544221 1000 00 1223344444444444444311 112 4888
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCccc---cccCcce-eEec-C-C-----C-----HHHHHHHhhhccEEEeCCC---
Q 013839 338 MADRIQRKRTTLRQNLEKLG-SSLNWEH---ITNQLGM-FCFS-G-L-----T-----PYQVDRLAKEFHIYMTQDG--- 397 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~-~~~~~~~---~~~~~g~-~~~~-~-~-----~-----~~~~~~ll~~~gI~i~pgg--- 397 (435)
..+|++++++.+++.++++| .. .+.. ....... +... + + + .+.+.+.++++||.+.+|.
T Consensus 264 ~~~Rh~~~a~~l~~~l~~lg~l~-~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~ 342 (374)
T TIGR01365 264 LIARADDNLAVLEAFVAKNNWIH-FLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRD 342 (374)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcc-cCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEecccccc
Confidence 99999999999999999998 32 1111 1111111 1121 2 3 2 3556666678899999873
Q ss_pred -----cEE-eccCCCCcHHHHHHHHHHH
Q 013839 398 -----RIS-MAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 398 -----Ris-~~~~~~e~i~~~~~~l~~~ 419 (435)
||+ ++..+.++++.+++.|.=+
T Consensus 343 ~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 343 APSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 997 4556889999888887643
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-10 Score=110.36 Aligned_cols=277 Identities=11% Similarity=0.035 Sum_probs=155.0
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhC------------------------CC---CEEEEcCCCChhhHHHHh-hCCCC-
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFH------------------------PE---SHIYFPDPTWSNHHNIWR-DAQIP- 166 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~------------------------~g---d~Vlv~~p~y~~~~~~~~-~~g~~- 166 (435)
+++. ++++|++|++.+..+..... +| .+|+....+|.+...... ..|-.
T Consensus 123 ~~v~--f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~ 200 (464)
T TIGR00699 123 DQVW--TGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKP 200 (464)
T ss_pred CEEE--EeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcc
Confidence 4677 89999999999976554321 11 269999999977644322 11110
Q ss_pred ----------eeeeeecCCC-C-----------CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHH
Q 013839 167 ----------ERTYHYYDPD-S-----------KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQ 223 (435)
Q Consensus 167 ----------~~~v~~~~~~-~-----------~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~ 223 (435)
...+|..... . ..-+++.+++.+.+......+|++.......|... +++.+++|.++
T Consensus 201 ~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~l 280 (464)
T TIGR00699 201 IHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDI 280 (464)
T ss_pred ccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHH
Confidence 1111210000 0 00145667777865545678888877777778877 68889999999
Q ss_pred HHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC-CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 224 FKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE-HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 224 ~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
|++||+++|.||+..+|...+ ..+....+ +.. ..+| .+++|.+|..| +++ + . + ........
T Consensus 281 c~~~g~lLI~DEV~tGfGrtG---~~fa~e~~-gv~~~PDi--~t~gK~lg~gG----~~~--~-~-~----~~~~~~~~ 342 (464)
T TIGR00699 281 TKKHNVAFIVDEVQTGVGATG---KFWAHEHW-NLDDPPDM--VTFSKKFQTAG----YFF--H-D-P----AFRPNKPY 342 (464)
T ss_pred HHHcCCEEEEeeeeeCCCCCc---chhHHHhc-CCCCCCCE--EEehhhhccCC----ccc--c-c-h----hccCCCCc
Confidence 999999999999988776543 12233222 221 1222 45799986233 442 2 2 2 21111111
Q ss_pred hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccc-cCcceeEecCC-C
Q 013839 303 ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHIT-NQLGMFCFSGL-T 378 (435)
Q Consensus 303 ~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~-~~~g~~~~~~~-~ 378 (435)
....+.+.++++..++.+.|+.-. .+...++.++.-++|.+.|+++. .+..+.... ...|++.-+.+ +
T Consensus 343 ~~~~T~~gnp~~~aaa~a~L~~l~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~ 414 (464)
T TIGR00699 343 RQFNTWMGDPSRALILREIIQEIK--------RKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPD 414 (464)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCC
Confidence 123455566666666655553211 12333445555555556665542 110111222 12343433333 2
Q ss_pred ---HHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 379 ---PYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 379 ---~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
...+.+.+.++||.+.+.| ||... ..+++++++++++|.+++
T Consensus 415 ~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 415 EAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2234333346899998876 66643 348999999999998753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-10 Score=107.73 Aligned_cols=345 Identities=11% Similarity=-0.007 Sum_probs=187.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
+++..+|-..|....--|. ..++..+++.+++.. -......... ..+|-+.+++..-..+ -++|. ++.
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh-~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~~~-----l~~vF--f~~ 112 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGH-GRPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPEGG-----LDHVF--FTD 112 (449)
T ss_pred CCCEEEecccHHHHhhcCc-CCHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCCCC-----ccEEE--EeC
Confidence 5577788777754222221 122333344444432 1011111111 3455555555553111 35788 999
Q ss_pred CchhHHHHHHHHHHH-h-CCC----CEEEEcCCCChhhHHHHhhC-C-------------CCeeeeeecC-----C-CCC
Q 013839 125 SGTGACRLFAEFQRR-F-HPE----SHIYFPDPTWSNHHNIWRDA-Q-------------IPERTYHYYD-----P-DSK 178 (435)
Q Consensus 125 gg~~a~~~~~~~~~~-~-~~g----d~Vlv~~p~y~~~~~~~~~~-g-------------~~~~~v~~~~-----~-~~~ 178 (435)
||++|++.++++..- + ..| .+++.-..+|.+-.-..-.. | ..+..++... . ..+
T Consensus 113 sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~ 192 (449)
T COG0161 113 SGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192 (449)
T ss_pred CchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCC
Confidence 999999999743322 2 233 34777778886432111111 1 1122222210 0 001
Q ss_pred C----cChHhHHHHhhcCC-CCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 179 S----LDFAALMDDIKNAP-DSSFFLLHPSAHNP-TGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 179 ~----~d~e~l~~~i~~~~-~~~~~v~~~~p~NP-tG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. -..++|++.+.++. .+..++++.....- +|+.+ ++..|+++.++|++||+++|.||+-.+|+-.+ ....
T Consensus 193 ~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG---~~FA 269 (449)
T COG0161 193 DEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG---KMFA 269 (449)
T ss_pred hHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCc---hhhh
Confidence 1 23577888887765 56677777655555 78876 56679999999999999999999999988765 1222
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH-----hhccccCCChhHHHHHHHHhCChh
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-----ARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
...+ +....++ +++|.++-.=+.+|.++ + +++ +.+.+..- ....+.+.++++..++.+-| +
T Consensus 270 ~e~~-gi~PDi~---~~aKGLT~GY~Pl~a~l--~-~~~----I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L---~ 335 (449)
T COG0161 270 CEHA-GIVPDIL---CLAKGLTGGYLPLSAVL--T-SDR----IYEAFSDGDAGAFMHGHTYSGNPLACAAALANL---D 335 (449)
T ss_pred hhhc-CCCCCee---eecccccccchhhHhHh--h-hHH----HHHHHhcccCCeeccCCccccCHHHHHHHHHHH---H
Confidence 2222 2222333 36888763334455553 2 556 66665543 12234455566444444333 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccccCcceeEecCC----C---------HHHHHHHhhhccEE
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHITNQLGMFCFSGL----T---------PYQVDRLAKEFHIY 392 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~g~~~~~~~----~---------~~~~~~ll~~~gI~ 392 (435)
+.+. +...++.++...++.+.|++ +.....+-.. ..-|+..-+.+ . ...+.....++|+.
T Consensus 336 i~e~-----e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV-R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~ 409 (449)
T COG0161 336 ILEE-----EDLLERVAEIGAYLQAGLQAALADHPLVGDV-RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLL 409 (449)
T ss_pred HHHh-----cCHHHHHHHHHHHHHHHHHHhcccCCcEEEe-eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeE
Confidence 2111 34455566666777777765 2210011112 23344443322 1 23555556679999
Q ss_pred EeCCC-cEEec---cCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MTQDG-RISMA---GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~pgg-Ris~~---~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++|.| -+-++ ..++++++++++++++.+++..
T Consensus 410 iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 410 IRPLGDVIYLMPPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred EeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 99998 33332 2489999999999999998654
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-10 Score=107.94 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=155.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecC-CCCCCcChHhHHHHhhcCCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYD-PDSKSLDFAALMDDIKNAPDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ 198 (435)
+..||+.+++.+ ++.++.+||++++..-+..+- ...++.+|...+.....+ .....++++++ +.. +..+.
T Consensus 76 l~Gsgt~~~ea~--~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~ 148 (365)
T PLN02452 76 LQGGASTQFAAI--PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT-PDAKF 148 (365)
T ss_pred EeCccHHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC-CCCcE
Confidence 567789998888 888888999988777555333 345667776433332111 11124566654 222 45778
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
+.+++.+..||+.++ +++++. ++++|+|.+ +.+.-.+. ++..+ + + ...|..|++|.+|
T Consensus 149 v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~-Ss~g~~pi-----dv~~~----~-v-~~~saqK~lGP~G-- 206 (365)
T PLN02452 149 VHICANETIHGVEFK--DYPDVG------NVPLVADMS-SNFLSKPV-----DVSKY----G-V-IYAGAQKNVGPSG-- 206 (365)
T ss_pred EEECCCCCCCcEecC--cccccC------CCeEEEECC-ccccCccc-----CHHHc----C-E-EEEecccccCCCC--
Confidence 888888888898643 233432 379999999 44443222 12111 1 2 3369999999888
Q ss_pred ccEEEEEecChhHHHHHHHH---HHHH-----hhccccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHH
Q 013839 279 VGCLSILCVDSKQAAAIRSQ---IQQI-----ARAMYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTL 349 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~---l~~~-----~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l 349 (435)
+|.+++ +++.+++.... +..+ ....+.+++....+++..+|+.-. ++ .++.+.++++++.+++
T Consensus 207 l~~v~v---r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~-----~~gGl~~~~~r~~~~a~~l 278 (365)
T PLN02452 207 VTIVII---RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLL-----AQGGLKAMEKRNIRKADLL 278 (365)
T ss_pred eEEEEE---cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHH
Confidence 566654 77743331110 0000 112335677777777777765321 12 4788999999999999
Q ss_pred HHHHHhh-CCCCCcccccc--CcceeE-ec--CC-CHHHHHHHhhhccEEEeCCC------cEEecc-CCCCcHHHHHHH
Q 013839 350 RQNLEKL-GSSLNWEHITN--QLGMFC-FS--GL-TPYQVDRLAKEFHIYMTQDG------RISMAG-VTTGNVNYLANA 415 (435)
Q Consensus 350 ~~~l~~~-~~~~~~~~~~~--~~g~~~-~~--~~-~~~~~~~ll~~~gI~i~pgg------Ris~~~-~~~e~i~~~~~~ 415 (435)
++.|++. |+.. ....+ ...+.+ |. +. ..+.+.+.++++|+...+|. |+|..+ ++.++++.+++.
T Consensus 279 ~~~l~~~~G~y~--~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~ 356 (365)
T PLN02452 279 YDAIDESNGFYV--CPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAF 356 (365)
T ss_pred HHHHHhCCCccc--CCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHH
Confidence 9999875 3311 11111 122222 21 22 22334444578999999982 998644 578888888888
Q ss_pred HHHHHH
Q 013839 416 IHEVTR 421 (435)
Q Consensus 416 l~~~l~ 421 (435)
++++-+
T Consensus 357 m~~f~~ 362 (365)
T PLN02452 357 MKDFQA 362 (365)
T ss_pred HHHHHH
Confidence 877654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-10 Score=116.90 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=175.4
Q ss_pred CCCCCCC---cccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh------CCCCEEEEcCCC
Q 013839 85 FLESISA---SVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF------HPESHIYFPDPT 152 (435)
Q Consensus 85 ~~~Y~~~---~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~------~~gd~Vlv~~p~ 152 (435)
.+.|.|. +|.-++...+.+++ .|.+ ++ .+...+|+.+-...+...... ...++|+++.-.
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd-------~~-Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~sa 587 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD-------AI-SLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSA 587 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC-------Cc-ccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccc
Confidence 4456654 56666666666665 3443 21 235666776655332111111 122578899988
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
++.....+...|++++.++. .+++.+|+++|+++++++..++++|++.+|+| +|..-+ ++++|+++|+++|.+++
T Consensus 588 HgtnPasa~~~G~~Vv~V~~--d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~ 662 (939)
T TIGR00461 588 HGTNPASAAMAGMQVVPVNC--DQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVY 662 (939)
T ss_pred cCcCHHHHHHCCCEEEEecc--CCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEE
Confidence 76666668889999999987 35678999999999985445789999999999 787642 37899999999999999
Q ss_pred eeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEeccccccc----ccCCcccEEEEEecChhHHHHHHHHHHHH-----
Q 013839 233 FDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG----LYGHRVGCLSILCVDSKQAAAIRSQIQQI----- 302 (435)
Q Consensus 233 ~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g----~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----- 302 (435)
+|.++.. +.. .. -+...+-+++.+|..|.|+ ..|-.+|.+.+ .++ +...+-..
T Consensus 663 VDgAq~~al~~--l~--------~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~v---r~~----L~~~lPg~~v~~t 725 (939)
T TIGR00461 663 LDGANMNAQVG--LT--------SPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KSH----LIPFLPKHDVVSM 725 (939)
T ss_pred EEecChhhCCC--CC--------CccccCCCEEEecCCccCCCCCCCCCCCeEEEEE---hhh----chhhcCCCccccc
Confidence 9999632 221 10 1122356788899999764 33455788853 433 32222100
Q ss_pred -------hh-ccccC--CCh-hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcce
Q 013839 303 -------AR-AMYGS--PPV-HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGM 371 (435)
Q Consensus 303 -------~~-~~~~~--~~~-~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 371 (435)
+. ...++ ... .....+...+..-+ .+.+++..+....+.+++.+.|++. .+ + ..+...+.
T Consensus 726 ~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG-----~~GL~~~a~~ailnAnYl~~rL~~~-~~--~-l~~~~~~~ 796 (939)
T TIGR00461 726 ITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMG-----NEGLPKASVVAILNANYMATRLKDH-YP--I-LFVGTLKH 796 (939)
T ss_pred ccCCCCccccccccccccCcHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHhhcc-Cc--c-cccCCCCc
Confidence 00 00111 111 00011111222111 1456677777777888999998763 21 1 12222222
Q ss_pred ----eEe--c------CCCHHHH-HHHhhhccEEEeCC-----C----cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 372 ----FCF--S------GLTPYQV-DRLAKEFHIYMTQD-----G----RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 372 ----~~~--~------~~~~~~~-~~ll~~~gI~i~pg-----g----Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
|++ . |.+.+.+ ++| .++|+....- | +.+-.. +.++|+++++++.++-++..+
T Consensus 797 ~~hEfv~~~~~~~~~~g~~~~dIakrL-~d~G~hapt~~~pv~g~lmiepTE~e-skeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 797 VAHECILDLRPLKAKTGIEAIDVAKRL-QDYGFHAPTLSFPVPGTLMVEPTESE-SLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred eeEEEEEeccchhhhcCCCHHHHHHHH-HhCCeeccccCCccCCeEEEEeeccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 221 1 2444555 555 4689865211 3 333333 778899999999887765543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-10 Score=115.37 Aligned_cols=299 Identities=13% Similarity=0.058 Sum_probs=173.6
Q ss_pred CCCCC---CcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHH--hCCC----CEEEEcCCCC
Q 013839 86 LESIS---ASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR--FHPE----SHIYFPDPTW 153 (435)
Q Consensus 86 ~~Y~~---~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~--~~~g----d~Vlv~~p~y 153 (435)
+.|.| .+|.-++...+.+++ .|.+ .+.+.-.+|+.+....+..... ..+| ++|+++.-.+
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd--------~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saH 601 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFD--------AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAH 601 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCC--------eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEeccccc
Confidence 55888 788877777777665 3443 2222445666666444212221 2233 5778888766
Q ss_pred hhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 154 SNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
......+...|++++.++. + +++.+|+++|++++++..+++.++.+.+|++=++. .+++++|+++|+++|+++++
T Consensus 602 gtNpasa~~~GieVv~Vp~-D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv~v 676 (954)
T PRK12566 602 GTNPASAQMAGMRVVIVEC-D-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQVYM 676 (954)
T ss_pred ccCHHHHHHCCCEEEEecc-C-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEEEE
Confidence 4445557788999999998 3 45689999999999755567788888777654433 46688999999999999999
Q ss_pred eccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc----CCcccEEEEEecChhHHHHHHHHHHHHh------
Q 013839 234 DMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY----GHRVGCLSILCVDSKQAAAIRSQIQQIA------ 303 (435)
Q Consensus 234 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~----G~RvG~~~~~~~~~~~~~~~~~~l~~~~------ 303 (435)
|.+. ........ . +...+-+++.+++.|+|+.| |.-+|.+.+ .+. +...+.+.-
T Consensus 677 DgA~-~~a~~~l~----~----Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav---~~~----L~pfLp~~P~~d~~G 740 (954)
T PRK12566 677 DGAN-LNAQVGLA----R----PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGV---RAH----LAPFVANHPVVPVEG 740 (954)
T ss_pred EeeC-hhhccCCC----C----hhhcCCCEEEecCCcccCcCccCCCCccchhhh---hhh----hhhhccCCCCcCCCC
Confidence 9994 22222110 0 12235578899999988533 333455421 222 322222210
Q ss_pred ---h-ccccCCChhH---HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeE---
Q 013839 304 ---R-AMYGSPPVHG---ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC--- 373 (435)
Q Consensus 304 ---~-~~~~~~~~~~---q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~--- 373 (435)
+ ...++.+..+ ..++..++..-+ + + +++..+....+.+++.+.|.+. .+ ..+ .+..+.|.
T Consensus 741 ~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG----~-e-Lk~aa~~ailnAnYla~rL~~~-~~--v~~-~~~~~~~~hEf 810 (954)
T PRK12566 741 PDPNNGAVSAAPWGSASILPISWMYIAMMG----P-Q-LADASEVAILSANYLANQLGGA-FP--VLY-RGRNERVAHEC 810 (954)
T ss_pred CCCCCCceeecccchHHHHHHHHHHHHHHC----H-H-HHHHHHHHHHHHHHHHHHhHhh-CC--CCc-CCCCCCeeeEE
Confidence 0 0111111111 112222332211 1 2 5555555566888888888763 22 223 22222211
Q ss_pred ---ec------CCCHHHH-HHHhhhccEEEe----CC--C-cEEeccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 374 ---FS------GLTPYQV-DRLAKEFHIYMT----QD--G-RISMAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 374 ---~~------~~~~~~~-~~ll~~~gI~i~----pg--g-Ris~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
+. +.+.+.+ .+|+ ++||... |. + |++..-. +.++|++++++|+++.++..
T Consensus 811 ii~~~~l~~~~g~~~~dvakRL~-d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 811 ILDLRPLKAQTGISEEDVAKRLM-DYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred EEEccccccccCCCHHHHHHHHH-HCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 11 2343444 6665 7888653 22 2 8886432 78899999999998887643
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=115.73 Aligned_cols=303 Identities=11% Similarity=0.069 Sum_probs=172.6
Q ss_pred CCCCC---CcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHH-HHHH-HhCCCC----EEEEcCCCC
Q 013839 86 LESIS---ASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFA-EFQR-RFHPES----HIYFPDPTW 153 (435)
Q Consensus 86 ~~Y~~---~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~-~~~~-~~~~gd----~Vlv~~p~y 153 (435)
+.|.| .+|.-++...+.+++ .|.+ ++. +..++|+++....+ .+.. ...+|| +|++++..+
T Consensus 529 hP~qp~e~~qG~l~~i~e~q~~l~eltG~d-------~~s-l~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH 600 (954)
T PRK05367 529 HPFAPAEQAAGYRELIDQLEAWLAEITGYD-------AVS-LQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAH 600 (954)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHCCC-------CEE-ECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhh
Confidence 44555 355666666666665 3432 333 24556666654432 1221 135665 599999888
Q ss_pred hhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 154 SNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
......+...|++++.+++ + .++.+|+++|++++..+..++.++++.+|++-.+. .+++++|+++|+++|+++++
T Consensus 601 ~snp~sa~~~G~~vv~v~~-d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~---e~~I~eI~~i~h~~G~~v~V 675 (954)
T PRK05367 601 GTNPASAVMAGMKVVVVAC-D-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVF---EETIREICEIVHEHGGQVYL 675 (954)
T ss_pred hhhHHHHHHCCCEEEEECC-C-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeee---cCCHHHHHHHHHHcCCEEEE
Confidence 7777778899999999987 2 34689999999999754345777777666554222 24577999999999999999
Q ss_pred eccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc----cCCcccEEEEEecChhHHHHHHHHHHHHh-----h
Q 013839 234 DMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL----YGHRVGCLSILCVDSKQAAAIRSQIQQIA-----R 304 (435)
Q Consensus 234 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~----~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-----~ 304 (435)
|.++..-... .. . +...+-+++..+..|.|+. .|-.+|.+.+ .+. +...+.... .
T Consensus 676 DgA~~~al~~-l~-~-------pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~v---r~~----l~p~lpg~~v~~~~~ 739 (954)
T PRK05367 676 DGANMNAQVG-LA-R-------PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGV---KAH----LAPFLPGHPVQIAGG 739 (954)
T ss_pred ECcChhhccC-CC-C-------hhhcCCCEEEecCcccCCCCcCCCCCceEEEee---ccc----ccccCCCCccCcCCC
Confidence 9996322111 10 0 1112346788889999753 3444677753 333 332222111 0
Q ss_pred ---ccccCCChhHHHH----HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-----Cccee
Q 013839 305 ---AMYGSPPVHGILL----VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-----QLGMF 372 (435)
Q Consensus 305 ---~~~~~~~~~~q~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~g~~ 372 (435)
......+.++|.. +..++..-+ .+.+++..++...+.+++.+.|++. ++ +.+..+ ...++
T Consensus 740 ~~~~g~v~ta~~g~al~~~~a~~yi~~~G-----~~Glr~~a~~~~~~A~Yl~~~L~~~-~~--~~~~~~~~~~~~e~i~ 811 (954)
T PRK05367 740 ETGIGAVSAAPFGSASILPISWMYIRMMG-----AEGLRQATEVAILNANYIAKRLKDH-YP--VLYTGANGRVAHECIL 811 (954)
T ss_pred CCCcCcchhHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHhh-cC--ccccCCCCCcccceEE
Confidence 0111112221211 111111111 1445555566667888888888764 21 212111 12233
Q ss_pred Eec------CCCHHHHHHHhhhccEEEeC-----CC--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 373 CFS------GLTPYQVDRLAKEFHIYMTQ-----DG--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 373 ~~~------~~~~~~~~~ll~~~gI~i~p-----gg--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
-+. +.+.+.+.+.|.++|+.... .| |++..- .+.+++++++++|+++.++..+
T Consensus 812 ~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 812 DLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred EeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 332 23445554444678887643 13 776543 2778999999999888776553
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-09 Score=100.95 Aligned_cols=330 Identities=15% Similarity=0.104 Sum_probs=193.0
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
.-.|||-+-.- ...|++.+++++.. + ...|..+.....|.+.+++.+ |.. ..+ .|..|.++
T Consensus 41 dV~IDLrSDTg-----T~apS~~m~aAM~~---G-DD~Y~gdpSv~~Lee~vael~-G~E-------~al--pthqGRga 101 (467)
T TIGR02617 41 DVFIDLLTDSG-----TGAVTQSMQAAMMR---G-DEAYSGSRSYYALAESVKNIF-GYQ-------YTI--PTHQGRGA 101 (467)
T ss_pred CeEEECccCCC-----CCCCCHHHHHHHHc---C-CcccccCchHHHHHHHHHHHh-CCc-------eEE--ECCCCchH
Confidence 45566655441 12366666665554 4 344888777889999999887 542 233 79999999
Q ss_pred HHHHHHHHHHhC-CCCEEEEcCC-------CChh-hHHHHhhCCCCeeeeeec--------CCCCCCcChHhHHHHhhcC
Q 013839 130 CRLFAEFQRRFH-PESHIYFPDP-------TWSN-HHNIWRDAQIPERTYHYY--------DPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 130 ~~~~~~~~~~~~-~gd~Vlv~~p-------~y~~-~~~~~~~~g~~~~~v~~~--------~~~~~~~d~e~l~~~i~~~ 192 (435)
..++ +..++. |||++.+..+ .+.. ........|+.++.++.. .+..+.+|++++++.+.+.
T Consensus 102 E~Il--~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~ 179 (467)
T TIGR02617 102 EQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEV 179 (467)
T ss_pred HHHH--HHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhc
Confidence 8887 666677 7887775443 2222 234567788887765321 1234689999999999853
Q ss_pred C-CCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC----c------cCCCCcccHHHH-HHhhhcC
Q 013839 193 P-DSSFFLLHPSAHN-PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG----F------ASGDLDKDAQAI-RIFLEDE 259 (435)
Q Consensus 193 ~-~~~~~v~~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~----~------~~~~~~~~~~~~-~~~~~~~ 259 (435)
. .+...+.+.--+| --|..+|.+.++++.++|++||+.++.|.+-.. | .+.+ .+...+ +....
T Consensus 180 g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~--~si~eI~rE~~~-- 255 (467)
T TIGR02617 180 GPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN--WSIEQITRETYK-- 255 (467)
T ss_pred CCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC--CCHHHHHHHhhc--
Confidence 2 1111221111123 358899999999999999999999999987311 1 1211 112222 11112
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-----hccccCCChhHHHHHHHHhCChhhHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-----RAMYGSPPVHGILLVATILSDPNLKSLWIDE 334 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~ 334 (435)
.-+.+..|+||.++.| +|.+++ .++++ +..+..+.+... ...+.+.+.-...+++.-|.+.- . .++
T Consensus 256 ~aDsvt~slsKglgAp---vGg~La-g~d~~-~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~-~---~~y 326 (467)
T TIGR02617 256 YADMLAMSAKKDAMVP---MGGLLC-FKDDS-FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-N---LDW 326 (467)
T ss_pred cCCEEEEEcCCCCCCc---ccceEE-ecchh-HHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc-c---HHH
Confidence 2345677899998766 344442 43442 212434333321 12344566666666655554321 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-------C-----C-HHHHHHHhhhccEEEeCCC----
Q 013839 335 VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG-------L-----T-PYQVDRLAKEFHIYMTQDG---- 397 (435)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~-------~-----~-~~~~~~ll~~~gI~i~pgg---- 397 (435)
+.. |.. ..++|.+.|.+.|.| +.. .||--++++ + . ..++..|..+.||-...-|
T Consensus 327 l~~---ri~-qv~yl~~~L~~~Gvp----i~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~ 397 (467)
T TIGR02617 327 LAY---RIN-QVQYLVNGLEEIGVV----CQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLL 397 (467)
T ss_pred HHH---HHH-HHHHHHHHHHhCCCc----EEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceec
Confidence 222 222 236778888888865 444 444333342 2 1 2345666677888765321
Q ss_pred -----------------cEEecc--CCCCcHHHHHHHHHHHHHh
Q 013839 398 -----------------RISMAG--VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 -----------------Ris~~~--~~~e~i~~~~~~l~~~l~~ 422 (435)
|+.+.. .|.+.+++..++|..+.++
T Consensus 398 ~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred ccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 777643 2778899999999988764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-10 Score=108.83 Aligned_cols=241 Identities=17% Similarity=0.117 Sum_probs=153.2
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH-HhC--C---C------CEEEEcCCCChhhHHHH
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR-RFH--P---E------SHIYFPDPTWSNHHNIW 160 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~-~~~--~---g------d~Vlv~~p~y~~~~~~~ 160 (435)
+..++-+.+..++...-.. ++...+.+|.|||+|+.++..... .+. . + -+|+++.-.+..+...+
T Consensus 98 ~a~~~E~~~v~~l~~l~~~---~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa 174 (460)
T COG0076 98 AAAELEERVVNMLSDLLGA---PEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174 (460)
T ss_pred hHHHHHHHHHHHHHHHhCC---CCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH
Confidence 4556777777766322222 245567789999999987752222 221 1 1 16888888889999999
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEE--EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFF--LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ 238 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~--v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~ 238 (435)
+..|+....+++. ..++.+|++++++++.+. +.. |+-..+..|||.+ +++++|.++|+++++++.+|.||.
T Consensus 175 ~~lG~~~~~v~~~-~~~~~id~~~l~~~i~~~---t~~g~vV~~aGtT~~G~i---Ddi~~ia~ia~~~~i~lHVDAA~G 247 (460)
T COG0076 175 RYLGLGLRRVPTV-PTDYRIDVDALEEAIDEN---TIGGVVVGTAGTTDTGSI---DDIEELADIAEEYGIWLHVDAAFG 247 (460)
T ss_pred HHhCCCceeEEec-cCccccCHHHHHHHHHhh---ccCceEEEEecCCCCCcc---CCHHHHHHHHHHcCCcEEEEcccc
Confidence 9999999999984 337899999999999843 333 7777788899865 778899999999999999999998
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-----ccccCCCh-
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-----AMYGSPPV- 312 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~- 312 (435)
++...-.+.+.. -......-.=+.-++.|.+. .-..+||+. ..+++.+.+....-..+.. ..+...+.
T Consensus 248 G~~~pf~~~~~~---~~f~l~~vdSIt~d~HK~g~-aP~~~G~il--~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~ 321 (460)
T COG0076 248 GFLLPFLEPDGR---WDFGLEGVDSITVDGHKYGL-APIGCGVVL--FRDEEALRRILIFADYYLPGGGIPNFTILGSRP 321 (460)
T ss_pred ceeecccCccch---hhcCCCCceEEEECcccccC-CCCCceEEE--EECHHHhhhhhhcccccCCCCCcCceeEeeccc
Confidence 876421111111 00122223345568999965 557789996 3466322221111111111 11111122
Q ss_pred ----hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 313 ----HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 313 ----~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+++....+.. +..+++.++..++.+++.+.+++.|
T Consensus 322 ~~~~~~~~~~l~~lG~--------eGy~~l~~~~~~~a~~la~~l~~~~ 362 (460)
T COG0076 322 GRQALALYANLRRLGR--------EGYRKLLDRTLELARYLAEELEKLG 362 (460)
T ss_pred hHHHHHHHHHHHHhCH--------hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 222333333321 4566777777888899999999886
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-09 Score=97.28 Aligned_cols=180 Identities=18% Similarity=0.162 Sum_probs=110.4
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHHH----------
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNIW---------- 160 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~~---------- 160 (435)
.|-..|-+..|+. ++. ++-++-....+||+|+.++ +..+++|||+.+... .-|.....++
T Consensus 54 ~GRd~le~iyA~v-fga------E~ALVRpq~vSGTHAi~~~--Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL 124 (403)
T PF06838_consen 54 IGRDKLERIYADV-FGA------EDALVRPQFVSGTHAIALA--LFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSL 124 (403)
T ss_dssp HHHHHHHHHHHHH-CT-------SEEEEETTS-SHHHHHHHH--HHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSST
T ss_pred ccHHHHHHHHHHH-hCc------hhhhhcccccchHHHHHHH--HHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCCh
Confidence 3544444444444 454 2334444567999999888 899999999998554 4555555554
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccC
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP-SAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAY 237 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~-~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay 237 (435)
...|.+...+++ .+++.+|++.++++++ ++++++.+- +...-+=-.++.++++++++++|+ -++++++|.+|
T Consensus 125 ~e~Gi~Y~~v~L--~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCY 199 (403)
T PF06838_consen 125 KEFGIKYREVPL--TEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCY 199 (403)
T ss_dssp GGGT-EEEE--B---TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TT
T ss_pred HHhCceeEEEee--cCCCCcCHHHHHHhhc---cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence 456777888888 4557899999999999 778888773 333334445788999999999997 47999999999
Q ss_pred CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc--ccEEEEEecChhHHHHHHHHH
Q 013839 238 QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR--VGCLSILCVDSKQAAAIRSQI 299 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R--vG~~~~~~~~~~~~~~~~~~l 299 (435)
.+|.... + +. .-.-+++.+|+=|+.| .|+- -||+++ .+++++....++
T Consensus 200 GEFvE~~-E----P~-----~vGADl~aGSLIKNpG-GgiAptGGYIaG---r~~lVe~~a~RL 249 (403)
T PF06838_consen 200 GEFVETQ-E----PT-----EVGADLMAGSLIKNPG-GGIAPTGGYIAG---RKDLVERAAYRL 249 (403)
T ss_dssp TTTTSSS------GG-----GGT-SEEEEETTSGGG-TTT-SS-EEEEE---SHHHHHHHHHHH
T ss_pred ceecccc-C----cc-----ccchhheeccceeCCC-CCccCcCCEEec---hHHHHHHHHhhh
Confidence 9998652 1 11 1134788999999976 4432 378864 888444443333
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-09 Score=99.67 Aligned_cols=260 Identities=17% Similarity=0.104 Sum_probs=151.3
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEE--EcCCCChh-hHHHHhhCCCCeeeeeecCC--CCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIY--FPDPTWSN-HHNIWRDAQIPERTYHYYDP--DSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vl--v~~p~y~~-~~~~~~~~g~~~~~v~~~~~--~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+..||+++++.+ .+.++.+||+++ +....|+. +...++.+| ++..+..... .+..++++++ .+. ++.
T Consensus 73 l~GggT~~~ea~--~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~---~d~ 144 (364)
T PRK12462 73 LQGGSSLQFSMI--PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWD---ARA 144 (364)
T ss_pred EeccHHHHHHHH--HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccC---CCC
Confidence 456689998888 888889999655 44444432 234555666 5443321011 1134445554 122 356
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
+.+.+++....||+..+ ++.+.++.++|+|.+ +.+.-.+. .+ .+..++..|..|++|.||
T Consensus 145 ~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~s-S~~~s~pi-----d~------~~~dvi~agsQKnlgP~G 204 (364)
T PRK12462 145 PFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMS-SDFMSRPF-----DV------EAYGMVYAHAQKNLGPAG 204 (364)
T ss_pred cEEEEccCCCCceEecC--------cccccCCCeEEEEcC-chhhCCCC-----Ch------HHccEEEeeccccCCCCc
Confidence 77877777778888875 223346899999998 44432222 11 123677888999999887
Q ss_pred CcccEEEEEecChhHHHHHHHH------HHHHh--hccccCCChhHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQ------IQQIA--RAMYGSPPVHGILLVATILSDPNLKSLWID--EVKIMADRIQRKR 346 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~------l~~~~--~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~ 346 (435)
+ +.+++ +++.+++.... ++... ...+.+||....+++...|+-- .++ .++.+.++.+++.
T Consensus 205 l--tvviv---s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i-----~~e~GGl~~~~~r~~~ka 274 (364)
T PRK12462 205 V--TVAII---RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWI-----RDEIGGVHAMRDINARKA 274 (364)
T ss_pred e--EEEEE---CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHH-----HHhccCHHHHHHHHHHHH
Confidence 4 44543 77754432111 11111 1344567777777776665421 124 5788889999999
Q ss_pred HHHHHHHHhhC-CCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeCC-----C-cEEecc-CCCCcHHHHH
Q 013839 347 TTLRQNLEKLG-SSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD-----G-RISMAG-VTTGNVNYLA 413 (435)
Q Consensus 347 ~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg-----g-Ris~~~-~~~e~i~~~~ 413 (435)
+.+++.++... +...........-+-+...+ +.+++..+ +++|+.-..| | |+|+.+ ++.|.++.++
T Consensus 275 ~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a-~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~ 353 (364)
T PRK12462 275 AMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPRLDTLFKEQS-TEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLC 353 (364)
T ss_pred HHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHHHHHHHHHHH-HHCCCccccCCcccCceEEEcCCCCCHHHHHHHH
Confidence 99999998875 21111111111222233222 33444444 6789999877 3 999765 3666666666
Q ss_pred HHHHHHH
Q 013839 414 NAIHEVT 420 (435)
Q Consensus 414 ~~l~~~l 420 (435)
+-++++-
T Consensus 354 ~fm~~f~ 360 (364)
T PRK12462 354 AFLKDFA 360 (364)
T ss_pred HHHHHHH
Confidence 6665553
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-08 Score=102.59 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=124.5
Q ss_pred HhHHHHhhc-----CCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 183 AALMDDIKN-----APDSSFFLLHPS-AHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 183 e~l~~~i~~-----~~~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+.+++.+.+ .+++..++++.. .+.-.|+.+ ++..++++.++|++||+++|.||+..+|+-.+ ..+....+
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG---~~fa~e~~ 643 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG---VESAWELL 643 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc---chhhHHhc
Confidence 456666653 234567777755 367778876 67889999999999999999999999997654 12233222
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH------HhhccccCCChhHHHHHHHHhCChhhH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ------IARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
+....++ +++|.++ .| +.+|.+++ +++ +.+.+.. .....+++.++++..++.+.|+.-.
T Consensus 644 -gv~PDIi---~~gKgLt-gG~~Plaa~l~---~~~----I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~-- 709 (817)
T PLN02974 644 -GCKPDIA---CYAKLLT-GGLVPLAATLA---TEE----VFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK-- 709 (817)
T ss_pred -CCCCCEE---eeccccc-CCCCccEEEEE---cHH----HHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHH--
Confidence 2222233 4799998 78 58888864 778 7666642 1123456677777777666654211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhCCCCCccccccCcceeEecCC---------C---HHHH-HHHhhhccE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQN----LEKLGSSLNWEHITNQLGMFCFSGL---------T---PYQV-DRLAKEFHI 391 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~g~~~~~~~---------~---~~~~-~~ll~~~gI 391 (435)
+ .+......+..++..+.+.+. +++++. +......| ++.-+.+ + ...+ ..++.++||
T Consensus 710 ~--~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~---V~~VRg~G-l~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl 783 (817)
T PLN02974 710 D--PSTNPNLIPPGSRLRELWDEELVRAISSLPN---VERVVSLG-TVLALELDAEGSGSGYSSLYARSVVRRLRREDGI 783 (817)
T ss_pred c--ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---eeEEEeee-eEEEEEEecCCcccccchHHHHHHHHHHHHhCCE
Confidence 0 011122223333333333333 333331 22222333 2322211 0 1233 444427899
Q ss_pred EEeCCC---cEE-eccCCCCcHHHHHHHHHHHH
Q 013839 392 YMTQDG---RIS-MAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 392 ~i~pgg---Ris-~~~~~~e~i~~~~~~l~~~l 420 (435)
.++|.| |+. ....+++++++++++|.+.+
T Consensus 784 ~~r~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 784 YARPLGNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999976 543 22347899999999987764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-08 Score=97.90 Aligned_cols=247 Identities=14% Similarity=0.049 Sum_probs=146.5
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCC-cc--------ccCCCeeeEecCCchhHHHHHHHHHHH--hC-------------
Q 013839 86 LESISASVSTKMVEESVKLVYGKDS-DV--------VKEGRSAGVQALSGTGACRLFAEFQRR--FH------------- 141 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~-~~--------~~~~~v~~~~t~gg~~a~~~~~~~~~~--~~------------- 141 (435)
..|..+....++-+.+.+|+...-+ .+ -.++.-.+.+|+||+.|+..+.....- +.
T Consensus 119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl 198 (522)
T TIGR03799 119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL 198 (522)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence 3344445556777777777622110 00 012233466899999998776522221 11
Q ss_pred ---------CCCEEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCC
Q 013839 142 ---------PESHIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHN 206 (435)
Q Consensus 142 ---------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~N 206 (435)
++..|++.+-.+......++..|. +++.+|+ .+++.+|++.|++.+.+. ..++.+|+-+..++
T Consensus 199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~--d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt 276 (522)
T TIGR03799 199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT--DANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT 276 (522)
T ss_pred hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe--CCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence 134678888788778778888887 6888888 345799999999998632 22334444446677
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
.||.+-+ +++|.++|+++|+++.+|.+|.....-. ...+.. .+...-+.+..+..|.++.| ..+|.+.
T Consensus 277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~-----~~~r~~l~gle~aDSit~d~HK~l~~P-~g~G~ll-- 345 (522)
T TIGR03799 277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLS-----NTYRHLLKGIERADSVTIDAHKQLYVP-MGAGMVL-- 345 (522)
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhC-----HHHHHHhcCchhCCEEEEChhhcCCcC-cccEEEE--
Confidence 8998765 5599999999999999999986543210 112121 12223467788999965423 4467775
Q ss_pred ecChhHHHHHHHHHHHHhhc-------------cccCCChh--HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 286 CVDSKQAAAIRSQIQQIARA-------------MYGSPPVH--GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~--~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
..+++ ..+.+.....+ .-.+-+.. ..+++...+. .+..+++.++..++++++.
T Consensus 346 vr~~~----~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG--------~~G~~~ii~~~~~la~~l~ 413 (522)
T TIGR03799 346 FKDPA----LMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG--------RKGYELLIDQSIEKAKYFA 413 (522)
T ss_pred EeCHH----HHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHH
Confidence 33555 33333221000 00111111 1122222232 1456777788888889999
Q ss_pred HHHHhhC
Q 013839 351 QNLEKLG 357 (435)
Q Consensus 351 ~~l~~~~ 357 (435)
+.+++.+
T Consensus 414 ~~L~~~~ 420 (522)
T TIGR03799 414 DLIQQQP 420 (522)
T ss_pred HHHhhCC
Confidence 9998764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-08 Score=92.22 Aligned_cols=334 Identities=13% Similarity=0.111 Sum_probs=192.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|+..|...-.-|... ++++..+.+++. ......|... -..++.++++..+-+. -..+. ++++
T Consensus 48 ~G~ryLD~f~Gi~tvslGHch-P~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~P~~------l~~vf--F~ns 117 (442)
T KOG1404|consen 48 EGRRYLDAFGGIVTVSLGHCH-PDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKLPGD------LKVVF--FVNS 117 (442)
T ss_pred CCceeehhhCCeEEEEcCCCC-hHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhCCCC------ceEEE--EecC
Confidence 456777777775322222222 234444555553 1123335442 2457888888887332 12344 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-HhhCCCCeeeeee----------cCCCC----CCcC---------
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WRDAQIPERTYHY----------YDPDS----KSLD--------- 181 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~----------~~~~~----~~~d--------- 181 (435)
|++|++++..+..+....-.++....+|.+.... +...|......+. ..++- |+=+
T Consensus 118 GsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~ 197 (442)
T KOG1404|consen 118 GSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRY 197 (442)
T ss_pred CchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHH
Confidence 9999999975555544444566666677555433 2222222111110 00000 1111
Q ss_pred hHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 182 FAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 182 ~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
.+++++.+... +....+++....+--.|++- ++-.+++..+.|+++|.+.|.||+..+|+..+ ..|...+.
T Consensus 198 a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG---~~wgfe~h---- 270 (442)
T KOG1404|consen 198 AKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG---HMWGFESH---- 270 (442)
T ss_pred HHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc---cccccccc----
Confidence 14455555433 34456777666666667654 66789999999999999999999998888764 23443222
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIM 338 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~ 338 (435)
+-+==+-|++|.+| .|..+|.++. .++ +.+-+.+.. ...+.+.++++..+..+.|+--. .+++
T Consensus 271 ~v~PDIvTmAKgiG-nG~Pl~AVvt---t~E----Ia~v~~~~~~~fnTyggnP~a~avg~aVL~Vik--------ee~L 334 (442)
T KOG1404|consen 271 GVVPDIVTMAKGIG-NGFPLGAVVT---TPE----IADVLNQKSSHFNTYGGNPVACAVGLAVLKVIK--------EENL 334 (442)
T ss_pred CCCccHHHHHhhcc-CCCcceeeec---CHH----HHHHHHhccccccccCCCchhHHHHHHHHHHHH--------HHhH
Confidence 21222558999999 8899999963 777 888887766 45566677776666666665321 2344
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccC--cceeEecCC--------C-----HHHHHHHhhhccEEEeCCC------
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFSGL--------T-----PYQVDRLAKEFHIYMTQDG------ 397 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~~--------~-----~~~~~~ll~~~gI~i~pgg------ 397 (435)
.++.++...+|.+.|.++.. ....+... -|.++=+.+ . ...+..-.++.|+.+-.||
T Consensus 335 qE~aa~vG~yl~~~l~~l~d--~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vf 412 (442)
T KOG1404|consen 335 QENAAEVGSYLLEKLAALKD--KHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVF 412 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEE
Confidence 55566666777777766532 11222222 233332211 0 1234333467999996665
Q ss_pred cEEec-cCCCCcHHHHHHHH
Q 013839 398 RISMA-GVTTGNVNYLANAI 416 (435)
Q Consensus 398 Ris~~-~~~~e~i~~~~~~l 416 (435)
||+.. ..|.+|++.+++..
T Consensus 413 riaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 413 RIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EecCCeeccHHHHHHHHHHH
Confidence 88742 24889997777655
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-09 Score=100.15 Aligned_cols=254 Identities=13% Similarity=0.037 Sum_probs=134.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.-...-|. ..++..+++.+++... .. ........+...++++.+...-.. .-+++. ++++|+
T Consensus 14 dG~~~lD~~~~~~~~~lGh-~~p~i~~ai~~~~~~~-~~-~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~--f~~sGs 86 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGH-NHPEIAEAIAEQANKL-NY-VSFSGFTHPEAAELAEKLAELFPG--GLDRVF--FANSGS 86 (339)
T ss_dssp TSEEEEESSHHHHTTTT-B-T-HHHHHHHHHHHHHC-SS-CSTTTSEEHHHHHHHHHHHHHSST--TEEEEE--EESSHH
T ss_pred CCCEEEECCCCccceecCC-CccccchhHHHHhhhc-cc-ccccceeccchhhhhhhhhhcccc--ccceee--eccCch
Confidence 5678999987742111221 1223333333333321 11 111112223344444444211100 024666 899999
Q ss_pred hHHHHHHHHHH------HhCCCCEEEEcCCCChhhHHHHhh-CC---------C---CeeeeeecCCCC---CCcChHhH
Q 013839 128 GACRLFAEFQR------RFHPESHIYFPDPTWSNHHNIWRD-AQ---------I---PERTYHYYDPDS---KSLDFAAL 185 (435)
Q Consensus 128 ~a~~~~~~~~~------~~~~gd~Vlv~~p~y~~~~~~~~~-~g---------~---~~~~v~~~~~~~---~~~d~e~l 185 (435)
+|++.++.+.. ....-.+|+....+|.+....... .+ . .+..+|..+... ..-..+.+
T Consensus 87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 166 (339)
T PF00202_consen 87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNAL 166 (339)
T ss_dssp HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHH
Confidence 99999975554 222337899999898765432221 11 1 123333311000 00001112
Q ss_pred HHHhhc-CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 186 MDDIKN-APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 186 ~~~i~~-~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++.+.+ ..++..++++...+...|... +++.+++|.++|++||+++|.||+..++...+. .+....+ +....++
T Consensus 167 ~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~---~~a~~~~-gv~PDiv 242 (339)
T PF00202_consen 167 EELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK---FFASEHY-GVDPDIV 242 (339)
T ss_dssp HHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS---SSGHHHH-TSSSSEE
T ss_pred HHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC---ccceecc-cccCccc
Confidence 322221 125567777766665566655 677899999999999999999999998865442 1222222 3223333
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
+ ++|.++ .|+.+|.+++ +++ +.+.+.......+.+.++++..++.+.|+
T Consensus 243 ~---~gK~l~-gG~p~sav~~---~~~----i~~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 243 T---FGKGLG-GGLPISAVLG---SEE----IMEAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp E---EEGGGG-TTSSEEEEEE---EHH----HHTTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred c---cccchh-hhhhcccccc---cch----hhccccccccccccccchHhhhhhhhHHH
Confidence 3 579998 7799998864 777 66655443334556666777777666664
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=93.83 Aligned_cols=328 Identities=12% Similarity=0.015 Sum_probs=188.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++++++||+..+....-+.....+.....++... .+....|+..+-+-.+-+.||+++ |. ++.++ -
T Consensus 91 i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~-G~------E~aiv---Y 160 (467)
T KOG1358|consen 91 IDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM-GT------EDAIV---Y 160 (467)
T ss_pred ecCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh-CC------cceee---e
Confidence 46788999999987454333333344344444442 234556888777889999999998 43 23343 4
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-------C--
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-------D-- 194 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-------~-- 194 (435)
+-|-.++..+ +-+++..||.+.+..-........++...-.+.++- .+ |.++++..+.+.. +
T Consensus 161 s~gF~ti~S~--ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fk---hn----dm~~lerll~E~~~~~~K~~k~~ 231 (467)
T KOG1358|consen 161 SYGFSTIESA--IPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFK---HN----DMEDLERLLPEQEDEDQKNPKKA 231 (467)
T ss_pred ccccchhhhc--chhhhccCcEEEEehhhhHHHHHHHhhhhheeEEec---CC----CHHHHHHhccCcchhhhhccccc
Confidence 4454455545 666788999998888666666555555444444442 22 6777776654321 1
Q ss_pred C-cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh--hhcCCeEEEEeccccc
Q 013839 195 S-SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF--LEDEHLIGCAQSYAKS 271 (435)
Q Consensus 195 ~-~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~SK~ 271 (435)
. .+.+++.----+||.+.+. .+|+++..+|...+|.||.|+.-..+. ....+... .+..+-+++++|++-+
T Consensus 232 ~~Rrfiv~EGl~~N~g~i~pl---~~iv~lk~Kyk~RvildEs~SfG~lg~---~GrGvteH~~v~~~~iDiv~~sm~~a 305 (467)
T KOG1358|consen 232 LTRRFIVVEGLYANTGDICPL---PEIVKLKNKYKFRVILDESLSFGVLGK---TGRGVTEHFGVPITDIDIVTASMETA 305 (467)
T ss_pred cceEEEEEEeeccCCCccccc---HHHHHHHhhheEEEEEecccccccccc---cCccccccCCCCccceeeeeeccccc
Confidence 1 3556666666788888764 489999999999999999976544331 11122111 1234567899999998
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc---ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM---YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
++..| |++++ +. ++-..+++.... ..+.|+....++..++.-. +......+.++.....
T Consensus 306 las~G---gFc~G---~~-----~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~-------~~~p~~~~~L~~k~~~ 367 (467)
T KOG1358|consen 306 LASGG---GFCAG---KS-----FIADHQRLSGSGYCFSASLPPYLAGAAIKAILIE-------EWNPEIVQPLRAKVAK 367 (467)
T ss_pred ccccC---ceeec---ce-----eeEeeeeccccceeeeccCchhhhhhHHHHHHHH-------hhCcchhhhhhccccc
Confidence 88666 78853 33 333344433221 1223333333333333211 2222344445555555
Q ss_pred HHHHHHhhCCCCCccccccCcceeEecCC-----C--------HHHHHHHhhhccEEEeCC-------------C-cEEe
Q 013839 349 LRQNLEKLGSSLNWEHITNQLGMFCFSGL-----T--------PYQVDRLAKEFHIYMTQD-------------G-RISM 401 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~--------~~~~~~ll~~~gI~i~pg-------------g-Ris~ 401 (435)
+...|+.... +.+....-+....+.+ + .+.+.+.+.+ |+.++.. + ||++
T Consensus 368 ~H~~l~~~s~---~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~ 443 (467)
T KOG1358|consen 368 FHAALSSNSG---FIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICV 443 (467)
T ss_pred cchhhhcCCc---eEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEE
Confidence 5556654311 2222222222333322 1 1344555554 7777643 1 8987
Q ss_pred c-cCCCCcHHHHHHHHHHHHH
Q 013839 402 A-GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 402 ~-~~~~e~i~~~~~~l~~~l~ 421 (435)
. .+++|+++++.+.|++...
T Consensus 444 ~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 444 SAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred eCCCCHHHHHHHHHHHHHHHH
Confidence 4 4588999999988887654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-07 Score=99.87 Aligned_cols=275 Identities=11% Similarity=0.020 Sum_probs=157.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCC--CEEEEcCCCChhhHHHHh----hCCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPE--SHIYFPDPTWSNHHNIWR----DAQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~g--d~Vlv~~p~y~~~~~~~~----~~g~~ 166 (435)
+.++++.++++. |.+ .+++. ++.++|.+.+.+ +++. +.+| |+|++++-.|+.+...++ ..|++
T Consensus 150 l~~~Qt~ia~Lt-G~~-----~anaS--L~d~aTAaaea~--~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~Gie 219 (993)
T PLN02414 150 LLNYQTMITDLT-GLP-----MSNAS--LLDEGTAAAEAM--AMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLE 219 (993)
T ss_pred HHHHHHHHHHHh-CCC-----hhhEe--ecCChHHHHHHH--HHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCE
Confidence 456666777776 554 45777 899999998877 4333 4544 789999999988876654 46888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++.. .. + ... .....+++..| |-+|.+.+ +++|++.|+++|+++++ .+ +.+......
T Consensus 220 V~~v~~~-~~----~------~~~---~~v~~vlvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aa-d~lal~~l~ 279 (993)
T PLN02414 220 VVVADEK-DF----D------YSS---GDVCGVLVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-AT-DLLALTMLK 279 (993)
T ss_pred EEEecch-hh----c------ccc---CceEEEEEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EE-CHHHhcCCC
Confidence 8887752 11 1 111 23334444222 34898864 66999999999999999 33 233332211
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccc---cccCCcccEEEEEecChhHHHHHHHHHH-HHhh------------------
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSM---GLYGHRVGCLSILCVDSKQAAAIRSQIQ-QIAR------------------ 304 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~---g~~G~RvG~~~~~~~~~~~~~~~~~~l~-~~~~------------------ 304 (435)
+ +..-+-+|++++..|.. |..|-+.|++.+ .++ +...+- .+..
T Consensus 280 ----~----pge~GADi~vgsgqKwg~P~G~GGP~aGflav---r~~----~~r~~PgriVG~s~d~~g~~~~~l~LqtR 344 (993)
T PLN02414 280 ----P----PGEWGADIVVGSAQRFGVPMGYGGPHAAFLAT---SQE----YKRLMPGRIIGVSVDSSGKPALRMAMQTR 344 (993)
T ss_pred ----C----HhhccCcEEEECCCccccCCCCCCCCeeEEEE---CHH----HHhhCCCcccCcccCCCCCcccccccccc
Confidence 1 12224577788888886 334566888863 555 322221 0000
Q ss_pred -----ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEec-CC
Q 013839 305 -----AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFS-GL 377 (435)
Q Consensus 305 -----~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~-~~ 377 (435)
.-..+.+.-+..++.+.+..-....+-...++++.++..++..++.+.|+..|. .... +..+.+.+- +
T Consensus 345 eqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~----~~~~~~~f~~vt~~~~- 419 (993)
T PLN02414 345 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGF----QVQSLPFFDTVKVKCS- 419 (993)
T ss_pred cchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCC----ccCCCCCcCeEEEecC-
Confidence 000111111111221222100000000144677788899999999999988763 2322 222223222 2
Q ss_pred CHHHHHHHhhhccEEEeCC--C--cEEeccC-CCCcHHHHHHHHHH
Q 013839 378 TPYQVDRLAKEFHIYMTQD--G--RISMAGV-TTGNVNYLANAIHE 418 (435)
Q Consensus 378 ~~~~~~~ll~~~gI~i~pg--g--Ris~~~~-~~e~i~~~~~~l~~ 418 (435)
+.+.+.+.|.++||.++.. + |+|+... +++||+.+++.|+.
T Consensus 420 ~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 420 DADAIADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred CHHHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 3444544446789988643 2 8886433 77889999999863
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-07 Score=98.91 Aligned_cols=270 Identities=13% Similarity=0.082 Sum_probs=157.1
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCC--CEEEEcCCCChhhHHHH----hhCCCCe
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPE--SHIYFPDPTWSNHHNIW----RDAQIPE 167 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~g--d~Vlv~~p~y~~~~~~~----~~~g~~~ 167 (435)
.++++.+++.. |.+ ..++. +..+++.+.+.+ ++++ +.++ |+|++++-.|+.....+ +..|+++
T Consensus 124 ~~~Qt~la~Lt-G~~-----~anaS--l~d~aTAa~ea~--~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev 193 (954)
T PRK05367 124 LNFQTMVADLT-GLE-----IANAS--LLDEATAAAEAM--ALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEV 193 (954)
T ss_pred HHHHHHHHHHH-CCC-----hhhcc--ccccHHHHHHHH--HHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEE
Confidence 34455555554 554 44666 788999888877 3333 4554 89999999998887654 5679999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.++.. + |.+ . .++..+++.+| |-+|.+. ++++|++.|+++|+++++|.....+... .
T Consensus 194 ~~~~~~-~-----d~~------~---~~~~~vlvq~p-~~~G~i~---d~~~i~~~ah~~Gal~~vda~~~Al~~l---~ 251 (954)
T PRK05367 194 VVGDAA-K-----ALD------H---DDVFGVLLQYP-GTSGEVR---DYTALIAAAHARGALVAVAADLLALTLL---T 251 (954)
T ss_pred EEecCc-c-----CCC------c---ccEEEEEEecC-CCCeeec---cHHHHHHHHHHcCCEEEEEehhhhccCC---C
Confidence 888762 2 111 1 34555666554 6788876 4779999999999999998643222221 1
Q ss_pred cHHHHHHhhhcCCeEEEEecccccc---cccCCcccEEEEEecChhHHHHHHHHHHHH-h--------------------
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSM---GLYGHRVGCLSILCVDSKQAAAIRSQIQQI-A-------------------- 303 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~---g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-~-------------------- 303 (435)
+ ++.-+-+|++++..|.. |+.|-..|++.+ .++ +...+.-. .
T Consensus 252 ~-------pge~GaDi~vgs~qkfg~P~g~GGP~aGflav---r~~----~~r~lpgrivG~s~d~~g~~~~~lalqtRe 317 (954)
T PRK05367 252 P-------PGEMGADIAVGSAQRFGVPMGFGGPHAAYFAV---RDA----YKRSMPGRIVGVSVDAAGNPALRLALQTRE 317 (954)
T ss_pred C-------hhhcCCCEEEeeCcccCCCCCCCCCCEEEEEE---CHH----HHhhCCCCeeeeecccCCCccccccccccc
Confidence 1 12234578888888871 223444788853 555 33332100 0
Q ss_pred ---h--ccccCCChh-HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-CcceeEe-c
Q 013839 304 ---R--AMYGSPPVH-GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-QLGMFCF-S 375 (435)
Q Consensus 304 ---~--~~~~~~~~~-~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~-~ 375 (435)
+ ..+++..+. ...++.+.+- +..+-...++++.++...+..++.+.|+..|. ....+ ..+.+.+ .
T Consensus 318 qhiRrekaTsNict~qaL~a~~a~~y---~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~----~~~~~~~f~~~~~~~ 390 (954)
T PRK05367 318 QHIRREKATSNICTAQVLLAVMASMY---AVYHGPEGLKAIARRVHRLAAILAAGLRALGL----EVVHDSFFDTLTVEV 390 (954)
T ss_pred ccccccccccccchHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCc----ccCCCCCCCeEEEeC
Confidence 0 011111111 0111111100 00011256788888899999999999987664 22211 1122221 1
Q ss_pred CCCHHHHHHHhhhccEEEeCC--C--cEEeccC-CCCcHHHHHHHHH
Q 013839 376 GLTPYQVDRLAKEFHIYMTQD--G--RISMAGV-TTGNVNYLANAIH 417 (435)
Q Consensus 376 ~~~~~~~~~ll~~~gI~i~pg--g--Ris~~~~-~~e~i~~~~~~l~ 417 (435)
+.+.+.+.+.|.++||.+..- + |+|+... ++++|+.+++.|.
T Consensus 391 ~~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 391 GGDAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred CCCHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 225555544446789988543 2 8887433 6788999999986
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.5e-07 Score=80.17 Aligned_cols=342 Identities=13% Similarity=0.051 Sum_probs=191.7
Q ss_pred CCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc----CCCCCC----CCCCcccHH-HHHHHHHh
Q 013839 34 KDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA----GSEFLE----SISASVSTK-MVEESVKL 104 (435)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----Y~~~~g~~~-lr~~ia~~ 104 (435)
.++++.+..++. ...++|-|.-+.. . ..|.....+...... ...+.+ -.+...+++ +-..++-.
T Consensus 16 ~dpl~~lr~~f~--lp~~viyLdgnSL---G--a~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApL 88 (407)
T COG3844 16 ADPLAKLRDRFA--LPGGVIYLDGNSL---G--ARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPL 88 (407)
T ss_pred cCchhhhHhhcc--CCCCeEEeecccc---c--cCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhh
Confidence 345666666663 4567888877663 1 122222222222221 111111 233444443 23333333
Q ss_pred HcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh--CCCCEEEEcCCCChhh-----HHHHhhCCCCeeeeeecCCCC
Q 013839 105 VYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF--HPESHIYFPDPTWSNH-----HNIWRDAQIPERTYHYYDPDS 177 (435)
Q Consensus 105 l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~--~~gd~Vlv~~p~y~~~-----~~~~~~~g~~~~~v~~~~~~~ 177 (435)
+ |.. +++++ ++.+.+--++.. +.+.+ .+|++|++++-.-.+. ...+...|.. +.+ .
T Consensus 89 i-GA~-----~~Evv--v~dtts~nl~k~--L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~----~ 151 (407)
T COG3844 89 I-GAR-----AGEVV--VTDTTSINLFKV--LAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL----E 151 (407)
T ss_pred h-cCC-----CCceE--EeCCcchHHHHH--HHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc----e
Confidence 3 332 56777 666666555555 44433 4689999988433222 1222333322 111 1
Q ss_pred CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 178 KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 178 ~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
..+++++++++++ +++.++++++.+.-||..+. +.+|..++++||++++.|-++..-... +. ..
T Consensus 152 ~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp--------~~--Lh 215 (407)
T COG3844 152 GVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVP--------VD--LH 215 (407)
T ss_pred eeeChHHHHHhhc---cceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcc--------ee--ec
Confidence 2457778999998 78999999999999999985 559999999999999999996543322 10 12
Q ss_pred cCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHH-------------------HHhhccccCCChhHHHH
Q 013839 258 DEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQ-------------------QIARAMYGSPPVHGILL 317 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~-------------------~~~~~~~~~~~~~~q~~ 317 (435)
..+-.+-+++.-|.+. -||- .+++.+ .+++.+.....+. -..+..-.+++.++..+
T Consensus 216 ~~gaDfaigcsyKYLNgGPGa-pa~l~v---~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aa 291 (407)
T COG3844 216 AAGADFAIGCSYKYLNGGPGA-PAGLFV---APRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAA 291 (407)
T ss_pred ccCCCeeeeeeceeccCCCCC-ceeEEe---ccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHH
Confidence 2345677888888873 2443 344432 3332222211110 01112223444555555
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC-----cceeEecCCCHHHHHHHhhhccEE
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ-----LGMFCFSGLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~ll~~~gI~ 392 (435)
+...|.- +.. -.+.+.|++-....+++.+.++......++...+|. |+=..+.--....+.+.|.++||.
T Consensus 292 l~~aLDi---fa~--~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi~rGVi 366 (407)
T COG3844 292 LEGALDI---FAD--VDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALIDRGVI 366 (407)
T ss_pred Hhhhhhh---hhh--cCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcHHHHHHHHHHcCcc
Confidence 5455532 222 236788888888889999888765432233333332 221222222456665556778987
Q ss_pred Ee---CCC-cEEecc--CCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MT---QDG-RISMAG--VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~---pgg-Ris~~~--~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.- |+- |+.|+. .+.+|+-.+++.|.+++++..
T Consensus 367 gD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 367 GDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ccccCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 62 332 998753 378999999999999997653
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=88.92 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=56.0
Q ss_pred CCCCCcccHHHHHHHHHhHcCCCC--ccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh
Q 013839 87 ESISASVSTKMVEESVKLVYGKDS--DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN 155 (435)
Q Consensus 87 ~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~ 155 (435)
.|.+..|.++||+++++++....+ ..+++++|+ +|.|+++++.++ +..+++|||.|++++|+|++
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Iv--vt~Ga~~al~~l--~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIV--LSAGATAANEII--MFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheE--EcCCHHHHHHHH--HHHHcCCCCEEEEeCCCCCC
Confidence 388999999999999999954433 345688999 999999999998 78889999999999999963
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-07 Score=88.80 Aligned_cols=269 Identities=15% Similarity=0.066 Sum_probs=152.0
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc---CCCCccccCCCeeeEecCCchhHHHHHHHHHH-Hh--
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY---GKDSDVVKEGRSAGVQALSGTGACRLFAEFQR-RF-- 140 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~---~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~-~~-- 140 (435)
+.+...+.+++....+.....|.......++-+.+.+++. +........+.-.+.+|.||++|+..+..... .+
T Consensus 50 ~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~ 129 (373)
T PF00282_consen 50 PSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALP 129 (373)
T ss_dssp -CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhh
Confidence 3344555555555554434555555556677777777762 33211000112446689999999877642111 11
Q ss_pred ---CCC-----C-EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCC
Q 013839 141 ---HPE-----S-HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPT 208 (435)
Q Consensus 141 ---~~g-----d-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPt 208 (435)
..| + .|++.+-++......+...|+.++.||+. + ++.+|+++|++++.+. +..+.+|+.+.....|
T Consensus 130 ~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~-~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~ 207 (373)
T PF00282_consen 130 RSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTD-E-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNT 207 (373)
T ss_dssp HHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BB-T-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTT
T ss_pred hhhhcccccccccccccccccccHHHHhcceeeeEEEEecCC-c-chhhhHHHhhhhhcccccccccceeeeccCCCccc
Confidence 112 2 45566657778888999999999999983 3 6789999999998653 1224456666677778
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+ +++++|.++|+++++|+-+|.+|.+..+-.. ..+.. .....-.=+.-+++|.++.| ..+|++. ..
T Consensus 208 Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~-----~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l--~r 276 (373)
T PF00282_consen 208 GAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSP-----EYRHLLFGIERADSITIDPHKWLGVP-YGCGVLL--VR 276 (373)
T ss_dssp SBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHC-----TTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEE--ES
T ss_pred ccc---cCHHHHhhhccccceeeeecccccccccccc-----cccccccccccccccccchhhhhcCC-ccceeEE--ee
Confidence 765 7788999999999999999999987332100 11111 11122234456889999854 6788885 44
Q ss_pred ChhHHHHHHHHHH----HHhh-------------ccccCCChhHHHHHHHHh--CChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 288 DSKQAAAIRSQIQ----QIAR-------------AMYGSPPVHGILLVATIL--SDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 288 ~~~~~~~~~~~l~----~~~~-------------~~~~~~~~~~q~~~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
++. ...... .+.. ..+...+. ...++..++ ..-+ .+..++..++..+..++
T Consensus 277 ~~~----~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G-----~~G~~~~i~~~~~~a~~ 346 (373)
T PF00282_consen 277 DKS----DLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLG-----REGYRERIRRCIELARY 346 (373)
T ss_dssp SGG----GHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred ccc----chHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHH
Confidence 655 222111 0000 01112233 223332222 1111 14566777777888889
Q ss_pred HHHHHHhhCC
Q 013839 349 LRQNLEKLGS 358 (435)
Q Consensus 349 l~~~l~~~~~ 358 (435)
+.+.+++.+.
T Consensus 347 l~~~l~~~~~ 356 (373)
T PF00282_consen 347 LADRLRKDPR 356 (373)
T ss_dssp HHHHHHTSTT
T ss_pred HHHHHHhCCC
Confidence 9999988763
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=77.65 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=186.2
Q ss_pred HhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHH-HHH--hCCCCEEEEcCCCChh
Q 013839 79 KIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF-QRR--FHPESHIYFPDPTWSN 155 (435)
Q Consensus 79 ~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~-~~~--~~~gd~Vlv~~p~y~~ 155 (435)
++..+ ...|..+.+...|.+++.+.+ |.. .+. .|.-|-+|-.++..+ +.. ..||.+..+++..|.-
T Consensus 67 amm~G-DEAYagsrs~~~L~~avkdif-Gfq-------~~i--PthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~Fd 135 (471)
T COG3033 67 AMMRG-DEAYAGSRSYYALADAVKDIF-GFQ-------YTI--PTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFD 135 (471)
T ss_pred HHhcc-chhhcccccHHHHHHHHHHhc-Cce-------eee--eccCCccHHHHHHHHHhhhccccCCccccccccceec
Confidence 34445 445988999999999888876 432 334 578888777666322 211 1255566677766643
Q ss_pred h-HHHHhhCCCCeeeeeecCCC--------CCCcChHhHHHHhhcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 013839 156 H-HNIWRDAQIPERTYHYYDPD--------SKSLDFAALMDDIKNAPD--SSFFLLHPSAHNPTGVDPTEEQWREISYQF 224 (435)
Q Consensus 156 ~-~~~~~~~g~~~~~v~~~~~~--------~~~~d~e~l~~~i~~~~~--~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~ 224 (435)
. ....+..|+.++.++..... -+.+|++.|++.+++.+. -+-+++....|.-.|.-.|.+.++++.++|
T Consensus 136 TTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia 215 (471)
T COG3033 136 TTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIA 215 (471)
T ss_pred chhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHH
Confidence 3 44566788888777653111 156899999999987532 234444455566779999999999999999
Q ss_pred HhcCceeeeecc-CCCccC----CCCcccHHHHHHhhhc--CCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH
Q 013839 225 KVKGHFPFFDMA-YQGFAS----GDLDKDAQAIRIFLED--EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS 297 (435)
Q Consensus 225 ~~~~~~vi~Dea-y~~~~~----~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~ 297 (435)
++|++.++.|.+ |.+..+ .+.....+++...... .-.+-+..|..|-. +.-+ .|++.. ..+...++..
T Consensus 216 ~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~-lvnm-GGfl~~---~D~~~fDvy~ 290 (471)
T COG3033 216 KKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDG-LVNM-GGFLCF---KDDSFFDVYE 290 (471)
T ss_pred HHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccc-eecc-ccEEEe---cCccHHHHHH
Confidence 999999999988 332222 0111123444433211 01123445666652 2222 156643 4443333555
Q ss_pred HHHHHhh-----ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCccee
Q 013839 298 QIQQIAR-----AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMF 372 (435)
Q Consensus 298 ~l~~~~~-----~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 372 (435)
.++...- ..+.+...-...+++.-|.+.- -.+++.. |.. ..++|.+.|.+.|. .+..|.||=-
T Consensus 291 ~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~----~~~yl~~---Rv~-Qv~YL~~~l~~~GV----pi~~paGGHa 358 (471)
T COG3033 291 ECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGV----NFDYLAH---RVA-QVQYLADGLEEAGV----PIVQPAGGHA 358 (471)
T ss_pred HHHhheEeeccccccCcccchhHHHHHHHHHHhc----CcHHHHH---HHH-HHHHHHHHHHhcCC----eeEecCCCce
Confidence 4544321 2344455444455544444321 0122322 232 23678889999884 4666667655
Q ss_pred EecCC------------CH-HHHHHHhhhccEEEeCCC---------------------cEEecc--CCCCcHHHHHHHH
Q 013839 373 CFSGL------------TP-YQVDRLAKEFHIYMTQDG---------------------RISMAG--VTTGNVNYLANAI 416 (435)
Q Consensus 373 ~~~~~------------~~-~~~~~ll~~~gI~i~pgg---------------------Ris~~~--~~~e~i~~~~~~l 416 (435)
+|++. .. .+...+.++.||-...-| |+.+.. .+.+-++..++++
T Consensus 359 vfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~ 438 (471)
T COG3033 359 VFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAF 438 (471)
T ss_pred EEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHH
Confidence 55532 22 245667788999887532 776532 2567789999999
Q ss_pred HHHHHh
Q 013839 417 HEVTRS 422 (435)
Q Consensus 417 ~~~l~~ 422 (435)
+++.+.
T Consensus 439 ~~l~e~ 444 (471)
T COG3033 439 KALKEN 444 (471)
T ss_pred HHHHhc
Confidence 888764
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-07 Score=82.21 Aligned_cols=285 Identities=14% Similarity=0.123 Sum_probs=162.0
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-Hh------hCCC-----Ceeee-eecCC----------C--
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WR------DAQI-----PERTY-HYYDP----------D-- 176 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~------~~g~-----~~~~v-~~~~~----------~-- 176 (435)
++++|++|..+++.+..-+.....|++.+-.|.++... ++ ..|. +.+.| |+.|. +
T Consensus 107 F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a 186 (452)
T KOG1403|consen 107 FVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDA 186 (452)
T ss_pred EecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcc
Confidence 89999999999976666565555566667777666432 11 1111 12222 22110 0
Q ss_pred C-CCcChHhHHHHhhc---CCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 177 S-KSLDFAALMDDIKN---APDSSFFLLHPSAHNPTGVDPTEE-QWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 177 ~-~~~d~e~l~~~i~~---~~~~~~~v~~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
+ ...-.+++++.+.. ......+++-.+-+.=.|.++++. ..+++++..+.+|-+.|.||+.-+|+.-+ ...|+
T Consensus 187 ~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG--~hyWa 264 (452)
T KOG1403|consen 187 DMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVG--SHYWA 264 (452)
T ss_pred cchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccc--hhhhh
Confidence 0 00112334443332 123445555555556667777555 57899999999999999999987777644 45666
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh--ccccCCChhHHHHHHHHhCChhhHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR--AMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
...+.= -.. +-++.|.+| .|..++.++ + .++ +.+++..... ..+.+-++.+..+..+.+..-+
T Consensus 265 fq~y~f--iPD--IVtmgKpmG-NGhPVa~Va--t-tke----IA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e--- 329 (452)
T KOG1403|consen 265 FQTYNF--IPD--IVTMGKPMG-NGHPVAAVA--T-TKE----IAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCE--- 329 (452)
T ss_pred hhhhcc--ccc--hheecccCC-CCCeeeEEe--c-cHH----HHHHhccccceehhccCCCchhHHHHHHHHHHHh---
Confidence 654421 112 335789999 999999885 3 777 8887765221 3455666666666555554221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc--ceeEecCC---------CH---H-HHHHHhhhccEEEe
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL--GMFCFSGL---------TP---Y-QVDRLAKEFHIYMT 394 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--g~~~~~~~---------~~---~-~~~~ll~~~gI~i~ 394 (435)
-+...+..++.-++|...|+++.. ...++..-. |.|+-+++ +. . .+.+|.+.++|.+.
T Consensus 330 -----~E~Lq~ha~~vG~~L~~lL~~~k~--kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLls 402 (452)
T KOG1403|consen 330 -----DENLQEHAQQVGEKLEVLLRRLKQ--KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLS 402 (452)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHhh--hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEe
Confidence 112222233333344444443321 123444333 44444433 11 1 23566566789998
Q ss_pred CCC----------cEEeccCCCCcHHHHHHHHHHHHHhhhhhhccccccC
Q 013839 395 QDG----------RISMAGVTTGNVNYLANAIHEVTRSEQETAKILCSIS 434 (435)
Q Consensus 395 pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~~~~~~~~~~~ 434 (435)
..| -++| ++++.++.+..|.+++.-+. +...+|.++
T Consensus 403 aDGPh~NilKiKPPmCF---neena~e~v~~ld~iLT~me-e~~~s~t~~ 448 (452)
T KOG1403|consen 403 ADGPHRNILKIKPPMCF---NEENADEFVLGLDEILTVME-ERLASATSA 448 (452)
T ss_pred cCCCCCceeecCCCccc---ChhhHHHHHHHHHHHHHHHH-HHHhhhhhh
Confidence 776 2333 78999999999999887433 444555543
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-06 Score=79.98 Aligned_cols=358 Identities=14% Similarity=0.124 Sum_probs=195.3
Q ss_pred CCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCc
Q 013839 32 AAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSD 111 (435)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~ 111 (435)
.+.+.+.+++++....++....++..|.- ..+.+.....+.++...+..-....|+- ...+-.+..+.+.+.-..
T Consensus 61 l~~d~v~~~i~~~~~ld~~~~~~~vS~~v--~~~~~~~~~l~~~~~~k~N~l~~d~fp~---~~~~e~~~Vnm~~~L~~~ 135 (491)
T KOG1383|consen 61 LPKDAVLELINDELMLDGNPRLGLASGVV--YWGEPELDKLIMEAYNKFNPLHPDEFPV---VRKLEAECVNMIANLFNA 135 (491)
T ss_pred CCHHHHHHHHHHHhccCCCcccCeeeEEE--ecCCcchhhHHHHHHhhcCccCccccch---hHHHHHHHHHHHHHHhcC
Confidence 35566777777776544444455555542 1222334444444444432112222433 334444444443211111
Q ss_pred cccCCCeeeEecCCchhHHHHHHH-HHHH-hC-CC---CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhH
Q 013839 112 VVKEGRSAGVQALSGTGACRLFAE-FQRR-FH-PE---SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 112 ~~~~~~v~~~~t~gg~~a~~~~~~-~~~~-~~-~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 185 (435)
++..++..|.||+++..++-. -... .. .| ..++++.-....+....+..+.+...||+ ++.++.+|+...
T Consensus 136 ---~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~-~~~~~~~D~~k~ 211 (491)
T KOG1383|consen 136 ---PSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPL-DEGDYRVDPGKV 211 (491)
T ss_pred ---CccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeec-cccceEecHHHH
Confidence 122456679999999433321 1111 11 23 34555555556666777788889999998 567899999999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCceeeeeccCCCccCC-CCcccHHHHHHhhhcCCeEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV-KGHFPFFDMAYQGFASG-DLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~i 263 (435)
.+.++ ..+..++..-|+.|+|.. ++.++|.++..+ +++++-+|.+-.+|.-. .. .....+ +.....+
T Consensus 212 ~~~i~---eNti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~----~~~~~f-dFr~p~V 280 (491)
T KOG1383|consen 212 VRMID---ENTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGY----LNEEEF-DFRVPGV 280 (491)
T ss_pred HHHhc---cceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccc----cCcccc-ccCCCCc
Confidence 99998 788999999999999965 778899999888 99999999997666642 00 000001 1111111
Q ss_pred -EE-eccccc-ccccCCcccEEEEEecChhHHHHHHH-HHH---H----HhhccccC-----CChhHHHHHHHHhCChhh
Q 013839 264 -CA-QSYAKS-MGLYGHRVGCLSILCVDSKQAAAIRS-QIQ---Q----IARAMYGS-----PPVHGILLVATILSDPNL 327 (435)
Q Consensus 264 -~~-~s~SK~-~g~~G~RvG~~~~~~~~~~~~~~~~~-~l~---~----~~~~~~~~-----~~~~~q~~~~~~l~~~~l 327 (435)
.+ .+-+|. +.++| .||++. ++++ +.. ++. + .....+.+ ....+|++....+..
T Consensus 281 ~Sisa~~HKYGl~~~G--~~~vl~--r~k~----~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~--- 349 (491)
T KOG1383|consen 281 TSISADGHKYGLAPAG--SSWVLY--RNKE----LLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGE--- 349 (491)
T ss_pred eeEeeccceeeeeecC--cEEEEE--cccc----cccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhH---
Confidence 11 122333 34445 688863 3555 211 110 0 00111112 223444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecC--CCHHHHHHHhhhccEEEeC----CC-cE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSG--LTPYQVDRLAKEFHIYMTQ----DG-RI 399 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~ll~~~gI~i~p----gg-Ri 399 (435)
+...+..++..+....|++.++..+. +.... |.-.+.+|-. ++.-.+..+|.+.|..+.. .+ -|
T Consensus 350 -----eGY~~~~~~ive~~~~l~egie~i~~---i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi 421 (491)
T KOG1383|consen 350 -----EGYRENTQNIVETARKLREGIENIKG---IKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHI 421 (491)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhhcccc---ceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEE
Confidence 33344445566677778888877642 33333 3333333332 2333456667788887753 23 33
Q ss_pred Eecc--CCCCcHHHHHHHHHHHHHhhhhhhc
Q 013839 400 SMAG--VTTGNVNYLANAIHEVTRSEQETAK 428 (435)
Q Consensus 400 s~~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 428 (435)
++.. ..++-.++++.-|+++++++....+
T Consensus 422 ~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~ 452 (491)
T KOG1383|consen 422 CVTRVHAREDVADRFVADIRKVVEELKSLPE 452 (491)
T ss_pred EEEeeeccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3321 1344468888999999988775443
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=84.70 Aligned_cols=270 Identities=17% Similarity=0.201 Sum_probs=162.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcC---CCChhhHHHH--hhCC-----CCeeeeeecCCCCCCcChHhHHHHhhc
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPD---PTWSNHHNIW--RDAQ-----IPERTYHYYDPDSKSLDFAALMDDIKN 191 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~---p~y~~~~~~~--~~~g-----~~~~~v~~~~~~~~~~d~e~l~~~i~~ 191 (435)
...+|+-|++.+ ..+++.|+|+++-.+ .++-.+.-.. +..- ++-.+|.+ ++.++-+|.|.|++....
T Consensus 111 Qp~SGSPANfav--Ytall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv-~~~TG~IDYD~Le~~A~~ 187 (477)
T KOG2467|consen 111 QPYSGSPANFAV--YTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKV-DPSTGYIDYDKLEKTATL 187 (477)
T ss_pred ccCCCCchhhHH--HhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceee-CCCCCceehHHHHHHHHh
Confidence 577888898888 788899999998555 3332221111 1111 12233444 466788999999987653
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
-++++++-.....|- .-|-.++.++|.+.|++++.|.++ +++.-.+. -+.++ .-.+|+..+..|
T Consensus 188 --frPk~iiaG~SaY~R-----~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v--ipsPF------ey~DiVTTTTHK 252 (477)
T KOG2467|consen 188 --FRPKLIIAGTSAYSR-----LIDYARFRKIADKVGAYLMADMAHISGLVAAGV--IPSPF------EYCDIVTTTTHK 252 (477)
T ss_pred --cCCcEEEeccccchh-----hccHHHHHHHHHhcCceeehhhhhHHHHHhccc--CCCcc------cccceeeccccc
Confidence 466788743322222 224567888888999999999996 22332211 00111 235788899999
Q ss_pred cccccCCcccEEEEEec-----C-h---hHHHHHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCV-----D-S---KQAAAIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~-----~-~---~~~~~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
.+ .|-|.|.+.. -. + + +..-++-+++.....+ .-.+|......+++.+|+... .-..+++.+
T Consensus 253 sL--RGPRg~mIFy-RkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~-----tpefk~Yq~ 324 (477)
T KOG2467|consen 253 SL--RGPRGAMIFY-RKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM-----TPEFKEYQK 324 (477)
T ss_pred cc--cCCcceeEEE-eccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC-----CHHHHHHHH
Confidence 96 6888777653 11 0 0 1112234444443332 234555555566666776432 134567777
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeE--ec----CCCHHHHHHHhhhccEEEe------------CCC-cEEe
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC--FS----GLTPYQVDRLAKEFHIYMT------------QDG-RISM 401 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~--~~----~~~~~~~~~ll~~~gI~i~------------pgg-Ris~ 401 (435)
+..++...|.+.|.+.|. +......-.++ |- |++...+++.++.-+|.+- ||| ||..
T Consensus 325 qV~~Nakala~~l~~~Gy----~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGt 400 (477)
T KOG2467|consen 325 QVLKNAKALASALISRGY----KLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGT 400 (477)
T ss_pred HHHHHHHHHHHHHHHcCc----eEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccc
Confidence 888888899999998885 33333222233 32 6688888888887888763 445 8863
Q ss_pred c-----cCCCCcHHHHHHHHHHHHH
Q 013839 402 A-----GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 402 ~-----~~~~e~i~~~~~~l~~~l~ 421 (435)
. +..++|+++..+-|.+.++
T Consensus 401 PAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 401 PAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred hhhcccCccHHHHHHHHHHHHHHHH
Confidence 2 2346778777777766654
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-06 Score=78.51 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=143.3
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
|.+.|+.+++. +..+++++..-+-..|++.+ +..+++..++|++|+.++|.||+..++...+. .+... +....
T Consensus 195 d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk---~la~d-~env~ 268 (427)
T KOG1402|consen 195 DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK---LLACD-YENVR 268 (427)
T ss_pred CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc---EEEee-hhhcC
Confidence 78999999984 67788888888999999875 45699999999999999999999888776541 11110 11111
Q ss_pred CeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIM 338 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~ 338 (435)
. ++++ +.|.++ .| +.++.+. | +++ ++..++......+.+-++++.+++.++|+-- .-+..
T Consensus 269 P-Divi--lgKalS-GG~~Pvsavl--~-~~~----im~~~~pgeHgsTyggNpLg~~vaiAalevi--------~eekL 329 (427)
T KOG1402|consen 269 P-DIVI--LGKALS-GGVYPVSAVL--A-DDD----IMLNIKPGEHGSTYGGNPLGCAVAIAALEVI--------VEEKL 329 (427)
T ss_pred C-CeEE--Eecccc-CCeeeeEEEE--e-cHH----HHhccCCCccccccCCChHHHHHHHHHHHHH--------HHHHH
Confidence 1 2222 567776 33 3355443 4 777 8777776666677888888888888887532 12456
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC--CccccccCcceeEecCC--------C-HHHHHHHhhhccEEEeCCC----cEEec-
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSL--NWEHITNQLGMFCFSGL--------T-PYQVDRLAKEFHIYMTQDG----RISMA- 402 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~g~~~~~~~--------~-~~~~~~ll~~~gI~i~pgg----Ris~~- 402 (435)
.++....-+.++..|..+..+. -++.... -|++.-+-+ + .+.+. .+++.|+..-|-. ||...
T Consensus 330 ~era~~lG~~l~~~L~~l~~~~p~~v~~VRG-rGl~~ai~i~~~~~~~~~aw~~cl-~lk~~g~LAkptH~~IiRfaPPL 407 (427)
T KOG1402|consen 330 VERAAKLGEILRDQLNKLQKKFPHVVKEVRG-RGLLNAIVINPSKTSGQDAWDVCL-ALKENGLLAKPTHGNIIRFAPPL 407 (427)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhheeec-cceEEEEEeccccccchhHHHHHH-cccccccccCCCCCCeEEecCCc
Confidence 6777778888899998876421 1122222 344443321 1 22333 4578899998874 88742
Q ss_pred cCCCCcHHHHHHHHHHHHH
Q 013839 403 GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 403 ~~~~e~i~~~~~~l~~~l~ 421 (435)
..+++|+++.++.|.+.+.
T Consensus 408 ~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 408 VISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccCHHHHHHHHHHHHHHhc
Confidence 3489999999999988763
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.9e-06 Score=77.70 Aligned_cols=302 Identities=12% Similarity=0.051 Sum_probs=173.8
Q ss_pred CCCCCC---CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHH-HHHHH-hCCC----CEEEEcCCCChh
Q 013839 85 FLESIS---ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFA-EFQRR-FHPE----SHIYFPDPTWSN 155 (435)
Q Consensus 85 ~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~-~~~~~-~~~g----d~Vlv~~p~y~~ 155 (435)
++-|.| .+|+.++...+.+||....+. +.|. +.-+.|.++-..-+ .+.+- -..| +.++||+..++.
T Consensus 95 iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----Davs-LQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGT 169 (496)
T COG1003 95 IHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVS-LQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGT 169 (496)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceee-ccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCC
Confidence 455666 578889999999998433322 1332 23444544433331 12221 2234 689999998887
Q ss_pred hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeec
Q 013839 156 HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDM 235 (435)
Q Consensus 156 ~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~De 235 (435)
....+.+.|++++.|++ .+++.+|+++|++++. +++.++.+.+||. .| +=.+++.+|+++.+++|..+..|.
T Consensus 170 NPASAam~G~~VV~V~~--~~~G~VDlddLk~k~~---~~~AalMiTnPsT-~G--vFE~~I~ei~~ivH~~Gg~vY~DG 241 (496)
T COG1003 170 NPASAAMAGFKVVVVKC--DENGNVDLDDLRAKAE---DNLAALMITNPST-LG--VFEEDIREICEIVHEAGGQVYYDG 241 (496)
T ss_pred ChhhHhhcCceEEEEec--CCCCCccHHHHHHHhc---cceeEEEeccCcc-cc--cchhhHHHHHHHHHHcCCEEEecC
Confidence 77788899999999998 4567899999999998 7788888866532 34 457889999999999999999999
Q ss_pred cCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc----CCcccEEEEEecChhHHHHHHHHHHH----Hh----
Q 013839 236 AYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY----GHRVGCLSILCVDSKQAAAIRSQIQQ----IA---- 303 (435)
Q Consensus 236 ay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~----G~RvG~~~~~~~~~~~~~~~~~~l~~----~~---- 303 (435)
+-.--..+ +..-.+.+- +++=.-+.|+|..| |-..|=+.+ ... ++..+-. ..
T Consensus 242 ANlNA~vG--------~~rPGd~G~-DV~HlNLHKTF~iPHGGGGPG~GPvgV---k~~----L~pfLP~p~~~~~~~~y 305 (496)
T COG1003 242 ANLNAIVG--------LARPGDMGF-DVVHLNLHKTFCIPHGGGGPGAGPVGV---KAH----LAPFLPGPVVYHDVGEY 305 (496)
T ss_pred cchhhhhc--------ccccccccc-ceEEeecccccccCCCCCCCCCCceeh---Hhh----ccccCCCCcccCCCccc
Confidence 83211111 101112222 33334578887333 444555532 222 2221111 00
Q ss_pred ------------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--Cc
Q 013839 304 ------------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QL 369 (435)
Q Consensus 304 ------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~ 369 (435)
...+.+...+...+-+.++.-+. +.+++.-+..--+.+++...|+.. ++ +.+.+. ..
T Consensus 306 ~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~------~GL~~ase~AvLNANYia~rL~~~-y~--~~y~~~~~~~ 376 (496)
T COG1003 306 RLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGA------DGLKQASEVAVLNANYIARRLKGY-YP--VPYTGENRVA 376 (496)
T ss_pred cccCCCCccceeeccccCcchHHHHHHHHHHHHhH------HHHHHHHHHHHHhHHHHHHHhhhc-Cc--cccCCCCcce
Confidence 01122222333333333333332 556777777777888999998863 11 111111 11
Q ss_pred ceeEec--------CCCHHHH-HHHhhhccEEEeCC-------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 370 GMFCFS--------GLTPYQV-DRLAKEFHIYMTQD-------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 370 g~~~~~--------~~~~~~~-~~ll~~~gI~i~pg-------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
-=|++- |++.+++ .+|+ .+|+-...- | -|=.+- .+.++++++++++.++.++..+
T Consensus 377 HE~ild~r~l~~~~Gv~~~DvAKrLl-D~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 377 HECILDARPLKKETGVRALDVAKRLL-DYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred eEEEeechHhHhhcCCcHHHHHHHHH-hcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 112211 4555555 5555 588866421 2 222211 2557799999998888776543
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.9e-06 Score=77.08 Aligned_cols=190 Identities=14% Similarity=0.021 Sum_probs=120.5
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEE-----EcCCCChhhHHHHhhCCCCeeeeeecC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIY-----FPDPTWSNHHNIWRDAQIPERTYHYYD 174 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vl-----v~~p~y~~~~~~~~~~g~~~~~v~~~~ 174 (435)
.+++.+.+.... +..+ +++..+.|+.++ +.++..++..|+ ++ ++.+...++++..|++++.+-..+
T Consensus 72 ~~~~~~~~~~~a----ea~~--ivnnn~aAVll~--~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn 142 (395)
T COG1921 72 ELAELLCGLTGA----EAAA--IVNNNAAAVLLT--LNALAEGKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTN 142 (395)
T ss_pred HHHHHHhcccch----hhee--eECCcHHHHHHH--HhhhccCCeEEEEcccccc-CCCCChhHHHHHcCCEEEEecccC
Confidence 555555444322 2333 788888888777 555544334443 33 566788899999999999986422
Q ss_pred CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 175 PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN-PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 175 ~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
.-...+++.++. .++++++-.+-+| +.--.++ .++++++|++|++++|+|.+-...... .+.++
T Consensus 143 ----~t~~~d~~~AIn---e~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~-----e~~l~ 207 (395)
T COG1921 143 ----RTHLKDYELAIN---ENTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDK-----EPDLR 207 (395)
T ss_pred ----cCCHHHHHHHhc---cCCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCcccccc-----ccchh
Confidence 357788999998 5666555444333 2222334 447899999999999999994333221 12333
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
.+... .-.+++.|--|.+| |.+-|.+++ .++ ++.++++..-....-.......++.++|+
T Consensus 208 ~~la~-GaDLV~~SgdKllg--GPqaGii~G---kKe----lI~~lq~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 208 EALAL-GADLVSFSGDKLLG--GPQAGIIVG---KKE----LIEKLQSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred HHHhc-CCCEEEEecchhcC--CCccceEec---hHH----HHHHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence 33332 35788899999986 777888865 888 77777765433334444455555555554
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-06 Score=75.31 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=115.3
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH----------H
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI----------W 160 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~----------~ 160 (435)
-|...|-...|+-+ +.. ..++-....+||.|+..+ +..+++|||+.+... --|....++ +
T Consensus 65 ~GRdtLe~vyA~vf-~aE------~a~VRpq~isGTHAI~~a--Lfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL 135 (416)
T COG4100 65 LGRDTLERVYAQVF-GAE------AALVRPQIISGTHAIACA--LFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSL 135 (416)
T ss_pred cchhHHHHHHHHHh-ccc------cceeeeeeecchhHHHHH--HHhccCCCCeEEEecCCcchhHHHHhccCCCCcccH
Confidence 45556655555554 442 234444677999999888 899999999987544 234444433 3
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHh--cCceeeee
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGV----DPTEEQWREISYQFKV--KGHFPFFD 234 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~----~~~~~~l~~i~~~~~~--~~~~vi~D 234 (435)
...|+....+|+ ..++.+|++.+++.+. ++++++.+- -.+|. .++.+++++++++.|+ -++++++|
T Consensus 136 ~dfgi~Y~~v~L--t~~gkiD~~~v~~~i~---~~tkli~IQ---RS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVD 207 (416)
T COG4100 136 KDFGIKYKAVPL--TADGKIDIQAVKTAIS---DRTKLIGIQ---RSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVD 207 (416)
T ss_pred HHhCcceeeccc--ccCCcccHHHHHHhcC---ccceEEEEE---eccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEe
Confidence 456777777887 4457899999999998 788988873 33443 3678899999999997 37999999
Q ss_pred ccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc--ccEEEEEecChh
Q 013839 235 MAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR--VGCLSILCVDSK 290 (435)
Q Consensus 235 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R--vG~~~~~~~~~~ 290 (435)
.+|.+|.... + +..+ .-++..+|+-|.-| .|+- -||+.+ ..+
T Consensus 208 NCYGEFvE~~-E--Pt~v-------GaDliAGSLIKNpG-GgiaktGGYiaG---k~~ 251 (416)
T COG4100 208 NCYGEFVEEK-E--PTHV-------GADLIAGSLIKNPG-GGIAKTGGYIAG---KAE 251 (416)
T ss_pred ccchhhhhcc-C--cccc-------chhhhccceeeCCC-Cceeeccceeec---hHH
Confidence 9999998652 1 1111 23567889999865 3332 267743 666
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-05 Score=76.69 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=108.9
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC-----
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH----- 141 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~----- 141 (435)
+.++..+......+.+.....|..+.+...+-+.+.+++...-+.+ +. .+++|+|||.|+..++...+-..
T Consensus 94 ~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~--~G~~TsGGT~ANl~aL~~AR~~k~~p~a 169 (608)
T TIGR03811 94 TLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYK--NG--WGHIVADGSLANLEGLWYARNIKSLPFA 169 (608)
T ss_pred CCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCC--CC--CeEEeCChHHHHHHHHHHHHHhhhccch
Confidence 4455555555555555445555555566677777777763221111 11 25679999999877643222110
Q ss_pred ---------------------------------------------CCC------EEEEcCCCChhhHHHHhhCCC---Ce
Q 013839 142 ---------------------------------------------PES------HIYFPDPTWSNHHNIWRDAQI---PE 167 (435)
Q Consensus 142 ---------------------------------------------~gd------~Vlv~~p~y~~~~~~~~~~g~---~~ 167 (435)
+|. +++++.-.+..+...+...|+ .+
T Consensus 170 ~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~v 249 (608)
T TIGR03811 170 MKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQV 249 (608)
T ss_pred hhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccE
Confidence 000 577777778788888888888 58
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCc--eeeeeccCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGH--FPFFDMAYQGFA 241 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~--~vi~Deay~~~~ 241 (435)
+.||+ ++++.+|++.|++.+.+. ...+.+||-+.....+|.+=+.+++.+|++.++++|+ |+.+|.||.++.
T Consensus 250 v~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 250 IPVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326 (608)
T ss_pred EEeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence 88888 346799999999998642 2234566667788888887555544444444477887 699999998853
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.7e-06 Score=76.43 Aligned_cols=280 Identities=15% Similarity=0.091 Sum_probs=145.1
Q ss_pred ecCCchhHHHHHHHHHHHh--CCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHhHHHHhhcCCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRF--HPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAALMDDIKNAPDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~ 198 (435)
+++.+|+ +.+++.++++- ..++.|+.+.-....-...+..+|.+++.||...+ +....|.+.+++.+++..+...+
T Consensus 79 ~vP~atg-m~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iL 157 (389)
T PF05889_consen 79 VVPMATG-MSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGADNIL 157 (389)
T ss_dssp EESS-HH-HHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEE
T ss_pred EEecccc-cHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeE
Confidence 4555554 33333344442 35688888876544444566788999999875423 33455778888888764445555
Q ss_pred EEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC
Q 013839 199 LLHPSAHNPTGVDPTEE-QWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~ 277 (435)
.+++ .+++...... ++++|.++|++||++.|+..||.-=.. .--..+......+.-..++.|.-|.|-.| .
T Consensus 158 cvlt---ttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~----~~~~~i~~a~~~GRvda~vqS~dkNF~VP-v 229 (389)
T PF05889_consen 158 CVLT---TTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSS----KCMHLIQQAWRVGRVDAFVQSTDKNFMVP-V 229 (389)
T ss_dssp EEEE---ESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-H----HHHHHHHHHHHHSTCSEEEEEHHHHHCEE-S
T ss_pred EEEE---ecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHH----HHHHHHHHHHhcCCcceeeeecCCCEEec-C
Confidence 5553 3344444333 499999999999999999999842110 01112222333456678899999998533 2
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
. |-++ .+.++. .+..+.+..-.-.+..|. ......+|.-+. ..|..-+.+..+.+....+.+.+.-++.+
T Consensus 230 G-gai~-As~~~~----~i~~vs~~YpGRas~sp~--ld~~itLl~LG~--~g~~~ll~~r~~~f~~l~erl~~~aee~~ 299 (389)
T PF05889_consen 230 G-GAIM-ASFDPS----GILAVSKEYPGRASASPS--LDLFITLLSLGC--TGYGALLKERKASFPYLKERLKKWAEEVG 299 (389)
T ss_dssp S-HEEE-EESSHH----HHHHHHHTSHSHBTSHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C-CcEE-EecCHH----HHHHHHHHhhhhhhcccc--hHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 3333 365777 666666543222222222 223333333221 11334445555555555555554444444
Q ss_pred CCCCccccccCcceeEec-CC---C---HHHHHHHhhhccEEE----eCCC-------------cE---EeccCCCCcHH
Q 013839 358 SSLNWEHITNQLGMFCFS-GL---T---PYQVDRLAKEFHIYM----TQDG-------------RI---SMAGVTTGNVN 410 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~~-~~---~---~~~~~~ll~~~gI~i----~pgg-------------Ri---s~~~~~~e~i~ 410 (435)
-. -.+.......+.+-+ .+ . ..++-.+|...||.= .|++ -| |..+++.||++
T Consensus 300 e~-ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd 378 (389)
T PF05889_consen 300 ER-LLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVD 378 (389)
T ss_dssp EE-BSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHH
T ss_pred hh-hcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHH
Confidence 10 011222333333333 22 1 246655666676643 3332 22 22356899999
Q ss_pred HHHHHHHHHHH
Q 013839 411 YLANAIHEVTR 421 (435)
Q Consensus 411 ~~~~~l~~~l~ 421 (435)
.++++|+++++
T Consensus 379 ~~v~rL~k~i~ 389 (389)
T PF05889_consen 379 YFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.5e-07 Score=83.17 Aligned_cols=213 Identities=11% Similarity=0.064 Sum_probs=52.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC------hhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTW------SNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y------~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
++++...|+.++ +.+ +.+|.+|++..-.- +...++++..|++++.|-..+ .-.+++.++++. ++
T Consensus 67 VvNnnaAAv~L~--l~~-la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~---e~ 136 (367)
T PF03841_consen 67 VVNNNAAAVLLA--LNT-LAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAIT---EN 136 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc--ccc-ccccccccccccccccccccccccccccccccccccccccc----cccccccccccc---cc
Confidence 577777777666 333 34677777655221 224567788999999886532 346788999998 78
Q ss_pred cEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeeccCC---CccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 196 SFFLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMAYQ---GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 196 ~~~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Deay~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
|.+++-.+++|-. |..-.+ .++++++++++|++++|+|-.-. ++...++ ++.+.+..+.. ..-+++++|-.|
T Consensus 137 Ta~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl-~~Ep~v~~~~~-~GaDlV~fSGdK 213 (367)
T PF03841_consen 137 TAALLKVHTSNFRIQGFTGEV-SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGL-PDEPTVQEYLA-AGADLVTFSGDK 213 (367)
T ss_dssp -------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCC-CT-SEEEEETTS
T ss_pred ccccccccccccccccccccc-cHHHHHHHHhhcCCcEEEECCCCCCcCcccccC-ccccHHHHHhh-cCCCEEEEECCC
Confidence 8888888877764 333222 57899999999999999998731 1111111 11234444433 245788899999
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh----hHHH--HHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN----LKSL--WIDEVKIMADRIQR 344 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~----l~~~--~~~~~~~~~~~~~~ 344 (435)
.+| |...|.+++ .++ +++++++..-.-..-.......++.+.|.... ..++ ....+....+.+++
T Consensus 214 lLG--GPQaGiI~G---kk~----lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~ 284 (367)
T PF03841_consen 214 LLG--GPQAGIIVG---KKE----LIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRA 284 (367)
T ss_dssp SSS--S-S-EEEEE---EHH----HHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------
T ss_pred cCC--CCCeEEEEe---CHH----HHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 997 455788865 888 88888876544455566666656555553211 0000 01223344455555
Q ss_pred HHHHHHHHHHhh
Q 013839 345 KRTTLRQNLEKL 356 (435)
Q Consensus 345 ~~~~l~~~l~~~ 356 (435)
+.+.+.+.|+..
T Consensus 285 rA~~l~~~l~~~ 296 (367)
T PF03841_consen 285 RAERLAAQLKAA 296 (367)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 566666555443
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00022 Score=66.22 Aligned_cols=262 Identities=14% Similarity=0.133 Sum_probs=135.4
Q ss_pred CCeeeEecCCc-hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-HHhhCCC--CeeeeeecCCCC--CCcChHhHHHHh
Q 013839 116 GRSAGVQALSG-TGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-IWRDAQI--PERTYHYYDPDS--KSLDFAALMDDI 189 (435)
Q Consensus 116 ~~v~~~~t~gg-~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~g~--~~~~v~~~~~~~--~~~d~e~l~~~i 189 (435)
++.-..+..|| ++.+..+ .+.++.+..+-.+....|..... -++.++- ++..... .+.+ .-++++... +
T Consensus 67 d~Y~VlflqGGat~qf~~~--p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~-~~~~~~~iP~~~~~~--~ 141 (365)
T COG1932 67 DDYKVLFLQGGATGQFAMA--PMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARI-EEAGYGSIPDLSKWD--F 141 (365)
T ss_pred CCceEEEEcCccHHHHHHH--HHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccce-eccCccCCCChhhcc--c
Confidence 33333366666 5555555 66666544331444555544422 2334442 2222222 1222 223333322 2
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA 269 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 269 (435)
. ++...+.++.-+.-+|+-++.. .. +.. +.++|.|..-.-+... . +-..-.++-.|.-
T Consensus 142 ~---~~~ayv~~~~NeTi~Gv~v~~~--p~---~~~--~~~~v~D~SS~ilsr~-i-----------Dvsk~dviyagaQ 199 (365)
T COG1932 142 S---DNDAYVHFCWNETISGVEVPEL--PD---IGS--DGLLVADASSAILSRP-I-----------DVSKYDVIYAGAQ 199 (365)
T ss_pred C---CCccEEEEecCCcccceEccCC--CC---CCC--CceEEEecccHHhcCC-C-----------ChhHcceEEEehh
Confidence 2 2233344443333446655421 11 111 2778888873323211 1 2223456678899
Q ss_pred ccccccCCcccEEEEEecChhHHHHHHHHHHHH-------------hhccccCCChhHHHHHHHHhCChhhHHHHH---H
Q 013839 270 KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-------------ARAMYGSPPVHGILLVATILSDPNLKSLWI---D 333 (435)
Q Consensus 270 K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~---~ 333 (435)
|.+|..| ++.+++ .++ ++.+.... ...++.+||.++.+.....++ |. -
T Consensus 200 KnlGpaG--ltvvIv---r~~----~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~-------Wlk~~G 263 (365)
T COG1932 200 KNLGPAG--LTVVIV---RPD----LLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFK-------WLKSQG 263 (365)
T ss_pred hccCccc--eEEEEE---cHH----HHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHH-------HHHHcC
Confidence 9999888 555654 777 44444332 124456677766665544432 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-----CCHHHHHHHhhhccEEEeCC-----C-cEEec
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG-----LTPYQVDRLAKEFHIYMTQD-----G-RISMA 402 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~pg-----g-Ris~~ 402 (435)
.++.+.++.+++.+.|++.+...+............-+.+.+. ++..++..+ +++|+..-.| | |+|+.
T Consensus 264 Gl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~ld~~fv~ea-e~~gl~~lkGhr~vgGmRasiy 342 (365)
T COG1932 264 GLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAELDKGFVAEA-EAAGLIYLKGHRSVGGLRASIY 342 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHHHHHHHHHHH-HHcCCceeccccCCCceeeeee
Confidence 3678888999999999999987754211111112222333332 345566655 4567776544 4 99986
Q ss_pred c-CCCCcHHHHHHHHHHHHH
Q 013839 403 G-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 403 ~-~~~e~i~~~~~~l~~~l~ 421 (435)
+ ++.|+++.+++-++.+.+
T Consensus 343 nA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 343 NAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 5 367788777777766654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00054 Score=72.65 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=134.3
Q ss_pred ecCCchhHHHHHHHHHHH-hC--CCCEEEEcCCCChhhHHHHh----hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 122 QALSGTGACRLFAEFQRR-FH--PESHIYFPDPTWSNHHNIWR----DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~-~~--~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
+..+++.+-+++ +++. .. ++++|++++-.++.+..+++ ..|.+++.++ +++|++.+
T Consensus 131 l~d~atA~aEa~--~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~----- 193 (939)
T TIGR00461 131 LLDEGTAAAEAM--ALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV----- 193 (939)
T ss_pred ccchhhHHHHHH--HHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC-----
Confidence 567777777766 3332 22 34899999988888776555 6677776653 34454443
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~ 274 (435)
++.++++.+|+ -+|.+ +++++|.+.++++|.+++++.--..+.. + .. +....-+|++++ +|.||.
T Consensus 194 ~~~~v~~q~Pn-~~G~i---ed~~~i~~~~h~~gal~~~~ad~~al~l--l-~~-------Pge~GaDi~vg~-~q~fg~ 258 (939)
T TIGR00461 194 DVFGCLLQYPA-TDGSI---LDYKQLIDALHSHKSLVSVAADLMALTL--L-TP-------PGHYGADIVLGS-SQRFGV 258 (939)
T ss_pred CEEEEEEECCC-CCeEE---ecHHHHHHHHHHcCCEEEEEechHHhCC--c-CC-------HHHcCCcEEeeC-CCccCC
Confidence 35677776664 46765 4788999999999999998543221211 1 11 111233444443 333332
Q ss_pred ----cCCcccEEEEEecChhHHHHHHHHHH------------------------HHhh--ccccCCCh--hHHH-HHHHH
Q 013839 275 ----YGHRVGCLSILCVDSKQAAAIRSQIQ------------------------QIAR--AMYGSPPV--HGIL-LVATI 321 (435)
Q Consensus 275 ----~G~RvG~~~~~~~~~~~~~~~~~~l~------------------------~~~~--~~~~~~~~--~~q~-~~~~~ 321 (435)
.|.-.|++.+ .++ +...+- ++.+ ..+++..+ .... ++...
T Consensus 259 p~g~GGP~aG~~a~---~~~----l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y 331 (939)
T TIGR00461 259 PMGYGGPHAAFFAV---KDE----YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSY 331 (939)
T ss_pred CCCCCCCceeeeee---cHh----hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHH
Confidence 3444666642 444 222110 0011 11111111 1111 11111
Q ss_pred hC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec--C---CCHHHHHHHhhhccEEEeC
Q 013839 322 LS-DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--G---LTPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 322 l~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~---~~~~~~~~ll~~~gI~i~p 395 (435)
+. .+ .+.++++.++...+..++.+.|++.|. +...+ .+|--+ . .+.+.+.+.+.++||.+..
T Consensus 332 ~~~~G------~~GL~~iA~~~~~~a~~l~~~L~~~G~----~~~~~--~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~ 399 (939)
T TIGR00461 332 CVYHG------PKGLKNIARRIHSLTSILANGLENDPH----ELINK--TWFDTLTVKVGNGISSELLKAAEEFNINLRA 399 (939)
T ss_pred HHHHC------HHHHHHHHHHHHHHHHHHHHHHHhCCC----cccCC--CccceEEEEeCCCCHHHHHHHHHHCCCeeee
Confidence 11 11 156788888888899999999998874 33322 233211 2 2445554444668999875
Q ss_pred CC----cEEeccC-CCCcHHHHHHHHH
Q 013839 396 DG----RISMAGV-TTGNVNYLANAIH 417 (435)
Q Consensus 396 gg----Ris~~~~-~~e~i~~~~~~l~ 417 (435)
.. ++|+.-. +.++++.+++.+.
T Consensus 400 ~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 400 VDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 42 6666432 6788888888884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00057 Score=66.21 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=104.7
Q ss_pred ecCCchhHHHHHHHHHHHhC-CCCEEEEcCCCChhhHHHHh----hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFH-PESHIYFPDPTWSNHHNIWR----DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+-.+++.+-+.+....+.-. ..++|+++.-.++.+..+++ ..|++++.++.. + +...| . +++
T Consensus 132 lyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~-~-~~~~d--------~---~~~ 198 (429)
T PF02347_consen 132 LYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLD-E-DGTTD--------D---DDT 198 (429)
T ss_dssp BSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BB-T-TCSB---------S---TTE
T ss_pred CCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEeccc-c-cCCcc--------c---cCe
Confidence 45677766666632222322 23699999999988887554 578888888773 2 22333 2 678
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc-
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY- 275 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~- 275 (435)
.++++.+||+ .|.+ +++++|.++++++|.++++ .+ .......+. + +....-+|++++ +|.||.|
T Consensus 199 a~v~vq~Pn~-~G~~---ed~~~i~~~~h~~gal~~~-~a-d~~aL~~l~----~----Pge~GADI~vg~-~Q~fg~p~ 263 (429)
T PF02347_consen 199 AAVMVQNPNT-FGVF---EDIKEIADIAHAAGALVIV-GA-DPNALGGLK----S----PGEYGADIVVGE-HQTFGIPM 263 (429)
T ss_dssp EEEEEESS-T-TSB-----THHHHHHHHHHTT-EEEE-CG-GCCGCCTC----------GGGGT-SEEEEC-CTTTT---
T ss_pred EEEEeecCCC-CceE---eeHHHHHHHHHHcCCEEEE-ec-CHHHHhCcC----C----hhhcCccEEeeC-CCCCcccC
Confidence 9999977753 5654 4588999999999998887 44 333333211 1 122233555665 7776543
Q ss_pred ---CCcccEEEEEecChhHHHHHHHHH----------------------------HHHhhccccCCC-hhHHHHHHHHhC
Q 013839 276 ---GHRVGCLSILCVDSKQAAAIRSQI----------------------------QQIARAMYGSPP-VHGILLVATILS 323 (435)
Q Consensus 276 ---G~RvG~~~~~~~~~~~~~~~~~~l----------------------------~~~~~~~~~~~~-~~~q~~~~~~l~ 323 (435)
|-..|++.+ .++ +...+ ++-+-....+.+ .+...++...+.
T Consensus 264 ~~GGP~~G~~a~---~~~----l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~ 336 (429)
T PF02347_consen 264 GFGGPGAGFFAV---RED----LVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLA 336 (429)
T ss_dssp CCC-S--EEEEE----GG----GGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHH
T ss_pred CCCCCCeeeEEE---hhh----hhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 555677743 444 32222 111111222222 222222223332
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
.-+ .+.+++..++...+..++.+.|++.
T Consensus 337 ~~G-----~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 337 YLG-----PEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HhC-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 2778899999999999999999886
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.011 Score=56.19 Aligned_cols=260 Identities=16% Similarity=0.155 Sum_probs=138.7
Q ss_pred ecCCchhHHHHHHHHHHHhC-CCCEEEEcCCCChhhHHHHhh----CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFH-PESHIYFPDPTWSNHHNIWRD----AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
.--++|.+-+.+.....+-. +.++++|+.-.|+.+.++++. .|.+++.++. + |.+++++. .. ..+
T Consensus 142 m~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~---~----d~~~l~~~-~~--~~~ 211 (450)
T COG0403 142 MLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA---D----DLDDLESA-DD--GDV 211 (450)
T ss_pred hhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc---c----hhhhhhhc-cc--cCe
Confidence 45677777666632333322 248999999999999888773 4455555543 1 67777777 31 466
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc---cc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS---MG 273 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~---~g 273 (435)
..+++ ++|...-....++++|.+.+++++.++++=.= .+. ..+..-++...-+|++++.... +|
T Consensus 212 ~gv~v---QyP~~~G~~~~d~~~l~~~~h~~~al~~v~aD--pla--------L~LL~pPGe~GADIvvG~~QrfGvPmg 278 (450)
T COG0403 212 FGVLV---QYPNTFGIVEEDLRALIEAAHSAGALVIVAAD--PLA--------LGLLKPPGEFGADIVVGSAQRFGVPMG 278 (450)
T ss_pred EEEEE---ecCCCCCccchhHHHHHHHHhhcCCEEEEEec--hhH--------hhccCCccccCCceEEecCcccCCCcC
Confidence 77777 45554434567899999999999987765210 111 1111123334567777765543 56
Q ss_pred ccCCcccEEEEEecChhHHHHH-----------------------H-HHHHHHhhccccCCChhH-HHHHHH--HhCChh
Q 013839 274 LYGHRVGCLSILCVDSKQAAAI-----------------------R-SQIQQIARAMYGSPPVHG-ILLVAT--ILSDPN 326 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~-----------------------~-~~l~~~~~~~~~~~~~~~-q~~~~~--~l~~~~ 326 (435)
+.|-.+||..+ .++...++ . +.+++-+-.+..+.+... ..+++. .+..+
T Consensus 279 fGGPhag~fA~---~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp- 354 (450)
T COG0403 279 FGGPHAGYFAV---KDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGP- 354 (450)
T ss_pred CCCcceeeeeE---hHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhCh-
Confidence 66777888743 44421110 0 111111111112222111 111111 12222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec--CCCHHHHHHHh---hhccEEEeCC--CcE
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--GLTPYQVDRLA---KEFHIYMTQD--GRI 399 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~ll---~~~gI~i~pg--gRi 399 (435)
+.++++.++..+...++.+.|++.+. ++..... .||--+ .+..+....++ ...|+-++.- .++
T Consensus 355 ------~GLk~iA~r~~~~a~~la~~L~~~~~--g~~~~~~--~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~~~~ 424 (450)
T COG0403 355 ------QGLKEIAERIHRLAAYLAAGLKEIGA--GVELVFD--HFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDADTV 424 (450)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcCC--ceEeccc--cceeeEEEecchhHHHHHHHHHHhcCCceeeecCCce
Confidence 67888999999999999999996542 1233222 334322 33322222222 2356666543 255
Q ss_pred Eecc---CCCCcHHHHHHHHHH
Q 013839 400 SMAG---VTTGNVNYLANAIHE 418 (435)
Q Consensus 400 s~~~---~~~e~i~~~~~~l~~ 418 (435)
.++. .+.++++.+++.+..
T Consensus 425 ~ia~tEt~t~~~i~~l~~~~~~ 446 (450)
T COG0403 425 LIALTETTTKEDIDALVAAFGG 446 (450)
T ss_pred EEEeecccCHHHHHHHHHHHhh
Confidence 5543 134556555555543
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=62.30 Aligned_cols=151 Identities=15% Similarity=0.029 Sum_probs=88.2
Q ss_pred ecCCchhHHHHHHHHHHH-hCCC----------CEEEEcC-CCChhhHHHHhhCC---CCeeeeeecCCCCCCcChHhHH
Q 013839 122 QALSGTGACRLFAEFQRR-FHPE----------SHIYFPD-PTWSNHHNIWRDAQ---IPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~-~~~g----------d~Vlv~~-p~y~~~~~~~~~~g---~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
+.+||+-++..+..+..- .-|+ +-|+..+ -++......+..+| -..+.|++ .+.+.+++++|+
T Consensus 164 f~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t--~e~Gkm~~~dLe 241 (510)
T KOG0629|consen 164 FAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKT--DERGKMIPDDLE 241 (510)
T ss_pred ecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecc--cccCccchHHHH
Confidence 488887665544311111 1133 3344433 45555666777777 35677776 445789999999
Q ss_pred HHhhcCCCC---cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 187 DDIKNAPDS---SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 187 ~~i~~~~~~---~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+.|.+...+ +.++-.+.. |-+..--+++..|+++|++|++|+-+|.+|.+-..-. ..... .+.....--=
T Consensus 242 ~kile~k~kg~~Pf~vnaTaG---TTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS--~k~R~--kl~Giera~S 314 (510)
T KOG0629|consen 242 KKILEAKAKGGVPFFVNATAG---TTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMS--RKHRH--KLTGIERANS 314 (510)
T ss_pred HHHHHHHhcCCCCeEEEecCC---ceeeeccCcHHHHHHHHHhcCEEEEeecccccccccC--hhhHh--hccCccccCc
Confidence 998765322 333333222 3233345788899999999999999999986632211 11111 1222222224
Q ss_pred EEecccccccccCCcccEE
Q 013839 264 CAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~ 282 (435)
+..+..|.+| ..+.++..
T Consensus 315 vtwnpHK~~g-aplqCsa~ 332 (510)
T KOG0629|consen 315 VTWNPHKLMG-APLQCSAF 332 (510)
T ss_pred eeecHHHhhc-CcchhhHH
Confidence 5567788888 55666554
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=59.90 Aligned_cols=215 Identities=12% Similarity=0.113 Sum_probs=116.7
Q ss_pred ChHhHHHHhhcCC---CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh
Q 013839 181 DFAALMDDIKNAP---DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256 (435)
Q Consensus 181 d~e~l~~~i~~~~---~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 256 (435)
+++++++.|.+.. ....++++..-+...|... +++-.+.|.+++++|++.+|+||+..+.+-.+ +.|.-..+.
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG---k~WaHehw~ 330 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG---KFWAHEHWN 330 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC---ceeeehhcC
Confidence 4566777766542 3456777766677777654 88889999999999999999999976665543 233322221
Q ss_pred hcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
-....+ +-+|||-|- .| ||.. +++ ++..-.-.+...|.+-|.-. ..+..++..- ..+
T Consensus 331 l~~PpD--~vTFSKK~q-~g---Gffh----~~~----frpn~pYrifNTWmGdP~k~-lll~~vv~~I--------~~~ 387 (484)
T KOG1405|consen 331 LDSPPD--VVTFSKKFQ-TG---GFFH----DEE----FRPNEPYRIFNTWMGDPSKN-LLLEEVVQEI--------KRE 387 (484)
T ss_pred CCCCcc--ceehhhhhh-cC---cccc----Ccc----cCCCchHHHhhhhcCChHHH-HHHHHHHHHH--------hHH
Confidence 111112 336898886 44 5553 554 44321111122333333221 1111222110 012
Q ss_pred HHHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC-C---HHHHHHHhhhccEEEeCCC----cEEecc-CC
Q 013839 337 IMADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL-T---PYQVDRLAKEFHIYMTQDG----RISMAG-VT 405 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~-~---~~~~~~ll~~~gI~i~pgg----Ris~~~-~~ 405 (435)
...+.....-+.|...|.++ ..|..+.-.+..|.|..| ++ + .+.+...++-.|+-+-.+| |+..+- ..
T Consensus 388 ~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~-d~ps~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~ 466 (484)
T KOG1405|consen 388 DLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAW-DCPSGSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFR 466 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEE-eCCChHHHHHHHHHHHHcCceecccccceeeeccceeeh
Confidence 23334444555666666544 233345555565554444 43 2 2344445566899987666 664321 15
Q ss_pred CCcHHHHHHHHHHHHHh
Q 013839 406 TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~ 422 (435)
+.-.+-+++++.+++..
T Consensus 467 ~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 467 KHHADIFLDIFDKILAG 483 (484)
T ss_pred hhhHHHHHHHHHHHhcc
Confidence 55567788888887753
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0094 Score=57.11 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=66.5
Q ss_pred EEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 146 IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 146 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
+...+-+...........|.+...++. |+ +++++.+.|.+++.++ +-.+.+++.+ . --||. -..+++++|..
T Consensus 185 ~Y~SDqahssveka~~i~~VklR~l~t-d~-n~~mr~~~L~~AIe~D~arGlIPf~v~at-~-GTT~~-ca~D~l~elg~ 259 (511)
T KOG0628|consen 185 AYCSDQAHSSVEKACLIAGVKLRALPT-DE-NFGMRGDTLRKAIEEDIARGLIPFFVCAT-L-GTTSS-CAFDELEELGP 259 (511)
T ss_pred EEecCcccchHHHhHhhcceeEEEeec-cc-CcCCCHHHHHHHHHHHHhCCCccEEEEEe-e-cCccc-cccccHHHhcc
Confidence 345556666777777777888888887 34 8999999999999864 1223333332 1 12222 24578999999
Q ss_pred HHHhcCceeeeeccCCCccCC
Q 013839 223 QFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 223 ~~~~~~~~vi~Deay~~~~~~ 243 (435)
+|+++|+|+-+|.+|++-.+.
T Consensus 260 Vc~~~glWLHVDAAYAGsa~i 280 (511)
T KOG0628|consen 260 VCREEGLWLHVDAAYAGSAFI 280 (511)
T ss_pred hhhhcCEEEEeehhhcccccc
Confidence 999999999999999876654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.15 Score=54.53 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=128.3
Q ss_pred ecCCchhHHHHHHHHHHHhC-CCCEEEEcCCCChhhHHHHh----hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFH-PESHIYFPDPTWSNHHNIWR----DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+-.+++.+-+.+.......+ ...+|+|++-.++.+..+++ ..|++++. +++++.+. .++
T Consensus 146 l~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~---~~~ 209 (954)
T PRK12566 146 LLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAA---HAV 209 (954)
T ss_pred hccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCC---CCE
Confidence 34566665554421122211 14689999999988887766 33434332 33444443 457
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe---ccccccc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ---SYAKSMG 273 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---s~SK~~g 273 (435)
..+++.+|+ -.|.+ +++++|.+.++++|.++| +.+ ..+... +..-++...-+|+++ +|+=-+|
T Consensus 210 ~~v~vq~P~-~~G~i---~d~~~i~~~~h~~gal~~-~~~-d~laL~--------ll~~Pge~GADI~vG~~Q~fGvp~~ 275 (954)
T PRK12566 210 FGALLQYPD-THGEI---RDLRPLIDQLHGQQALAC-VAA-DLLSLL--------VLTPPGELGADVVLGSTQRFGVPMG 275 (954)
T ss_pred EEEEEECCC-CceEE---ccHHHHHHHHHHcCCEEE-EEe-CHHHHh--------CCCChhhcCCcEEeeCCCcCCCCCC
Confidence 788776664 35665 678899999999998865 333 112211 111122334456565 3444455
Q ss_pred ccCCcccEEEEEecChhHHHHH-----------------------H-HHHHHHhhccccCCChhH-HHHHHHHhC-Chhh
Q 013839 274 LYGHRVGCLSILCVDSKQAAAI-----------------------R-SQIQQIARAMYGSPPVHG-ILLVATILS-DPNL 327 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~-----------------------~-~~l~~~~~~~~~~~~~~~-q~~~~~~l~-~~~l 327 (435)
..|--.||+. + .++...++ . +.+++-+-.+..+.+... ..+++..+. .+
T Consensus 276 ~GGP~ag~~a--~-~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~G-- 350 (954)
T PRK12566 276 YGGPHAAYFA--C-RDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHG-- 350 (954)
T ss_pred CCCCCeeeee--e-hHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhC--
Confidence 5676678884 2 44411110 0 011111111112222111 111111111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec--CC--CHHHHHHHhhhccEEEeCC--CcEEe
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--GL--TPYQVDRLAKEFHIYMTQD--GRISM 401 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~--~~~~~~~ll~~~gI~i~pg--gRis~ 401 (435)
.+.++++.++...+..++.+.|++.|. +.... .||--+ .+ ..+.+.....+.||-++-- +++++
T Consensus 351 ----p~Gl~~ia~~~~~~a~~l~~~l~~~g~----~~~~~--~fF~~~~v~~~~~~~~~~~~a~~~~~n~r~~~~~~~~~ 420 (954)
T PRK12566 351 ----PEGLKRIAQRVHRLTAILAAGLEAKGI----KRLNR--HFFDTLTLEVGGAQAAIIESAEAARINLRILGRGRLGV 420 (954)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHhcCC----ccccC--CccceEEEEccCCHHHHHHHHHHCCCeeEEeCCCeEEE
Confidence 156788888888898999999988774 22211 333322 22 3444433334567777643 44444
Q ss_pred c--c-CCCCcHHHHHHHHH
Q 013839 402 A--G-VTTGNVNYLANAIH 417 (435)
Q Consensus 402 ~--~-~~~e~i~~~~~~l~ 417 (435)
+ - .+.+++..++..+.
T Consensus 421 s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 421 SLDETCDEATVARLFDIFL 439 (954)
T ss_pred EeCCCCCHHHHHHHHHHhc
Confidence 3 2 25567777777663
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.028 Score=50.00 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=96.5
Q ss_pred hhCCCCeeeee-ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHhcCceeeeeccC
Q 013839 161 RDAQIPERTYH-YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVD--PTEEQWREISYQFKVKGHFPFFDMAY 237 (435)
Q Consensus 161 ~~~g~~~~~v~-~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~--~~~~~l~~i~~~~~~~~~~vi~Deay 237 (435)
--+|++++.+. ..+.+.-.-|++..++.+++-++.. ++++ +..|... -+++.+++|..+|..|+++-|+..+|
T Consensus 121 ~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dc-ilci---~sttscfapr~pd~leaiaaica~~diphivnnay 196 (432)
T KOG3843|consen 121 IHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDC-ILCI---HSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAY 196 (432)
T ss_pred HhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCce-EEEE---eecccccCCCCCchHHHHHHHHHccCchhhhcccc
Confidence 35788877763 3233334557888888887654443 3333 3333322 25678999999999999999999997
Q ss_pred CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHH
Q 013839 238 QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL 317 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~ 317 (435)
.--.. +....+....+-+.-.-++.|+-|.|-.| +|-.++.+-++. ++..+.+......+..|+.....
T Consensus 197 glqse----e~i~~iaa~~~~grida~vqsldknf~vp---vggaiia~fk~n----~iq~iak~ypgrasa~ps~dlli 265 (432)
T KOG3843|consen 197 GLQSE----ECIHKIAAAAECGRIDAFVQSLDKNFMVP---VGGAIIAAFKDN----FIQEIAKMYPGRASASPSLDLLI 265 (432)
T ss_pred ccchH----HHHHHHHHHhhhccHHHHHHHhhhcceee---cchhHhhHhHHH----HHHHHHHhCCCccccCccHHHHH
Confidence 42211 12233444344455556788999998655 343332233444 66666654333333344443333
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
....+.... |.+-..+.++-+...++.+...-+.+
T Consensus 266 tll~~gqn~----f~e~~~eqkemf~~l~~ki~~~ae~~ 300 (432)
T KOG3843|consen 266 TLLSLGQNA----FKELFGEQKEMFLKLRNKIIKFAEAI 300 (432)
T ss_pred HHHHhchhH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333 22333344444444444444333333
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.084 Score=57.46 Aligned_cols=240 Identities=8% Similarity=-0.007 Sum_probs=142.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
..-.||+... +.....-.+.+......+.......|.++.|...+|..||.++...+..++++++|+ +.++-..|
T Consensus 387 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 461 (1082)
T PLN02672 387 SGSLDLSFED---ESVADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVV--VFPSRAVA 461 (1082)
T ss_pred hhhccccccc---cccchhhccHHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceE--EeccHHHH
Confidence 3455666443 111122233445455666555567799999999999999999966666678899999 89999999
Q ss_pred HHHHHHH----HHHhCCCCEEEEcCCCChhhHHHHhhCC--------CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 130 CRLFAEF----QRRFHPESHIYFPDPTWSNHHNIWRDAQ--------IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 130 ~~~~~~~----~~~~~~gd~Vlv~~p~y~~~~~~~~~~g--------~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
++.++.+ ++++..+.+-.+|. . +...+...| -.+..+.. +. + -+.+.+.+++ -+++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~--~~~~~~~~~~--~~~~ 529 (1082)
T PLN02672 462 IENALRLFSPRLAIVDEHLTRWLPK-K---WLTSLAIENATSDSKSDDVITVIEA--PR--Q--SDLVIELIKK--LKPQ 529 (1082)
T ss_pred HHHHHHhhChHHHhhhhhhhccCCH-H---HHhHhhhhcccccCccCCeEEEEeC--CC--c--chHHHHHHHh--CCCe
Confidence 9887532 33444443333331 2 222222222 11111111 11 1 1244444543 2456
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeecc-CCCccCCCCcccHHHHHHhhh--cCCeEEEEecccccccc
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMA-YQGFASGDLDKDAQAIRIFLE--DEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Dea-y~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~g~ 274 (435)
+++..-.+ +-..+-...+.|.+.+++-|+.++.|.. |..++..+ .....+..+.. .+.+..++.++-|.-=.
T Consensus 530 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1082)
T PLN02672 530 VVVTGMAD---FEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLP--GSNGVLKYLAGHPLPSHAAIICGLVKNQVY 604 (1082)
T ss_pred EEEEeccc---hhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCC--CcccHHHHhcCCCCCcchhHhhhhhhcccc
Confidence 77754333 2334566788999999999999999998 44444332 23333333332 34566677788887656
Q ss_pred cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHH
Q 013839 275 YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL 317 (435)
Q Consensus 275 ~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~ 317 (435)
+.+-+.+++ .-++. +.+.+.+......++.+.++|..
T Consensus 605 ~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 641 (1082)
T PLN02672 605 SDLEVAFVI--SENEA----VLKALSKTGEVLEGRTAIISQFY 641 (1082)
T ss_pred ccceEEEEe--cCcHH----HHHHHHHHHHhhccchHHHHHHH
Confidence 899999996 44666 66666665555555666666654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.053 Score=54.26 Aligned_cols=143 Identities=13% Similarity=0.008 Sum_probs=94.3
Q ss_pred CCCCCC---CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHH-HHHHH-hCCC---C-EEEEcCCCChh
Q 013839 85 FLESIS---ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFA-EFQRR-FHPE---S-HIYFPDPTWSN 155 (435)
Q Consensus 85 ~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~-~~~~~-~~~g---d-~Vlv~~p~y~~ 155 (435)
++.|.| .+|+.++.+.+.+.+-...+. +++. ..-++|.++-..-+ .+.+- -..| . .-++|...++.
T Consensus 568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s-~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGT 642 (1001)
T KOG2040|consen 568 IHPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFS-LQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGT 642 (1001)
T ss_pred CCCCCchHHHhhHHHHHHHHHHHhheeecc----ccee-ecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCC
Confidence 556766 468888888888887322221 1222 13344433322221 12222 2233 2 34677777766
Q ss_pred hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeec
Q 013839 156 HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDM 235 (435)
Q Consensus 156 ~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~De 235 (435)
....+.++|+++++|.+ ..++.+|..+|+++.+++.+.-.++.+. .|+-.-.=.+.+++++++.++||--|..|.
T Consensus 643 NPASA~MagmkvvpV~~--~~~G~id~~dLk~kaekh~~~Laa~MvT---YPST~GvfE~~i~d~cd~iHehGGQVYlDG 717 (1001)
T KOG2040|consen 643 NPASAAMAGMKVVPVGC--DANGNIDMVDLKAKAEKHKDNLAALMVT---YPSTHGVFEEGIDDICDIIHEHGGQVYLDG 717 (1001)
T ss_pred ChhhHHhcCCEEEEeec--cCCCCccHHHHHHHHHHhhhhhheeEEe---cccccccccccHHHHHHHHHhcCCEEEecC
Confidence 66778899999999987 4567899999999998776666666664 444343446778999999999999999999
Q ss_pred cC
Q 013839 236 AY 237 (435)
Q Consensus 236 ay 237 (435)
+-
T Consensus 718 AN 719 (1001)
T KOG2040|consen 718 AN 719 (1001)
T ss_pred CC
Confidence 84
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.5 Score=39.82 Aligned_cols=311 Identities=15% Similarity=0.128 Sum_probs=150.3
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCC-----CCCCCcc--cHHHHHHHHHhHcCCCCccccCC--C
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFL-----ESISASV--STKMVEESVKLVYGKDSDVVKEG--R 117 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~--~ 117 (435)
...+++|+.|.. ..|..++.++.+.+.+ +... +..+.++ +-.--+...+.|.+. |+ +
T Consensus 5 ~~~vvnFaaGPA------klp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlni------Pdn~~ 72 (370)
T KOG2790|consen 5 PERVVNFAAGPA------KLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNI------PDNYK 72 (370)
T ss_pred ccceeecCCCcc------cCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcC------CCcee
Confidence 457889998873 4556666666666652 2111 1112111 111111222222333 22 2
Q ss_pred eeeEecCCchhHHHHHHHHHHHh--CCC---CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCC--CCcChHhHHHHhh
Q 013839 118 SAGVQALSGTGACRLFAEFQRRF--HPE---SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDS--KSLDFAALMDDIK 190 (435)
Q Consensus 118 v~~~~t~gg~~a~~~~~~~~~~~--~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~--~~~d~e~l~~~i~ 190 (435)
|. .+-.||++-+..+ .+.++ ..| |-|+..+.+-..+.++-+..-...+..+.. +.. --+|.+.++-.
T Consensus 73 vl-f~QGGGt~qFaAv--~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k-~y~ygkvPd~~~w~~~-- 146 (370)
T KOG2790|consen 73 VL-FLQGGGTGQFAAV--PLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLK-SYTYGKVPDPSTWELN-- 146 (370)
T ss_pred EE-EEeCCCccccccc--chhhhccccCCccceEEeccccHHHHHHHHhhCCceEEecccc-ccccCcCCChhhcccC--
Confidence 33 1355667666555 44444 455 455555444444444433322223333331 212 23444443221
Q ss_pred cCCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 191 NAPDSSFFLLHPSAHNPT--GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPt--G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
++...+..| .|.| |+-++.-. .-.-++.+++.|.. +.|..-+. +....-+++.+.
T Consensus 147 ---~da~yvyyC--aNETVHGVEf~~~P------~~~~~~~vlVaDmS-SnflSrpv-----------Dvsk~gvi~aGA 203 (370)
T KOG2790|consen 147 ---PDASYVYYC--ANETVHGVEFDFIP------VNDPKGAVLVADMS-SNFLSRPV-----------DVSKFGVIFAGA 203 (370)
T ss_pred ---CCccEEEEe--cCceeeceecCCCC------CCCCCCceEEEecc-cchhcCCc-----------cchhcceEEecc
Confidence 344555554 4555 55443211 11235788888887 33332211 223445677889
Q ss_pred cccccccCCcccEEEEEecChhHHHHHHHHHHHH------------hhccccCCChhHHHHHHHHh----CChhhHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI------------ARAMYGSPPVHGILLVATIL----SDPNLKSLWI 332 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~q~~~~~~l----~~~~l~~~~~ 332 (435)
.|.+|++|+-+ .+ . .++ ++...... ....+..+|.++.++....+ +.+
T Consensus 204 QKN~G~aG~Tv-vi---v-r~d----llg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~G------- 267 (370)
T KOG2790|consen 204 QKNVGPAGVTV-VI---V-RKD----LLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKG------- 267 (370)
T ss_pred ccccCccccEE-EE---E-ehh----hhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcc-------
Confidence 99999888643 22 1 555 44333221 11334556666555543333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccc-cccC--cceeEecC-----CCHHHHHHHhhhccEEEeCC-----C-
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEH-ITNQ--LGMFCFSG-----LTPYQVDRLAKEFHIYMTQD-----G- 397 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~-~~~~--~g~~~~~~-----~~~~~~~~ll~~~gI~i~pg-----g- 397 (435)
.++.+.+...++.+.+++.+... |+ ..+ ..+. .-|-+... +..+++....+ ++..-..| |
T Consensus 268 -Gl~a~e~~n~~KskllYd~iD~s~gf---y~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~-~~mv~LKGhRSVGGi 342 (370)
T KOG2790|consen 268 -GLAAMEKLNQEKSKLLYDAIDNSNGF---YRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAK-EHMVQLKGHRSVGGI 342 (370)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhcCCe---EEcccchhhhhhcccceeecchHHHHHHHHHHHH-hhhhccccccccccc
Confidence 25666677778888999998765 32 111 1111 11111111 23456655544 45444444 3
Q ss_pred cEEeccC-CCCcHHHHHHHHHHHHH
Q 013839 398 RISMAGV-TTGNVNYLANAIHEVTR 421 (435)
Q Consensus 398 Ris~~~~-~~e~i~~~~~~l~~~l~ 421 (435)
|-|+.+. +-++.+.+++-++++.+
T Consensus 343 RASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 343 RASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred hhhhhccccHHHHHHHHHHHHHHHH
Confidence 8887653 66777777666666543
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.80 E-value=7.9 Score=35.74 Aligned_cols=297 Identities=15% Similarity=0.125 Sum_probs=158.5
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCC---CEEEEcCCCCh----hhHHHHhhCCCCe
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE---SHIYFPDPTWS----NHHNIWRDAQIPE 167 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g---d~Vlv~~p~y~----~~~~~~~~~g~~~ 167 (435)
......++..+ |.. +++|. +.++-|--++.+ +.++..|- -+++.+.-.|+ ...+.++..|..+
T Consensus 114 e~il~l~~~iV-GA~-----e~Eva--vmNsLTvNlh~L--l~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~ 183 (465)
T KOG3846|consen 114 EPILPLLAPIV-GAQ-----ENEVA--VMNSLTVNLHSL--LISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISP 183 (465)
T ss_pred hhhhhhhhhhc-cCC-----chhhh--hHhhhhhHHHHH--HHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCCh
Confidence 34445555554 332 56777 666666666666 66677765 35777765553 3445666777764
Q ss_pred ee--eeecC-CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 168 RT--YHYYD-PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 168 ~~--v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
.. +.+.+ +....+..+++.+.|+++.+...+++++-.+.=||..++.. +|...-+..|++|=.|-++. ++-
T Consensus 184 e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~---aIT~Agq~kgc~VGfDLAHA-vgN-- 257 (465)
T KOG3846|consen 184 ENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIG---AITFAGQFKGCLVGFDLAHA-VGN-- 257 (465)
T ss_pred HHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchh---hhhhcccCCCcEechhhhhh-hcC--
Confidence 32 12211 22246778999999988877888999999999999998654 66654555688888888742 221
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccc--cccCCcccEEEEEecChhHHHHHHHHHHHH--------------------
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSM--GLYGHRVGCLSILCVDSKQAAAIRSQIQQI-------------------- 302 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~--g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-------------------- 302 (435)
. ++ .+.+ .+-.+.++..-|.+ |..| +|-+.+ .+++......++.-.
T Consensus 258 V-----pL-~LHd-WgVDFACWCSYKYlnaGaGg--IgGlFv---Hekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipG 325 (465)
T KOG3846|consen 258 V-----PL-QLHD-WGVDFACWCSYKYLNAGAGG--IGGLFV---HEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPG 325 (465)
T ss_pred C-----ce-EEee-cCCceEEEeeecccccCCCc--cceeee---ehhhhcchhhHHhhhccCCcchhhhhccccccCcc
Confidence 1 11 1111 23345555555654 3223 343332 344333232222210
Q ss_pred -hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--------Ccccccc----Cc
Q 013839 303 -ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL--------NWEHITN----QL 369 (435)
Q Consensus 303 -~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~----~~ 369 (435)
.....+++|.+...++...| +++.++ .+++.|++-.-...++...++...+.. .+..++| +.
T Consensus 326 a~GfRiSNPpi~~v~al~~SL---e~F~q~--~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~er 400 (465)
T KOG3846|consen 326 ALGFRISNPPIIDVVALRSSL---ELFAQF--NINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDER 400 (465)
T ss_pred ccccccCCCcHhHHHHHHhhH---HHHHHh--hHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccc
Confidence 01122455555444443333 333332 255565555555555554444332110 1112222 11
Q ss_pred ceeEec--CCCHHHHHHHhhhccEEEe---CCC-cEEeccC--CCCcHHHHHHHHHHHHHhhh
Q 013839 370 GMFCFS--GLTPYQVDRLAKEFHIYMT---QDG-RISMAGV--TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 370 g~~~~~--~~~~~~~~~ll~~~gI~i~---pgg-Ris~~~~--~~e~i~~~~~~l~~~l~~~~ 424 (435)
|.-+-+ ..+...+...|.++|+..- |.+ |+....+ +..++..++..|.+++..+.
T Consensus 401 GcQLsl~Fssp~~~vfqeL~krGv~~DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 401 GCQLSLYFSSPTPKVFQELHKRGVIGDKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred cceEEEEeCCCchHHHHHHHHcCeeccccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 222222 2223344334467899884 445 8874221 67889999999999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 435 | ||||
| 3pd6_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 1e-116 | ||
| 3hlm_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 1e-116 | ||
| 7aat_A | 401 | X-Ray Structure Refinement And Comparison Of Three | 1e-115 | ||
| 1aka_A | 401 | Structural Basis For The Catalytic Activity Of Aspa | 1e-114 | ||
| 2cst_A | 411 | Crystal Structure Of The Closed Form Of Chicken Cyt | 2e-91 | ||
| 1aat_A | 411 | Oxoglutarate-Induced Conformational Changes In Cyto | 1e-90 | ||
| 1ajs_A | 412 | Refinement And Comparison Of The Crystal Structures | 3e-89 | ||
| 1ajr_A | 412 | Refinement And Comparison Of The Crystal Structures | 1e-88 | ||
| 3ii0_A | 422 | Crystal Structure Of Human Glutamate Oxaloacetate T | 9e-88 | ||
| 1yaa_A | 412 | Aspartate Aminotransferase From Saccharomyces Cerev | 3e-84 | ||
| 4eu1_A | 409 | Structure Of A Mitochondrial Aspartate Aminotransfe | 3e-83 | ||
| 3meb_A | 448 | Structure Of Cytoplasmic Aspartate Aminotransferase | 1e-75 | ||
| 1b4x_A | 396 | Aspartate Aminotransferase From E. Coli, C191s Muta | 5e-74 | ||
| 4f5m_A | 406 | Wild-type E. Coli Aspartate Aminotransferase: A Tem | 1e-73 | ||
| 1asl_A | 396 | Crystal Structures Of Escherichia Coli Aspartate Am | 2e-73 | ||
| 4h51_A | 420 | Crystal Structure Of A Putative Aspartate Aminotran | 2e-73 | ||
| 1aam_A | 396 | The Structural Basis For The Altered Substrate Spec | 2e-73 | ||
| 1qir_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 3e-73 | ||
| 1qis_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 3e-73 | ||
| 1ix6_A | 396 | Aspartate Aminotransferase Active Site Mutant V39f | 4e-73 | ||
| 1qit_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 5e-73 | ||
| 1asf_A | 396 | The Structural Basis For The Reduced Activity Of Th | 6e-73 | ||
| 2aat_A | 396 | 2.8-Angstroms-Resolution Crystal Structure Of An Ac | 9e-73 | ||
| 2q7w_A | 396 | Structural Studies Reveals The Inactivation Of E. C | 9e-73 | ||
| 1aia_A | 396 | Structural Basis For The Catalytic Activity Of Aspa | 1e-72 | ||
| 1g4x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 2e-72 | ||
| 1asb_A | 396 | The Structural Basis For The Reduced Activity Of Th | 2e-72 | ||
| 3aat_A | 396 | Activity And Structure Of The Active-Site Mutants R | 2e-72 | ||
| 2d5y_A | 396 | Aspartate Aminotransferase Mutant Mc With Isovaleri | 2e-72 | ||
| 1ahy_A | 396 | Aspartate Aminotransferase Hexamutant Length = 396 | 2e-72 | ||
| 1ix8_A | 396 | Aspartate Aminotransferase Active Site Mutant V39fN | 4e-72 | ||
| 1g4v_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 5e-72 | ||
| 2d61_A | 396 | Aspartate Aminotransferase Mutant Ma With Maleic Ac | 6e-72 | ||
| 1bqa_A | 396 | Aspartate Aminotransferase P195a Mutant Length = 39 | 8e-72 | ||
| 3zzj_A | 396 | Structure Of An Engineered Aspartate Aminotransfera | 8e-72 | ||
| 1ari_A | 396 | Aspartate Aminotransferase, W140h Mutant, Maleate C | 8e-72 | ||
| 4f5f_A | 406 | Structure Of Aspartate Aminotransferase Conversion | 1e-71 | ||
| 1g7x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 1e-71 | ||
| 1g7w_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 1e-71 | ||
| 1toe_A | 396 | Unliganded Structure Of Hexamutant + A293d Mutant O | 1e-71 | ||
| 1arh_A | 396 | Aspartate Aminotransferase, Y225rR386A MUTANT Lengt | 2e-71 | ||
| 1toj_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept Mutant | 4e-71 | ||
| 4f5h_A | 406 | Intercoversion Of Substrate Specificity: E. Coli As | 5e-71 | ||
| 1bqd_A | 396 | Aspartate Aminotransferase P138aP195A DOUBLE MUTANT | 6e-71 | ||
| 2d66_A | 396 | Aspartate Aminotransferase Mutant Mab Length = 396 | 6e-71 | ||
| 1tog_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept + A293 | 7e-71 | ||
| 4f5i_A | 406 | Substrate Specificity Conversion Of E. Coli Pyridox | 1e-70 | ||
| 4f5j_A | 406 | Rational Design And Directed Evolution For Conversi | 2e-70 | ||
| 4f5g_A | 406 | Rational Design And Directed Evolution Of E. Coli A | 5e-70 | ||
| 1czc_A | 396 | Aspartate Aminotransferase Mutant Atb17139S142N WIT | 5e-70 | ||
| 4f5k_A | 406 | Substrate Specificity Conversion Of Aspartate Amino | 7e-70 | ||
| 2d64_A | 396 | Aspartate Aminotransferase Mutant Mabc With Isovale | 1e-69 | ||
| 1yoo_A | 396 | Aspartate Aminotransferase Mutant Atb17 With Isoval | 6e-69 | ||
| 3tat_A | 397 | Tyrosine Aminotransferase From E. Coli Length = 397 | 2e-68 | ||
| 3fsl_A | 397 | Crystal Structure Of Tyrosine Aminotransferase Trip | 1e-67 | ||
| 4f4e_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 7e-65 | ||
| 4eff_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 7e-65 | ||
| 1ay4_A | 394 | Aromatic Amino Acid Aminotransferase Without Substr | 8e-63 | ||
| 3uak_A | 406 | Crystal Structure Of De Novo Designed Cysteine Este | 2e-58 | ||
| 3k7y_A | 405 | Aspartate Aminotransferase Of Plasmodium Falciparum | 1e-42 |
| >pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401 | Back alignment and structure |
|
| >pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401 | Back alignment and structure |
|
| >pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401 | Back alignment and structure |
|
| >pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401 | Back alignment and structure |
|
| >pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411 | Back alignment and structure |
|
| >pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411 | Back alignment and structure |
|
| >pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422 | Back alignment and structure |
|
| >pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412 | Back alignment and structure |
|
| >pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409 | Back alignment and structure |
|
| >pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448 | Back alignment and structure |
|
| >pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406 | Back alignment and structure |
|
| >pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396 | Back alignment and structure |
|
| >pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420 | Back alignment and structure |
|
| >pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396 | Back alignment and structure |
|
| >pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396 | Back alignment and structure |
|
| >pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396 | Back alignment and structure |
|
| >pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396 | Back alignment and structure |
|
| >pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396 | Back alignment and structure |
|
| >pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396 | Back alignment and structure |
|
| >pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396 | Back alignment and structure |
|
| >pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396 | Back alignment and structure |
|
| >pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396 | Back alignment and structure |
|
| >pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396 | Back alignment and structure |
|
| >pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396 | Back alignment and structure |
|
| >pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396 | Back alignment and structure |
|
| >pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406 | Back alignment and structure |
|
| >pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396 | Back alignment and structure |
|
| >pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396 | Back alignment and structure |
|
| >pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406 | Back alignment and structure |
|
| >pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396 | Back alignment and structure |
|
| >pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406 | Back alignment and structure |
|
| >pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406 | Back alignment and structure |
|
| >pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406 | Back alignment and structure |
|
| >pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396 | Back alignment and structure |
|
| >pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406 | Back alignment and structure |
|
| >pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397 | Back alignment and structure |
|
| >pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420 | Back alignment and structure |
|
| >pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420 | Back alignment and structure |
|
| >pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394 | Back alignment and structure |
|
| >pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406 | Back alignment and structure |
|
| >pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 435 | |||
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 0.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 0.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 0.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 0.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 0.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 0.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 0.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 0.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 0.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 0.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 0.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 1e-180 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 1e-120 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 |
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 618 bits (1595), Expect = 0.0
Identities = 146/420 (34%), Positives = 223/420 (53%), Gaps = 2/420 (0%)
Query: 3 WRYLTRAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRD 62
+ T ++ + V A +DPI G+ EAF AD P K+NLGVG Y +
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTN 61
Query: 63 DKGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121
+ G+ +L+ VR+AE + + KL+ G DS ++ GR
Sbjct: 62 EDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTA 121
Query: 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181
QAL GTGA ++ A+F R +P++ + DP+W NH ++ A Y YYD + ++
Sbjct: 122 QALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVN 181
Query: 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241
F ++ + + +LH HNPTGVD + QW ++ K + PF D+AYQGF
Sbjct: 182 FDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFG 241
Query: 242 SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301
++ DA A+R+F + + S++KS LYG RVG LSI+ +AA + SQ+++
Sbjct: 242 ES-IEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKR 300
Query: 302 IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN 361
+ R Y +PP HG +VA +L+ P L++ W+ E+ M DRI+ R L + L+ G +
Sbjct: 301 VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERD 360
Query: 362 WEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+ I Q GMF +SGLT QVDRL +EF IY GRI +A + T N++ +ANAI V +
Sbjct: 361 FSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAAVLK 420
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 616 bits (1590), Expect = 0.0
Identities = 204/399 (51%), Positives = 271/399 (67%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL CVR+AEA IA +
Sbjct: 3 WWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK 62
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
E + + S +L G++S+ K GR VQ +SGTG+ R+ A F +RF
Sbjct: 63 MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKF 122
Query: 144 SH-IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
S +Y P P+W NH I+RDA + + Y YYDP + SLDF M+DI P+ S LLH
Sbjct: 123 SRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA 182
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP +EQW+E++ K + +FDMAYQGFASGD+++DA A+R F+E +
Sbjct: 183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
+QSYAK+MGLYG R G +++C D+++A + SQ++ + R MY +PP++G + + IL
Sbjct: 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 302
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+GL P QV
Sbjct: 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQV 362
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGV + NV YLA+AIH+VT+
Sbjct: 363 ERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 401
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 613 bits (1583), Expect = 0.0
Identities = 161/414 (38%), Positives = 235/414 (56%), Gaps = 19/414 (4%)
Query: 16 HTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVRE 75
H + + DPI G+ + F DP+ K+NL +G YRDD +P VL+CV++
Sbjct: 7 HHMGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQ 66
Query: 76 AEAK-------IAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128
A + G VEE+ KL +G +++GR A Q L GTG
Sbjct: 67 ATLGTNMDYAPVTGIA-----------SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115
Query: 129 ACRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMD 187
A R+ + RF + IY PD + NH +I+ A + Y YYDP +K L+ A +++
Sbjct: 116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLE 175
Query: 188 DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247
+ AP+ S L+H AHNPTGVDPT + WR++ K + H PF DMAYQGFA+G LD
Sbjct: 176 CLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDY 235
Query: 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY 307
DA R ++ + AQS++K+ GLYGHR G L I +++A + SQ+ + R MY
Sbjct: 236 DAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMY 295
Query: 308 GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367
+PP++G +V++IL DP L +LW E+K M+ RI R L L+ GS +W HI
Sbjct: 296 NNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER 355
Query: 368 QLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
Q+GM ++GLT QV+ L E+HIYMT +GR +++G+ + NV Y++ AIH VT+
Sbjct: 356 QVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVTK 409
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 608 bits (1569), Expect = 0.0
Identities = 145/396 (36%), Positives = 212/396 (53%), Gaps = 3/396 (0%)
Query: 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF 85
+ V A DPI + E F DP K+NL +G Y ++ G LQ V EAEA++
Sbjct: 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 86 L--ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
+ L++G D V+K+ R A +Q L G+GA ++ A+F +R+ PE
Sbjct: 62 GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 144 SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203
S ++ DPTW NH I+ A TY +YD + + F L+ +K S LLHP
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181
Query: 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263
HNPTG D T +QW + K + PF D+AYQGF +G +++DA AIR
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323
+ S++K LYG RVG LS++C D++ A + Q++ R Y SPP G +VA +L+
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300
Query: 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVD 383
D LK+ W+ EV+ M RI R L + L N++++ NQ GMF ++GL+ QVD
Sbjct: 301 DEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVD 360
Query: 384 RLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
RL +EF +Y+ GR+ +AG+ T NV +A A V
Sbjct: 361 RLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAV 396
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 174/408 (42%), Positives = 244/408 (59%), Gaps = 8/408 (1%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
+ V A + + F DP P K+NLGVGAYR D +P VL VR+ E +IA +
Sbjct: 5 VFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS 64
Query: 85 FL--ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH- 141
L E + + + +L G DS ++E R GVQ+L GTGA R+ AEF R++
Sbjct: 65 SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYN 124
Query: 142 ----PESHIYFPDPTWSNHHNIWRDAQIPE-RTYHYYDPDSKSLDFAALMDDIKNAPDSS 196
++ +Y PTW NH+ ++ A + R+Y Y+D + + LD + D++NAP+ S
Sbjct: 125 GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFS 184
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
F+LH AHNPTG DPT EQW++I+ K + FPFFD AYQGFASG+L+KDA AIR F+
Sbjct: 185 IFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFV 244
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGIL 316
+ + CAQS++K+ GLY RVG L+++ + + SQ+Q+I R + +PP G
Sbjct: 245 SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGAR 304
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+VA LSDP L W VK MADRI R+ LR LE L + W HIT+Q+GMF F+G
Sbjct: 305 IVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTG 364
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRSEQ 424
L P QV+ L + HIY+ GRI+M G+TT N++Y+A +IHE Q
Sbjct: 365 LNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKIQ 412
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 606 bits (1566), Expect = 0.0
Identities = 161/406 (39%), Positives = 235/406 (57%), Gaps = 9/406 (2%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
++++ D + G+ + + D K++LG+GAYRDD G+P VL V+ AE I
Sbjct: 4 LFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS 63
Query: 85 FL--ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP 142
E + + + + K+++G SD ++E R VQ+LSGTGA + A+F +F P
Sbjct: 64 SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFP 123
Query: 143 ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
+ +Y PTW+NH I+ + + TY Y+ ++KSLD ++ I+ AP+ S F+LH
Sbjct: 124 DKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHS 183
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTG+DPT EQW +I K H FD AYQGFA+GDLDKDA A+R+ +E +
Sbjct: 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTV 243
Query: 263 G---CAQSYAKSMGLYGHRVGCLSILCV----DSKQAAAIRSQIQQIARAMYGSPPVHGI 315
QS+AK+ G+YG RVGC + + A+ SQ+ +I R+ +PP +G
Sbjct: 244 SPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGA 303
Query: 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS 375
+VA +L P L W ++ M+ RI + R LR +L KLG+ NW+HI NQ GMF F+
Sbjct: 304 KIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFT 363
Query: 376 GLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
GLTP V RL + +Y+ GR S+AG+ GNV Y+A AI EV R
Sbjct: 364 GLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVR 409
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 602 bits (1554), Expect = 0.0
Identities = 132/396 (33%), Positives = 202/396 (51%), Gaps = 5/396 (1%)
Query: 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF 85
++ P A D I + F ADP KI+LGVG Y+D G +++ V AE ++ +E
Sbjct: 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61
Query: 86 LES-ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
++ S + + +L+ G +K +A + + GTGA R E R +P+
Sbjct: 62 TKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDL 118
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
++ DPTW NH +I +P +TY Y+D +++ +DF + D+ A LLH
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTG + T +QW EI+ + G P D+AYQGF G L++DA R+ +
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLI 237
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
A S +K+ G+Y R GCL LC D+ + + + R Y PP HG +V+T+L+
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
P L++ W+ E++ + + R R L L L S + + GMF G TP QV R
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKR 357
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420
+ +EF IYM D RI++AG+ + LA AI EV
Sbjct: 358 IKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVG 393
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 601 bits (1552), Expect = 0.0
Identities = 109/402 (27%), Positives = 191/402 (47%), Gaps = 7/402 (1%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
+ D I F D KINL +G +D G + V A+ + +
Sbjct: 4 LLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENY 63
Query: 85 F-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE 143
+ + + + L++G +S +++ + +Q + GTGA + EF + + E
Sbjct: 64 KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNVE 123
Query: 144 SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203
+ +Y +P + NH N+ + +++D + +++ ++D++N P+ S +L S
Sbjct: 124 T-LYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQIS 182
Query: 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263
+NP V+ E+ + EI K H FD+AYQGF +L++D IR F E
Sbjct: 183 CYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFS 242
Query: 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323
QS++K+M LYG R G L I+C + ++ + + + I R Y SP +H ++ +L+
Sbjct: 243 VCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLN 302
Query: 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLE----KLGSSLNWEHITNQLGMFCFSGLTP 379
+ NLK WI E+ ++ RI R LE K + +W Q G+F F L
Sbjct: 303 NQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA 362
Query: 380 YQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+ L K HIY+ +GRI+++G+T NV+Y+A+ I
Sbjct: 363 KIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKICLSLS 403
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 598 bits (1544), Expect = 0.0
Identities = 147/395 (37%), Positives = 227/395 (57%), Gaps = 2/395 (0%)
Query: 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF 85
++++ A DPI G+ + F AD P KINLG+G Y+D+ G+ VL V++AE + +E
Sbjct: 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 86 LES-ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
++ + + + +L++GK S ++ + R+ Q GTGA R+ A+F +
Sbjct: 62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
++ +P+W NH +++ A + R Y YYD ++ +LDF AL++ + A L H
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTG+DPT EQW+ ++ KG P FD AYQGFA G L++DA+ +R F +
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
A SY+ + GLY RVG +++ DS+ SQ++ RA Y +PP HG +VATILS+
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
L+++W E+ M RIQR R L++ G++ ++ I Q GMF FSGLT QV R
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 360
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
L +EF +Y GR+++AG+T N+ L AI V
Sbjct: 361 LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAV 395
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 587 bits (1516), Expect = 0.0
Identities = 159/442 (35%), Positives = 239/442 (54%), Gaps = 22/442 (4%)
Query: 3 WRYLTRAARRCSVHTTSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRD 62
+ T ++ + + D I +T + AD +P K+NLGVGAYRD
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRD 61
Query: 63 DKGRPVVLQCVREAEAKIAGSEF---LESISASVSTKMVEESVKLVYGKDSDVVKEGRSA 119
+ G+P +L V+EAEA I+ E + +E + L++GKDS +EGR A
Sbjct: 62 ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIA 121
Query: 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTYHYYDP 175
Q+LSGTG+ + EF + P++ Y P TW NH+ I+ ++P + Y Y
Sbjct: 122 SCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK 181
Query: 176 DSK-SLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFD 234
D + +DF+ DI++AP+ S FL H AHNP+G+D TE QW+E+ K K H FFD
Sbjct: 182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD 241
Query: 235 MAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC-------- 286
AYQGFA+G + DA A+R+F++ + AQS++K+ GLYG R+GCL ++
Sbjct: 242 SAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVE 301
Query: 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346
+ +AA+ S + R + +HG +V I+ D L ++ D VK M+ RI R R
Sbjct: 302 KNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMR 361
Query: 347 TTLRQNLEKL-----GSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQ-DGRIS 400
+ L +L K GS W+HI +GMF F+GLTP VD L +++ IY+ + GR+S
Sbjct: 362 SLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMS 421
Query: 401 MAGVTTGNVNYLANAIHEVTRS 422
M G+T N +Y+A AIH+
Sbjct: 422 MCGLTESNCDYVAEAIHDAVTK 443
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 529 bits (1364), Expect = 0.0
Identities = 80/424 (18%), Positives = 144/424 (33%), Gaps = 28/424 (6%)
Query: 20 SRTVGWWDHVAPAAKDPINGVTEAFLA----DPSPYKINLGVGAYRDDKGRPVVLQCVRE 75
+V KD I A + +N +GA D++G V L+ V+E
Sbjct: 4 MTSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKE 63
Query: 76 AEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAE 135
++ SE + + + + K +G EG + GTG
Sbjct: 64 EYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFR---PEGHIRSIATAGGTGGIHHLIH 120
Query: 136 FQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK--SLDFAALMDDIKNAP 193
P + D W + I D TY +D + F ++++
Sbjct: 121 N--YTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQ 178
Query: 194 DSSFFLLHPSAHNPTGVDPTEEQWREIS------YQFKVKGHFPFFDMAYQGFASGDLDK 247
+ + + +NPTG ++ W I D+AY + SG+ D+
Sbjct: 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDE 237
Query: 248 DAQAIRIF--LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA 305
F L E L S +K +YG RVG + + D + A + +RA
Sbjct: 238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRA 297
Query: 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365
+ + + +A I++DP + E I+ + +Q ++G +
Sbjct: 298 TWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG----LPML 353
Query: 366 TNQLGMFCFSGLTPYQ--VDRLAKE--FHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+ G F + L KE + I + RI+ G+ + LA I+ +
Sbjct: 354 PYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMK 413
Query: 422 SEQE 425
S +
Sbjct: 414 SLGK 417
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-120
Identities = 55/396 (13%), Positives = 131/396 (33%), Gaps = 25/396 (6%)
Query: 41 TEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEE 100
+ A+ N +G + G+ + + E ++ +
Sbjct: 38 ILSQSAEAKSTTYNATIGMATNKDGKMF-ASSLDAMFNDLTPDEIFPYAPPQGIEELRDL 96
Query: 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW 160
+ + + ++ + S + + T L + + I P+ W N+ ++
Sbjct: 97 WQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVF 154
Query: 161 RDAQ-IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWRE 219
+TY +D D +L++ +++ ++ +NPTG PT ++
Sbjct: 155 NTRNGANLQTYPIFDKDGH-YTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTT 213
Query: 220 IS-----YQFKVKGHFPFFDMAYQGFASGDLDKD--AQAIRIFLEDEHLIGCAQSYAKSM 272
I K D AY G D+ A+ + L K
Sbjct: 214 IVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF 273
Query: 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP-NLKSLW 331
+G RVG ++ D + ++++ + R+ S P+ V +L +
Sbjct: 274 FAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEI 333
Query: 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAK---- 387
++ + +R + + + + W+ G F + + L K
Sbjct: 334 EQNIQTLKERYEVTKEVVYADQYHSH----WQAYDFNSGYFMAIKVHDVDPEALRKHLID 389
Query: 388 EFHIYM----TQDGRISMAGVTTGNVNYLANAIHEV 419
++ I + D RI+ + V ++ ++ ++I +
Sbjct: 390 KYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKA 425
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 39/317 (12%), Positives = 85/317 (26%), Gaps = 77/317 (24%)
Query: 155 NHHNIWRDAQIPERTYHYYD------PD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207
+HH+ D + E Y Y D + D + D K+ L +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHI 54
Query: 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQS 267
+ + K + Q F L + + FL Q
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQ-----EEMVQKFVEEVLRINYK----FLMSPIKTEQRQP 105
Query: 268 YAKSMGLYGHRVGCLSILCVD----SKQAAAIRSQIQQIARAMYGSPP-----VHGIL-- 316
+ +Y + L D +K + ++ +A+ P + G+L
Sbjct: 106 -SMMTRMY---IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 317 ----LVATILSDPNLKSL------WI-----DEVKIMADRIQRKRTTLRQNLEKLGSS-- 359
+ + ++ W+ + + + + +Q+ + N
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 360 ---LNWEHITNQLGMFCFSGLTPYQ-----VD-----RLAKEFHIYMTQDGRISMAGVTT 406
L I +L S PY+ + + F + + +TT
Sbjct: 222 NIKLRIHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAF------NLSCKIL-LTT 272
Query: 407 GNVNYLANAIHEVTRSE 423
+ + + T +
Sbjct: 273 RFKQ-VTDFLSAATTTH 288
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 435 | |||
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.98 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.97 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.96 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.96 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.96 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.96 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.96 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.96 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.96 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.95 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.95 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.95 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.95 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.95 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.95 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.95 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.95 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.95 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.95 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.95 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.94 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.94 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.94 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.94 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.94 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.94 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.94 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.94 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.94 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.94 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.94 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.94 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.94 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.94 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.94 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.94 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.94 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.93 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.93 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.93 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.93 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.93 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.93 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.93 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.93 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.93 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.93 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.93 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.93 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.93 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.93 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.92 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.92 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.92 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.92 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.92 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.92 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.92 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.92 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.92 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.92 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.91 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.91 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.91 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.91 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.91 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.91 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.9 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.9 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.9 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.89 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.89 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.89 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.88 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.88 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.88 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.87 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.87 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.87 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.87 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.87 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.87 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.78 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.86 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.86 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.86 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.86 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.85 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.85 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.84 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.84 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.82 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.82 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.82 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.81 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.81 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.79 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.73 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.7 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.7 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.69 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.68 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.59 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.58 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.54 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.51 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.43 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.43 |
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=473.34 Aligned_cols=399 Identities=40% Similarity=0.651 Sum_probs=346.8
Q ss_pred cccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHH
Q 013839 21 RTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVE 99 (435)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~ 99 (435)
.+-+.|++++..|+++++.+.++++++.++ +|||++|.|.|++|.+++.+.|+++...+. .+..++|.|..|+++||+
T Consensus 16 ~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ 94 (420)
T 4h51_A 16 TTAERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFID 94 (420)
T ss_dssp CHHHHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHH
T ss_pred hhhHHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHH
Confidence 345689999999999999999999887666 999999999999999999999998887765 455678999999999999
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCChhhHHHHhhCCCCee-eeeecCCC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RFHPESHIYFPDPTWSNHHNIWRDAQIPER-TYHYYDPD 176 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~v~~~~~~ 176 (435)
++++++++.+.. .+++..+.|.||++|+..++.++. +++|||+|++++|+|++|..+++..|++.+ .++..+++
T Consensus 95 aia~~~~g~~~~---~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~ 171 (420)
T 4h51_A 95 EAVKIIYGNTVE---LENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPK 171 (420)
T ss_dssp HHHHHHHC---C---GGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGG
T ss_pred HHHHHhcCCCcc---ccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccc
Confidence 999999876543 456666689999999988764443 346999999999999999999999999754 55555566
Q ss_pred CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh
Q 013839 177 SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256 (435)
Q Consensus 177 ~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 256 (435)
++++|.+.+.+.+...+++++++++++||||||.+++.++|++|+++|+++++++|+|++|++|.+++.+.+...++.+.
T Consensus 172 ~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~ 251 (420)
T 4h51_A 172 TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFA 251 (420)
T ss_dssp GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHH
Confidence 78899999999988777788999999999999999999999999999999999999999999999986544555666667
Q ss_pred hcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+..++++++.||||.|+++|||+||+++.+...+...++...+....+..+++++..+|.++..++.++.+..+|+++++
T Consensus 252 ~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~ 331 (420)
T 4h51_A 252 RRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELS 331 (420)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred hhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77889999999999999999999999876655665666777788788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHH
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l 416 (435)
.++++++++|+.+.+.|+++|.+..|.++.+++|||.|++++.++++.| +++||++.|+||||+++++++++++++++|
T Consensus 332 ~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L-~e~~Vy~~~~gRis~Agl~~~ni~~~a~aI 410 (420)
T 4h51_A 332 AMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCEYC-QNHNIFITVSGRANMAGLTHETALMLAQTI 410 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHHHH-HHTTEECCTTCEEEGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHHHH-HhCCEEEcCCCEEEeccCCHHHHHHHHHHH
Confidence 9999999999999999999998888988999999999999999988755 789999999999999988999999999999
Q ss_pred HHHHHhhh
Q 013839 417 HEVTRSEQ 424 (435)
Q Consensus 417 ~~~l~~~~ 424 (435)
.+++++..
T Consensus 411 ~~vvr~i~ 418 (420)
T 4h51_A 411 NDAVRNVN 418 (420)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 99997754
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-60 Score=465.25 Aligned_cols=394 Identities=26% Similarity=0.461 Sum_probs=333.7
Q ss_pred cccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh--cCCCCCCCCCCcccHHHHHH
Q 013839 23 VGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI--AGSEFLESISASVSTKMVEE 100 (435)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ 100 (435)
.|+|++++..++++++.+.++++++..+++|||++|.|+++++.+++++.++++.. + ..+...+|.+..|.++||++
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~a 80 (405)
T 3k7y_A 2 DKLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTL 80 (405)
T ss_dssp CCGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHH
T ss_pred cchhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHH
Confidence 46899999999999999999998877789999999997677766677778887766 5 23346789999999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC--CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH--PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK 178 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 178 (435)
+++++.+.+...+.++++..++|.|+++|+.++ +..++. | |+|++++|+|++|...++..|++++.+|+.+++++
T Consensus 81 ia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~--~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 157 (405)
T 3k7y_A 81 TQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVL--LEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLI 157 (405)
T ss_dssp HHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHH--HHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTT
T ss_pred HHHHHcCCCCccccccceEEEEcCchHHHHHHH--HHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccC
Confidence 999998777665666765333899999999998 444444 8 99999999999999999999999999998555578
Q ss_pred CcChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 179 SLDFAALMDDIKNAPDSSFFLLHPS-AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++|++.|++++.+. ++++++++++ ||||||.+++.+++++|+++|++|+++||+||+|.++.+++.+.+..++..+.+
T Consensus 158 ~~d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~ 236 (405)
T 3k7y_A 158 DINYDLFLNDLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE 236 (405)
T ss_dssp EECHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT
T ss_pred CcCHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh
Confidence 99999999999754 2455666654 599999999999999999999999999999999999998643334456666655
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
..+++|+++||||+|+++|||+||+++++++++..+.+.+.+.+..+..+.+++.++|.++..+|.++.+.+.|.++++.
T Consensus 237 ~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~ 316 (405)
T 3k7y_A 237 KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQ 316 (405)
T ss_dssp TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56899999999999999999999997545577755556666666666677788899999999999988777888899999
Q ss_pred HHHHHHHHHHHHHHHHH----hhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHH
Q 013839 338 MADRIQRKRTTLRQNLE----KLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLA 413 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~ 413 (435)
++++++++|+.+.+.|+ ++|.+..|.+.++++|||+|++++.+++.++ +++||.+.|+||||+++.+++++++++
T Consensus 317 ~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~ 395 (405)
T 3k7y_A 317 LSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIA 395 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHHHHHHH
Confidence 99999999999999999 8886666888999999999999977777777 889999999999999887899999999
Q ss_pred HHHHHHHHh
Q 013839 414 NAIHEVTRS 422 (435)
Q Consensus 414 ~~l~~~l~~ 422 (435)
++|+++++.
T Consensus 396 ~~i~~~~~~ 404 (405)
T 3k7y_A 396 DKICLSLSQ 404 (405)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998864
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-55 Score=433.65 Aligned_cols=405 Identities=39% Similarity=0.679 Sum_probs=347.3
Q ss_pred ccccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CCCCCCCCCCcccHH
Q 013839 20 SRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GSEFLESISASVSTK 96 (435)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~~~g~~~ 96 (435)
..++++|++++..++++++.+.++++.+.++++|+|++|.|.|+++++++.+.+++++..+. .....+|.+..|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~ 98 (448)
T 3meb_A 19 PGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPL 98 (448)
T ss_dssp ---CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHH
T ss_pred cchhhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHH
Confidence 34678999999999999999999998877788999999999888888888888888866664 233677999999999
Q ss_pred HHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeeeee
Q 013839 97 MVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTYHY 172 (435)
Q Consensus 97 lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~ 172 (435)
+|+++++++++.+..++++++|..+.|+||++|+.+++.+++++.+||+|++++|+|.++...++ ..|++++.+++
T Consensus 99 lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~ 178 (448)
T 3meb_A 99 FLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178 (448)
T ss_dssp HHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred HHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence 99999999977765555678998222999999999866577788999999999999999999999 99999999998
Q ss_pred cCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 173 YDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 173 ~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
.+++ ++++|++++++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+.++
T Consensus 179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~ 258 (448)
T 3meb_A 179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFA 258 (448)
T ss_dssp BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchh
Confidence 5555 689999999999986545688999999999999999999999999999999999999999999998753334456
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEe--------cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC--------VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
+..+.+..++++++.|+||.||++|+|+||+.+++ ++++..+.+++.+....+..+.+++.++|.++..+|.
T Consensus 259 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~ 338 (448)
T 3meb_A 259 VRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVH 338 (448)
T ss_dssp HHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHT
T ss_pred HHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhc
Confidence 66666667899999999999999999999984334 4564444588888887778888999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----CccccccCcceeEecCCCHHHHHHHhhhccEEEeCC-C
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL-----NWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD-G 397 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg-g 397 (435)
+..+.+.|.+++++.+++++++++.+.+.|++++.+. .+.+..+++|+|.|++++.+++..+++++||.+.|| |
T Consensus 339 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~v~~G~g 418 (448)
T 3meb_A 339 DKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGG 418 (448)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEEECSGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEEEeCCCc
Confidence 9888888888899999999999999999999986554 377788999999999999988988888899999995 6
Q ss_pred cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
|||++..+++++++++++|+++++++.
T Consensus 419 Ris~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 419 RMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 999987788899999999999987543
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-54 Score=422.48 Aligned_cols=397 Identities=37% Similarity=0.639 Sum_probs=334.2
Q ss_pred cccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHH
Q 013839 21 RTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVE 99 (435)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~ 99 (435)
.+++++++++..++++++.+...+.++..+++|||+.|.|.++++.+++.+.+.+++... ..+...+|++..|.+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 20 GSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp --CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHH
T ss_pred cccCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Confidence 466789999999999999999988877778999999997655555555555555555444 3434678999999999999
Q ss_pred HHHHhHcCCCCccccCC--CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCC
Q 013839 100 ESVKLVYGKDSDVVKEG--RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDS 177 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~--~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 177 (435)
++++++.+.....++++ +++ +|+||++|+.+++.+++++.+||+|++++|+|.++...++..|++++.++..++++
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~--~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 177 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTA--QALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKT 177 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEE--EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTT
T ss_pred HHHHHhcCCCccccccCceEEE--ECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecccc
Confidence 99999977665444577 777 99999999999866667789999999999999999999999999999999855567
Q ss_pred CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 178 KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 178 ~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
+++|++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+.+
T Consensus 178 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~ 256 (420)
T 4f4e_A 178 NGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAA 256 (420)
T ss_dssp TEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHh
Confidence 8999999999998665678999999999999999999999999999999999999999999999863 234566666666
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
..+++++++|+||.+|++|+|+||+++++++++..+.+...++...+..+.+++.++|.++..++.+..+.+.|.+++++
T Consensus 257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67899999999999999999999997445466644455556666555677788999999999999988877778889999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHH
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~ 417 (435)
.+++++++++.+.+.|++++.+.++.+..+++|+|+|++++.+.+..+++++||.+.|++|||++..+++++++++++|+
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIA 416 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999885333477888899999999999888888888899999999999998778899999999999
Q ss_pred HHH
Q 013839 418 EVT 420 (435)
Q Consensus 418 ~~l 420 (435)
+++
T Consensus 417 ~~l 419 (420)
T 4f4e_A 417 AVL 419 (420)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-54 Score=419.47 Aligned_cols=397 Identities=51% Similarity=0.888 Sum_probs=335.9
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia 102 (435)
|+|++++..+++.++...+.++.+.++++|+|+.|.|+|..+++.+.+.+++++..+. .....+|.+..|.+++|++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia 81 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHH
Confidence 6788999999999999999998877788999999998777766666667777666654 223677999999999999999
Q ss_pred HhHcCCCCccccCCCeeeEecCCchhHHHHHHH-HHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 103 KLVYGKDSDVVKEGRSAGVQALSGTGACRLFAE-FQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 103 ~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~-~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
+++.+..+..+++++|..+.|+||++|+.++.. +..++.+||+|++++|+|.++...++..|++++.+++.+++++++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 161 (401)
T 7aat_A 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 161 (401)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccC
Confidence 999776666667889873349999999998852 2334589999999999999999999999999999998555578999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++.+++.+++..++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+.+..++..+.+..++
T Consensus 162 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T 7aat_A 162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence 99998888765467899999999999999999999999999999999999999999999986422133455555566789
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+++++|+||.||++|+|+||+++...+++..+.+...+....+..+.+++...|.+++.++.++.+.+.|.+++++.+++
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975344666555567777777677778888999999998999888877788899999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l 420 (435)
++++++.+.+.|++++.+..+.+..+++|+|.|++++.+++..+++++||.+.|++|||++..+++++++++++|++++
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHHHHHHHHHh
Confidence 9999999999999987555577788999999999999888888888899999999999998778888999999998875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-54 Score=420.34 Aligned_cols=399 Identities=40% Similarity=0.698 Sum_probs=320.1
Q ss_pred ccccccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHH
Q 013839 18 TSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKM 97 (435)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~l 97 (435)
+++---+++++++..++++++.+.++++.+..+++|+|++|.|++.++++.+.+.++++ ......+|.+..|.++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~~~~~~~y~~~~g~~~l 84 (409)
T 4eu1_A 9 MGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----TLGTNMDYAPVTGIASF 84 (409)
T ss_dssp ------------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----CCCSCCCCCCTTCCHHH
T ss_pred ccchhhhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----CccccccCCCCCCcHHH
Confidence 45555579999999999999999999988788899999999986776555555554443 33336779999999999
Q ss_pred HHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHH-HHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC
Q 013839 98 VEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ-RRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD 176 (435)
Q Consensus 98 r~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 176 (435)
|+++++++.+.+..++++++|.+..+.||++|+.++..++ .++.+||+|++++|+|.++...++..|++++.+++.+++
T Consensus 85 r~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 164 (409)
T 4eu1_A 85 VEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPA 164 (409)
T ss_dssp HHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETT
T ss_pred HHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCc
Confidence 9999999977766555577886557999999998875333 356789999999999999999999999999999985566
Q ss_pred CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh
Q 013839 177 SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256 (435)
Q Consensus 177 ~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 256 (435)
++++|++++++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+.
T Consensus 165 ~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 244 (409)
T 4eu1_A 165 TKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLV 244 (409)
T ss_dssp TTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred CCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHH
Confidence 78999999999997644567888889999999999999999999999999999999999999999874211234555555
Q ss_pred hcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+..+++++++|+||.+|++|+|+||+++++++++..+.+++.++...+..+.+++.++|.++..+|.+..+.+.|.++++
T Consensus 245 ~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (409)
T 4eu1_A 245 DMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELK 324 (409)
T ss_dssp TTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66678999999999999999999997222447776666777777776677788899999999999998877777888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHH
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l 416 (435)
+.+++++++++.+.+.|+++|.+..+.+..+++|+|.|++++.+++..+++++||.+.|++||+++..+++++++++++|
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~~~~~l 404 (409)
T 4eu1_A 325 QMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAI 404 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHHHHHHH
Confidence 99999999999999999998765557778899999999999988888888889999999999999887889999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
++++
T Consensus 405 ~~~l 408 (409)
T 4eu1_A 405 HNVT 408 (409)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=399.44 Aligned_cols=392 Identities=36% Similarity=0.609 Sum_probs=325.7
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH--hcCCCCCCCCCCcccHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK--IAGSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~~~g~~~lr~~ia 102 (435)
++++++..+++.++.+.+.+.++..+++|+|+.|.|.+.++.+++.+.+.+++.+ +......+|++..|.+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 80 (397)
T 3fsl_A 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHH
T ss_pred CcccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHH
Confidence 4678888999999999999988777899999999765555545554555555554 44434667999999999999999
Q ss_pred HhHcCCCCccccCC--CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 103 KLVYGKDSDVVKEG--RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 103 ~~l~~~~~~~~~~~--~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
+++.+.....++++ +|+ +|+||++|+.++..+++++.+||+|+++.|+|.++...++..|++++.++..+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~i~--~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (397)
T 3fsl_A 81 PLLFGADHPVLKQQRVATI--QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV 158 (397)
T ss_dssp HHHHCTTCHHHHTTCEEEE--EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEE
T ss_pred HHHhcCCcccccccceEEE--EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcC
Confidence 99976655334577 777 99999999999865667789999999999999999999999999999998854567899
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
|++++++.+.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. +....++..+.+..+
T Consensus 159 d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~ 237 (397)
T 3fsl_A 159 RFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGL 237 (397)
T ss_dssp CHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTC
T ss_pred cHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCC
Confidence 9999999998655678999999999999999999999999999999999999999999999862 124456666666678
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++++++|+||.+|++|+|+||+++.+.+++..+.+...++...+..+.+++.++|.++..++.+..+.+.|.+++++.++
T Consensus 238 ~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 317 (397)
T 3fsl_A 238 PALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRT 317 (397)
T ss_dssp CEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997434456644445555555445567778899999999999988777777788999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
+++++++.+.+.|++++.+.++.+..+++|+|+|++++.+.+..+++++||.+.||+||+++..+++++++++++|+++
T Consensus 318 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHHHHHHHhh
Confidence 9999999999999988532236677889999999999988888888889999999999999877889999999999875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=386.60 Aligned_cols=398 Identities=43% Similarity=0.727 Sum_probs=323.1
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVEES 101 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~i 101 (435)
+++++++..+++.++.+.+...+..++++|+|+.|.|++.++++.+++.+.+++.+.. .+....|.+..|.+++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 4788888888888988888887666788999999997665555556666776666654 33456798889999999999
Q ss_pred HHhHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCC-----CEEEEcCCCChhhHHHHhhCCCC-eeeeeec
Q 013839 102 VKLVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPE-----SHIYFPDPTWSNHHNIWRDAQIP-ERTYHYY 173 (435)
Q Consensus 102 a~~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~ 173 (435)
++++.+..+..+.+++|. + |+||++|+.++..+...+.+| |+|+++.|+|.++...++..|++ ++.++..
T Consensus 84 a~~~~~~~~~~~~~~~v~--~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 161 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVG--GVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161 (412)
T ss_dssp HHHHHCTTCHHHHTTCEE--EEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred HHHHhcCCCCccCCCcEE--EEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeee
Confidence 999966544444578988 7 999999999986555667899 99999999999999999999999 9999874
Q ss_pred CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 174 DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+++++++|++++++++.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+....++.
T Consensus 162 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 241 (412)
T 1ajs_A 162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred cCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHH
Confidence 34668899999999997544467888899999999999999999999999999999999999999998753101233454
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
.+....++++++.|+||.+|++|+|+||+++.+.+++..+.+++.+....+..+.+++.++|.++..+|.+..+.+.|.+
T Consensus 242 ~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence 44445678999999999999889999999621125654455666666655555666789999999999987654555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHH
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLA 413 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~ 413 (435)
++++.+++++++++.+.+.|++++.+..+.+..+++|+|+|++++.+++..+++++||.+.|++||+++..+++++++++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~~~i~~~~ 401 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVA 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCHHHHHHHH
Confidence 88899999999999999999988633346677788999999999877888888889999999999999855899999999
Q ss_pred HHHHHHHHhh
Q 013839 414 NAIHEVTRSE 423 (435)
Q Consensus 414 ~~l~~~l~~~ 423 (435)
++|+++++++
T Consensus 402 ~~l~~~l~~~ 411 (412)
T 1ajs_A 402 TSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999988653
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=383.98 Aligned_cols=398 Identities=40% Similarity=0.726 Sum_probs=321.0
Q ss_pred cccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH-hc-CCCCCCCCCCcccHHHHHH
Q 013839 23 VGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IA-GSEFLESISASVSTKMVEE 100 (435)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~Y~~~~g~~~lr~~ 100 (435)
+|++++++..++++++.+.+.+.+.+++++|+|+.|.|++.++.+.+++.+.+++.. .. .+...+|.+..|.+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN 81 (412)
T ss_dssp TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred cchhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence 357888888888888888888876666889999999987777666666767766665 44 2335679888999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK 178 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 178 (435)
+++++.+..+.++.+++|. + |+||++|+.++..+...+.+||+|++++|+|.++...++..|++++.++..+++++
T Consensus 82 ia~~~~~~~~~~~~~~~i~--~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~ 159 (412)
T 1yaa_A 82 AAKIIFGTQSDALQEDRVI--SVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK 159 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEE--EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTT
T ss_pred HHHHHhcCCCCCCCcceEE--EEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCC
Confidence 9999966554445578988 7 99999999988655666789999999999999999999999999999987434468
Q ss_pred CcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc
Q 013839 179 SLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED 258 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 258 (435)
++|++++++.+.+.++.+.++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++......++..+...
T Consensus 160 ~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 1yaa_A 160 SLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239 (412)
T ss_dssp EECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc
Confidence 89999999999754334667777999999999999999999999999999999999999999875310112344343333
Q ss_pred CC---eEEEEecccccccccCCcccEEEEEe----cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 259 EH---LIGCAQSYAKSMGLYGHRVGCLSILC----VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 259 ~~---~~i~~~s~SK~~g~~G~RvG~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.+ ++++++|+||.+|++|+|+||+++++ .+++..+.+++.+....+..+.+++.++|.++..+|.+..+.+.|
T Consensus 240 ~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 319 (412)
T 1yaa_A 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319 (412)
T ss_dssp TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence 44 89999999999998899999995213 144434456777776555666777899999999999887666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHH
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNY 411 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~ 411 (435)
.+++++.+++++++++.+.+.|++++.+..+.+..+++|+|+|++++.+.+..+++++||.+.+..||+++..+++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~ 399 (412)
T 1yaa_A 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccCCHhHHHH
Confidence 77899999999999999999999886322356778899999999998877888887899999997899997658999999
Q ss_pred HHHHHHHHHHh
Q 013839 412 LANAIHEVTRS 422 (435)
Q Consensus 412 ~~~~l~~~l~~ 422 (435)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=378.79 Aligned_cols=392 Identities=37% Similarity=0.657 Sum_probs=298.4
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+|++++..+++.++.....+....+++.|||+.|.|.+.++...+++.+.+++.+. ......+|.+..|.+++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (396)
T 2q7w_A 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHH
Confidence 36677888888887777777655557899999999755544344555555555544 22235679888999999999999
Q ss_pred hHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 104 LVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++.+.+..++++++|. + |+||++|+.++..++..+.+||+|+++.|+|.++...++..|++++.++..+++++++|
T Consensus 81 ~~~~~~~~~~~~~~v~--~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 158 (396)
T 2q7w_A 81 LLFGKGSALINDKRAR--TAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLD 158 (396)
T ss_dssp HHHCTTCHHHHTTCEE--EEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHhcCCCCccccccEE--EEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcC
Confidence 9966544334578888 6 99999999998544545679999999999999999999999999999987433568999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++++.+.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ .....++..+....++
T Consensus 159 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~ 237 (396)
T 2q7w_A 159 FDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKE 237 (396)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc-cchhHHHHHHHhcCCc
Confidence 999999997543357889999999999999999999999999999999999999999998752 0122345444444578
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+++++|+||.+|++|+|+||+++.+++++..+.+++.+....+..+.+++.++|.++..+|++..+.+.|.+++++.+++
T Consensus 238 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~ 317 (396)
T 2q7w_A 238 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQR 317 (396)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CH
T ss_pred EEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999962123454444477777665555666779999999999998875566677888999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
++++++.+.+.|++++.+..+.+..+++|+|+|++++.+.+..+++++||.+.|+.||+++..+++++++++++|+++
T Consensus 318 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 318 IQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHHHHhc
Confidence 999999999999988632235667789999999999887788888889999999889999755899999999999875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=371.20 Aligned_cols=389 Identities=33% Similarity=0.590 Sum_probs=308.9
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+|++++..+++.++.+.+.+....+++.|||+.|.|.+.++...+.+.+.+++.+.. .+....|++..|.+++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (394)
T 2ay1_A 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHH
Confidence 367788888888988888887666678999999997555443455566666655543 2235679998999999999999
Q ss_pred hHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 104 LVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++.+... ++++|. + |+||++|+.++..++..+.+||+|+++.|+|.++...++..|++++.++..+++++++|
T Consensus 81 ~~~~~~~---~~~~v~--~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 155 (394)
T 2ay1_A 81 LILGDGL---KSETTA--TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVD 155 (394)
T ss_dssp HHHGGGC---CGGGEE--EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEEC
T ss_pred HHhCCCC---CcccEE--EEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccC
Confidence 9854321 367888 7 99999999998544433569999999999999999999999999999987433568899
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++++.+.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....++..+....++
T Consensus 156 ~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (394)
T 2ay1_A 156 FEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPE 234 (394)
T ss_dssp HHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCC
Confidence 9999999985433578888999999999999999999999999999999999999999887520 012344444444568
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+++++|+||.+|++|+|+||+++.+++++..+.+.+.+....+..+.+++.++|.++..+|.+..+.+.|.++.++.+++
T Consensus 235 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~ 314 (394)
T 2ay1_A 235 VLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSG 314 (394)
T ss_dssp EEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999963123565444455656554455566678999999999998875666667888999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
++++++.+.+.|++++.+..+.+..+++|+|+|++++.+.+..+++++||.+.|+.||+++..+++++++++++|+++
T Consensus 315 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 315 MLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHHHHHc
Confidence 999999999999988632235666788899999999877787788889999999889999766899999999999875
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=370.10 Aligned_cols=380 Identities=19% Similarity=0.272 Sum_probs=298.6
Q ss_pred cCCCCCCchhhHHHHHhcCC----CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHh
Q 013839 29 VAPAAKDPINGVTEAFLADP----SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
....+++.++.+.+++++.. +.++|+|+.|.|.+.++...+++.+.+++.++.......|.+..|.+++|++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 92 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKE 92 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHH
Confidence 33455667777776665422 45899999999877666677777778777765532246799999999999999999
Q ss_pred HcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHh
Q 013839 105 VYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 105 l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 184 (435)
+.+..... .+++++ +|+||++|+.++ +.+++.+||+|++++|+|.++...++..|++++.+++. ++++++|++.
T Consensus 93 ~~~~~~~~-~~~~i~--~t~g~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~ 166 (418)
T 3rq1_A 93 CFGNFRPE-GHIRSI--ATAGGTGGIHHL--IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLF-DEHNNFNHEA 166 (418)
T ss_dssp HHGGGCCS-SEEEEE--EESHHHHHHHHH--HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSB-CTTSSBCHHH
T ss_pred HhcccCcc-ccccEE--ECCchHHHHHHH--HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeee-CCCCCcCHHH
Confidence 85543221 123777 899999999998 77778999999999999999999999999999999984 3458999999
Q ss_pred HHHHhhcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCceeeeeccCCCccCCCCcccHHHH-HH
Q 013839 185 LMDDIKNA--PDSSFFLLHPSA-HNPTGVDPTEEQWREISYQFK------VKGHFPFFDMAYQGFASGDLDKDAQAI-RI 254 (435)
Q Consensus 185 l~~~i~~~--~~~~~~v~~~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~vi~Deay~~~~~~~~~~~~~~~-~~ 254 (435)
|++++++. ++.++++++++| |||||.+++.+++++|+++|+ +|++++|+||+|.++.+++ ....++ ..
T Consensus 167 l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~--~~~~~~~~~ 244 (418)
T 3rq1_A 167 FQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK--DEVRAFFNK 244 (418)
T ss_dssp HHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH--HHHHGGGGG
T ss_pred HHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh--HHHHHHHHH
Confidence 99998731 022348889999 999999999999999999999 8999999999999988653 111122 11
Q ss_pred hhhcCCe--EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh----ccccCCChhHHHHHHHHhCChhhH
Q 013839 255 FLEDEHL--IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR----AMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 255 ~~~~~~~--~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
..+..++ +++++|+||.+|++|+|+||+++.+.+++ +++.+.+... ..+.+++.++|.++..++.+..+.
T Consensus 245 ~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 320 (418)
T 3rq1_A 245 FSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEE----IADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKF 320 (418)
T ss_dssp GTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHH----HHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHH
T ss_pred HHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHH----HHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHH
Confidence 2223344 58999999999999999999974334677 6666655432 234678999999999999987766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHHhhhccEEEeCCC---cEEeccC
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG---RISMAGV 404 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---Ris~~~~ 404 (435)
+.|.++.++++++++++++.+.+.|+++| +.+..+++|+|+|+.+ +.+.+.+.|+++||.+.||+ ||+++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~iRis~~~~ 396 (418)
T 3rq1_A 321 KEYEAERNCYYQLIRDRADIFKQEAAQVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGI 396 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSSEEEEEGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCCCeEEEEecC
Confidence 67777888889999999999999999886 4577889999999876 45555456678999999986 9998756
Q ss_pred CCCcHHHHHHHHHHHHHhhh
Q 013839 405 TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++++++|+++++++.
T Consensus 397 ~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 397 PKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp CHHHHTTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999987654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=363.56 Aligned_cols=360 Identities=15% Similarity=0.138 Sum_probs=279.4
Q ss_pred cCCCCCCchhhHHHHHhc--CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc
Q 013839 29 VAPAAKDPINGVTEAFLA--DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
+...+++.+..+.+...+ ..+++.|+|+.|+| +. +.++.+.+.+...+..+ ...|++..|.+++|+++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~ 82 (385)
T 1b5p_A 8 VQAMKPSATVAVNAKALELRRQGVDLVALTAGEP-DF---DTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFR 82 (385)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred HhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHH
Confidence 333444445444443322 13568999999996 33 33334444434444333 4569888899999999999995
Q ss_pred CCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHH
Q 013839 107 GKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 107 ~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
...+..+++++|+ +|+||++|+.++ +.+++.+||+|++++|+|..+...++..|++++.+++.+++++.+|+++++
T Consensus 83 ~~~g~~~~~~~i~--~t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 158 (385)
T 1b5p_A 83 RENGLSVTPEETI--VTVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVR 158 (385)
T ss_dssp HTTCCCCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHH
T ss_pred HHhCCCCChHHEE--EcCChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHH
Confidence 4433334577888 999999999998 677789999999999999999999999999999999843356789999999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
+++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++ . ..++..+.+ +++++++
T Consensus 159 ~~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~~~--~~~i~~~ 230 (385)
T 1b5p_A 159 RAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRVAP--EHTLTVN 230 (385)
T ss_dssp TTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGTCT--TTEEEEE
T ss_pred HhcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHcCC--CCEEEEE
Confidence 9887 568999999999999999999999999999999999999999999988753 1 112333322 7899999
Q ss_pred cccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
||||.+|++|+|+||+++ +++ +++.+.+.....+.+++.+.|.++..+|...... .+++++.++++++++
T Consensus 231 s~SK~~~~~G~RiG~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~ 300 (385)
T 1b5p_A 231 GAAKAFAMTGWRIGYACG---PKE----VIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAYRRRR 300 (385)
T ss_dssp ESTTTTTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHH
T ss_pred echhhcCCcccceEEEEe---CHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHH
Confidence 999999999999999974 777 8887877666666788999999998888651000 156788899999999
Q ss_pred HHHHHHHHhhCCCCCccccccCcceeEecCC-----CHHH-HHHHhhhccEEEeCC------C--cEEeccCCCCcHHHH
Q 013839 347 TTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQ-VDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYL 412 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~-~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~ 412 (435)
+.+.+.|+++| +.+..+++++|+|+.+ +.+. .+.++ ++||.+.|| + |||++. ++++++++
T Consensus 301 ~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~-~~~~i~~~ 374 (385)
T 1b5p_A 301 DLLLEGLTALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYAT-SEENLRKA 374 (385)
T ss_dssp HHHHHHHHHHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHHHHCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecC-CHHHHHHH
Confidence 99999999885 4577788999999754 4444 45554 789999987 2 999984 88889999
Q ss_pred HHHHHHHHH
Q 013839 413 ANAIHEVTR 421 (435)
Q Consensus 413 ~~~l~~~l~ 421 (435)
+++|+++++
T Consensus 375 l~~l~~~l~ 383 (385)
T 1b5p_A 375 LERFARVLG 383 (385)
T ss_dssp HHHGGGGC-
T ss_pred HHHHHHHHh
Confidence 998877653
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=365.80 Aligned_cols=372 Identities=15% Similarity=0.116 Sum_probs=283.1
Q ss_pred cccccCCCCCCchhhHHHHHhcCCC--CCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPS--PYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEES 101 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~i 101 (435)
.++.++..++++++.+.+.++.+++ +++|+|+.|.| +..+...+++.+.+++... ......+|.+..|.+++|+++
T Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~l 105 (427)
T 3dyd_A 27 RPSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEI 105 (427)
T ss_dssp CCCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHH
T ss_pred chhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHH
Confidence 3567777777888888888766443 56799999997 4333344445555554443 333356799999999999999
Q ss_pred HHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 102 VKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 102 a~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++++.+. ..++.+++++ +|+||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++++++|
T Consensus 106 a~~~~~~-~~~~~~~~v~--~t~g~t~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 180 (427)
T 3dyd_A 106 ASYYHCP-EAPLEAKDVI--LTSGCSQAIDLC--LAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEID 180 (427)
T ss_dssp HHHHCBT-TBCCCGGGEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred HHHHhhc-CCCCChHHEE--EecCcHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 9999654 4445578888 999999999998 6666789999999999999999999999999999998655678999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++++.+. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +...+
T Consensus 181 ~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~-~~~~~ 254 (427)
T 3dyd_A 181 LKQLEYLID---EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATL-STDVP 254 (427)
T ss_dssp HHHHHSSCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGG-CSSCC
T ss_pred HHHHHHHhc---cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHh-CCCCc
Confidence 999999987 5688999999999999999999999999999999999999999999987642 22233333 33456
Q ss_pred EEEEecccccccccCCcccEEEEEecC------hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVD------SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+++++|+||.|+++|+|+||+++ .+ ++ +++.+...... ..+++.++|.++..+|.... .+++
T Consensus 255 vi~~~S~sK~~~~~G~riG~~~~--~~~~~~~~~~----i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~-----~~~~ 322 (427)
T 3dyd_A 255 ILSCGGLAKRWLVPGWRLGWILI--HDRRDIFGNE----IRDGLVKLSQR-ILGPCTIVQGALKSILCRTP-----GEFY 322 (427)
T ss_dssp EEEEEESTTTSSCGGGCCEEEEE--ECSTTSSHHH----HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC-----HHHH
T ss_pred EEEEeeccccCCCcCcceEEEEe--cCcchhhHHH----HHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC-----HHHH
Confidence 89999999999999999999974 23 34 77777665443 46789999999999987422 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG-------- 397 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg-------- 397 (435)
++.+++++++++.+.+.|++++ ++.+..+++|+|+|++++ .+++..+++++||.+.||+
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~---g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~i 399 (427)
T 3dyd_A 323 HNTLSFLKSNADLCYGALAAIP---GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFI 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST---TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeE
Confidence 7888999999999999999873 266778899999997542 3556777778999999872
Q ss_pred cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||+++. +++++++++++|++++++..
T Consensus 400 Ris~~~-~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 400 RVVITV-PEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp EEESCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECC-CHHHHHHHHHHHHHHHHHhh
Confidence 999974 89999999999999987654
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=353.41 Aligned_cols=345 Identities=16% Similarity=0.157 Sum_probs=276.1
Q ss_pred ccchHHHHHHHHhcC--C-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh-CCC
Q 013839 68 VVLQCVREAEAKIAG--S-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF-HPE 143 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~--~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g 143 (435)
.|.+.++++...+.. + ....|+++.|.+++|+++++++...++.++++++|+ +|+|+++++.++ +..++ .+|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~--~~~l~~~~g 182 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIF--LTDGASPGVHLM--MQLLIRNEK 182 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEE--EESSSHHHHHHH--HHHHCCSTT
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEE--EcCCHHHHHHHH--HHHHcCCCC
Confidence 455577777666653 2 467899999999999999999853333334478888 999999999988 66666 799
Q ss_pred CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 013839 144 SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREI 220 (435)
Q Consensus 144 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i 220 (435)
|+|++++|+|..+...++..|++++.+++.++++|++|+++|++++++. ..+++++++++||||||.+++.+++++|
T Consensus 183 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i 262 (500)
T 3tcm_A 183 DGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDI 262 (500)
T ss_dssp EEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHH
Confidence 9999999999999999999999999999865557899999999999742 1267899999999999999999999999
Q ss_pred HHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh---h---hcCCeEEEEecccccc-cccCCcccEEEEEecChhHHH
Q 013839 221 SYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF---L---EDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAA 293 (435)
Q Consensus 221 ~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~---~---~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~ 293 (435)
+++|++|++++|+||+|..+.+++. ....++..+ . ....++++++|+||.| |++|+|+||+++...+++
T Consensus 263 ~~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~--- 338 (500)
T 3tcm_A 263 VKFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP--- 338 (500)
T ss_dssp HHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT---
T ss_pred HHHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHH---
Confidence 9999999999999999999888532 112222221 1 1224689999999999 899999999974333677
Q ss_pred HHHHHHHHHhhccccCCChhHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 294 AIRSQIQQIARAMYGSPPVHGILLVATILSDP----NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+++.+.+... ...+++.++|.++..++..+ ...+.|.++.+..+++++++++.+.+.|++++ ++.+.++++
T Consensus 339 -~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~g 413 (500)
T 3tcm_A 339 -VREQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE---GITCNEAEG 413 (500)
T ss_dssp -HHHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TEECCCCCB
T ss_pred -HHHHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcEEecCCe
Confidence 7777777553 46788999999999999742 34555677888999999999999999999873 377889999
Q ss_pred ceeEecCC--CH---------------HHHHHHhhhccEEEeCC-------C----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 370 GMFCFSGL--TP---------------YQVDRLAKEFHIYMTQD-------G----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 370 g~~~~~~~--~~---------------~~~~~ll~~~gI~i~pg-------g----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
|+|.|+++ .. .++.++++++||.+.|| | |++++ .+++++++++++|+++++
T Consensus 414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHH
T ss_pred EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH
Confidence 99999643 21 12467788899999976 2 99998 589999999999999998
Q ss_pred hhhhh
Q 013839 422 SEQET 426 (435)
Q Consensus 422 ~~~~~ 426 (435)
+..++
T Consensus 493 ~~~~~ 497 (500)
T 3tcm_A 493 AFMSE 497 (500)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=357.37 Aligned_cols=371 Identities=13% Similarity=0.059 Sum_probs=290.1
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE-FLESISASVSTKMVEESV 102 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia 102 (435)
.+.+++...+++.+........ ++++|+|+.|.| +. ++++.+.+.+...+..+. ...|++..|.+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 77 (422)
T 3fvs_A 5 LQARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP-DF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILA 77 (422)
T ss_dssp CSCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC-SS---CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHH
T ss_pred hHHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC-CC---CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHH
Confidence 3455666677666666655553 468999999996 33 344444444444444332 367999899999999999
Q ss_pred HhHcCCCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC-------
Q 013839 103 KLVYGKDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD------- 174 (435)
Q Consensus 103 ~~l~~~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~------- 174 (435)
+++....+.++++ ++|. +++||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.+++..
T Consensus 78 ~~~~~~~g~~~~~~~~i~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~ 153 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVL--VTVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE 153 (422)
T ss_dssp HHHHHHHTCCCCHHHHEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSS
T ss_pred HHHHHhhCCCCCCCCcEE--EECChHHHHHHH--HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccc
Confidence 9984322222335 5888 999999999988 666788999999999999999999999999999998842
Q ss_pred ---CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 175 ---PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 175 ---~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
++++.+|++++++++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...+
T Consensus 154 ~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~ 228 (422)
T 3fvs_A 154 LGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHIS 228 (422)
T ss_dssp CCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred cccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCC
Confidence 1346789999999887 6789999999999999999999999999999999999999999999887642 2223
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH-HH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK-SL 330 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~-~~ 330 (435)
+..+....++++++.|+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..++.+.... ..
T Consensus 229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (422)
T 3fvs_A 229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVLG---PDH----IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQ 301 (422)
T ss_dssp GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred hhhcccccCcEEEEecchhccCCccceEEEEEe---CHH----HHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccc
Confidence 434433347899999999999999999999964 778 7887877666667788899999998888631000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCH------------------HHHHHHhhhccEE
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTP------------------YQVDRLAKEFHIY 392 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~------------------~~~~~ll~~~gI~ 392 (435)
+.+++++.+++++++++.+.+.|+++| +.+..+++|+|+|+.+.. +++..+++++||.
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~ 377 (422)
T 3fvs_A 302 PSSYFVQFPQAMQRCRDHMIRSLQSVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLV 377 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEE
Confidence 125678889999999999999999886 566788999999986622 4567777888999
Q ss_pred EeCC-------------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 393 MTQD-------------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 393 i~pg-------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.|| + ||+++. +++++++++++|++++++
T Consensus 378 v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 378 AIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHC
T ss_pred EeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 9874 1 999987 999999999999998764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=356.63 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=271.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|.| +. +.++.+.+.+.+.+......+|++..|.+++|+++++++....+..+++++|. +|+||+
T Consensus 55 ~~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~--~t~G~~ 128 (447)
T 3b46_A 55 QGRELINLGQGFF-SY---SPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVT--VTTGAN 128 (447)
T ss_dssp TTSCCEECCCCSC-SS---CCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEE--EESHHH
T ss_pred cCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEE--EeCCHH
Confidence 4578999999996 44 33444444444444431246799999999999999999954433334467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC----------CCCcChHhHHHHhhcCCCCcE
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD----------SKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.+++.+++ ++++|+++|++++. ++++
T Consensus 129 ~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~ 203 (447)
T 3b46_A 129 EGILSC--LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTK 203 (447)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEE
T ss_pred HHHHHH--HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc---cCCe
Confidence 999998 67778899999999999999999999999999999884332 57899999999887 6789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+ .+..++++++.|+||.++++|
T Consensus 204 ~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 204 AVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 999999999999999999999999999999999999999999887641 1122222 223467999999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||++ +.+++ +++.+.........+++.+.|.++..+|.... ..+++++.+++++++++.+.+.|+++
T Consensus 281 ~riG~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 281 WRIGWVL--SLNAE----LLSYAAKAHTRICFASPSPLQEACANSINDAL----KIGYFEKMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp SCCEEEE--CSCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhEEEE--eCCHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCCc----chHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999995 33667 77777776555567789999999888886531 23567889999999999999999988
Q ss_pred CCCCCccccccCcceeEecCCC-------------------H-HHHHHHhhhccEEEeCC-------------C--cEEe
Q 013839 357 GSSLNWEHITNQLGMFCFSGLT-------------------P-YQVDRLAKEFHIYMTQD-------------G--RISM 401 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~~-------------------~-~~~~~ll~~~gI~i~pg-------------g--Ris~ 401 (435)
| +.+..+++|+|+|+.+. . +++..+++++||.+.|| + ||++
T Consensus 351 g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~ 426 (447)
T 3b46_A 351 G----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426 (447)
T ss_dssp T----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred C----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence 6 45667889999998542 2 34566766789999875 2 9999
Q ss_pred ccCCCCcHHHHHHHHHH
Q 013839 402 AGVTTGNVNYLANAIHE 418 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~ 418 (435)
+. +++++++++++|++
T Consensus 427 ~~-~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 427 CK-DDAYLENAVERLKL 442 (447)
T ss_dssp CS-CHHHHHHHHHHGGG
T ss_pred eC-CHHHHHHHHHHHHH
Confidence 76 88999999999876
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=352.42 Aligned_cols=361 Identities=13% Similarity=0.164 Sum_probs=272.0
Q ss_pred CeeeeecceecCCCCCc----------------------ccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhH
Q 013839 51 YKINLGVGAYRDDKGRP----------------------VVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
++|++.+|+|.. .+.. .|...++++.+.+.. .....|+++.|.+++|+++++++
T Consensus 64 ~~i~~nig~p~~-~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 142 (498)
T 3ihj_A 64 EVIRANIGDAQA-MGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYI 142 (498)
T ss_dssp SCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHH
T ss_pred hhhhcCCcCccc-ccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 899999999722 2211 244445555444442 13567999999999999999999
Q ss_pred cCCCC-ccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 106 YGKDS-DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 106 ~~~~~-~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
...++ .+.++++|+ +|+|+++++.++ +..++.+|| +|+++.|+|+.+...++..|++++.+++.++++|++
T Consensus 143 ~~~~gG~~~~~~~i~--~t~G~~~ai~~~--~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~ 218 (498)
T 3ihj_A 143 TRRDGGVPADPDNIY--LTTGASDGISTI--LKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWAL 218 (498)
T ss_dssp HHHTTTCCCCGGGEE--EESSHHHHHHHH--HHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBC
T ss_pred HHhcCCCCCCcccEE--EcCCHHHHHHHH--HHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCC
Confidence 53331 334478988 999999999988 666778875 999999999999999999999999999865557899
Q ss_pred ChHhHHHHhhcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-
Q 013839 181 DFAALMDDIKNAPD--SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE- 257 (435)
Q Consensus 181 d~e~l~~~i~~~~~--~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~- 257 (435)
|+++|++++++.+. +++++++++||||||.+++.+++++|+++|++|++++|+||+|..+.+++. ....++..+..
T Consensus 219 d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~-~~~~s~~~~~~~ 297 (498)
T 3ihj_A 219 NVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD-CRFHSFKKVLYE 297 (498)
T ss_dssp CHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHH
T ss_pred CHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC-CCcCCHHHHHHH
Confidence 99999999974311 578999999999999999999999999999999999999999999988642 11223332211
Q ss_pred ------cCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh----h
Q 013839 258 ------DEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP----N 326 (435)
Q Consensus 258 ------~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----~ 326 (435)
...++++++|+||.+ |++|+|+||+++.+.+++ +++.+.+... ...+++.++|.++..++..+ .
T Consensus 298 ~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~----l~~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~ 372 (498)
T 3ihj_A 298 MGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE----IKGQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEE 372 (498)
T ss_dssp TCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH----HHHHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTST
T ss_pred hcccccCceeEEEEeccccccccCcccceEEEEEecCCHH----HHHHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcc
Confidence 234589999999999 899999999973234788 7777777654 56788999999999998752 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC---------------CHHH--HHHHhhhc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---------------TPYQ--VDRLAKEF 389 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~--~~~ll~~~ 389 (435)
..+.|.++.+..+++++++++.+.+.|++++ ++.+.++++|+|+|+.+ +.+. +.++++++
T Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~ 449 (498)
T 3ihj_A 373 SFEQFSREKESVLGNLAKKAKLTEDLFNQVP---GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEET 449 (498)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHC
Confidence 3334556677888999999999999999873 27788999999999732 2332 57778889
Q ss_pred cEEEeCC-------C----cEEeccCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 390 HIYMTQD-------G----RISMAGVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 390 gI~i~pg-------g----Ris~~~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
||.+.|| | |++++. +++++++++++|++++++..++
T Consensus 450 gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 450 GICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp CBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 1 999964 8899999999999999876543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=341.69 Aligned_cols=349 Identities=15% Similarity=0.128 Sum_probs=268.7
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
.++...+++.. +++++|+|+.|.+ +. +.++.+.+.+...+..+ ...|++..|.+++|+++++++....+.+..+
T Consensus 18 ~~~~~~~~~~~-~g~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~ 91 (391)
T 3h14_A 18 DVMEAARRAEE-AGRRIIHMEVGQP-GT---GAPRGAVEALAKSLETD-ALGYTVALGLPALRQRIARLYGEWYGVDLDP 91 (391)
T ss_dssp HHHHHHHHHHH-TTCCCEECCCSSC-SS---CSCHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHHHHHh-cCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHHhCCCCCH
Confidence 34444455533 5678999999995 32 33444444444444433 4679999999999999999984322222336
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
++|. +|+||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..++.++.+|++++++. +
T Consensus 92 ~~v~--~t~g~~~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------~ 161 (391)
T 3h14_A 92 GRVV--ITPGSSGGFLLA--FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------D 161 (391)
T ss_dssp GGEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS------C
T ss_pred HHEE--EecChHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc------C
Confidence 7888 999999999998 77778899999999999999999999999999999984334578899988664 4
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.. .+. ....+++++++|+||.+|++
T Consensus 162 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~---~~~---~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 162 LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA---VTA---LELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC---CCG---GGTCSSSEEEEESSSTTCCT
T ss_pred CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC---cCh---hhcCCCEEEEEechhccCCc
Confidence 678888999999999999999999999999999999999999998876421 111 12357899999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ +++.+.+.......+++.+.|.++.+++... +++++.+++++++++.+.+.|++
T Consensus 236 G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~ 301 (391)
T 3h14_A 236 GWRVGWMVV---PED----QVRVVERIAQNMFICAPHASQVAALAALDCD-------AELQANLDVYKANRKLMLERLPK 301 (391)
T ss_dssp TSCCEEEEC---CGG----GHHHHHHHHHHTTCCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEe---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHhCCh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999964 778 7777877766667788999999998888732 67888999999999999999998
Q ss_pred hCCCCCccccccCcceeEecCC-----CHH-HHHHHhhhccEEEeCC---------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL-----TPY-QVDRLAKEFHIYMTQD---------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~-----~~~-~~~~ll~~~gI~i~pg---------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
++. .....+++++|+|+.+ +.+ +...+++++||.+.|| + ||+++. +++++++++++|++
T Consensus 302 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 302 AGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEA 377 (391)
T ss_dssp HTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHH
T ss_pred cCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 864 2345678889998743 444 4466676679999875 1 999987 88999999999999
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
++++..
T Consensus 378 ~~~~~~ 383 (391)
T 3h14_A 378 FMQARG 383 (391)
T ss_dssp HHHHC-
T ss_pred HHHHhc
Confidence 997654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=340.59 Aligned_cols=364 Identities=16% Similarity=0.148 Sum_probs=282.1
Q ss_pred cCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCC
Q 013839 29 VAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGK 108 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~ 108 (435)
+...+++.+..+.+..++. ++.|+|+.|.+ +. +.++.+.+.+...+... ...|++..|.+++|+++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 7 LELVSASEIRKLFDIAAGM--KDVISLGIGEP-DF---DTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHSCCCHHHHHHHHHHTC--SSCEECCCCSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHhCChhHHHHHHHHHhhh--cCeEecCCCCC-CC---CCCHHHHHHHHHHHhCC-CCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3334555566666666532 68999999995 32 33334444444444433 456988889999999999998322
Q ss_pred CCccccCCC-eeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHH
Q 013839 109 DSDVVKEGR-SAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 109 ~~~~~~~~~-v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
.+.+.++++ +. +++||++|+.++ +..++.+||+|++++|+|.++...++..|++++.++..+++++.+|+++|++
T Consensus 80 ~g~~~~~~~~v~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 155 (389)
T 1gd9_A 80 NGIEADPKTEIM--VLLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKK 155 (389)
T ss_dssp HCCCCCTTTSEE--EESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred hCCCCCCCCeEE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHH
Confidence 111123667 88 999999999988 6666789999999999999999999999999999988422357899999999
Q ss_pred HhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 188 DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.+..+++++++|
T Consensus 156 ~l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s 230 (389)
T 1gd9_A 156 YVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNG 230 (389)
T ss_dssp HCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEE
T ss_pred hcC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEec
Confidence 997 5688999999999999999999999999999999999999999999887531 11223333222467999999
Q ss_pred ccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..+|.... ..+++++.+++++++++
T Consensus 231 ~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~ 299 (389)
T 1gd9_A 231 FSKTFAMTGWRLGFVAA---PSW----IIERMVKFQMYNATCPVTFIQYAAAKALKDER----SWKAVEEMRKEYDRRRK 299 (389)
T ss_dssp STTTTTCGGGCCEEEEC---CHH----HHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCcccceEEEEE---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHH
Confidence 99999999999999964 777 88888776665567888999999999998642 11367888999999999
Q ss_pred HHHHHHHhhCCCCCccccccCcceeEecCC-----CHHH-HHHHhhhccEEEeCC--------C--cEEeccCCCCcHHH
Q 013839 348 TLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQ-VDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNY 411 (435)
Q Consensus 348 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~-~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~ 411 (435)
.+.+.|+++| +.+..+++|+|+|+.+ +.+. ...+++++||.+.|| + ||+++. +++++++
T Consensus 300 ~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~ 374 (389)
T 1gd9_A 300 LVWKRLNEMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEE 374 (389)
T ss_dssp HHHHHHHHTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHH
T ss_pred HHHHHHHHcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHH
Confidence 9999999886 4566788899998755 4444 455654789999875 1 999987 8899999
Q ss_pred HHHHHHHHHHhhh
Q 013839 412 LANAIHEVTRSEQ 424 (435)
Q Consensus 412 ~~~~l~~~l~~~~ 424 (435)
++++|++++++.+
T Consensus 375 ~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 375 AMDRMERVLKERK 387 (389)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887543
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=347.96 Aligned_cols=360 Identities=13% Similarity=0.127 Sum_probs=277.0
Q ss_pred CCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCC--CCCCCCCCcccHHHHHHHHHhHcCC
Q 013839 32 AAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGS--EFLESISASVSTKMVEESVKLVYGK 108 (435)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~ 108 (435)
..++.+.++..... ++++|+|+.|.| +.. ..|.+.+.+++... ... ...+|++..|.++||+++++++...
T Consensus 61 ~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~--~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~ 134 (448)
T 3aow_A 61 MRASEVRELLKLVE---TSDIISLAGGLP-NPK--TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKR 134 (448)
T ss_dssp CCCCHHHHHHHHHH---TSSSEECCCCCC-CGG--GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcc---CCCcEeCCCCCC-Cch--hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 44455545444442 467999999997 322 23444444444333 221 1357999999999999999998222
Q ss_pred CCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHH
Q 013839 109 DSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 109 ~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
.+.+ .+++|+ +|+|+++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|++.|+++
T Consensus 135 ~g~~-~~~~v~--~t~G~~~al~~~--~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~d~~~L~~~ 206 (448)
T 3aow_A 135 YGIS-QDNDIM--ITSGSQQALDLI--GRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLD-DE--GMKVEILEEK 206 (448)
T ss_dssp HCCC-TTSEEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TT--EECHHHHHHH
T ss_pred cCcC-ChhhEE--EeCcHHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccC-CC--CCCHHHHHHH
Confidence 1111 267888 999999999998 66678899999999999999999999999999999983 33 5999999999
Q ss_pred hh----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 189 IK----NAPDSSFFL-LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 189 i~----~~~~~~~~v-~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++ +. .+++++ ++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+ +..++++
T Consensus 207 l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~vi 282 (448)
T 3aow_A 207 LKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGRVI 282 (448)
T ss_dssp HHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSCEE
T ss_pred HhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCCEE
Confidence 86 32 357776 6899999999999999999999999999999999999999987542 12233333 3346899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++||||.++ +|+|+||+++ +++ +++.+.........+++.++|.++..+|.... +.+++++.+++++
T Consensus 283 ~~~S~SK~~~-~GlriG~v~~---~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~~~~~~~~~ 350 (448)
T 3aow_A 283 YLGTFSKILA-PGFRIGWMVG---DPG----IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY----LEKHIPEIRKFYK 350 (448)
T ss_dssp EEEESTTTTC-GGGCCEEEEE---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH----HHHHHHHHHHHHH
T ss_pred EEccchhhcc-ccccEEEEEe---CHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHH
Confidence 9999999999 9999999975 788 77777776655566789999999999997642 4577889999999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHH-HHHHHhhhccEEEeCC--------C----cEEeccCCC
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD--------G----RISMAGVTT 406 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg--------g----Ris~~~~~~ 406 (435)
++++.+.+.|++.. +.++.+..+.+|+|+|+.+ +.+ ++..+++ +||.+.|| + |++++..++
T Consensus 351 ~~~~~l~~~L~~~~-~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~~~~~~ 428 (448)
T 3aow_A 351 PRRDAMLEALEEFM-PEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNFTYVDE 428 (448)
T ss_dssp HHHHHHHHHHHHHC-CTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEECSSSCT
T ss_pred HHHHHHHHHHHHhC-CCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEeCCCCH
Confidence 99999999998751 1125666788999999865 344 4466654 69999875 1 999976578
Q ss_pred CcHHHHHHHHHHHHHhh
Q 013839 407 GNVNYLANAIHEVTRSE 423 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++|++++++.
T Consensus 429 e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 429 DKIMEGIKRLAETIKEE 445 (448)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=345.46 Aligned_cols=367 Identities=12% Similarity=0.123 Sum_probs=270.0
Q ss_pred cccccCCCCCCchhh---HHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHH
Q 013839 25 WWDHVAPAAKDPING---VTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEE 100 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ 100 (435)
+.+++...+++.... ..+++.. ++++.|||+.|.+ +. .. ++.+.+++.... .....+|++..|.+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~idl~~g~~-~~---~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARR-RGEDIIDLSMGNP-DG---PT-PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRA 83 (412)
T ss_dssp -----------CHHHHHHHHHHHHH-TTCCCEECSSCCC-CS---CC-CHHHHHHHHHTC---------CTTCCHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhh-cCCCEEecCCCCC-CC---CC-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Confidence 444444444443433 2333322 4678999999995 32 33 334444444433 3224569888999999999
Q ss_pred HHHhHcCCCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCC
Q 013839 101 SVKLVYGKDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKS 179 (435)
Q Consensus 101 ia~~l~~~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (435)
+++++....+.++++ +++. +++||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++++.
T Consensus 84 ia~~~~~~~g~~~~~~~~v~--~t~g~~~a~~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (412)
T 2x5d_A 84 ISHWYRDRYDVQIDPESEAI--VTIGSKEGLAHL--MLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFF 159 (412)
T ss_dssp HHHHHHHHHCCCCCTTTSEE--EESCHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHH
T ss_pred HHHHHHHHhCCCCCCCcCEE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCC
Confidence 999983211111235 5888 999999999998 66678899999999999999999999999999999884222455
Q ss_pred cChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 180 LDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 180 ~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+|+++|++++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+....
T Consensus 160 ~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~ 234 (412)
T 2x5d_A 160 NELERAIRESI---PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAK 234 (412)
T ss_dssp HHHHHHHHTEE---SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGG
T ss_pred CCHHHHHHhcc---cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCcc
Confidence 88999999887 5678888899999999999999999999999999999999999999887531 112333332224
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+++++++|+||.+|++|+|+||+++ +++ +++.+.........+.+.++|.++..+|.... +++++.+
T Consensus 235 ~~~i~~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~ 301 (412)
T 2x5d_A 235 DIAVEFFTLSKSYNMAGWRIGFMVG---NPE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQ------QCVRDIA 301 (412)
T ss_dssp GTEEEEEECC-CCSCTTSCCEEEEE---CHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred CcEEEEecCccccCCcccceEEEEc---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH------HHHHHHH
Confidence 6799999999999999999999974 888 77777776655567889999999998887543 5678888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------CHH-HHHHHhhhccEEEeCC--------C--cEEe
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------TPY-QVDRLAKEFHIYMTQD--------G--RISM 401 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~-~~~~ll~~~gI~i~pg--------g--Ris~ 401 (435)
++++++++.+.+.|++++ +.+..+++|+|+|+.+ +.+ ++..+++++||.+.|| + ||++
T Consensus 302 ~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~ 377 (412)
T 2x5d_A 302 RQYQQRRDVLVKGLREAG----WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFAL 377 (412)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCC----CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEe
Confidence 999999999999999886 4566788899998755 333 4466666689999975 2 9999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+. +++++++++++|++++++..
T Consensus 378 ~~-~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 378 IE-NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTT
T ss_pred cC-CHHHHHHHHHHHHHHHHhcC
Confidence 87 88999999999999997654
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=349.93 Aligned_cols=363 Identities=12% Similarity=0.038 Sum_probs=281.1
Q ss_pred ccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcC
Q 013839 28 HVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYG 107 (435)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 107 (435)
++...+++.+....+.. .++++|+|+.|.| +. +.++.+.+.+.+.+.......|++..|.+++|+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 4 RIEGLDSNVWVEFTKLA---ADPSVVNLGQGFP-DI---SPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGK 76 (410)
T ss_dssp GGTTCCCCHHHHTTTTT---TSTTSEECSSCCC-CS---CCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHHHh---cCCCeEEecCCCC-CC---CCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHH
Confidence 34444544443333222 4578999999995 43 34444444444444443355799989999999999999843
Q ss_pred CCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC---------CCC
Q 013839 108 KDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD---------PDS 177 (435)
Q Consensus 108 ~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---------~~~ 177 (435)
..+.++++ ++|. +++||++|+.++ +..++.+||+|+++.|+|..+...++..|++++.+++.. +++
T Consensus 77 ~~~~~~~~~~~i~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 152 (410)
T 3e2y_A 77 IYQRQIDPNEEIL--VAVGAYGSLFNS--IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSD 152 (410)
T ss_dssp HHTSCCCTTTSEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGG
T ss_pred HhCCCCCCCCCEE--EeCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccC
Confidence 22222335 6888 999999999998 666788999999999999999999999999999998742 135
Q ss_pred CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 178 KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 178 ~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
+.+|++++++++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+..
T Consensus 153 ~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~ 227 (410)
T 3e2y_A 153 WTFDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPG 227 (410)
T ss_dssp EECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT
T ss_pred CcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCC
Confidence 6789999999886 6789999999999999999999999999999999999999999999887642 2223444444
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh-hHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN-LKSLWIDEVK 336 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-l~~~~~~~~~ 336 (435)
..++++++.|+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..+|.+.. ....+.++++
T Consensus 228 ~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 300 (410)
T 3e2y_A 228 MWERTITIGSAGKTFSVTGWKLGWSIG---PAH----LIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFN 300 (410)
T ss_dssp CGGGEEEEEEHHHHSSCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHH
T ss_pred ccCeEEEEecchhhcCCCCceEEEEEE---CHH----HHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHH
Confidence 457899999999999999999999964 888 88888777666677889999999988886300 0000125678
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------------HHHHHHHhhhccEEEeCC----
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------------PYQVDRLAKEFHIYMTQD---- 396 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~~~~~ll~~~gI~i~pg---- 396 (435)
+.+++++++++.+.+.|+++| +.+..+++|+|+|+.+. .+++..+++++||.+.||
T Consensus 301 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~ 376 (410)
T 3e2y_A 301 SLPKELEVKRDRMVRLLNSVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC 376 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhC
Confidence 888999999999999999886 56678899999987542 156677888899999875
Q ss_pred ---------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 397 ---------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 397 ---------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+ ||+++. +++++++++++|++
T Consensus 377 ~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 377 DSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp CTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence 1 999977 89999999999875
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=340.88 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=271.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccCC-CeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV-VKEG-RSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~v~~~~t~ 124 (435)
++++++|+|+.|.+ +. +.++ .+.+++.+.... ...|++..|.+++|+++++++....+.+ +.++ +|+ +|+
T Consensus 27 ~~g~~~i~l~~~~~-~~---~~~~-~v~~a~~~~~~~-~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~--~t~ 98 (396)
T 3jtx_A 27 PEGMEAVPLHIGEP-KH---PTPK-VITDALTASLHE-LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEIL--PVL 98 (396)
T ss_dssp CTTCCCEECSCCSC-CS---CCCH-HHHHHHHHTGGG-GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE--EES
T ss_pred ccCCCeEEeCCcCC-CC---CCCH-HHHHHHHHHhhh-ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE--EcC
Confidence 45789999999995 33 3333 344444443333 5679999999999999999984332222 3366 888 999
Q ss_pred CchhHHHHHHHHHHHhCCC-----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEE
Q 013839 125 SGTGACRLFAEFQRRFHPE-----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL 199 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v 199 (435)
|+++++.++ +..++.+| |+|+++.|+|.++...++..|++++.+++ +++++.+|+++|++++. ++++++
T Consensus 99 g~~~al~~~--~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~---~~~~~v 172 (396)
T 3jtx_A 99 GSREALFSF--VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVW---KRTKLV 172 (396)
T ss_dssp SHHHHHHHH--HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHH---HTEEEE
T ss_pred CcHHHHHHH--HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhc---cCcEEE
Confidence 999999998 66778887 79999999999999999999999999998 56677889999999998 578999
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH---HhhhcCCeEEEEecccccccccC
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR---IFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....... .+....++++++.|+||.++++|
T Consensus 173 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 173 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 9999999999999999999999999999999999999999887641 1111111 11223578999999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||+++ +++ +++.+.+.......+++.++|.++..++... +++++.+++++++++.+.+.|+++
T Consensus 252 ~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 252 LRSGFVAG---DAE----LLKNFLLYRTYHGSAMSIPVQRASIAAWDDE-------QHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp GCCEEEEE---CHH----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceEEEEe---CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999964 888 8888887666666788999999999988763 677888999999999999999775
Q ss_pred CCCCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCC--------------C--cEEeccCCCCcHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQD--------------G--RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pg--------------g--Ris~~~~~~e~i~~~~~~l 416 (435)
. .+..+++|+|+|+.+. .+++..+++++||.+.|| + ||+++. +++++++++++|
T Consensus 318 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l 391 (396)
T 3jtx_A 318 F-----DVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAEDI 391 (396)
T ss_dssp S-----CCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHHHH
T ss_pred C-----CccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHHHH
Confidence 2 3556788999998763 345577767789999774 2 999977 899999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
++++
T Consensus 392 ~~~l 395 (396)
T 3jtx_A 392 VSLY 395 (396)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=346.43 Aligned_cols=344 Identities=13% Similarity=0.070 Sum_probs=272.9
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCchhH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSGTGA 129 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg~~a 129 (435)
..|||+.|+| ++.+.++.+.+.+.+.+.......|++..|.+++++++++++....+.++++ ++++ +++||++|
T Consensus 40 ~~id~~~g~~---~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~--~~~g~~~a 114 (407)
T 3nra_A 40 RPVDFSHGDV---DAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLI--ITPGTQGA 114 (407)
T ss_dssp CCEETTSCCT---TTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEE--EESHHHHH
T ss_pred ceeeecCcCC---CCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE--EeCCcHHH
Confidence 4799999997 2234444555554555443223469888999999999999983222222223 6888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC----CCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD----PDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+.++ +.+++.+||+|+++.|+|.++...++..|++++.++... ++++++|+++|++++. ++++++++++||
T Consensus 115 ~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~ 189 (407)
T 3nra_A 115 LFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNPN 189 (407)
T ss_dssp HHHH--HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH---TTCCEEEEESSC
T ss_pred HHHH--HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh---hCCcEEEEcCCC
Confidence 9988 666788999999999999999999999999999998731 3568899999999998 467888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+. ...++++++.|+||.+|++|+|+||+++
T Consensus 190 nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (407)
T 3nra_A 190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 267 (407)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence 9999999999999999999999999999999999887642 222333332 3457899999999999999999999974
Q ss_pred EecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
+++ +++.+.........+++.+.|.++..+|.... +++++.+++++++++.+.+.|++++ .+.+
T Consensus 268 ---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~ 331 (407)
T 3nra_A 268 ---SRA----IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP------GWMEDRIARHQAIRDELLHVLRGCE---GVFA 331 (407)
T ss_dssp ---CHH----HHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT------THHHHHHHHHHHHHHHHHHHHHTST---TCBC
T ss_pred ---CHH----HHHHHHHHHhhhccCCChHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHhcCC---Ccee
Confidence 888 88888877766667788888888888887543 4567778888999999999998873 2567
Q ss_pred cccCcceeEecCC-----CHH-HHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 365 ITNQLGMFCFSGL-----TPY-QVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 365 ~~~~~g~~~~~~~-----~~~-~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+++++|+|+.+ +.+ +...+++++||.+.||. ||+++. +++++++++++|++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 332 RTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 7788889999855 333 44666566799999751 999987 8999999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=338.19 Aligned_cols=354 Identities=14% Similarity=0.124 Sum_probs=274.4
Q ss_pred hhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCC
Q 013839 38 NGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGR 117 (435)
Q Consensus 38 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 117 (435)
....++... ++++.|+|+.|.+ +. +.++.+.+.+...+..+ ...|++..|.+++|+++++++....+.+..+++
T Consensus 19 ~~~~~~~~~-~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~ 92 (388)
T 1j32_A 19 DAKAKAMKA-EGIDVCSFSAGEP-DF---NTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADN 92 (388)
T ss_dssp HHHHHHHHT-TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred HHHHHHHHh-cCCCEEECCCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh
Confidence 333444432 4678999999996 33 33334444444444333 456999889999999999998422111223678
Q ss_pred eeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 118 SAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 118 v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+. +++||++|+.++ +..++.+||+|++++|+|..+...++..|++++.++...++++.+|+++|+++++ ++++
T Consensus 93 v~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~ 165 (388)
T 1j32_A 93 IL--VTNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT---PKTK 165 (388)
T ss_dssp EE--EESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC---TTEE
T ss_pred EE--EcCCHHHHHHHH--HHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC---cCce
Confidence 88 999999999998 6666889999999999999999999999999999987433357899999999997 5789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G 276 (435)
++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.|+||.+|++|
T Consensus 166 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 166 LLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCCCHHHccccccCCEEEEeechhccCCcc
Confidence 999999999999999999999999999999999999999999887541 1112222211 1357899999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||+++ +++ +++.+.........+++.+.|.++..+|.... +++++.+++++++++.+.+.|+++
T Consensus 244 ~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 244 WRVGFLAG---PVP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------DCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp TCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEe---CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999964 777 77777776666667888999998888886433 567788899999999999999887
Q ss_pred CCCCCccccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 357 GSSLNWEHITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ ++.+..+++++|+|+.+ +.+.+ ..+++++||.+.|| + |++++. +++++++++++|++++++
T Consensus 311 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 311 P---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-DLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp T---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred C---CCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 3 25667788899998854 44444 56655589999986 2 999975 889999999999998865
Q ss_pred h
Q 013839 423 E 423 (435)
Q Consensus 423 ~ 423 (435)
+
T Consensus 387 ~ 387 (388)
T 1j32_A 387 I 387 (388)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=341.90 Aligned_cols=342 Identities=15% Similarity=0.109 Sum_probs=267.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg 126 (435)
++.+.|+|+.|.+ +. ..++.+.+.+.+.+.......|++..|.+++|+++++++....+.+.++ ++|. +++|+
T Consensus 45 ~g~~~idl~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~--~t~G~ 118 (404)
T 2o1b_A 45 GPLPLINMAVGIP-DG---PTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVC--ILYGT 118 (404)
T ss_dssp CSSCCEECCCCSC-SS---CCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEE--EESSH
T ss_pred CCCCEEecCCcCC-CC---CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEE--EcCCc
Confidence 4567999999996 32 2333333333333332223469888899999999999983211111224 6888 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++++.+|+++|++++. ++++++++++|+|
T Consensus 119 ~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~l~~p~n 192 (404)
T 2o1b_A 119 KNGLVAV--PTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWSKVDSQII---DKTKLIYLTYPNN 192 (404)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC-TTTCCCCGGGSCHHHH---HHEEEEEECSSCT
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccC-cccCcCCHHHHHHhhc---cCceEEEEcCCCC
Confidence 9999998 66678899999999999999999999999999999883 4556789999999987 5689999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++||+++|+||+|..+.+++. ..++..+.+..+++++++|+||.+|++|+|+||+++
T Consensus 193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-- 267 (404)
T 2o1b_A 193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK---NPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-- 267 (404)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC---CCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE--
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCCEEEEEecchhccCchhheEeEec--
Confidence 999999999999999999999999999999999887531 112222222235789999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.+.|.++..+|... .+++++.+++++++++.+.+.|++++ +.+..
T Consensus 268 -~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 332 (404)
T 2o1b_A 268 -NKD----MIQALKKYQTHTNAGMFGALQDAAIYALNHY------DDFLEEQSNVFKTRRDRFEAMLAKAD----LPFVH 332 (404)
T ss_dssp -CHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHTT----CCEEC
T ss_pred -CHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHHhcC----CeecC
Confidence 888 7777777665556788999999998888653 26678889999999999999999875 45667
Q ss_pred cCcceeEecCC----CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+++|+|+|+.+ +. ++++.+++++||.+.|| + ||+++. +++++++++++|++++++
T Consensus 333 ~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 333 AKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGG
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 88899999755 33 34566666789999985 2 999987 889999999999887754
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=340.51 Aligned_cols=367 Identities=13% Similarity=0.136 Sum_probs=274.0
Q ss_pred cCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHH----------HHhcCCCCCCCCCCcccHHHH
Q 013839 29 VAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAE----------AKIAGSEFLESISASVSTKMV 98 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Y~~~~g~~~lr 98 (435)
+...+++.+.++.+...+ ..+++|+|+.|.| +.. .+|...+.... ... ....+|.+..|.++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~p-~~~--~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~lr 84 (425)
T 2r2n_A 11 SAARNPSPIRTMTDILSR-GPKSMISLAGGLP-NPN--MFPFKTAVITVENGKTIQFGEEMM--KRALQYSPSAGIPELL 84 (425)
T ss_dssp HHTCCCCSGGGHHHHHHH-SCTTCEECCCCCC-CGG--GCSEEEEEEEETTSCCEEECHHHH--HHHTSCCCTTCCHHHH
T ss_pred HhcCCCchHHHHHHHhhc-CCCCeEEcCCcCC-Cch--hCCHHHHHHHHhhcccccccccch--hhhcCCCCCCCCHHHH
Confidence 334455556555555543 2367999999998 432 22211110000 000 0124699999999999
Q ss_pred HHHHHhHc---CCCCcccc----CCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee
Q 013839 99 EESVKLVY---GKDSDVVK----EGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH 171 (435)
Q Consensus 99 ~~ia~~l~---~~~~~~~~----~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 171 (435)
+++++++. +....+.+ +++|+ +|+|+++|+.++ +..++.+||+|++++|+|.++...++..|++++.++
T Consensus 85 ~~ia~~l~~~~g~~~~~~~~~~~~~~i~--~t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 160 (425)
T 2r2n_A 85 SWLKQLQIKLHNPPTIHYPPSQGQMDLC--VTSGSQQGLCKV--FEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVA 160 (425)
T ss_dssp HHHHHHHHHHHCCTTTTSCGGGTCEEEE--EESSHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEEC
T ss_pred HHHHHHHHHhcCCCCccccccCCcCcEE--EeCcHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeC
Confidence 99999983 33221000 25787 999999999998 677788999999999999999999999999999998
Q ss_pred ecCCCCCCcChHhHHHHhhcCC---------CCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 172 YYDPDSKSLDFAALMDDIKNAP---------DSSFFLL-HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~---------~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
+. ++ ++|+++|++.+++.+ +++++++ +++||||||.+++.+++++|+++|++||+++|+||+|.++.
T Consensus 161 ~~-~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 161 SD-ES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp EE-TT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred cC-CC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 83 33 699999999987321 3456664 58999999999999999999999999999999999999888
Q ss_pred CCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHH
Q 013839 242 SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~ 321 (435)
+++. ...++..+ +..+++++++|+||.++ +|+|+||+++ +++ +++.+.........+++.++|.++..+
T Consensus 238 ~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~~---~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~ 306 (425)
T 2r2n_A 238 FNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLTG---PKP----LIERVILHIQVSTLHPSTFNQLMISQL 306 (425)
T ss_dssp SSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEEE---EHH----HHHHHHHHHHTTTCSSCHHHHHHHHHH
T ss_pred CCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEec---CHH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 7542 12233333 33468999999999999 9999999974 777 888888776666678899999999998
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeC
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~p 395 (435)
|.... .+.+.+++++.+++++++++.+.+.|++. +. ...+..+++|+|+|+.+ +.+++.+.+.++||.+.|
T Consensus 307 l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~p 383 (425)
T 2r2n_A 307 LHEWG-EEGFMAHVDRVIDFYSNQKDAILAAADKWLTG--LAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLP 383 (425)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEE
T ss_pred HHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEec
Confidence 86521 12355778899999999999999999875 21 12455678999999854 234455556789999987
Q ss_pred C-----------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 396 D-----------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 396 g-----------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
| + ||+++..+++++++++++|++++++
T Consensus 384 g~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 384 GNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp GGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 4 2 9999745899999999999998864
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=340.24 Aligned_cols=352 Identities=14% Similarity=0.181 Sum_probs=272.7
Q ss_pred CCCeeeeecceecCCCCCcccchH--HHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCC---eeeEec
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQC--VREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGR---SAGVQA 123 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~---v~~~~t 123 (435)
.++.|||+.|.|. .. ..++.. ++++.+++.......|++..|.+++|+++++++...+ ....+++ +. +|
T Consensus 46 ~~~~i~l~~g~~~-~~--~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~--~t 119 (430)
T 2x5f_A 46 KSTTYNATIGMAT-NK--DGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPI--VT 119 (430)
T ss_dssp TTCSEECCCSSCE-ET--TEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCE--EE
T ss_pred CCCcEEeeeeecc-CC--CCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEE--Ec
Confidence 3578999999852 11 222322 3433333322135679998899999999999984322 2233567 88 89
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
+|+++|+.++ +..++.+||+|++++|+|.++...++. .|++++.++.. ++++++|+++|++++++.+.++++++++
T Consensus 120 ~g~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 196 (430)
T 2x5f_A 120 NALTHGLSLV--GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIF-DKDGHYTTDSLVEALQSYNKDKVIMILN 196 (430)
T ss_dssp SHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCB-CTTSCBCSHHHHHHHHHCCSSEEEEEEC
T ss_pred CCchHHHHHH--HHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEecc-CccCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence 9999999998 666788999999999999999999999 99999999884 3237899999999998543478999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-----cCceeeeeccCCCccCCCCcccHHHHH-HhhhcCCe---EEEEeccccccc
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKV-----KGHFPFFDMAYQGFASGDLDKDAQAIR-IFLEDEHL---IGCAQSYAKSMG 273 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~s~SK~~g 273 (435)
+||||||.+++.+++++|+++|++ ||+++|+||+|.++.+++. ...++. .+.+..++ +++++|+||.+|
T Consensus 197 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 274 (430)
T 2x5f_A 197 YPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEFF 274 (430)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCCC
Confidence 999999999999999999999999 9999999999999987642 112332 33333567 999999999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhc----cccCCChhHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARA----MYGSPPVHGILLVATILS-DPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~q~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
++|+|+||+++.+.+++ +++.+...... .+.+++.++|.++..+|. +.. |.+++++.+++++++++.
T Consensus 275 ~~G~riG~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~ 346 (430)
T 2x5f_A 275 AWGFRVGFMTFGTSDQT----TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQ----FDKEIEQNIQTLKERYEV 346 (430)
T ss_dssp CGGGCCEEEEEBCCCHH----HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEecCCHH----HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChH----HHHHHHHHHHHHHHHHHH
Confidence 99999999962113666 66666655444 567899999999999998 753 445667799999999999
Q ss_pred HHHHHH----hhCCCCCccccccCcceeEecCC---CHH-HHHHHhhhccEEEeCCC----cEEeccCCCCcHHHHHHHH
Q 013839 349 LRQNLE----KLGSSLNWEHITNQLGMFCFSGL---TPY-QVDRLAKEFHIYMTQDG----RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 349 l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~ll~~~gI~i~pgg----Ris~~~~~~e~i~~~~~~l 416 (435)
+.+.|+ +.+ +.+..+++|+|+|+.+ +.+ +...+++++||.+.||+ ||+++..+++++++++++|
T Consensus 347 l~~~L~~~~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~l 422 (430)
T 2x5f_A 347 TKEVVYADQYHSH----WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSI 422 (430)
T ss_dssp HHHHHTCGGGTTT----EEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHHH
T ss_pred HHHHHHhhCCCCC----ceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 999998 443 5677788999998854 444 44666554899999973 9999844889999999999
Q ss_pred HHHHHhh
Q 013839 417 HEVTRSE 423 (435)
Q Consensus 417 ~~~l~~~ 423 (435)
+++++++
T Consensus 423 ~~~l~~~ 429 (430)
T 2x5f_A 423 AKAIDDL 429 (430)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998754
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=335.22 Aligned_cols=340 Identities=14% Similarity=0.156 Sum_probs=263.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++|+|+.|.| +. +.++.+.+.+.+.+.... ...|++..|.+++|+++++++....+.+.++++|. +|+|
T Consensus 34 ~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~--~~~g 107 (398)
T 3ele_A 34 KENVYDFSIGNP-SI---PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLY--MTMG 107 (398)
T ss_dssp GGGCEECCSCCC-CS---CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE--EESS
T ss_pred CCCeEEeecCCC-CC---CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEE--EccC
Confidence 468999999985 33 333333333333333211 45698999999999999999842222223477888 9999
Q ss_pred chhHHHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p 204 (435)
+++|+.++ +..++.+| |+|++++|+|.++...++..|++++.+|. +++++++|+++|++++. ++++++++++|
T Consensus 108 ~~~al~~~--~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~---~~~~~v~~~~p 181 (398)
T 3ele_A 108 AAASLSIC--FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA-DTEHFQIDFDALEERIN---AHTRGVIINSP 181 (398)
T ss_dssp HHHHHHHH--HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECC-CTTTSSCCHHHHHHTCC---TTEEEEEECSS
T ss_pred HHHHHHHH--HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHhC---cCCCEEEEcCC
Confidence 99999998 67778999 99999999999999999999999999998 45578999999999997 67899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh------cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 205 HNPTGVDPTEEQWREISYQFKV------KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~------~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
|||||.+++.+++++|+++|++ ||+++|+||+|.++.+++.. .+ ...+..+++++++|+||.+|++|+|
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~---~~~~~~~~~i~~~s~sK~~~~~G~r 256 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK--VP---FVTKYYDNTLVCYSYSKSLSLPGER 256 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC--CC---CGGGTCSSEEEEEESTTTSSCTTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC--cC---ChHhhcCCeEEEEehhhcCCCccce
Confidence 9999999999999999999999 99999999999999876411 11 1223457899999999999999999
Q ss_pred ccEEEEEecChhHHH--HHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 279 VGCLSILCVDSKQAA--AIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 279 vG~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+||+++ +++..+ .+...+...... .+.+++.+.|.++..++.+.. .+++++++++.+.+.|++
T Consensus 257 ~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~l~~~L~~ 322 (398)
T 3ele_A 257 IGYVLV---PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDLLYEGLTR 322 (398)
T ss_dssp CEEEEC---CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEE---cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHH
Confidence 999964 544211 234444443332 356778888888888877542 356778888899999988
Q ss_pred hCCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++ +.+..+++++|+|+.+ +.+.+.+.++++||.+.||. ||+++. +++++++++++|++++++..
T Consensus 323 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 323 IG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp HT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred cC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence 86 4577889999999865 45555445577999999872 999974 89999999999999987653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=330.72 Aligned_cols=338 Identities=16% Similarity=0.151 Sum_probs=266.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+++.|+|+.|.+ +. +.++.+.+.+...+... ...|++..|.+++|+++++++....+.+++++++. +++||+
T Consensus 39 ~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~--~~~g~t 111 (389)
T 1o4s_A 39 KGEDVINLTAGEP-DF---PTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVV--VTNGAK 111 (389)
T ss_dssp TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEE--EESHHH
T ss_pred cCCCEEEccCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEE--EecCHH
Confidence 4578999999996 32 33334444444444333 45698888999999999999842211122367888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.++..+++++.+|+++|+++++ ++++++++++|+||
T Consensus 112 ~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~np 186 (389)
T 1o4s_A 112 QALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNP 186 (389)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc---cCceEEEEcCCCCC
Confidence 999998 6666889999999999999999999999999999988432467899999999987 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|..+.+++. ..++..+....+++++++|+||.+|++|+|+||+++
T Consensus 187 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~--- 260 (389)
T 1o4s_A 187 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS--- 260 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC---
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEe---
Confidence 99999999999999999999999999999999887531 112333322356799999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.........+++.+.|.++..+|... .++.+++++++++.+.+.|++++ +.+..+
T Consensus 261 ~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 323 (389)
T 1o4s_A 261 SEK----VATAVSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQTFKERKNFVVERLKKMG----VKFVEP 323 (389)
T ss_dssp CHH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHHHTT----CCCCCC
T ss_pred CHH----HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHHHHHHhcC----CeeecC
Confidence 777 7777777665556678889999988888753 35667788889999999998875 456667
Q ss_pred CcceeEecCC--CHHH-HHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL--TPYQ-VDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~--~~~~-~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++|+|+|+.+ +.+. .+.+++++||.+.|| + |++++. +++++++++++|+++++
T Consensus 324 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 324 EGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALDRIEDFLN 387 (389)
T ss_dssp SBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred CcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 8899999866 4444 466655789999886 2 999986 88999999999998774
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=337.06 Aligned_cols=362 Identities=14% Similarity=0.081 Sum_probs=273.5
Q ss_pred cccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc
Q 013839 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
+++...+++.+ ..+.++.. .++.|+|+.|.+ +. +.++.+.+.+.+.+..+ ...|++..|.+++++++++++.
T Consensus 5 ~~~~~~~~~~~-~~~~~~~~--~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~ 76 (411)
T 2o0r_A 5 SRLRPYATTVF-AEMSALAT--RIGAVNLGQGFP-DE---DGPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRR 76 (411)
T ss_dssp GGGGGGSSCHH-HHHHHHHH--TTTCEESSCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred hHhHhcCccHH-HHHHHHhh--cCCeeeccCcCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHH
Confidence 34444444433 44444432 356899999985 32 23333444444444333 4569988999999999999983
Q ss_pred CCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHh
Q 013839 107 GKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAA 184 (435)
Q Consensus 107 ~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~ 184 (435)
...+.+..++ ++. +++||++|+.++ +..++.+||+|++++|+|.++...++..|++++.++..++ +++.+|+++
T Consensus 77 ~~~g~~~~~~~~v~--~t~g~~~al~~~--~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~ 152 (411)
T 2o0r_A 77 RHFGVDYDPETEVL--VTVGATEAIAAA--VLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADA 152 (411)
T ss_dssp HHHCCCCCTTTSEE--EEEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHH
T ss_pred HHcCCCCCCCceEE--EeCCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHH
Confidence 2111122356 888 999999999998 6666889999999999999999999999999999987422 246799999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
|+++++ ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....+++++
T Consensus 153 l~~~l~---~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~ 227 (411)
T 2o0r_A 153 LRRAVT---PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTIT 227 (411)
T ss_dssp HHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEE
T ss_pred HHHhhc---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEE
Confidence 999997 5789999999999999999999999999999999999999999999887531 11233333222467999
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+.|+||.+|++|+|+||+++ +++ +++.+.........+.+.+.|.++..+|... .+++++.++++++
T Consensus 228 ~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~ 294 (411)
T 2o0r_A 228 ISSAAKMFNCTGWKIGWACG---PAE----LIAGVRAAKQYLSYVGGAPFQPAVALALDTE------DAWVAALRNSLRA 294 (411)
T ss_dssp EEEHHHHTTCTTTCEEEEEC---CHH----HHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC------HHHHHHHHHHHHH
T ss_pred EeechhhcCCccceEEEEee---CHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHH
Confidence 99999999999999999964 787 7777776555445667788888888888532 2567888899999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHH-HHHHHhhhccEEEeCC-----------------C---
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPY-QVDRLAKEFHIYMTQD-----------------G--- 397 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~-~~~~ll~~~gI~i~pg-----------------g--- 397 (435)
+++.+.+.|++++ +.+..+++|+|+|+.+ +.. +...+++++||.+.|| +
T Consensus 295 ~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~ 370 (411)
T 2o0r_A 295 RRDRLAAGLTEIG----FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHL 370 (411)
T ss_dssp HHHHHHHHHHHHT----CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGC
T ss_pred HHHHHHHHHHHcC----CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCe
Confidence 9999999998886 4566788898998754 233 4466666789999752 2
Q ss_pred -cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 398 -RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 -Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
||+++. +++++++++++|++++++.
T Consensus 371 iRis~~~-~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 371 VRFTFCK-RDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp EEEECCS-CHHHHHHHHHHHGGGGC--
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHhcc
Confidence 999976 8889999999998876543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=331.90 Aligned_cols=357 Identities=12% Similarity=0.085 Sum_probs=272.4
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
.+++...+.+ .+....++.. .++.|+|+.|.+ +. +.++.+.+.+.+.+..+ ...|++..|.+++|+++++++
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~--~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l 80 (386)
T 1u08_A 9 QSKLPQLGTT-IFTQMSALAQ--QHQAINLSQGFP-DF---DGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKT 80 (386)
T ss_dssp CCSCCCCCCC-HHHHHHHHHH--HTTCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHH
T ss_pred chhhhcCCcc-HHHHHHHHHh--cCCeEEecCCCC-CC---CCCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHH
Confidence 3445555544 3344444432 257899999986 33 23333433333444333 457988889999999999998
Q ss_pred cCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHh
Q 013839 106 YGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 106 ~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 184 (435)
....+.+.+++ ++. +++|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.++. +++++++|+++
T Consensus 81 ~~~~g~~~~~~~~v~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~ 155 (386)
T 1u08_A 81 ERLYGYQPDADSDIT--VTAGATEALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQE 155 (386)
T ss_dssp HHHHSCCCCTTTTEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHHH
T ss_pred HHHhCCCCCCCCCEE--EcCChHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeec-CcccCcCCHHH
Confidence 22111122366 888 999999999988 6666789999999999999999999999999999988 34467899999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
|++++. ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....+++++
T Consensus 156 l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~ 230 (386)
T 1u08_A 156 FAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ--GHASVLAHPQLRERAVA 230 (386)
T ss_dssp HHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS--CCCCGGGSHHHHTTEEE
T ss_pred HHHhhc---ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC--CCcChhcccCccCcEEE
Confidence 999996 6789999999999999999999999999999999999999999999887542 11122222222467999
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+.|+||.+|++|+|+||+++ +++ +++.+.........+.+.+.|.++..+|.... +++++.++++++
T Consensus 231 ~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~ 297 (386)
T 1u08_A 231 VSSFGKTYHMTGWKVGYCVA---PAP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEP------EHYLALPDFYRQ 297 (386)
T ss_dssp EEEHHHHTTCGGGCCEEEEC---CHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT------HHHHTHHHHHHH
T ss_pred EecchhhcCCcccceEEEEc---CHH----HHHHHHHHHHhhccCCChHHHHHHHHHHhCCc------HHHHHHHHHHHH
Confidence 99999999999999999964 777 77777776555556788889988888886432 567888999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHHHH-HHHhhhccEEEeCC--------C----cEEeccCC
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPYQV-DRLAKEFHIYMTQD--------G----RISMAGVT 405 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~-~~ll~~~gI~i~pg--------g----Ris~~~~~ 405 (435)
+++.+.+.|++++ +.+..+++|+|+|+.+ +.+.+ ..+++++||.+.|| + ||+++. +
T Consensus 298 ~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~ 372 (386)
T 1u08_A 298 KRDILVNALNESR----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-K 372 (386)
T ss_dssp HHHHHHHHTTSSS----CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-C
T ss_pred HHHHHHHHHHHCC----CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-C
Confidence 9999999998775 5566778889999854 34444 55666789999864 2 999976 8
Q ss_pred CCcHHHHHHHHHH
Q 013839 406 TGNVNYLANAIHE 418 (435)
Q Consensus 406 ~e~i~~~~~~l~~ 418 (435)
++++++++++|++
T Consensus 373 ~~~i~~~~~~l~~ 385 (386)
T 1u08_A 373 ESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 8899999998864
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=339.02 Aligned_cols=360 Identities=12% Similarity=0.061 Sum_probs=276.2
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG 116 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 116 (435)
++.....+...+++++|+|+.|.+ +. +.++.+.+.+...+..+....|++..|.+++|+++++++....+.++.++
T Consensus 31 ~~~~~~~~~~~~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~ 106 (437)
T 3g0t_A 31 LVALVTNLEKATGTKFCRMEMGVP-GL---PAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPAR 106 (437)
T ss_dssp HHHHHHHHHHHHTCCCEECCCCSC-CS---CCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHHHHHHHHhcCCCEEeccCcCC-CC---CCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcc
Confidence 334444443335678999999995 32 33444444444444333236799999999999999999953222233467
Q ss_pred CeeeEecCCchhHHHHHHHHHHHh--CCCC--EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRF--HPES--HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+++ +|+|+++|+.++ +..++ .+|| +|+++.|+|.++...++..|++++.+++. ++++.+|++.|++++.+
T Consensus 107 ~i~--~t~g~t~al~~~--~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~- 180 (437)
T 3g0t_A 107 ACV--PTVGSMQGCFVS--FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT- 180 (437)
T ss_dssp GEE--EESHHHHHHHHH--HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT-
T ss_pred cEE--EeCCHHHHHHHH--HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc-
Confidence 888 999999999998 66667 8999 99999999999999999999999999984 56678999999999932
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH---HHH-HHhhhcCCeEEEEecc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA---QAI-RIFLEDEHLIGCAQSY 268 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~s~ 268 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+|++|..+.+++. ... +++ ..+.+..+++++++|+
T Consensus 181 -~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~ 258 (437)
T 3g0t_A 181 -GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSS 258 (437)
T ss_dssp -TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEES
T ss_pred -CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcC
Confidence 5678898999999999999999999999999999999999999998877521 111 001 2333346789999999
Q ss_pred cccccccCCcccEEEEEecChhHHHHHHH-H-----------------HHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDSKQAAAIRS-Q-----------------IQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
||.+|++|+|+||+++ +++ +++ . +.+.......+++.++|.++..+|.... .
T Consensus 259 sK~~~~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~ 328 (437)
T 3g0t_A 259 SKAFSYAGQRIGVLMI---SGK----LYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN---D 328 (437)
T ss_dssp TTTTSCGGGCCEEEEE---CHH----HHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH---T
T ss_pred ccCCCCccceeEEEEE---CHH----HhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH---h
Confidence 9999999999999974 777 666 5 6665555567889999999998886531 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc------cc-CcceeEecCC---CHHHHHHHhhhccEEEeCC----
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI------TN-QLGMFCFSGL---TPYQVDRLAKEFHIYMTQD---- 396 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~-~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg---- 396 (435)
|..++++.+++++++++.+.+.|++++ +.+. .+ .+++|+|+.+ +.+.+...|.++||.+.|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~ 404 (437)
T 3g0t_A 329 GEYNFRDSVIEYGRKARIMKKMFLDNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTG 404 (437)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccC
Confidence 112278889999999999999999885 4555 34 7889999854 5555544445679999986
Q ss_pred ----C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 397 ----G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 ----g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ |++++..+++++++++++|++++++
T Consensus 405 ~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 405 SKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 2 9999866899999999999998753
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=338.21 Aligned_cols=340 Identities=14% Similarity=0.164 Sum_probs=264.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC----CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG----SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.+++++|+|+.|.+ +. +.++.+++.+.+.+.. .....|++..|.++||+++++++. .+...++++|+ +
T Consensus 66 ~~~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~--~ 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDT-TE---PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIF--I 137 (449)
T ss_dssp CTTCCCEECSSCCC-CC---CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEE--E
T ss_pred CCCCCEEEeeCCCC-CC---CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEE--E
Confidence 45678999999985 43 3344444444343331 235679998999999999999985 33334477888 9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC----------eeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP----------ERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
++|+++++.++ .+++.+||+|++++|+|.++...++..|++ ++.+++.+++++..|++++
T Consensus 138 t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 138 SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 99999998876 456789999999999999999999999998 8888884433455554432
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.|+||.+
T Consensus 208 -~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~ 284 (449)
T 3qgu_A 208 -KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKYA 284 (449)
T ss_dssp -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred -CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhhc
Confidence 4577888889999999999999999999999999999999999999988641 2234444433457799999999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHH--------HHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRS--------QIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
|++|+|+||+++ +++ +++ .+.......+.+++.++|.++..++.+.. .+++++.++++++
T Consensus 285 g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~ 352 (449)
T 3qgu_A 285 GFTGVRLGWTVV---PKA----LKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYKE 352 (449)
T ss_dssp TCTTCCCEEEEC---CTT----CBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHH
T ss_pred CCccceeEEEec---CHH----HHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHHH
Confidence 999999999964 666 443 45554555667889999999999987632 2567888999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC---CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHH
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVN 410 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~ 410 (435)
+++.+.+.|+++| +.+..+++++|+|+.+ +. +++..+++++||.+.|| + ||+++. ++++++
T Consensus 353 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~ 427 (449)
T 3qgu_A 353 NAQILKTTFTEMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENIL 427 (449)
T ss_dssp HHHHHHHHHHHTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHH
T ss_pred HHHHHHHHHHHCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHH
Confidence 9999999999886 5677788899999966 33 45577777779999986 2 999866 899999
Q ss_pred HHHHHHHHHHHhhh
Q 013839 411 YLANAIHEVTRSEQ 424 (435)
Q Consensus 411 ~~~~~l~~~l~~~~ 424 (435)
+++++|++++++..
T Consensus 428 ~~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 428 EAVRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999986543
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=336.02 Aligned_cols=347 Identities=16% Similarity=0.062 Sum_probs=265.6
Q ss_pred CCCeeeeecceecCCCCCcccc-hHHHHHH---HHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVL-QCVREAE---AKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~-~~~~~~~---~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.+..|||+.|.| +.. ..|. +.+.++. ..+.. ....+|++..|.++||+++++++ +. ++++|+ +
T Consensus 32 ~~~~i~~~~G~p-~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~~-----~~~~i~--~ 100 (427)
T 3ppl_A 32 KNLKLDLTRGKP-SSE--QLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL-GV-----PVEQVL--A 100 (427)
T ss_dssp TCCCEECCCCSC-CHH--HHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH-TS-----CGGGEE--E
T ss_pred CCceEecCCCCC-ChH--HCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh-CC-----CcceEE--E
Confidence 457899999997 322 2221 1233333 22221 23567999999999999999998 32 267888 9
Q ss_pred cCCchhHHH--HHHHHHHHhC--C----------CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHH
Q 013839 123 ALSGTGACR--LFAEFQRRFH--P----------ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 123 t~gg~~a~~--~~~~~~~~~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
|+|+++++. ++ +..++. | ||+|++++|+|..+...++..|++++.+|+. ++ ++|++.|+++
T Consensus 101 t~G~~~al~~~~~--~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~d~~~l~~~ 175 (427)
T 3ppl_A 101 GDASSLNIMFDVI--SWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMN-ED--GPDMDAVEEL 175 (427)
T ss_dssp CSSCHHHHHHHHH--HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEE-TT--EECHHHHHHH
T ss_pred eCCcHHHHHHHHH--HHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCC-CC--CCCHHHHHHH
Confidence 999999994 55 444555 5 9999999999999999999999999999984 43 5999999999
Q ss_pred hhcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCceeeeeccCCCccCCCCcccHHHHHHh---hhcCCeEE
Q 013839 189 IKNAPDSSFFLL-HPSAHNPTGVDPTEEQWREISYQF-KVKGHFPFFDMAYQGFASGDLDKDAQAIRIF---LEDEHLIG 263 (435)
Q Consensus 189 i~~~~~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i 263 (435)
+.. +++++++ +++||||||.+++.+++++|+++| ++||+++|+||+|.++.+++......++..+ .+..++++
T Consensus 176 l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (427)
T 3ppl_A 176 VKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFW 253 (427)
T ss_dssp TTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEE
T ss_pred Hhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEE
Confidence 842 4677776 458999999999999999999999 9999999999999997765421111122222 23567899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++||||. +++|+|+||+++ +++ +++.+.........+++.+.|.++..++.+.. .+.+++++.++.++
T Consensus 254 ~~~S~SK~-~~~G~r~G~~~~---~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~ 322 (427)
T 3ppl_A 254 AFTSTSKI-TLAGAGVSFFLT---SAE----NRKWYTGHAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRKHAASLA 322 (427)
T ss_dssp EEEESTTT-SCTTSSCEEEEC---CHH----HHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHHHHHHHH
T ss_pred EEechhhc-cCcCccEEEEEc---CHH----HHHHHHHHhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHHHHHHHH
Confidence 99999999 679999999964 888 88888887776778899999999999998721 24466778888888
Q ss_pred HHHHHHHHHHHhh-CCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------------cEEeccCC
Q 013839 344 RKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------------RISMAGVT 405 (435)
Q Consensus 344 ~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------------Ris~~~~~ 405 (435)
++++.+.+.|.+. +.-..+.+..+++|+|+|+.+ +.+.+.++++++||.+.||| ||+++..+
T Consensus 323 ~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~ 402 (427)
T 3ppl_A 323 PKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPP 402 (427)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSC
T ss_pred HHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCC
Confidence 8888888777542 210124566788999999976 35556556678999999831 99997667
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
++++++++++|++++++..
T Consensus 403 ~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 403 VEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=328.91 Aligned_cols=366 Identities=14% Similarity=0.102 Sum_probs=275.4
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
.+++.......+. ..+++.. ++++.|+|+.|.+... ..+.++...+.+...+... ...|++..|.+++|+++++++
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~-~g~~~i~l~~~~~~~~-~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l 91 (406)
T 1xi9_A 16 ALSVEYAIRDVVL-PARELEK-KGIKVIRLNIGDPVKF-DFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVERE 91 (406)
T ss_dssp HHTCCC--------CHHHHHH-TTCCCEECCCCCGGGT-TCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHH
T ss_pred HhcCChhHHHHHH-HHHHHHH-cCCCEEEecCCCCCcC-CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHH
Confidence 3444444434455 5555544 4678999999996210 1233344444444444433 346988889999999999998
Q ss_pred cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhH
Q 013839 106 YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 106 ~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 185 (435)
....+.+.+++++. +++||++|+.++ +..++.+||+|++++|+|.++...++..|++++.++..+++++.+|++.|
T Consensus 92 ~~~~g~~~~~~~v~--~t~g~~~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 167 (406)
T 1xi9_A 92 KRKNGVDITPDDVR--VTAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDI 167 (406)
T ss_dssp HHHHCCCCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHH
T ss_pred HHhcCCCCCHHHEE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHH
Confidence 43212123367888 999999999998 66668899999999999999999999999999999984324677899999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe-EEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL-IGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 264 (435)
++.++ ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+ + .++ +++
T Consensus 168 ~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~-~-~~~~~i~ 239 (406)
T 1xi9_A 168 RKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE---HISPGSL-T-KDVPVIV 239 (406)
T ss_dssp HHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC---CCCHHHH-C-SSSCEEE
T ss_pred HHhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHc-C-CCceEEE
Confidence 99997 5688999999999999999999999999999999999999999999887421 1233333 2 567 999
Q ss_pred EecccccccccCCcccEEEEEecCh----hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDS----KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++|+||.++++|+|+||+++ +.++ + +++.+....... .+++.+.|.++..+|.... +.+++.++
T Consensus 240 ~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~----l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~------~~~~~~~~ 307 (406)
T 1xi9_A 240 MNGLSKVYFATGWRLGYMYF-VDPENKLSE----VREAIDRLARIR-LCPNTPAQFAAIAGLTGPM------DYLKEYMK 307 (406)
T ss_dssp EEESTTTTCCGGGCCEEEEE-ECTTCTTHH----HHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCC------HHHHHHHH
T ss_pred EeccccccCCCccEEEEEEE-ecCchhHHH----HHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCc------HHHHHHHH
Confidence 99999999999999999961 1277 7 777777655544 6788889999988885332 44778889
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC------CCHHH-HHHHhhhccEEEeCC--------C--cEEecc
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG------LTPYQ-VDRLAKEFHIYMTQD--------G--RISMAG 403 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~------~~~~~-~~~ll~~~gI~i~pg--------g--Ris~~~ 403 (435)
+++++++.+.+.|++++ ++.+..+++|+|+|+. .+.+. ...+++++||.+.|| + ||+++
T Consensus 308 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~- 383 (406)
T 1xi9_A 308 KLKERRDYIYKRLNEIP---GISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL- 383 (406)
T ss_dssp HHHHHHHHHHHHHHTST---TEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-
T ss_pred HHHHHHHHHHHHHHhCC---CCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-
Confidence 99999999999998873 2566677889998863 34444 456655789999875 2 99998
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 013839 404 VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++++++++++|++++++.
T Consensus 384 ~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 384 PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp SCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=328.90 Aligned_cols=337 Identities=15% Similarity=0.135 Sum_probs=263.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
++++.|||+.|.+ +. ..++.+.+.+.+.+..+....|++..|.+++|+++++++....+.+.+++ +|. +++|+
T Consensus 23 ~g~~~idl~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~--~~~g~ 96 (376)
T 2dou_A 23 RGVGLIDLSIGST-DL---PPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREAL--ALIGS 96 (376)
T ss_dssp TTCCCEECSSCCC-CC---CCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEE--EESSH
T ss_pred cCCCEEeccCCCC-CC---CCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEE--EcCCc
Confidence 5678999999996 32 23334444334444333356688877999999999999832111112244 888 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++|+.++ +..++.+||+|+++.|+|.++...++..|++++.+|. ++++.+|++++++++. ++++++++++|||
T Consensus 97 ~~a~~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~---~~~~~v~l~~p~n 169 (376)
T 2dou_A 97 QEGLAHL--LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVW---REAKVLLLNYPNN 169 (376)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHH---HHEEEEEECSSCT
T ss_pred HHHHHHH--HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhc---cCceEEEECCCCC
Confidence 9999988 6667789999999999999999999999999999987 4566789999999987 5689999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++....+..+++++++|+||.+|++|+|+||+++
T Consensus 170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 244 (376)
T 2dou_A 170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE---APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG-- 244 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC---CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE--
T ss_pred CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCcEEEEecchhhcCChhheeEEEec--
Confidence 999999999999999999999999999999999887531 112222223346789999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+.+.+.|.++..+|.... +++++.+++++++++.+.+.|+++ +.+..
T Consensus 245 -~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~ 308 (376)
T 2dou_A 245 -SEE----ALARLERVKGVIDFNQYAGVLRMGVEALKTPK------EVVRGYARVYRERALGMAEALKGV-----LSLLP 308 (376)
T ss_dssp -CHH----HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHTTT-----SEECC
T ss_pred -CHH----HHHHHHHHHHhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHh-----cCccC
Confidence 888 77777776655556788999999999997632 667888899999999999999775 34566
Q ss_pred cCcceeEecCC----CHH-HHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 367 ~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+++|+|+|+.+ +.+ +...+++ +||.+.|| + ||+++. +++++++++++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 309 PRATMYLWGRLPEGVDDLEFGLRLVE-RGVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp CCBSSEEEEECCTTCCHHHHHHHHHH-TTEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 77899998855 333 4466654 59999875 2 999976 8889999999988754
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=333.50 Aligned_cols=363 Identities=12% Similarity=0.040 Sum_probs=275.6
Q ss_pred cccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHh
Q 013839 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
+++....+. .+....+... .++.|+|+.|.+ +. +.++.+.+.+.+.+... ....|++..|.++++++++++
T Consensus 17 ~~~~~~~~~-~~~~~~~~~~--~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~ 89 (429)
T 1yiz_A 17 KRYQGSTKS-VWVEYIQLAA--QYKPLNLGQGFP-DY---HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKL 89 (429)
T ss_dssp SSCCCCTTC-HHHHHHHHHH--HHCCEECCSSSC-SS---CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHH
T ss_pred HHhhhCCch-HHHHHHHHhc--cCCEEEecCCCC-CC---CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHH
Confidence 444444443 3343333322 357899999986 32 33334444444444331 245798888999999999999
Q ss_pred HcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-------
Q 013839 105 VYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD------- 176 (435)
Q Consensus 105 l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~------- 176 (435)
+....+.+..++ ++. +++||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++
T Consensus 90 l~~~~g~~~~~~~~v~--~~~g~~~a~~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 165 (429)
T 1yiz_A 90 YSQLVDRTINPMTEVL--VTVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISS 165 (429)
T ss_dssp HHHHHTSCCCTTTSEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEG
T ss_pred HHHHhCCCCCCcCCEE--EecChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccc
Confidence 832111122367 888 999999999988 66667899999999999999999999999999999884321
Q ss_pred -CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 177 -SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 177 -~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
++++|++.|++++. ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+
T Consensus 166 ~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~ 240 (429)
T 1yiz_A 166 ADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTL 240 (429)
T ss_dssp GGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGS
T ss_pred cCcccCHHHHHHHhc---cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhc
Confidence 57899999999996 6789999999999999999999999999999999999999999999887542 11223223
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC-----hhhHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD-----PNLKSL 330 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-----~~l~~~ 330 (435)
.+..++++++.|+||.+|++|+|+||+++ +++ +++.+.........+.+.+.|.++..+|.. ..
T Consensus 241 ~~~~~~~~~~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~---- 309 (429)
T 1yiz_A 241 PGMWERTITIGSAGKTFSLTGWKIGWAYG---PEA----LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS---- 309 (429)
T ss_dssp TTTGGGEEEEEEHHHHHTCGGGCCEEEES---CHH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS----
T ss_pred cCCcCceEEEecchhccCCCCcceEEEEe---CHH----HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccc----
Confidence 22346899999999999999999999963 777 777777765555677889999988888865 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------------H-HHHHHHhhhccEEE
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------------P-YQVDRLAKEFHIYM 393 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------------~-~~~~~ll~~~gI~i 393 (435)
+.+++++.+++++++++.+.+.|++++ +.+..+++|+|+|+.+. . +++..+++++||.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v 385 (429)
T 1yiz_A 310 PECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQG 385 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEE
Confidence 125678888999999999999999886 45667788999998542 2 34465666789999
Q ss_pred eCC-------------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 394 TQD-------------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 394 ~pg-------------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.|| + ||+++. +++++++++++|+++++
T Consensus 386 ~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 386 IPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKG 427 (429)
T ss_dssp BCGGGGSCGGGGGGTTTEEEEECCS-CHHHHHHHHHHHHHHSC
T ss_pred eCchHhCCCcccCCCCCeEEEEecC-CHHHHHHHHHHHHHhcc
Confidence 864 2 999986 88999999999988753
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=328.27 Aligned_cols=339 Identities=8% Similarity=0.027 Sum_probs=270.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++++.|||+.|.+ +. +.++.+.+.+...+..+ ...|++ .| +++|+++++++....+.+..++++. +|+||+
T Consensus 21 ~g~~~idl~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~--~t~g~~ 91 (377)
T 3fdb_A 21 YGQGVLPLWVAES-DF---STCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIF--PIPDVV 91 (377)
T ss_dssp SCTTSEECCSSCC-CS---CCCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEE--EESCHH
T ss_pred cCCCeeeecccCC-CC---CCCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEE--EeCChH
Confidence 5678999999984 22 34444444444454443 556988 77 8999999999853222223467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. + + +|+++|++++. ++++++++++||||
T Consensus 92 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~--~d~~~l~~~l~---~~~~~v~i~~p~np 162 (377)
T 3fdb_A 92 RGLYIA--IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDAT-G-G--INLHDVEKGFQ---AGARSILLCNPYNP 162 (377)
T ss_dssp HHHHHH--HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECT-T-S--CCHHHHHHHHH---TTCCEEEEESSBTT
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCC-C-C--CCHHHHHHHhc---cCCCEEEEeCCCCC
Confidence 999998 66678899999999999999999999999999999883 3 2 89999999998 56789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.+++ +....++..+.. .+++++++|+||.+|++|+|+||++ +.
T Consensus 163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~--~~ 238 (377)
T 3fdb_A 163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDG-QHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQII--FS 238 (377)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEE--CC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCC-CCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEE--eC
Confidence 9999999999999999999999999999999988764 001122222211 4678999999999999999999986 33
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.++|.++..++.+.. +++++.+++++++++.+.+.|++. + ++.+..
T Consensus 239 ~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~ 305 (377)
T 3fdb_A 239 NPS----DAEHWQQLSPVIKDGASTLGLIAAEAAYRYGT------DFLNQEVAYLKNNHDFLLHEIPKRIP---GAKITP 305 (377)
T ss_dssp SHH----HHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHST---TCEECC
T ss_pred CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCC---CceEec
Confidence 677 77777776656667899999999888887532 667888999999999999999884 3 267788
Q ss_pred cCcceeEecCC-----CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++++++.|+.+ +.+++..+++++||.+.||. ||+++. +++++++++++|++++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 306 MQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp CSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 89999988854 34567778777799999762 999986 889999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=329.30 Aligned_cols=355 Identities=14% Similarity=0.134 Sum_probs=268.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcC------CCCccccCCCeeeEec
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYG------KDSDVVKEGRSAGVQA 123 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~------~~~~~~~~~~v~~~~t 123 (435)
++.|+|+.|.|...+..+.++.+.+.+...+.......|++..|.+++|+++++++.. ..+.++++++|+ ++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~--~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV--LC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE--EE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE--Ee
Confidence 5789999999721122244444444444444443345798888999999999999951 233334577888 99
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+|+++|+.++ +..++.+||+|++++|+|.++...++..|++++.+++.+++++.+|+++|++.+. ++++++++++
T Consensus 111 ~g~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~ 185 (416)
T 1bw0_A 111 SGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTN 185 (416)
T ss_dssp SHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEES
T ss_pred CChHHHHHHH--HHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEeC
Confidence 9999999988 6666889999999999999999999999999999988433357899999999987 5678999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc--cHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK--DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
|+||||.+++.+++++|+++|++||+++|+||+|.++.+++... ...++..+ +...++++++|+||.++++|+|+||
T Consensus 186 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~Glr~G~ 264 (416)
T 1bw0_A 186 PSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPRVILGGTAKNLVVPGWRLGW 264 (416)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCEEEEEESTTTTSCGGGCCEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcEEEEecchhhCCCCCceEEE
Confidence 99999999999999999999999999999999999988754200 11122222 2234689999999999999999999
Q ss_pred EEEEecCh-hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 282 LSILCVDS-KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
+++ +++ +..+.+...+++... ...+++.++|.++..+|.... .+++++.+++++++++.+.+.|++++
T Consensus 265 ~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~--- 333 (416)
T 1bw0_A 265 LLY--VDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP-----QEHLDQIVAKIEESAMYLYNHIGECI--- 333 (416)
T ss_dssp EEE--ECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHHHHHHHHTTST---
T ss_pred EEe--eCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 974 344 333335444444322 245788899999988887422 25677888899999999999998763
Q ss_pred CccccccCcceeEecCC---------CHH-HHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 361 NWEHITNQLGMFCFSGL---------TPY-QVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 361 ~~~~~~~~~g~~~~~~~---------~~~-~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++.+..+.+|+|+|+.+ +.+ ++..+++++||.+.|| + ||+++. +++++++++++|.+++++
T Consensus 334 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 334 GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR-PVEVYREAVERIKAFCQR 412 (416)
T ss_dssp TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 25566677888988643 333 4466666789999986 2 999964 888999999999999876
Q ss_pred hh
Q 013839 423 EQ 424 (435)
Q Consensus 423 ~~ 424 (435)
..
T Consensus 413 ~~ 414 (416)
T 1bw0_A 413 HA 414 (416)
T ss_dssp HB
T ss_pred hh
Confidence 43
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=323.87 Aligned_cols=345 Identities=14% Similarity=0.131 Sum_probs=267.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+++.|+|+.|.+ +. +.++.+.+.+ ..+..+ ...|++..|..++++++++++....+.+..++++. +++||+
T Consensus 41 ~g~~~i~l~~~~~-~~---~~~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~--~~~g~t 112 (409)
T 2gb3_A 41 RGVRIHHLNIGQP-DL---KTPEVFFERI-YENKPE-VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVL--VTNGGS 112 (409)
T ss_dssp TTCEEEECSSCCC-CS---CCCTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEE--EESHHH
T ss_pred cCCCEEeccCCCC-CC---CCCHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEE--EeCCHH
Confidence 4678999999996 32 3344444444 555433 45698888999999999999954333233467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.++..+++++.+ +++|++++. ++++++++++|+||
T Consensus 113 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~p~np 186 (409)
T 2gb3_A 113 EAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSNPCNP 186 (409)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECCCCCC
Confidence 999998 666688999999999999999999999999999998742234555 889988886 57899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|.++|++||+++|+||+|..+.+++. ..++ +.+..+++++++|+||.+|++|+|+||++ +
T Consensus 187 tG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~--~- 258 (409)
T 2gb3_A 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESDKVVVIDSVSKKFSACGARVGCLI--T- 258 (409)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEE--C-
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCCCEEEEecchhccCCccceEEEEE--E-
Confidence 99999999999999999999999999999998887531 1111 22234679999999999999999999996 4
Q ss_pred Ch-hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc-c
Q 013839 288 DS-KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH-I 365 (435)
Q Consensus 288 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~ 365 (435)
++ + +++.+........ +++.+.|.++..+|+... +++++.+++++++++.+.+.|++++ +.+ .
T Consensus 259 ~~~~----l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 323 (409)
T 2gb3_A 259 RNEE----LISHAMKLAQGRL-APPLLEQIGSVGLLNLDD------SFFDFVRETYRERVETVLKKLEEHG----LKRFT 323 (409)
T ss_dssp SCHH----HHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHHHHHHHHHHHHTT----CCCBC
T ss_pred CcHH----HHHHHHHHHhccC-CCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHcC----ceeee
Confidence 55 7 7777776655444 788999999989996532 5678888999999999999999875 445 5
Q ss_pred ccCcceeEecCC---CHHH-HHHHhhh-----ccEEEeCC-----------C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 366 TNQLGMFCFSGL---TPYQ-VDRLAKE-----FHIYMTQD-----------G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 366 ~~~~g~~~~~~~---~~~~-~~~ll~~-----~gI~i~pg-----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++|+|+|+.+ +.+. ...++++ +||.+.|| + ||+++ .+++++++++++|++++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 324 KPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp CCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 678899999754 4444 4666554 49999864 2 99998 48899999999999999876
Q ss_pred hhhhcccc
Q 013839 424 QETAKILC 431 (435)
Q Consensus 424 ~~~~~~~~ 431 (435)
. .....|
T Consensus 403 ~-~~~~~~ 409 (409)
T 2gb3_A 403 C-SSRISC 409 (409)
T ss_dssp H-C-----
T ss_pred h-hcccCC
Confidence 5 444444
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=326.15 Aligned_cols=347 Identities=11% Similarity=0.048 Sum_probs=268.0
Q ss_pred CCchhhHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc
Q 013839 34 KDPINGVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV 112 (435)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 112 (435)
++.........+. ..+.++|||+.|.+ +. +.+ +.+.+++.+.... ...|++..|.+++|+++++++....+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~-~~---~~~-~~v~~a~~~~~~~-~~~y~~~~g~~~lr~~la~~l~~~~g~~ 79 (376)
T 3ezs_A 6 PYPFERLRALLKEITPKKRGLDLGIGEP-QF---ETP-KFIQDALKNHTHS-LNIYPKSAFEESLRAAQRGFFKRRFKIE 79 (376)
T ss_dssp CCHHHHHHHHHTTCCCSSCCCBCSSCCC-CS---CCC-HHHHHHHHTTGGG-GGSCCCTTCCHHHHHHHHHHHHHHHSCC
T ss_pred cchHHHHHHHHHhhhccCCEEEeCCCCC-CC---CCC-HHHHHHHHHhhhh-cCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3444444444432 11238999999995 32 333 4444444444333 5679999999999999999983222222
Q ss_pred ccCCCeeeEecCCchhHHHHHHHHHHHhCC--CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh
Q 013839 113 VKEGRSAGVQALSGTGACRLFAEFQRRFHP--ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK 190 (435)
Q Consensus 113 ~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~ 190 (435)
+++++|. +|+|+++++.++ +..++.+ ||+|+++.|+|..+...++..|++++.++..+++ ++++ ++++.+.
T Consensus 80 ~~~~~i~--~t~g~~~al~~~--~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~~~ 152 (376)
T 3ezs_A 80 LKENELI--STLGSREVLFNF--PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEKEL 152 (376)
T ss_dssp CCGGGEE--EESSSHHHHHHH--HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHHHH
T ss_pred CCHHHEE--ECcCcHHHHHHH--HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhhhc
Confidence 3367888 999999999988 6667889 9999999999999999999999999999884322 4454 6666666
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-----cCCeEEEE
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-----DEHLIGCA 265 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~ 265 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..+.....+ ..++++++
T Consensus 153 ---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~ 226 (376)
T 3ezs_A 153 ---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVLVI 226 (376)
T ss_dssp ---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEEEE
T ss_pred ---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEEEE
Confidence 4678888999999999999999999999999999999999999999888642 112222222 46789999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
+|+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..++... +++++.+++++++
T Consensus 227 ~s~sK~~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~ 292 (376)
T 3ezs_A 227 HSLSKRSSAPGLRSGFIAG---DSR----LLEKYKAFRAYLGYTSANAIQKASEAAWLDD-------RHAEFFRNIYANN 292 (376)
T ss_dssp EESTTTTTCGGGCCEEEEE---CHH----HHHHHHHHHTTTCCCCCHHHHHHHHHHHHCS-------HHHHHHHHHHHHH
T ss_pred ecchhccCCccceeEEEee---CHH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCc-------HHHHHHHHHHHHH
Confidence 9999999999999999964 888 8888887766666788999999999998864 5578888999999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCC-CHH-HHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHH
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPY-QVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNY 411 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~-~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~ 411 (435)
++.+.+.|+ + +. .+.+|+|+|+.+ +.+ +...+++++||.+.|| + ||+++. +++++++
T Consensus 293 ~~~l~~~l~--~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~ 363 (376)
T 3ezs_A 293 LKLARKIFK--N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEK 363 (376)
T ss_dssp HHHHHHHST--T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHH
T ss_pred HHHHHHHhc--C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHH
Confidence 999998887 3 33 578899999987 344 4566655589999874 1 999976 8999999
Q ss_pred HHHHHHHHHHh
Q 013839 412 LANAIHEVTRS 422 (435)
Q Consensus 412 ~~~~l~~~l~~ 422 (435)
++++|++++++
T Consensus 364 ~l~~l~~~l~~ 374 (376)
T 3ezs_A 364 PLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=332.55 Aligned_cols=352 Identities=16% Similarity=0.155 Sum_probs=268.6
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHH-hcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccCCCeeeEecC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGS--EFLESISASVSTKMVEESVKLVYGKDSDV-VKEGRSAGVQAL 124 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~~v~~~~t~ 124 (435)
+++.|||+.|.| +.. ..+.+.+.+++.. +... ....|++..|.+++|+++++++....+.+ ..+++|. +++
T Consensus 42 ~~~~idl~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~--~t~ 116 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPE--TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLI--FTV 116 (425)
T ss_dssp STTCEECCCCSC-CGG--GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEE--EEE
T ss_pred CCCceeCCCCCC-Ccc--cCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEE--Eec
Confidence 568999999986 322 2233444444333 3221 13569888899999999999983211111 2367888 999
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-----CCCcEEE
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-----PDSSFFL 199 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-----~~~~~~v 199 (435)
|+++|+.++ +.+++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|++.|++++++. ..+++++
T Consensus 117 G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~--~~d~~~l~~~l~~~~~~~~~~~~~~v 191 (425)
T 1vp4_A 117 GSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLE-DD--GMDLNVLERKLSEFDKNGKIKQVKFI 191 (425)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred cHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC-CC--CCCHHHHHHHHHhhhhcccCCCceEE
Confidence 999999888 66678899999999999999999999999999999983 33 59999999998731 1257787
Q ss_pred -EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 200 -LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 200 -~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +..+++++++|+||.++ +|+|
T Consensus 192 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r 267 (425)
T 1vp4_A 192 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERVVLLNTFSKVLA-PGLR 267 (425)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTEEEEEESTTTTC-GGGC
T ss_pred EECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCEEEEeccccccc-cccc
Confidence 5899999999999999999999999999999999999999887542 11233333 23467899999999999 9999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||+++ +++ +++.+.........+.+.++|.++..+|.... +.+++++.+++++++++.+.+.|++..
T Consensus 268 ~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~- 335 (425)
T 1vp4_A 268 IGMVAG---SKE----FIRKIVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKPTIELYRRKRTVMLNALEEYF- 335 (425)
T ss_dssp EEEEEC---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eEEEee---CHH----HHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999964 777 77777766555556778999999998887532 346778889999999999999998761
Q ss_pred CC--CccccccCcceeEecCC----CH-HHHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHH
Q 013839 359 SL--NWEHITNQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 359 ~~--~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+. ++.+..+.+|+|+|+.+ +. ++.+.+++ +||.+.|| + ||+++..+++++++++++|+++
T Consensus 336 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 336 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 414 (425)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHH-CCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 11 25566678899999855 23 34566654 59999874 2 9999765789999999999999
Q ss_pred HHhhhhhh
Q 013839 420 TRSEQETA 427 (435)
Q Consensus 420 l~~~~~~~ 427 (435)
+++...+.
T Consensus 415 l~~~~~~~ 422 (425)
T 1vp4_A 415 VLEYGKEK 422 (425)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhc
Confidence 98766443
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=328.43 Aligned_cols=358 Identities=13% Similarity=0.040 Sum_probs=266.6
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CC-CCCCCCCCcccHHHHHHHHHhHcCCCCcc
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GS-EFLESISASVSTKMVEESVKLVYGKDSDV 112 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 112 (435)
.++....++.. . ..+|+|+.|.| +...++.++...+.+..++. .+ ...+|++..|.++||+++++++ +.
T Consensus 20 ~~~~~~~~l~~-~-~~~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~~---- 91 (422)
T 3d6k_A 20 EVTAKYAELKA-K-NLSLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL-GL---- 91 (422)
T ss_dssp HHHHHHHHHHH-T-TCCEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH-TC----
T ss_pred HHHHHHHHHhc-c-CCeEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh-CC----
Confidence 45555555543 2 35899999996 31111333333332222321 21 3567999999999999999998 32
Q ss_pred ccCCCeeeEecCCchhHH--HHHHHHHHHhCC------------CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC
Q 013839 113 VKEGRSAGVQALSGTGAC--RLFAEFQRRFHP------------ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK 178 (435)
Q Consensus 113 ~~~~~v~~~~t~gg~~a~--~~~~~~~~~~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 178 (435)
++++|+ +|+|+++++ .++ +..+..+ ||+|++++|+|.++...++..|++++.+|+. ++
T Consensus 92 -~~~~i~--~t~G~~~al~l~~~--~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~-- 163 (422)
T 3d6k_A 92 -PADLVV--AQDGSSLNIMFDLI--SWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMT-DE-- 163 (422)
T ss_dssp -CGGGEE--ECSSCHHHHHHHHH--HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-TT--
T ss_pred -ChhHEE--EecchHHHHHHHHH--HHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCC-CC--
Confidence 267888 899999987 444 3333444 3589999999999999999999999999983 43
Q ss_pred CcChHhHHHHhhcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCceeeeeccCCC--ccCCCCcccHHHHHH
Q 013839 179 SLDFAALMDDIKNAPDSSFFLL-HPSAHNPTGVDPTEEQWREISYQFK-VKGHFPFFDMAYQG--FASGDLDKDAQAIRI 254 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~vi~Deay~~--~~~~~~~~~~~~~~~ 254 (435)
++|++.|++.+++ .++++++ +++||||||.+++.+++++|+++|+ +|++++|+||+|.. +.+++ ....++..
T Consensus 164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~ 239 (422)
T 3d6k_A 164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE 239 (422)
T ss_dssp EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence 5999999999962 2577777 7999999999999999999999999 99999999999976 44332 11112222
Q ss_pred h---hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 255 F---LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 255 ~---~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
+ .+..+++++++||||. +++|+|+||+++ +++ +++.+.+.......+++.++|.++..+|.+. ..+
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~---~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~ 308 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFAS---SKE----NIEWYASHANVRGIGPNKLNQLAHAQFFGDV---AGL 308 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEEC---CHH----HHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH---HHH
T ss_pred HhhccCCCCcEEEEcChhhh-cCcccceEEEEe---CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc---chH
Confidence 1 2446789999999999 679999999964 788 8888887766666788999999999999872 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCC-----------
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQD----------- 396 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg----------- 396 (435)
.+++++.++.++++++.+.+.|.+. +....+.+..+++|+|+|+.+ +.+.+..+++++||.+.|+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~ 388 (422)
T 3d6k_A 309 KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPN 388 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCC
Confidence 5678888888999998888888652 100014556778999999866 3566666778899999982
Q ss_pred -C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 -G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 -g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ |||++..+++++++++++|++++++..
T Consensus 389 ~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 389 NENIRLAPSLPPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp SCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 999874488999999999999987653
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=320.47 Aligned_cols=329 Identities=16% Similarity=0.157 Sum_probs=260.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+++.|+|+.|.+ +. ..++...+.+.+.+..+ ...|++..|.+++|+++++++....+.+..++++. +++||+
T Consensus 27 ~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~--~~~g~~ 99 (370)
T 2z61_A 27 EGKKVIHLEIGEP-DF---NTPKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELYKDKYKADIIPDNII--ITGGSS 99 (370)
T ss_dssp TTCCCEECCCCSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEE--EESSHH
T ss_pred cCCCEEEccCCCC-CC---CCCHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEE--ECCChH
Confidence 4578999999996 32 23344444444444433 45698888999999999999943222223467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.++ +|+++|++.++ ++++++++++|+||
T Consensus 100 ~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~---~~~~~v~~~~p~np 166 (370)
T 2z61_A 100 LGLFFA--LSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALS---DKTKAIIINSPSNP 166 (370)
T ss_dssp HHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCC---SSEEEEEEESSCTT
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhcc---cCceEEEEcCCCCC
Confidence 999998 666688999999999999999999999999888775 58999999987 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+ |.++|++||+++|+||+|..+.+++. ..++..+.+..+++++++|+||.+|++|+|+||+++
T Consensus 167 tG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--- 236 (370)
T 2z61_A 167 LGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS--- 236 (370)
T ss_dssp TCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEEC---
T ss_pred cCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecChhccCCccceEEEEEE---
Confidence 99999987 89999999999999999999887531 112323323457899999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD-PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.+.|.++..+|+. . .+++++.+++++++++.+.+.|++++ +.+..
T Consensus 237 ~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 302 (370)
T 2z61_A 237 NDE----IIEAILKLQQNLFISAPTISQYAALKAFEKET------EREINSMIKEFDRRRRLVLKYVKDFG----WEVNN 302 (370)
T ss_dssp CHH----HHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHHHHHHHHHHHHHHHHHTT----CBCCC
T ss_pred CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHHHHHHHHHHHHHHHHHcC----CeecC
Confidence 777 777777766555668889999988888864 2 26678888999999999999999875 45667
Q ss_pred cCcceeEecCC--CHHH-HHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL--TPYQ-VDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 367 ~~~g~~~~~~~--~~~~-~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+++|+|+|+.+ +.+. ...+++++||.+.|| + ||+++. +++++++++++|+++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 303 PIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLN 369 (370)
T ss_dssp CCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred CCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 78899999876 4444 466655789999875 2 999985 88999999999988764
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=329.70 Aligned_cols=336 Identities=15% Similarity=0.183 Sum_probs=258.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---C-CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---G-SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
+++++|+|++|++ +. +.++.+++++.+.+. . .....|++..|.++|++++++++.. ...+.+++|+ ++
T Consensus 54 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~--~t 125 (432)
T 3ei9_A 54 PDAQVISLGIGDT-TE---PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVF--VS 125 (432)
T ss_dssp TTCCCEECSSCCC-CS---CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEE--EE
T ss_pred CCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEE--EC
Confidence 4568999999996 44 344444444444333 1 2245798889999999999999852 2223477888 99
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC------------CeeeeeecCCCCCCcChHhHHHHhhc
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI------------PERTYHYYDPDSKSLDFAALMDDIKN 191 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~~~~~~~d~e~l~~~i~~ 191 (435)
+|+++++.++ .+++.+||+|++++|+|.++...++..|. +++.+++.++.++..|++. .
T Consensus 126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~- 196 (432)
T 3ei9_A 126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V- 196 (432)
T ss_dssp SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C-
T ss_pred CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C-
Confidence 9999998764 55678999999999999999998887774 6777777433334445433 1
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++|+||.
T Consensus 197 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~ 271 (432)
T 3ei9_A 197 --GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNY 271 (432)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHH
T ss_pred --CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhc
Confidence 4678888899999999999999999999999999999999999999887632 22333333345679999999999
Q ss_pred ccccCCcccEEEEEecChhHHHHH--------HHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAI--------RSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+|++|+|+||+++ +++ + ++.+.+.....+.+++.++|.++.+++.+.. .+++++.+++++
T Consensus 272 ~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~ 339 (432)
T 3ei9_A 272 AGFTGVRLGWTVI---PKK----LLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG-----LEAMHKVIGFYK 339 (432)
T ss_dssp HCTTTTCCEEEEC---CTT----CBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH-----HHHHHHHHHHHH
T ss_pred cCCcccceEEEEE---ChH----HhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc-----HHHHHHHHHHHH
Confidence 9999999999964 666 5 5666665555667789999999988887432 256788899999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC---C-HHHHHHHhhhccEEEeCC--------C--cEEeccCCCCcH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---T-PYQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNV 409 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i 409 (435)
++++.+.+.|+++| +.+..+.+++|+|+.+ + .+++..+++++||.+.|| + ||+++. +++++
T Consensus 340 ~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l 414 (432)
T 3ei9_A 340 ENTNIIIDTFTSLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENI 414 (432)
T ss_dssp HHHHHHHHHHHHTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHH
T ss_pred HHHHHHHHHHHHCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHH
Confidence 99999999999886 4566777889999976 3 345677777789999986 1 999866 88999
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|++--+.
T Consensus 415 ~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 415 LEACRRFKQLYKH 427 (432)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999999876543
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=325.39 Aligned_cols=348 Identities=16% Similarity=0.207 Sum_probs=270.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC------------CCCCCCcccHHHHHHHHHhHcC--CCCccccC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF------------LESISASVSTKMVEESVKLVYG--KDSDVVKE 115 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~ 115 (435)
...|+|+.+. + +.+.+.+.+++........ ..|++..|.++||+++++++.. ....+.++
T Consensus 38 ~~~i~lg~~~----~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~ 111 (435)
T 3piu_A 38 NGIIQMGLAE----N--QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP 111 (435)
T ss_dssp TSBEECSSCC----C--CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred CCeEEecccc----c--cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH
Confidence 3577888876 2 3445566666665432111 4699999999999999999852 11222346
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhcC--
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKNA-- 192 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-- 192 (435)
++++ +++||++|+.++ +..++.+||+|+++.|+|.++...+. ..|++++.++..++.++.+|++.|++++.+.
T Consensus 112 ~~v~--~~~gg~~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 112 NHLV--LTAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp GGEE--EEEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred HHEE--EcCChHHHHHHH--HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 7888 999999999998 67778899999999999999988887 7899999999854445779999999998741
Q ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc---------CCeE
Q 013839 193 -PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED---------EHLI 262 (435)
Q Consensus 193 -~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~---------~~~~ 262 (435)
..+++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+... .+++
T Consensus 188 ~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-------CGGGGE
T ss_pred cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhccccccccccCCCCCE
Confidence 23689999999999999999999999999999999999999999999777642 22233233222 5788
Q ss_pred EEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 263 i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
++++|+||.+|++|+|+||++ +.+++ +.+.+++... +.+.+.+.|.++..++.+..+ ..+++++.++++
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~--~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 334 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIY--SNDDM----VVAAATKMSS--FGLVSSQTQHLLSAMLSDKKL---TKNYIAENHKRL 334 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEE--ESCHH----HHHHHHHHGG--GSCCCHHHHHHHHHHHHCHHH---HHHHHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEE--eCCHH----HHHHHHHHhh--cCCCCHHHHHHHHHHhcChHH---HHHHHHHHHHHH
Confidence 999999999999999999996 43566 6666665433 346778899999888876542 134667888999
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCH-----------HHHHHHhhhccEEEeCC--------C--cEEe
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTP-----------YQVDRLAKEFHIYMTQD--------G--RISM 401 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~ll~~~gI~i~pg--------g--Ris~ 401 (435)
+++++.+.+.|++++ +.+..+++|+|+|+.+.. +++..+++++||.+.|| + ||++
T Consensus 335 ~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 410 (435)
T 3piu_A 335 KQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCF 410 (435)
T ss_dssp HHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEEC
T ss_pred HHHHHHHHHHHHhcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEe
Confidence 999999999999886 567788888999986631 34566767679999985 1 9999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+..+++++++++++|++++++..
T Consensus 411 ~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 411 ANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCHHHHHHHHHHHHHHHHHHh
Confidence 76588999999999999987654
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=320.75 Aligned_cols=335 Identities=17% Similarity=0.144 Sum_probs=262.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
++.|+|+.|.+ +. +.++.+.+.+.+.+.. ...|++..|.+++|+++++++ +.+ ++++. +++||++|
T Consensus 25 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~-~~~-----~~~v~--~~~g~~~a 90 (381)
T 1v2d_A 25 LGAVNLGQGFP-SN---PPPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEF-AVE-----PESVV--VTSGATEA 90 (381)
T ss_dssp HTCEECCCCSC-SS---CCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHH-TSC-----GGGEE--EESSHHHH
T ss_pred CCeEEecCCCC-CC---CCCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhc-CCC-----hhhEE--EcCChHHH
Confidence 56899999986 33 3333344444444433 456988889999999999997 332 45777 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC-CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD-PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..++.+||+|++++|+|..+...++..|++++.++... ++++.+|+++|++++. ++++++++++|+|||
T Consensus 91 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~npt 165 (381)
T 1v2d_A 91 LYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNPT 165 (381)
T ss_dssp HHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTTT
T ss_pred HHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCCCCC
Confidence 9998 666678999999999999999999999999999998730 2457899999999886 578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++|++||+++|+||+|.++.++.. ..++..+ ..++++++.|+||.+|++|+|+||+++ +
T Consensus 166 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~---~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~---~ 237 (381)
T 1v2d_A 166 GLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRRLREF--APERTFTVGSAGKRLEATGYRVGWIVG---P 237 (381)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEEC---C
T ss_pred CCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHh--cCCCEEEEeechhhcCCcccceEEEEe---C
Confidence 9999999999999999999999999999998876321 1122222 346899999999999999999999964 7
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.........+++.+.|.++..+|.... +.+++++.+++++++++++.+.|++.+ +.+..++
T Consensus 238 ~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 305 (381)
T 1v2d_A 238 KE----FMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLRAMG----LRVYVPE 305 (381)
T ss_dssp TT----THHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHHHTT----CCEECCS
T ss_pred HH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHHHHHHHHHHHCC----CEecCCC
Confidence 77 77777665555566788899988888886431 125677888999999999999998876 4566778
Q ss_pred cceeEecCCCH-HHHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 369 LGMFCFSGLTP-YQVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 369 ~g~~~~~~~~~-~~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+|+|+|+.+.. + +..+++++||.+.|| + ||+++. +++++++++++|++++++..+
T Consensus 306 ~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 306 GTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp BSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-----
T ss_pred cceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhccc
Confidence 88999986632 3 666777899999874 2 999987 889999999999998876543
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=326.35 Aligned_cols=359 Identities=14% Similarity=0.031 Sum_probs=269.1
Q ss_pred hhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHH--HHhcCC-CCCCC-CCCcccHHHHHHHHHhHcCCCCccc
Q 013839 38 NGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAE--AKIAGS-EFLES-ISASVSTKMVEESVKLVYGKDSDVV 113 (435)
Q Consensus 38 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (435)
+....++. .....|||+.|.| +...++.++...+.+. ..+..+ ...+| ++..|.++||+++++++ +.
T Consensus 15 ~~~~~~~~--~~~~~i~l~~g~p-~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~-~~----- 85 (423)
T 3ez1_A 15 RQAYEAFK--ARGLNLNMQRGQP-ADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL-DV----- 85 (423)
T ss_dssp HHHHHHHH--HHTCCEESCCCCC-CHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT-TS-----
T ss_pred HHHHHHhh--cCCceEecCCCCC-ChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh-CC-----
Confidence 34444443 2357899999997 3111123323333221 222222 24679 88899999999999998 32
Q ss_pred cCCCeeeEecCCchhHHH--HHHHHHHHhC--C---------CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 114 KEGRSAGVQALSGTGACR--LFAEFQRRFH--P---------ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 114 ~~~~v~~~~t~gg~~a~~--~~~~~~~~~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
++++|+ +|+|+++++. ++ +..++. + ||+|+++.|+|.++...++..|++++.++.. ++ ++
T Consensus 86 ~~~~i~--~t~G~~~al~~~~~--~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~ 158 (423)
T 3ez1_A 86 KAENVL--VWNNSSLELQGLVL--TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQ-SD--GP 158 (423)
T ss_dssp CGGGEE--ECSSCHHHHHHHHH--HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-TT--EE
T ss_pred ChhhEE--EeCCcHHHHHHHHH--HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCC-CC--CC
Confidence 256888 9999999997 66 555666 7 5999999999999999999999999999984 33 69
Q ss_pred ChHhHHHHhhcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCceeeeeccCCCccCCC-Ccc---cHHHHHH
Q 013839 181 DFAALMDDIKNAPDSSFFLL-HPSAHNPTGVDPTEEQWREISYQF-KVKGHFPFFDMAYQGFASGD-LDK---DAQAIRI 254 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~vi~Deay~~~~~~~-~~~---~~~~~~~ 254 (435)
|++.|++++.+. +++++++ +++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ ... +...+..
T Consensus 159 d~~~l~~~l~~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 237 (423)
T 3ez1_A 159 DVDAVERLAGTD-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR 237 (423)
T ss_dssp CHHHHHHHHHSC-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHH
T ss_pred CHHHHHHHHhhC-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhh
Confidence 999999999532 5677775 579999999999999999999999 99999999999998655442 111 2222222
Q ss_pred hhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC--hhhHHHHH
Q 013839 255 FLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD--PNLKSLWI 332 (435)
Q Consensus 255 ~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~--~~l~~~~~ 332 (435)
..+..+++++++||||. +++|+|+||+++ +++ +++.+.........+++.+.|.++..++.+ .. +.
T Consensus 238 ~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~----~~ 305 (423)
T 3ez1_A 238 DAGYPDRAFVFASTSKI-TFAGAGLGFVAS---SED----NIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG----LE 305 (423)
T ss_dssp HHTCTTSEEEEEESTTT-SCSSSSCEEEEE---CHH----HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH----HH
T ss_pred ccCCCCeEEEEeCchhh-ccCCcceEEEEe---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch----HH
Confidence 23456889999999999 569999999975 888 888888877777788999999999998875 33 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCC-CccccccCcceeEecCC---CHHHHHHHhhhccEEEeC-C----------
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEK-LGSSL-NWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQ-D---------- 396 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~~-~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~p-g---------- 396 (435)
+++++.++.++++++.+.+.|.+ ++.-. .+.+..+++|+|+|+.+ +.+.+.++++++||.+.| |
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~ 385 (423)
T 3ez1_A 306 GLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPH 385 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCC
Confidence 66677777777777777777754 22101 24566788999999865 456676667889999998 2
Q ss_pred -C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 397 -G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 397 -g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+ ||+++..+++++++++++|++++++...
T Consensus 386 ~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 386 NRNLRLAPTRPPVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp SCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 9999755889999999999999987653
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=320.63 Aligned_cols=345 Identities=12% Similarity=0.112 Sum_probs=268.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|.+ +. +.++.+.+.+...+... ...|++. ..++++++++++....+.+..+++|. +++|++
T Consensus 25 ~g~~~i~~~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~--~~~g~~ 95 (391)
T 3dzz_A 25 LKEKELPMWIAEM-DF---KIAPEIMASMEEKLKVA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCV--FASGVV 95 (391)
T ss_dssp CCTTCEECCSSCC-SS---CCCHHHHHHHHHHHTTC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEE--EESCHH
T ss_pred cCCCceeccccCC-CC---CCCHHHHHHHHHHHhcC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEE--ECCCHH
Confidence 4568999999985 33 44444545444555443 5567765 68999999999843322223367888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++.++.+|+++|++++++ ++++++++++|+|
T Consensus 96 ~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~n 171 (391)
T 3dzz_A 96 PAISAM--VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHN 171 (391)
T ss_dssp HHHHHH--HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBT
T ss_pred HHHHHH--HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCC
Confidence 999988 66678899999999999999999999999999999873 133356999999999963 4688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+.+. ...++..+. ...++++++.|+||.+|++|+|+||++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~-- 247 (391)
T 3dzz_A 172 PIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAI-- 247 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEE--
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEE--
Confidence 999999999999999999999999999999998887641 122333322 124689999999999999999999996
Q ss_pred ecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcc
Q 013839 286 CVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWE 363 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 363 (435)
+++++ +++.+..... ....+++.+++.++..++.... +++++.+++++++++.+.+.|++ ++ ++.
T Consensus 248 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~ 314 (391)
T 3dzz_A 248 IPNPD----LRARAEESFFLAGIGEPNLLAIPAAIAAYEEGH------DWLRELKQVLRDNFAYAREFLAKEVP---EVK 314 (391)
T ss_dssp CCSHH----HHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCT---TSE
T ss_pred ECCHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCC---CcE
Confidence 43377 7777766543 3345788888888888886532 56788889999999999999988 43 256
Q ss_pred ccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 364 HITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 364 ~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+..++++++.|+.+ +.+.+ ..+++++||.+.||. |++++. +++++++++++|+++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 315 VLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp ECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred EeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 77888999988743 44444 555567999999862 999985 8899999999999998764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=320.70 Aligned_cols=346 Identities=16% Similarity=0.228 Sum_probs=263.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC-----------CCCCCCCCCcccHHHHHHHHHhHcCCCCcc--ccCC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-----------SEFLESISASVSTKMVEESVKLVYGKDSDV--VKEG 116 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~~ 116 (435)
...|+|+.++ + +.+.+.+.+++..... .....|+++.|.+++|+++++++....+.. +.++
T Consensus 36 ~~~i~l~~~~----~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~ 109 (428)
T 1iay_A 36 NGVIQMGLAE----N--QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE 109 (428)
T ss_dssp TSBEECSSCC----C--CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred Cceeeecccc----c--hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence 4688998776 2 2223355555553210 013569888899999999999984221111 3367
Q ss_pred CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhc---C
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKN---A 192 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~ 192 (435)
++. +++|+++++.++ +..++.+||+|+++.|+|..+...+. ..|++++.++...++++++|++++++++++ .
T Consensus 110 ~i~--~~~G~~~ai~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (428)
T 1iay_A 110 RVV--MAGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp SCE--EEEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred hEE--EccChHHHHHHH--HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence 888 999999999888 66678899999999999999877554 679999999874334678999999998864 2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-------CCeEEEE
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-------EHLIGCA 265 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~ 265 (435)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .++++++
T Consensus 186 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~ 263 (428)
T 1iay_A 186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEE
Confidence 23688999999999999999999999999999999999999999999877531 11122223222 4789999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
.|+||.+|++|+|+||++ +.+++ +++.+++... +.+.+.++|.++..+|.+..+ +.+++++.+++++++
T Consensus 264 ~s~sK~~g~~Glr~G~~~--~~~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 264 YSLSKDMGLPGFRVGIIY--SFNDD----VVNCARKMSS--FGLVSTQTQYFLAAMLSDEKF---VDNFLRESAMRLGKR 332 (428)
T ss_dssp EESTTTSSCGGGCEEEEE--ESCHH----HHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEE--eCCHH----HHHHHHHHHh--cccCCHHHHHHHHHHhcChHH---HHHHHHHHHHHHHHH
Confidence 999999999999999996 43567 7777766433 356888999999999987531 224677888999999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCCC----------H-HHHHHHhhhccEEEeCC--------C--cEEeccC
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------P-YQVDRLAKEFHIYMTQD--------G--RISMAGV 404 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~ 404 (435)
++.+.+.|++++ +.+.++++|+|+|+.+. . ++.+.+++++||.+.++ + ||+++..
T Consensus 333 ~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~ 408 (428)
T 1iay_A 333 HKHFTNGLEVVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANM 408 (428)
T ss_dssp HHHHHHHHHHTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSS
T ss_pred HHHHHHHHHhcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecC
Confidence 999999999886 45666778999998662 1 23466655569999875 2 9999745
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 013839 405 TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~ 422 (435)
+++++++++++|++++++
T Consensus 409 ~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 409 DDGTVDIALARIRRFVGV 426 (428)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 889999999999998864
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=317.46 Aligned_cols=341 Identities=15% Similarity=0.124 Sum_probs=262.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHH-HhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEA-KIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++.|+|+.|.| +.. ..+.+.+.+++. .+... ....|++..|..++|+++++++ +. ++++|. +++|
T Consensus 31 ~~~~i~l~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-g~-----~~~~v~--~~~g 99 (397)
T 2zyj_A 31 RPGILSFAGGLP-APE--LFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI-GV-----RPEEVL--ITTG 99 (397)
T ss_dssp STTCEEESSCCC-CGG--GCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH-TS-----CGGGEE--EESH
T ss_pred CCCceecCCCCC-Cch--hCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh-CC-----ChhhEE--Eecc
Confidence 467999999986 322 223334443333 33211 1356888889999999999999 32 256888 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEE-EeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL-LHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v-~~~~p 204 (435)
+++++.++ +.+++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|+++|++++++ .+++++ ++++|
T Consensus 100 ~~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~--~~d~~~l~~~l~~--~~~~~v~~~~~~ 172 (397)
T 2zyj_A 100 SQQALDLV--GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAG-EE--GPDLDALEEVLKR--ERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TT--EECHHHHHHHHHH--CCCSCEEECCBS
T ss_pred HHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcC-CC--CCCHHHHHHHHhh--cCCeEEEECCCC
Confidence 99999988 66667899999999999999999999999999999883 33 5999999999974 245665 68999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc--CCeEEEEecccccccccCCcccEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED--EHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
|||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+... .+++++++|+||.++ +|+|+||+
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 249 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFA 249 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCcccCCCeEEEEeccccccc-ccceeEEE
Confidence 99999999999999999999999999999999999887532 11223233211 157899999999999 99999999
Q ss_pred EEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 283 SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
++ +++ +++.+.........+.+.++|.++..+|.... + +++++.+++++++++.+.+.|++.. +.++
T Consensus 250 ~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~g~ 316 (397)
T 2zyj_A 250 VA---HPE----ALQKLVQAKQGADLHTPMLNQMLVHELLKEGF----S-ERLERVRRVYREKAQAMLHALDREV-PKEV 316 (397)
T ss_dssp EC---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHHHHHHHHHHHHHHHHHHS-CTTS
T ss_pred ec---CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHHHHHHHHHHHHHHHHHHC-CCCe
Confidence 64 777 77777765555556678999999999998653 3 5678888999999999999998751 1124
Q ss_pred cccccCcceeEecCC----CHHHH-HHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 363 EHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 363 ~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+..+.+|+|+|+.+ +.+.+ +.++ ++||.+.|| + ||+++..+++++++++++|++++++..
T Consensus 317 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 317 RYTRPKGGMFVWMELPKGLSAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EECCCSBSSEEEEECSTTCCHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCccEEEEEEcCCCCCHHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566678889999855 34444 5554 569999874 2 999976578999999999999987654
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=316.21 Aligned_cols=347 Identities=16% Similarity=0.171 Sum_probs=264.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHH-HhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEA-KIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++.+.|||+.|.| +.. ..+.+.+.+++. .+... ... |++..|.+++|+++++++....+.+.+++++. +|+
T Consensus 32 ~g~~~idl~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~--~t~ 105 (407)
T 2zc0_A 32 KGVKLISLAAGDP-DPE--LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIV--ITI 105 (407)
T ss_dssp SSCCCEECCSCCC-CTT--TSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEE--EES
T ss_pred CCCceEeCCCCCC-Cch--hCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEE--Eec
Confidence 3458999999986 332 223344444333 33221 235 88888999999999999932111112367888 999
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh----cCCCCcEEE-
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK----NAPDSSFFL- 199 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~----~~~~~~~~v- 199 (435)
||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|+++|++++. +. ++++++
T Consensus 106 g~t~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~--~~d~~~l~~~l~~~~~~~-~~~~~v~ 179 (407)
T 2zc0_A 106 GGTGALDLL--GRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVD-ND--GMRVDLLEEKIKELKAKG-QKVKLIY 179 (407)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccC-CC--CCCHHHHHHHHHhhhccc-CCceEEE
Confidence 999999998 66667899999999999999999999999999999883 33 599999999987 32 356776
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+ +..+++++++|+||.++ +|+|+
T Consensus 180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r~ 255 (407)
T 2zc0_A 180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGRVIVAGTLSKVLG-TGFRI 255 (407)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCCEEEEEESTTTTC-TTSCC
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCCEEEEcccccccC-CCcce
Confidence 6899999999999999999999999999999999999999887531 11223233 22357899999999999 99999
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWI-DEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
||+++ +++ +++.+.........+++.+.|.++..++.... +. +++++.+++++++++.+.+.|++...
T Consensus 256 G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 256 GWIIA---EGE----ILKKVLMQKQPIDFCAPAISQYIALEYLKRGY----FEKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp EEEEC---CHH----HHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTH----HHHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEec---CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC----chHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99964 777 77777776655556678899999989887642 33 55778888999999999999987521
Q ss_pred CCCccccccCcceeEecCC----CHH-HHHHHhhhccEEEeCC--------C----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD--------G----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg--------g----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++.+..+.+|+|+|+.+ +.+ +.+.+++++||.+.|| + ||+++..+++++++++++|+++++
T Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 325 --NAEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp --TSCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHH
T ss_pred --CCEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 14555677888998865 344 4466655449999875 1 999976578999999999999987
Q ss_pred hh
Q 013839 422 SE 423 (435)
Q Consensus 422 ~~ 423 (435)
+.
T Consensus 403 ~~ 404 (407)
T 2zc0_A 403 EK 404 (407)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=321.78 Aligned_cols=360 Identities=14% Similarity=0.080 Sum_probs=258.8
Q ss_pred CCchhhHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-----CCCCCCCCcccHHHHHHHHHhHcC
Q 013839 34 KDPINGVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-----EFLESISASVSTKMVEESVKLVYG 107 (435)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~l~~ 107 (435)
+..+...++++.+ ..++++|+|+.|.| +. .+.+.+.+++++.++... ...+|++..|.++||+++++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 90 (417)
T 3g7q_A 14 HSGITRLMEDLNDGLRTPGAIMLGGGNP-AH--IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRE 90 (417)
T ss_dssp --CHHHHHHHHHC-----CCEECSCCCC-CC--CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhccCCCceEecCcCC-CC--CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHH
Confidence 3445566666544 34579999999997 22 244456666666655321 124699999999999999999843
Q ss_pred CCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC-----EEEEc-CCCChhhHHHHhh------CCCCeeeeeecCC
Q 013839 108 KDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES-----HIYFP-DPTWSNHHNIWRD------AQIPERTYHYYDP 175 (435)
Q Consensus 108 ~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd-----~Vlv~-~p~y~~~~~~~~~------~g~~~~~v~~~~~ 175 (435)
..+..+.+++|+ +|+|+++|+.++ +..++.+|| +|+++ +|+|.++...+.. .+..+..++. +.
T Consensus 91 ~~g~~~~~~~i~--~t~G~t~al~~~--~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (417)
T 3g7q_A 91 TLGWDIEPQNIA--LTNGSQSAFFYL--FNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPE-GQ 165 (417)
T ss_dssp HHCCCCCGGGEE--EESCHHHHHHHH--HHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGG-GE
T ss_pred HhCCCCCcccEE--EeCCcHHHHHHH--HHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCC-cc
Confidence 222234478988 999999999998 666778887 89997 9999998765432 2222333332 11
Q ss_pred CCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 176 DSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 176 ~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
.++.+|++.++ +. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.... . .... .
T Consensus 166 ~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~--~~~~--~ 235 (417)
T 3g7q_A 166 FKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-I--FSEA--R 235 (417)
T ss_dssp EEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-B--CSCC--C
T ss_pred cccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-c--cccc--c
Confidence 24678999987 44 678999999999999999999999999999999999999999997543211 0 0000 1
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
.+..+++++++|+|| ++++|+|+||+++ +++ +++.+.........+++.++|.++..++.+.. +.++.
T Consensus 236 ~~~~~~~i~~~s~sK-~~~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~ 303 (417)
T 3g7q_A 236 PLWNPNIILCMSLSK-LGLPGSRCGIIIA---NDK----TITAIANMNGIISLAPGGMGPAMMCEMIKRND----LLRLS 303 (417)
T ss_dssp CCCCTTEEEEEESGG-GTCTTSCCEEEEC---CHH----HHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTC----HHHHH
T ss_pred cCCCCCEEEEEechh-ccCCCcceEEEEe---CHH----HHHHHHHhhcceeeCCCcHHHHHHHHHHcCcc----hHHHH
Confidence 133578999999999 6889999999963 888 88888887766677889999999999998765 33444
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeCC-------------
Q 013839 336 KI-MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD------------- 396 (435)
Q Consensus 336 ~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg------------- 396 (435)
.+ .+++++++++.+.+.|++.-....+.+..+++|+|+|+.+ +.+.+...+.++||.+.||
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~ 383 (417)
T 3g7q_A 304 ETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPH 383 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCcccccc
Confidence 44 6778888888888888764111125667788999999843 4555544457789999874
Q ss_pred --C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 --G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 --g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ |||++. +++++++++++|++++++..
T Consensus 384 ~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 384 THQCMRMNYVP-EPDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp GGGEEEEESCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecC-CHHHHHHHHHHHHHHHHHHH
Confidence 1 999987 89999999999999997654
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=308.92 Aligned_cols=324 Identities=10% Similarity=0.039 Sum_probs=257.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
.+++|+|+.|.+ +. +.++.+++.+...+. . ...|++..+ +++|+++++++ +.. ++++. +++|+++
T Consensus 29 ~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~-~-~~~y~~~~~-~~lr~~la~~~-~~~-----~~~v~--~~~g~~~ 93 (365)
T 3get_A 29 VKEVIKLASNEN-PF---GTPPKAIECLRQNAN-K-AHLYPDDSM-IELKSTLAQKY-KVQ-----NENII--IGAGSDQ 93 (365)
T ss_dssp CSCCEECSSCCC-TT---CSCHHHHHHHHHHGG-G-TTSCCCTTC-HHHHHHHHHHH-TCC-----GGGEE--EESSHHH
T ss_pred CCceEEecCCCC-CC---CCCHHHHHHHHHHHH-h-hccCCCCCh-HHHHHHHHHHh-CCC-----cceEE--ECCCHHH
Confidence 378999999984 22 334444444444443 3 556888766 89999999998 322 56888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++++ +|+++++++++ ++++++++++|||||
T Consensus 94 a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~---~~~~~v~~~~p~npt 166 (365)
T 3get_A 94 VIEFA--IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK---DEIKLIFLCLPNNPL 166 (365)
T ss_dssp HHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT---TTEEEEEEESSCTTT
T ss_pred HHHHH--HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC---CCCCEEEEcCCCCCC
Confidence 99998 6667889999999999999999999999999999987 45567 99999999997 678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC--CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS--GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|.+++.+++++|+++| ++|+++|+|++|.++.+ .+. ...+.....+..+++++++|+||.+|++|+|+||+++
T Consensus 167 G~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 241 (365)
T 3get_A 167 GECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-- 241 (365)
T ss_dssp CCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE--
T ss_pred CCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc--
Confidence 9999999999999998 57999999999988774 211 1112222234457899999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+...... .+++.++|.++..+|.+. +++++.+++++++++.+.+.|++++ +.+.+
T Consensus 242 -~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~ 303 (365)
T 3get_A 242 -NAN----IISAFYKLRAP--FNVSNLALKAAVAAMDDD-------EFTEKTLENNFSQMELYKEFAKKHN----IKIID 303 (365)
T ss_dssp -CHH----HHHHHHHHSCT--TCSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEECC
T ss_pred -CHH----HHHHHHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEECC
Confidence 888 88888775443 468899999999999864 6678889999999999999999886 44555
Q ss_pred cCcceeEecCC---CHHHHHHHhhhccEEEeCCC-------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG-------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 367 ~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg-------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+. |.|+|+.+ +.+.+.+.|.++||.+.+|+ ||+++ +++++++++++|++++
T Consensus 304 ~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 304 SY-TNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CS-SSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 54 45678865 45555444566899999872 99985 6889999999998875
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=317.32 Aligned_cols=339 Identities=10% Similarity=0.074 Sum_probs=262.2
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
++++|+|+.|.+ +. +.++.+.+.+...+... ...|++ +..++++++++++....+.+..++++. +++||++
T Consensus 31 ~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~--~~~g~~~ 101 (391)
T 4dq6_A 31 TNDLLPMWVADM-DF---KAAPCIIDSLKNRLEQE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLI--YSPGVIP 101 (391)
T ss_dssp CSCSEECCSSSC-SS---CCCHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEE--EESCHHH
T ss_pred CCCceeccccCC-CC---CCCHHHHHHHHHHHhCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeE--EcCChHH
Confidence 478999999984 22 44444545444555433 455655 568999999999733222123367888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec--CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY--DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++.++.+|+++++++++ + ++++++++|+|
T Consensus 102 a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~n 175 (391)
T 4dq6_A 102 AISLL--INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPHN 175 (391)
T ss_dssp HHHHH--HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSBT
T ss_pred HHHHH--HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCCC
Confidence 99988 66678899999999999999999999999999999884 23446799999999997 4 89999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+. +..++++++.|+||.+|++|+|+||++
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-- 251 (391)
T 4dq6_A 176 PVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV-- 251 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE--
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCccccCcEEEEEechhhccCcccceEEEE--
Confidence 999999999999999999999999999999999887642 122222221 123678999999999999999999996
Q ss_pred ecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcc
Q 013839 286 CVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWE 363 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~ 363 (435)
+++++ +++.+..... ..+.+++.+++.++..++.... +++++.+++++++++.+.+.|++. + ++.
T Consensus 252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~ 318 (391)
T 4dq6_A 252 LPDEK----DYKLLDDAFTRIDIKRNNCFSLVATEASYNNGE------SWLESFLEYLESNIDFAIKYINENMP---KLK 318 (391)
T ss_dssp CCSHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCT---TSE
T ss_pred eCCHH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchH------HHHHHHHHHHHHHHHHHHHHHHhhCC---CCE
Confidence 43447 7777776543 3445788888888888886432 567888899999999999999874 3 266
Q ss_pred ccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 364 HITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 364 ~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+..++++++.|+.+ +.+.+ ..+++++||.+.|| + |++++. +++++++++++|++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 319 VRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAI 390 (391)
T ss_dssp ECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred ecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 77889999988754 44444 55655449999885 2 999985 8899999999998876
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=306.39 Aligned_cols=328 Identities=13% Similarity=0.125 Sum_probs=259.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++++|+|+.|.+ +. +.++.+.+.+...+. . ...|+ ..+.+++|+++++++ +.. ++++. +++||
T Consensus 13 ~~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~-~-~~~y~-~~~~~~l~~~la~~~-~~~-----~~~i~--~~~g~ 77 (354)
T 3ly1_A 13 PSTDNPIRINFNEN-PL---GMSPKAQAAARDAVV-K-ANRYA-KNEILMLGNKLAAHH-QVE-----APSIL--LTAGS 77 (354)
T ss_dssp CCSSSCEECSSCCC-SS---CCCHHHHHHHHHTGG-G-TTSCC-HHHHHHHHHHHHHHT-TSC-----GGGEE--EESHH
T ss_pred CCCCceEEccCCCC-CC---CCCHHHHHHHHHHHh-h-CcCCC-CCchHHHHHHHHHHh-CCC-----hHHEE--EeCCh
Confidence 45689999999984 22 344444444444443 3 45574 468899999999998 322 56888 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++. .+++++|+++|++++++. ++++++++++|||
T Consensus 78 ~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~n 152 (354)
T 3ly1_A 78 SEGIRAA--IEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKM--LDNWAFDIEGLKAAVAAY-SGPSIVYLVNPNN 152 (354)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECC--CTTSCCCHHHHHHHHHTC-SSCEEEEEESSCT
T ss_pred HHHHHHH--HHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHHHhccC-CCCCEEEEeCCCC
Confidence 9999998 6667889999999999999999999999999999987 335899999999999743 3688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC-CeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE-HLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|++.| +||+++|+|++|.++.+++.. ....... +.. +++++++|+||.+|++|+|+||+++
T Consensus 153 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~--~~~~~~~-~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 227 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRF--RSISPMI-TQGAENIILLKTFSKIHAMAGMRVGYAVA- 227 (354)
T ss_dssp TTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTC--CCSHHHH-HTTCSSEEEEEESSSTTCCGGGCCEEEEC-
T ss_pred CcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccccc--CCHHHHh-hhcCCCEEEEeeChhhccChhhhheeeec-
Confidence 999999999999999999 899999999999988876421 1122222 333 7899999999999999999999964
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+...... .+++.+.|.++..+|.+. +++++.+++++++++.+.+.|++++. .+.
T Consensus 228 --~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 288 (354)
T 3ly1_A 228 --HPT----VIALMGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALEDLKL----PYL 288 (354)
T ss_dssp --CHH----HHHHHGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHHHTC----CBC
T ss_pred --CHH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCCC----eEC
Confidence 888 88888776544 678999999999999864 56788889999999999999998863 444
Q ss_pred ccCcceeEecCC--CHHHHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 366 TNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 366 ~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++ .|.|+|+.+ +.+.+.+.|.++||.+. | + ||+++ +++++++++++|++++++
T Consensus 289 ~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 289 PS-EGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CC-CSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CC-CceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 44 556788876 45555444557899998 3 1 99984 678999999999998864
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=316.17 Aligned_cols=313 Identities=16% Similarity=0.140 Sum_probs=257.2
Q ss_pred HHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCh
Q 013839 75 EAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWS 154 (435)
Q Consensus 75 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~ 154 (435)
++.+.+..+ ...|.+..|.++|++++++++.+.. ++++. +++||++|+.++ +.+++.+||+|+++.|+|.
T Consensus 47 ~~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~-----~~~v~--~~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~~~ 116 (375)
T 3op7_A 47 DFYKKLQGT-KLNYGWIEGSPAFKKSVSQLYTGVK-----PEQIL--QTNGATGANLLV--LYSLIEPGDHVISLYPTYQ 116 (375)
T ss_dssp HHHHHHHTS-CCSSCCTTCCHHHHHHHHTTSSSCC-----GGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESSCT
T ss_pred HHHHHHhcC-CcCCCCCCChHHHHHHHHHHhccCC-----hhhEE--EcCChHHHHHHH--HHHhcCCCCEEEEeCCCch
Confidence 334444444 5679999999999999999974322 56888 999999999998 6777899999999999999
Q ss_pred hhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeee
Q 013839 155 NHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFD 234 (435)
Q Consensus 155 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~D 234 (435)
++...++..|++++.+++..++++.+|+++++++++ ++++++++++|+||||.+++.+++++|.++|++||+++|+|
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D 193 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD 193 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999999998544567799999999997 67889999999999999999999999999999999999999
Q ss_pred ccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhH
Q 013839 235 MAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHG 314 (435)
Q Consensus 235 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (435)
|+|..+.+++. +.. .+..+++++++|+||.+|++|+|+||++ + +++ +++.++........+++.+.
T Consensus 194 e~~~~~~~~~~----~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v~--~-~~~----l~~~~~~~~~~~~~~~~~~~ 259 (375)
T 3op7_A 194 EVYRSFSELDV----PSI---IEVYDKGIAVNSLSKTYSLPGIRIGWVA--A-NHQ----VTDILRDYRDYTMICAGVFD 259 (375)
T ss_dssp CCSCCCSSSCC----CCH---HHHCTTEEEEEESSSSSSCGGGCCEEEE--C-CHH----HHHHHTTTGGGTTSCCCHHH
T ss_pred cccccccccCC----Cch---hhhcCCEEEEeEChhhcCCcccceEEEE--e-CHH----HHHHHHHHHhhhccCCCcHH
Confidence 99999887521 111 1234678999999999999999999996 3 888 88888877666667788898
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CH-HHHHHHhhhc
Q 013839 315 ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TP-YQVDRLAKEF 389 (435)
Q Consensus 315 q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~ 389 (435)
+.++..++... .+++++.+++++++++.+.+.|++.+. +.+..+.++++.|+.+ +. +++..+++++
T Consensus 260 ~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 330 (375)
T 3op7_A 260 DLVAQLALAHY------QEILERNRHILEENLAILDQWIEEEPL---VSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEH 330 (375)
T ss_dssp HHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---EEECCCSSSSCEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhC
Confidence 88888888653 366788888999999999999988642 5667788887777633 33 4557777789
Q ss_pred cEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 390 HIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 390 gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||.+.||. |++++. +.+++++++++|++++++..
T Consensus 331 gi~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 331 GVLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp CEECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGGC
T ss_pred CEEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHHh
Confidence 99999862 999876 66889999999999987654
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=316.97 Aligned_cols=345 Identities=10% Similarity=0.065 Sum_probs=261.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|.+ +. +.++.+.+.+...+... ...|++. .+++|+++++++....+.+..+++|. +|+||++|
T Consensus 31 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~--~t~g~~~a 101 (399)
T 1c7n_A 31 NEVVPLSVADM-EF---KNPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWII--NTAGVVPA 101 (399)
T ss_dssp TTCCCCCSSSC-SS---CCCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEE--EESSHHHH
T ss_pred CCceeeeecCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEE--EcCCHHHH
Confidence 57999999984 22 33333333333333222 4568764 89999999999732111112367888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +.+++.+||+|+++.|+|.++...++..|++++.+|..+++ ++.+|+++|++++++ ++++++++++|||||
T Consensus 102 ~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~npt 177 (399)
T 1c7n_A 102 VFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPV 177 (399)
T ss_dssp HHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTT
T ss_pred HHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCCC
Confidence 9998 66677899999999999999999999999999999873232 356999999999863 467889999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.|+||.+|++|+|+||++ ++
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~~ 253 (399)
T 1c7n_A 178 GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII--IK 253 (399)
T ss_dssp TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--CC
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEE--EC
Confidence 9999999999999999999999999999999887541 1122222211 13678999999999999999999996 43
Q ss_pred ChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccc
Q 013839 288 DSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHI 365 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~ 365 (435)
+++ +++.+....... +.+++.++|.++.++|.... +++++.+++++++++.+.+.|++ ++. +.+.
T Consensus 254 ~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~ 320 (399)
T 1c7n_A 254 NPD----IRERFTKSRDATSGMPFTTLGYKACEICYKECG------KWLDGCIKVIDKNQRIVKDFFEVNHPE---IKAP 320 (399)
T ss_dssp CHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---SBCC
T ss_pred CHH----HHHHHHHHHhhcccCCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhhCCC---CeEe
Confidence 467 777776655433 33678899988888886422 56788889999999999999987 532 5667
Q ss_pred ccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 366 TNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 366 ~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+++++++|+.+ +.+.+ ..+++++||.+.|| + ||+++. +++++++++++|++++++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHHHh
Confidence 788899888754 44444 55555789999975 2 999976 678899999999999887653
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=333.21 Aligned_cols=343 Identities=12% Similarity=0.054 Sum_probs=265.9
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCC-CC-ccc-cCCCeeeEecCCch
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGK-DS-DVV-KEGRSAGVQALSGT 127 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~-~~-~~~-~~~~v~~~~t~gg~ 127 (435)
++|+|+.|.| +. + +++.++++..++.. ...|.+..|.+++|+++++++... +. .+. .+++|+ +|+|++
T Consensus 104 ~~i~l~~g~~-~~---~-~~~~v~a~~~~~~~--~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~--~t~G~t 174 (533)
T 3f6t_A 104 DAVNYCHTEL-GL---N-RDKVVAEWVNGAVA--NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF--PTEGGT 174 (533)
T ss_dssp HHHHHHHHTT-CC---C-HHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE--EEEHHH
T ss_pred hheeccCCCC-Cc---C-CcHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE--EECCHH
Confidence 4789999996 32 2 45667777777653 222347889999999999998322 11 111 146788 899999
Q ss_pred hHHHHHHHHHH-----HhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC--CCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 128 GACRLFAEFQR-----RFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD--PDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 128 ~a~~~~~~~~~-----~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
+|+.++ +.. ++.+||+|++++|+|.++...++..|++++.+++.. ++++++|+++|++++. +++++++
T Consensus 175 ~al~~~--~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~ 249 (533)
T 3f6t_A 175 AAIVYA--FHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALI 249 (533)
T ss_dssp HHHHHH--HHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEE
T ss_pred HHHHHH--HHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEE
Confidence 999988 444 678999999999999999999999999988888743 4568999999999987 6789999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHH-hcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFK-VKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++||||||.+++.+++++|+++|+ +|++++|+||+|.++.++.. ++... ..+++++++||||.+|++|+|+
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~~--~~~~~i~~~S~SK~~g~~G~Ri 322 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYSV--VPYNTMLVYSYSKLFGCTGWRL 322 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHHH--SGGGEEEEEESHHHHTCGGGCE
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhhc--CCCCEEEEecCcccCCCcccce
Confidence 9999999999999999999999999 68999999999998887531 22221 2368999999999999999999
Q ss_pred cEEEEEecChhHHHHHHHH--------------------------------HHHHhhccccCCChhHHHHH----HHHhC
Q 013839 280 GCLSILCVDSKQAAAIRSQ--------------------------------IQQIARAMYGSPPVHGILLV----ATILS 323 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~--------------------------------l~~~~~~~~~~~~~~~q~~~----~~~l~ 323 (435)
||+++ ++++..+++++. +++.....+.+++.+.|.++ ..+|.
T Consensus 323 G~l~~--~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIAL--NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEE--CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 99974 355434434332 23334456678888888883 44553
Q ss_pred -C---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------------
Q 013839 324 -D---PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT--------------------- 378 (435)
Q Consensus 324 -~---~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~--------------------- 378 (435)
+ .. +.+++++.+++++++++.+.+.|. ++ +.+..+++|+|+|+++.
T Consensus 401 ~~~g~~~----~~~~~~~~~~~~~~r~~~l~~~L~-~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~ 471 (533)
T 3f6t_A 401 TSTNGGS----DDPYIDIARKLVSERYDQLHDAMQ-AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQ 471 (533)
T ss_dssp TCBGGGT----BCHHHHHHHHHHHHHHHHHHHHHT-CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCH
T ss_pred hhccccc----hHHHHHHHHHHHHHHHHHHHHhcC-CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCH
Confidence 1 11 237788999999999999999996 54 56778899999998652
Q ss_pred HHHHHHHhhhccEEEeCC-------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 379 PYQVDRLAKEFHIYMTQD-------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+++.++++++||.+.|| + |+|++..+++++++++++|++++++...
T Consensus 472 ~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 472 VDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 256677888899999987 2 9999877899999999999999987654
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=311.00 Aligned_cols=341 Identities=9% Similarity=0.019 Sum_probs=255.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHH-HHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTK-MVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++|+|+.|.+ +. +.++.+.+.+.+.+... ...|++. .++ +|+++++++....+.+.++++|. +++|+++
T Consensus 28 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~--~t~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDM-DF---ATAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVV--YGPSVIY 98 (390)
T ss_dssp --CEECCSSSC-SS---CCCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEE--EESCHHH
T ss_pred CCeeEeeecCC-CC---CCCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEE--EcCCHHH
Confidence 47899999985 22 33334444444444332 4568775 678 99999999832222123367888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ +.+++.+||+|+++.|+|.++...++..|++++.+|...+. +|.+|+++|++++++ .+++++++++||||
T Consensus 99 al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~np 174 (390)
T 1d2f_A 99 MVSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNP 174 (390)
T ss_dssp HHHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTT
T ss_pred HHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCCC
Confidence 99988 66677899999999999999999999999999999874322 356999999999973 26788998999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. .-... +.|+||.+|++|+|+||++ ++
T Consensus 175 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~-~~~d~-~~s~sK~~~~~G~r~G~~~--~~ 248 (390)
T 1d2f_A 175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNVAR-GDWAL-LTSGSKSFNIPALTGAYGI--IE 248 (390)
T ss_dssp TCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGTCC-SSEEE-EECSHHHHTCGGGCCEEEE--EC
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHcch-hhHhh-ccCccHhhcccChhheEEE--EC
Confidence 99999999999999999999999999999999887531 1112222211 10123 9999999999999999996 33
Q ss_pred ChhHHHHHHHHHHHHhh-ccc-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccc
Q 013839 288 DSKQAAAIRSQIQQIAR-AMY-GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEH 364 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~-~~~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~ 364 (435)
+++ +++.+..... ... .+++.++|.++..++... .+++++.+++++++++.+.+.|++ ++ ++.+
T Consensus 249 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~ 315 (390)
T 1d2f_A 249 NSS----SRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMNAAFP---ELNW 315 (390)
T ss_dssp SHH----HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHCS---SCCC
T ss_pred CHH----HHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHHhhCC---CCEE
Confidence 467 7777766554 233 478888888888877642 256788889999999999999988 43 2556
Q ss_pred cccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 365 ITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 365 ~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+++++++|+.+ +.+.+ ..+++++||.+.|| + ||+++. +++++++++++|++++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 316 QIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 7788888888744 44444 55554689999875 2 999987 6788999999999988653
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=303.82 Aligned_cols=322 Identities=11% Similarity=0.064 Sum_probs=253.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+++|+|+.|++ + .+ +++.+.+++.+.... ...|+ ..+..++|+++++++. .. ++++. +++||+
T Consensus 30 ~~~~~i~l~~~~~-~---~~-~~~~v~~a~~~~~~~-~~~y~-~~~~~~lr~~la~~~~-~~-----~~~v~--~~~g~t 94 (363)
T 3ffh_A 30 GLTKITKLSSNEN-P---LG-TSKKVAAIQANSSVE-TEIYP-DGWASSLRKEVADFYQ-LE-----EEELI--FTAGVD 94 (363)
T ss_dssp TCSCCEECSSCSC-T---TC-CCHHHHHHHHTCBSC-CCBC-----CHHHHHHHHHHHT-CC-----GGGEE--EESSHH
T ss_pred CCCceEEccCCCC-C---CC-CCHHHHHHHHHHHHH-hhcCC-CcchHHHHHHHHHHhC-CC-----hhhEE--EeCCHH
Confidence 3468999999984 2 23 334445555544333 44564 4688999999999983 22 56888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..++.+||+|++++|+|..+...++..|++++.++.. +++.+|+++++++++ ++++++++++||||
T Consensus 95 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~p~np 167 (363)
T 3ffh_A 95 ELIELL--TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID---EKTTIVWICNPNNP 167 (363)
T ss_dssp HHHHHH--HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc---cCCCEEEEeCCCCC
Confidence 999998 66678899999999999999999999999999999983 368999999999997 67899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++.+|++.|++ |+++|+|++|.++.++. ..+.....+..+++++++|+||.+|++|+|+||+++
T Consensus 168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--- 239 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQ----PEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA--- 239 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSSC----CCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE---
T ss_pred cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCcc----ccCHHHHhhcCCCEEEEeechhhhcCchhceeeeec---
Confidence 9999999999999998888 99999999999887621 112222334567899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~ 366 (435)
+++ +++.+..... ..+++.+++.++..+|.+. +++++.+++++++++.+.+.|++ .+ +.+.+
T Consensus 240 ~~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g----~~~~~ 302 (363)
T 3ffh_A 240 DKE----IIRQLNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAKRFEK----VKLYP 302 (363)
T ss_dssp CHH----HHHHHHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHCTT----CEECC
T ss_pred CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHhhCCC----ceECC
Confidence 888 8888877543 4578999999999999754 56788889999999999999998 54 45554
Q ss_pred cCcceeEecCC--CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 367 ~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+. |.|+|+.+ +.+.+.+.|.++||.+.+|. ||+++ +++++++++++|+++
T Consensus 303 ~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 303 AN-GNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKL 362 (363)
T ss_dssp CC-SSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred CC-CeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHh
Confidence 44 56788866 45555444456899999862 99985 788999999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=317.93 Aligned_cols=342 Identities=13% Similarity=0.058 Sum_probs=266.7
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++.|+|+.|.+ +. +.++.+++.+.+++... ...|++. ..++++++++++....+.+.++++|. +++|+++
T Consensus 60 g~~~i~~~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~--~~~g~~e 130 (421)
T 3l8a_A 60 NPELLQMWVADM-DF---LPVPEIKEAIINYGREH-IFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDIL--FIDGVVP 130 (421)
T ss_dssp CTTCEECCSSCC-CS---CCCHHHHHHHHHHHHHC-CSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEE--EESCHHH
T ss_pred CCCeeecccCCC-CC---CCCHHHHHHHHHHHhcC-CcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEE--EcCCHHH
Confidence 678999999984 33 44444544444444433 4557664 37899999999843322223467888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ +..++.+||+|+++.|+|.++...++..|.+++.+|+. .+.++.+|+++|++++.+ ++++++++++|+||
T Consensus 131 a~~~a--~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~np 206 (421)
T 3l8a_A 131 AISIA--LQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNP 206 (421)
T ss_dssp HHHHH--HHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTT
T ss_pred HHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCC
Confidence 99998 66668899999999999999999999999999999874 234467899999999973 46899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
||.+++.+++++|.++|++||+++|+||+|.++.+++. ...++..+. +..++++.+.|+||.+|++|+|+||++ +
T Consensus 207 tG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~--~ 282 (421)
T 3l8a_A 207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN--THHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI--I 282 (421)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE--C
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCccHHHcCchhcCcEEEEEeChhhccCchhheEeEE--c
Confidence 99999999999999999999999999999999987642 122332222 234678999999999999999999996 4
Q ss_pred cChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 287 VDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
++++ +++.+..... ..+.+++.+++.++.+++.... +++++.+++++++++.+.+.|++++ .+...
T Consensus 283 ~~~~----l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~---~i~~~ 349 (421)
T 3l8a_A 283 QNES----LRRKFQYRQLANNQHEVPTVGMIATQAAFQYGK------PWLEELKTVIEGNIKLVIKELEAKT---KIKVM 349 (421)
T ss_dssp CSHH----HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHC---SCEEE
T ss_pred CCHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhCC---CceEe
Confidence 3377 7777766543 3455788899988888886432 5678888999999999999998873 26778
Q ss_pred ccCcceeEecCC-----CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.++++++.|+.+ +. ++...+++++||.+.+| + ||+++. +++++++++++|+++++
T Consensus 350 ~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 350 EPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp CCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred CCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 889999998854 32 45566666789999975 1 999985 88999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=315.32 Aligned_cols=337 Identities=17% Similarity=0.142 Sum_probs=242.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHc-CCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVY-GKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~-~~~~~~~~~~~v~~~~t~g 125 (435)
++++.|+|+.|.+ +.+.++.+.+.+.++....... ...+|++..|.+++|+++++++. +. .++++|. +++|
T Consensus 31 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~----~~~~~v~--~~~G 103 (400)
T 3asa_A 31 PQHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGF----VDAKEIF--ISDG 103 (400)
T ss_dssp TTSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTS----SCGGGEE--EESC
T ss_pred CCCceEeccCCCC-CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCC----CCHHHEE--EccC
Confidence 4678999999985 3211111222233333322211 24569888899999999999974 31 2367888 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p 204 (435)
+++++.++ ..++.+||+|++++|+|.++...++..|++ ++.++..++.++..|+++ . ++++++++++|
T Consensus 104 ~~~al~~~---~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~----~~~~~v~l~~p 172 (400)
T 3asa_A 104 AKVDLFRL---LSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE----D----THIDILCLCSP 172 (400)
T ss_dssp HHHHHHHH---HHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCT----T----CCCSEEEEESS
T ss_pred hHHHHHHH---HHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhh----c----cCccEEEEeCC
Confidence 99998876 245689999999999999999999999999 998887422233344332 1 35678888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
|||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+....+++++++|+||.+|++|+|+||+++
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~ 250 (400)
T 3asa_A 173 NNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVI 250 (400)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEEC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchheeEEee
Confidence 99999999999999999999999999999999998876531 1112222222235789999999999999999999963
Q ss_pred EecChhHHHHH-------HHHHHHH-hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 285 LCVDSKQAAAI-------RSQIQQI-ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 285 ~~~~~~~~~~~-------~~~l~~~-~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+++ + +..+... ....+.+++.++|.++..+|.+. ++++.+++++++++.+.+.|+++
T Consensus 251 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~~~ 315 (400)
T 3asa_A 251 ---PQE----LTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL--------PQLEAIHYYRENSDLLRKALLAT 315 (400)
T ss_dssp ---CTT----CBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ---Chh----hccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH--------HHHHHHHHHHHHHHHHHHHHHHC
Confidence 666 4 3433322 22234468899999888887532 35567788899999999999887
Q ss_pred CCCCCccccccCcceeEecC-CC----H-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSG-LT----P-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~-~~----~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+ +.+..+.+|+|+|+. +. . +++..+++++||.+.|| + ||++.. +++++++++++|++++
T Consensus 316 g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 316 G----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDILAACERLQMAP 390 (400)
T ss_dssp T----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHHHHHHHHHHC--
T ss_pred C----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHHHHHHHHHHHHH
Confidence 6 456667778899987 52 2 45677777779999875 1 999644 8899999999999988
Q ss_pred Hhhh
Q 013839 421 RSEQ 424 (435)
Q Consensus 421 ~~~~ 424 (435)
++..
T Consensus 391 ~~~~ 394 (400)
T 3asa_A 391 ALQS 394 (400)
T ss_dssp ----
T ss_pred Hhhh
Confidence 7654
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=318.43 Aligned_cols=352 Identities=14% Similarity=0.082 Sum_probs=262.6
Q ss_pred CCCee-eeecceecCCCCCcccchHHHHHHHHhcCC-------C-----CCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 49 SPYKI-NLGVGAYRDDKGRPVVLQCVREAEAKIAGS-------E-----FLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 49 ~~~~i-~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
++++| +|+.|.| +. .+.+.+.+.+++.+.... . ...|.+..|.+++|+++++++....+..+.+
T Consensus 30 ~~~~i~~l~~g~p-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~ 106 (444)
T 3if2_A 30 SDQPVNMLGGGNP-AK--IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS 106 (444)
T ss_dssp SSSCCEECSCCCC-CC--CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred CchhhhccCCCCC-Cc--ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH
Confidence 47899 9999997 22 244456666666655422 1 2569999999999999999984332223347
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCC--------------EEEEc-CCCChhhHHH------HhhCCCCeeeeeecC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPES--------------HIYFP-DPTWSNHHNI------WRDAQIPERTYHYYD 174 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd--------------~Vlv~-~p~y~~~~~~------~~~~g~~~~~v~~~~ 174 (435)
++|+ +|+|+++|+.++ +..++.+|| +|+++ +|+|..+... +...|.+++.++..+
T Consensus 107 ~~i~--~t~G~t~al~~~--~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (444)
T 3if2_A 107 ENIA--LTNGSQNAFFYL--FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDG 182 (444)
T ss_dssp GGEE--EESSHHHHHHHH--HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETT
T ss_pred HHEE--EecCcHHHHHHH--HHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccc
Confidence 8988 999999999998 666778888 78876 8999998763 445677777777621
Q ss_pred CC---CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 175 PD---SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 175 ~~---~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
++ ++++|++.|++++.+..++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+....... .
T Consensus 183 ~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~---~ 259 (444)
T 3if2_A 183 EEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYS---D 259 (444)
T ss_dssp EEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCS---C
T ss_pred ccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccc---c
Confidence 11 25799999998843211678999999999999999999999999999999999999999997533211000 0
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
. .....+++++++|+||. +++|+|+||+++ +++ +++.+.........+++.+.|.++..++.... +
T Consensus 260 ~--~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~---~~~----l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~ 325 (444)
T 3if2_A 260 A--HLNWDNNTILCFSLSKI-GLPGMRTGIIVA---DAK----VIEAVSAMNAVVNLAPTRFGAAIATPLVANDR----I 325 (444)
T ss_dssp C--CCCCCTTEEEEEESTTT-TCGGGCCEEEEC---CHH----HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSH----H
T ss_pred c--cccCCCCEEEEechhhc-cCCCCceEEEEE---CHH----HHHHHHHHHHhccCCCChHHHHHHHHHHHcCc----h
Confidence 0 01235789999999997 789999999964 888 88888777666667888999999999998764 2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-----CCHHHHHHHhhhccEEEeCC---------
Q 013839 332 IDEVKI-MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG-----LTPYQVDRLAKEFHIYMTQD--------- 396 (435)
Q Consensus 332 ~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~pg--------- 396 (435)
.++..+ .++.++++++.+.+.|.+.-....+.+..+++|+|+|+. .+.+.+...++++||.+.||
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~ 405 (444)
T 3if2_A 326 KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDV 405 (444)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCC
Confidence 334444 677888888888888876411113556678889999983 35555544557789999864
Q ss_pred -------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 397 -------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 397 -------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+ ||+++. +++++++++++|++++++...
T Consensus 406 ~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 406 SDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp TTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHHc
Confidence 2 999987 899999999999999987653
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=303.73 Aligned_cols=314 Identities=15% Similarity=0.171 Sum_probs=245.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|++ +. ++++.+ ++ .. ...|++. +.+++|+++++++ +.. +++|. +++|++++
T Consensus 29 ~~~i~l~~~~~-~~---~~~~~v------a~-~~-~~~Y~~~-~~~~lr~~la~~~-~~~-----~~~v~--~~~G~~~a 87 (356)
T 1fg7_A 29 NGDVWLNANEY-PT---AVEFQL------TQ-QT-LNRYPEC-QPKAVIENYAQYA-GVK-----PEQVL--VSRGADEG 87 (356)
T ss_dssp TCSEECSSCCC-SS---CCCCCC------CC-CC-TTSCCCS-SCHHHHHHHHHHH-TSC-----GGGEE--EESHHHHH
T ss_pred CceEEeeCCCC-CC---CCCHhH------hh-hh-hccCCCc-cHHHHHHHHHHHh-CCC-----hHHEE--EcCCHHHH
Confidence 36899999984 22 223222 22 22 4568775 5899999999998 332 56888 99999999
Q ss_pred HHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +.+++.+| |+|+++.|+|..+...++..|++++.++. .+++++|+++++++++ +++++++++|||||
T Consensus 88 i~~~--~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~----~~~~v~l~~p~npt 159 (356)
T 1fg7_A 88 IELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD----GVKVVYVCSPNNPT 159 (356)
T ss_dssp HHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT----TEEEEEEESSCTTT
T ss_pred HHHH--HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHHhc----CCCEEEEeCCCCCC
Confidence 9988 66677899 99999999999999999999999999987 3457899999988774 57899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|++.|+ +++++|+||+|.++... .++..+.+..+++++++|+||.+|++|+|+||+++ +
T Consensus 160 G~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~------~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---~ 229 (356)
T 1fg7_A 160 GQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ------ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA---N 229 (356)
T ss_dssp CCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG------GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE---C
T ss_pred CCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC------CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEe---C
Confidence 99999999999999999 99999999999887621 11222223456799999999999999999999974 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+... ..+++.++|.++.++|.+.+ + +++++.+++++++++.+.+.|++++. +....+.
T Consensus 230 ~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~ 295 (356)
T 1fg7_A 230 EE----VINLLMKVIA--PYPLSTPVADIAAQALSPQG----I-VAMRERVAQIIAEREYLIAALKEIPC---VEQVFDS 295 (356)
T ss_dssp HH----HHHHHHHHSC--SSCSCHHHHHHHHHHTSHHH----H-HHHHHHHHHHHHHHHHHHHHHHHSTT---EEEECCC
T ss_pred HH----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCcc----H-HHHHHHHHHHHHHHHHHHHHHHhCCC---ceEECCC
Confidence 88 8887777543 23688899999999997542 1 23778889999999999999998752 2233455
Q ss_pred cceeEecCC-CHHHHHHHhhhccEEEeC-C------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 369 LGMFCFSGL-TPYQVDRLAKEFHIYMTQ-D------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 369 ~g~~~~~~~-~~~~~~~ll~~~gI~i~p-g------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+|+|+|+.+ +.+.+.+.|.++||.+.+ | + ||+++ +++++++++++|++
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 296 ETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRA 353 (356)
T ss_dssp SSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHh
Confidence 678889876 454443344679999998 5 2 99985 57888888888765
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=304.68 Aligned_cols=325 Identities=13% Similarity=0.072 Sum_probs=257.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+++|+|+.|++ +. +.++.+.+.+...+.......|++ .+..++|+++++++ +.. .++++. +|+||+
T Consensus 28 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~-g~~----~~~~i~--~~~g~t 95 (367)
T 3euc_A 28 DSHGLVKLDAMEN-PY---RLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM-QVP----AGMEVL--LGNGSD 95 (367)
T ss_dssp CCTTCEECCSSCC-CC---CCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH-TCC----TTCEEE--EEEHHH
T ss_pred CCCCeeEccCCCC-CC---CCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh-CCC----CcceEE--EcCCHH
Confidence 3468999999984 22 344444444444443222456866 58899999999998 331 156788 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++. .+++.+|++++++++++ .+++++++++||||
T Consensus 96 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 169 (367)
T 3euc_A 96 EIISML--ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPL--RADFTLDRGAMLAAMAE--HQPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHH--HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEEC--CTTSCCCHHHHHHHHHH--HCCSEEEEESSCTT
T ss_pred HHHHHH--HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecC--CCCCCCCHHHHHHHhhc--cCCCEEEEcCCCCC
Confidence 999988 6667889999999999999999999999999999998 33678999999999983 16788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 208 TGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||.+++.+++++|+++|++| |+++|+||+|.++...+. .+ ..+..++++++.|+||. +++|+|+||+++
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~---~~----~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~- 240 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW---MS----RLTDFGNLLVMRTVSKL-GLAGIRLGYVAG- 240 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS---GG----GGGTCTTEEEEEECCCT-TSCSCCEEEEEE-
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch---HH----HHhhCCCEEEEecchhh-cccccCceeeee-
Confidence 99999999999999999999 999999999998775431 11 22445788999999999 899999999974
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+..... ..+++.++|.++..+|... +++++.+++++++++.+.+.|++++. +...
T Consensus 241 --~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g---~~~~ 302 (367)
T 3euc_A 241 --DPQ----WLEQLDKVRP--PYNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMAAHGG---VTVF 302 (367)
T ss_dssp --CHH----HHHHHGGGCC--SSCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHHTSTT---CEEC
T ss_pred --CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---cEEC
Confidence 888 7777766543 4568899999999999872 66788889999999999999998732 4543
Q ss_pred ccCcceeEecCC-CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 366 ~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+.+|.|+|+.+ +.+.+.+.|+++||.+.+++ ||+++ +++++++++++|++++
T Consensus 303 -~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 303 -PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASL 365 (367)
T ss_dssp -CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred -CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHh
Confidence 45667888877 55556555578999999762 99985 7899999999998875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=327.00 Aligned_cols=340 Identities=12% Similarity=0.066 Sum_probs=250.3
Q ss_pred eeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCC----CccccCCCeeeEecCCch
Q 013839 52 KINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKD----SDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 52 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~----~~~~~~~~v~~~~t~gg~ 127 (435)
+|+|++|.| .. .++..++++...+. ..+|+++.|.+++|+++++++.... .....+++|+ +|+|++
T Consensus 106 ~i~l~~g~~-~~----~~~~~~~al~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~--~t~G~~ 175 (546)
T 2zy4_A 106 SLSYVRDQL-GL----DPAAFLHEMVDGIL---GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLF--AVEGGT 175 (546)
T ss_dssp HHHHHHHTS-CC----CHHHHHHHHHHHHH---TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEE--EEEHHH
T ss_pred hhecccCCC-CC----CChHHHHHHHHhhh---cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEE--EECCHH
Confidence 789999985 22 23345555544442 2569999999999999988763211 1112367888 999999
Q ss_pred hHHHHHHHHHH---HhCCCCEEEEcCCCChhhHHHHhh--CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 128 GACRLFAEFQR---RFHPESHIYFPDPTWSNHHNIWRD--AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 128 ~a~~~~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
+++.++...+. ++.+||+|++++|+|+.|...+.. .|++++.+++.++.+|.+|++.|++.+. +++++++++
T Consensus 176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~ 252 (546)
T 2zy4_A 176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFCV 252 (546)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEEE
Confidence 99998832211 468999999999999999887554 4678888887444457899999988775 678999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH--HhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 203 SAHNPTGVDPTEEQWREISYQF--KVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~--~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
+||||||.+++.+++++|+++| ++++++||+||+|.++.++. . ++... ..+++++++||||.+|++|+|+|
T Consensus 253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~--~---s~~~~--~~~~~i~~~S~SK~~g~~GlRiG 325 (546)
T 2zy4_A 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF--Q---SLFAI--CPENTLLVYSFSKYFGATGWRLG 325 (546)
T ss_dssp SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC--C---CHHHH--CGGGEEEEEESTTTTTCGGGCEE
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC--c---CHHHh--CCCCEEEEEeCccccCCCCcceE
Confidence 9999999999999999999999 78999999999999987542 1 22222 13689999999999999999999
Q ss_pred EEEEEecChhHHHHHHHH--------HHH-H-----------------------hhccccCCChhHHHHH-----HHHhC
Q 013839 281 CLSILCVDSKQAAAIRSQ--------IQQ-I-----------------------ARAMYGSPPVHGILLV-----ATILS 323 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~--------l~~-~-----------------------~~~~~~~~~~~~q~~~-----~~~l~ 323 (435)
|+++ ++++..+.+... +.+ + ......+.+.+.|.++ .+++.
T Consensus 326 ~~~~--~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 326 VVAA--HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEE--ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred EEEE--CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 9974 344433332211 001 0 1123346788888764 24455
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------------HHHH
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------------------PYQV 382 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~ 382 (435)
+.+ .+.++.++.++++++.+.+.|. .+ +...++++|||+|+++. .+++
T Consensus 404 ~~~------~~~~~~r~~~~~r~~~l~~~L~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l 472 (546)
T 2zy4_A 404 EAD------EYKHTLKQLIRRRETTLYRELG-MP----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDML 472 (546)
T ss_dssp TTC------HHHHHHHHHHHHHHHHHHGGGT-SS----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred ccH------HHHHHHHHHHHHHHHHHHHhcC-CC----cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHH
Confidence 433 6778888899999998888875 43 34567889999987642 2446
Q ss_pred HHHhhhccEEEeCCC---------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 383 DRLAKEFHIYMTQDG---------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 383 ~~ll~~~gI~i~pgg---------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.++++++||.+.||. ||+++..+++++++++++|++++++..
T Consensus 473 ~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 473 FRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 677788999999972 999986678889999999999987655
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=287.28 Aligned_cols=313 Identities=15% Similarity=0.120 Sum_probs=238.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..++.|+|+.++. ..+ +++.+.+++...... ...|+ ..|.+++|+++++++ +.. +++|+ +++|++
T Consensus 14 ~~~~~i~l~~n~~----~~~-~~~~v~~a~~~~~~~-~~~y~-~~~~~~lr~~la~~~-~~~-----~~~i~--~t~G~~ 78 (337)
T 3p1t_A 14 AAAQAVCLAFNEN----PEA-VEPRVQAAIAAAAAR-INRYP-FDAEPRVMRKLAEHF-SCP-----EDNLM--LVRGID 78 (337)
T ss_dssp CCCCCEECSSCCC----CSC-CCHHHHHHHHHHGGG-TTSCC-TTHHHHHHHHHHHHH-TSC-----GGGEE--EESHHH
T ss_pred CCCCceEeeCCCC----CCC-CCHHHHHHHHHhhhh-hccCC-CCchHHHHHHHHHHh-CcC-----HHHEE--EeCCHH
Confidence 3467999999972 123 334455555554433 45684 578999999999998 332 56888 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..+ +||+|++++|+|..+...++..|++++.++. ++++++|++++++. .+++++++++||||
T Consensus 79 ~~l~~~--~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~-----~~~~~v~i~~p~np 147 (337)
T 3p1t_A 79 ECFDRI--SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL--TDDLLLDPNDLAQV-----SRDDCVVLANPSNP 147 (337)
T ss_dssp HHHHHH--HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECB--CTTSSBCHHHHTTC-----CTTEEEEEESSCTT
T ss_pred HHHHHH--HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHhh-----cCCCEEEEeCCCCC
Confidence 999887 4433 9999999999999999999999999999987 34678999998764 35789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++.+ +|+++++ +|+||+|.++.+.+.. .....+++++++|+||.+|++|+|+||+++
T Consensus 148 tG~~~~~~~l~~---l~~~~~~-~ivDea~~~~~~~~~~--------~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~--- 212 (337)
T 3p1t_A 148 TGQALSAGELDQ---LRQRAGK-LLIDETYVDYSSFRAR--------GLAYGENELVFRSFSKSYGLAGLRLGALFG--- 212 (337)
T ss_dssp TCCCCCHHHHHH---HHHHCSE-EEEECTTGGGSSCSSS--------CCCCBTTEEEEEESSSTTCCTTTCCEEEEC---
T ss_pred CCCCCCHHHHHH---HHHhCCc-EEEECCChhhcccccc--------ccccCCCEEEEeeCchhccCcchheEEEEe---
Confidence 999999886555 5667776 5669999987754311 113346789999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.. ...+++.++|.++..+|.+. +...+.++++.++++.+.+.|++++ +.+.++
T Consensus 213 ~~~----~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 275 (337)
T 3p1t_A 213 PSE----LIAAMKRKQ--WFCNVGTLDLHALEAALDND-------RAREAHIAKTLAQRRRVADALRGLG----YRVASS 275 (337)
T ss_dssp CHH----HHHHHHTTS--CTTCSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CCBCCC
T ss_pred CHH----HHHHHHhhc--CCCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCc----CEECCC
Confidence 888 777777643 34578889999998899874 3344556667778888999999886 456677
Q ss_pred CcceeEecCCCHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGLTPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 368 ~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+++++.|...+.+.+.++++++||.+.||. |||++ +++++++++++|+++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 276 EANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYS 334 (337)
T ss_dssp SSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHh
Confidence 777665555555566666678999999872 99985 5788999999988764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=323.29 Aligned_cols=341 Identities=10% Similarity=0.045 Sum_probs=261.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|+| +. +.++.+.+.+.+++... ...|++. .+++++++++++....+.+.++++|. +++|+++|
T Consensus 31 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~--~~~g~~~a 101 (392)
T 3b1d_A 31 PQLLPAWIADM-DF---EVMPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIV--FVEGVVPA 101 (392)
Confidence 38899999996 43 33444444444444333 4567765 78999999999854433334467888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++ +|.+|++.+++.+.+ ++++++++++|+|||
T Consensus 102 ~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~npt 177 (392)
T 3b1d_A 102 ISIA--IQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNPG 177 (392)
Confidence 9988 66667899999999999999999999999999999873232 366899999998863 356788899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++++|+++|++||+++|+||+|.++.+++ ....++..+.. ..+++++++|+||.+|++|+|+||++ ++
T Consensus 178 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~~ 253 (392)
T 3b1d_A 178 GRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFG--HEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI--IE 253 (392)
Confidence 999999999999999999999999999999998754 12233333322 15688999999999999999999996 33
Q ss_pred ChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccc
Q 013839 288 DSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHI 365 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~ 365 (435)
+++ +++.+.+..... +.+++.++|.++..+|.+.. +++++.+++++++++.+.+.|++ ++ .+.+.
T Consensus 254 ~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~ 320 (392)
T 3b1d_A 254 NPT----LCAQFKHQQLVNNHHEVSSLGYIATETAYRYGK------PWLVALKAVLEENIQFAVEYFAQEAP---RLKVM 320 (392)
Confidence 456 666676655433 24568888888888887532 56788889999999999999877 43 25677
Q ss_pred ccCcceeEecCCC-----H-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGLT-----P-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~~-----~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.+++++++|+.+. . ++...+++++||.+.||. ||+++. +++++++++++|+++++
T Consensus 321 ~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 321 KPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 8899999988652 2 234555557899999851 999876 78999999999988764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=290.97 Aligned_cols=337 Identities=13% Similarity=0.073 Sum_probs=249.2
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
.+....+++.. +++++|||+.|.+ +. ..++. +.+++.+.... ...|++ .|.+++|+++++++ +.. +
T Consensus 11 ~~~~~~~~~~~-~~~~~idl~~~~~-~~---~~~~~-v~~a~~~~~~~-~~~y~~-~~~~~l~~~la~~~-~~~-----~ 76 (364)
T 1lc5_A 11 NIREPATVLGI-SPDQLLDFSANIN-PL---GMPVS-VKRALIDNLDC-IERYPD-ADYFHLHQALARHH-QVP-----A 76 (364)
T ss_dssp CCHHHHHHHTS-CGGGSEECSSCCC-TT---CCCHH-HHHHHHHTGGG-GGSCCC-TTCHHHHHHHHHHH-TSC-----G
T ss_pred cHHHHHHhcCC-CccceEEeccccC-CC---CCCHH-HHHHHHHHHHH-hhcCCC-CCHHHHHHHHHHHH-CcC-----H
Confidence 34455555532 4467999999984 22 33333 44444443322 456865 58999999999998 322 5
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
+++. +++|+++++.++ +..+ +||+|+++.|+|.++...++..|++++.++..+++++.+ ++++.+.+. ++
T Consensus 77 ~~v~--~~~g~~~al~~~--~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~---~~ 146 (364)
T 1lc5_A 77 SWIL--AGNGETESIFTV--ASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT---PD 146 (364)
T ss_dssp GGEE--EESSHHHHHHHH--HHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC---TT
T ss_pred HHEE--ECCCHHHHHHHH--HHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc---CC
Confidence 6788 999999999988 4444 789999999999999999999999999998732233333 566666664 56
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.....+..+++++++|+||.+|++
T Consensus 147 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-----~~~~~~~~~~~~i~~~s~sK~~~~~ 221 (364)
T 1lc5_A 147 LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET-----GFIPALKDNPHIWVLRSLTKFYAIP 221 (364)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC-----CSGGGCTTCTTEEEEEESTTTTTCT
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc-----chhhHhccCCCEEEEEECchhhcCC
Confidence 78888999999999999999999999999999999999999998876421 1111223356789999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||++ +.+++ +++.+..... ..+++.++|.++..+|+.. +++++.+++++++++.+.+.|++
T Consensus 222 G~r~G~~~--~~~~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~ 286 (364)
T 1lc5_A 222 GLRLGYLV--NSDDA----AMARMRRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQALCQ 286 (364)
T ss_dssp TTCCEEEE--CCCHH----HHHHHHHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEE--ECCHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999996 12888 7777776543 4578899999999999873 56788889999999999999987
Q ss_pred hCCCCCccccccCcceeEecCCC--H-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 356 LGSSLNWEHITNQLGMFCFSGLT--P-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++ ++.+.++ .|.|+|+.+. . ++...++ ++||.+.|| + ||+++ +.+++++++++|++++++
T Consensus 287 ~~---~~~~~~~-~g~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 287 LP---LLTVYPG-RANYLLLRCEREDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp ST---TEEECCC-SSSEEEEEESCTTCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC--
T ss_pred CC---CCEECCC-CCeEEEEECCCcHHHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhc
Confidence 73 2455544 4557776542 2 3456554 679999975 1 99974 567888999999888765
Q ss_pred h
Q 013839 423 E 423 (435)
Q Consensus 423 ~ 423 (435)
+
T Consensus 360 ~ 360 (364)
T 1lc5_A 360 I 360 (364)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=292.70 Aligned_cols=326 Identities=14% Similarity=0.158 Sum_probs=244.2
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
..|||+.|.+ +. +.++.+.+.+...+.. .....|++..+ .++++++++++....+...++++|. +++|+++
T Consensus 31 ~~idl~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~--~~~G~~~ 103 (369)
T 3cq5_A 31 VDIRLNTNEN-PY---PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLW--AANGSNE 103 (369)
T ss_dssp CSEECSSCCC-CS---CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEE--EESHHHH
T ss_pred cceeccCCCC-CC---CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEE--ECCChHH
Confidence 3499999985 22 3333444443333321 12456877666 7999999999732111112266888 8999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +.+++.+||+|++++|+|..+...++..|++++.++. ++++++|++++++++.+ .+++++++++|||||
T Consensus 104 al~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~npt 177 (369)
T 3cq5_A 104 ILQQL--LQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRA--KQPDIVFVTTPNNPT 177 (369)
T ss_dssp HHHHH--HHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHH--HCCSEEEEESSCTTT
T ss_pred HHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence 99888 6667789999999999999999999999999999986 34578999999999973 156788889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC-eEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH-LIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++.+|++ .+++++|+||+|..+.++. +.....+..+ ++++++|+||.+|++|+|+||+++
T Consensus 178 G~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~~------~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--- 245 (369)
T 3cq5_A 178 GDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPSP------SATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA--- 245 (369)
T ss_dssp CCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCSC------CGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEE---
T ss_pred CCCCCHHHHHHHHH---hCCCEEEEECCchhhcCCc------chHHHHhhCCCCEEEEEechHhcCCcccceEEEEe---
Confidence 99999886666555 4559999999999887531 1112223334 789999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+..... ..+++.+.|.++..+|.+. +++++.+++++++++.+.+.|++.+ +.+.++
T Consensus 246 ~~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 308 (369)
T 3cq5_A 246 NPA----FIDAVMLVRL--PYHLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLEELG----YAVVPS 308 (369)
T ss_dssp CTH----HHHHHHTTSC--TTCSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHHHHT----CEEECC
T ss_pred CHH----HHHHHHHcCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEECCC
Confidence 777 7777776443 3468889999988888763 4677888899999999999998876 445544
Q ss_pred CcceeEecCC--CHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.|.|+|+.+ +.+.+.+.+.++||.+.|+| |++++ +++++++++++|+++++
T Consensus 309 -~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 309 -ESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -SSSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred -CCeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 456777765 45545444467999999973 99985 67889999999988764
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=287.66 Aligned_cols=322 Identities=11% Similarity=0.077 Sum_probs=244.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++++|||+.|.+ +. +.++.+.+.+.+.+.. ...|+ ..+..++|+++++++ +.. ++++. +++||+
T Consensus 24 ~~~~~idl~~~~~-~~---~~~~~v~~a~~~~~~~--~~~y~-~~~~~~l~~~la~~~-~~~-----~~~i~--~~~g~t 88 (361)
T 3ftb_A 24 KGRELLDYSSNIN-PL---GIPKSFLNNIDEGIKN--LGVYP-DVNYRRLNKSIENYL-KLK-----DIGIV--LGNGAS 88 (361)
T ss_dssp ----CEETTCCCC-TT---CSCHHHHTTHHHHHHG--GGSCC-CTTCHHHHHHHHHHH-TCC-----SCEEE--EESSHH
T ss_pred CCCCEEEecCCCC-CC---CCCHHHHHHHHHHHHH--hcCCC-CccHHHHHHHHHHHh-CCC-----cceEE--EcCCHH
Confidence 5678999999984 22 3333333333333332 34574 478899999999998 322 56788 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..+ |+|+++.|+|.++...++..|++++.++.. .+.++++++++++++ + ++++++++||||
T Consensus 89 ~al~~~--~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~l~---~-~~~v~i~~p~np 156 (361)
T 3ftb_A 89 EIIELS--ISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENMCIDYEDIISKID---D-VDSVIIGNPNNP 156 (361)
T ss_dssp HHHHHH--HTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHTT---T-CSEEEEETTBTT
T ss_pred HHHHHH--HHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecC--cccCCCHHHHHHhcc---C-CCEEEEeCCCCC
Confidence 999888 4433 999999999999999999999999999983 334678899999997 4 789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.++. ..+.....+..+++++++|+||.+|++|+|+||++ +.
T Consensus 157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~--~~ 230 (361)
T 3ftb_A 157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP----SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI--TN 230 (361)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT----TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE--ES
T ss_pred CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc----ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEE--eC
Confidence 9999999999999999999999999999999888751 11222233445788999999999999999999996 23
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-ccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-HIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~ 366 (435)
+++ +++.+..... ..+++.++|.++..+|.+. +++++.+++++++++.+.+.|++++. +. ..+
T Consensus 231 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~ 294 (361)
T 3ftb_A 231 NKE----IAAKIKAKQN--PWNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELNKIGF---IKRVFS 294 (361)
T ss_dssp CHH----HHHHHHTTSC--TTCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHHHSSS---EEEEEC
T ss_pred CHH----HHHHHHhhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---CceecC
Confidence 888 8887776543 3578899999999999863 66788899999999999999998752 55 555
Q ss_pred cCcceeEecCC---CHHHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL---TPYQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 367 ~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+.+ .|+|+.+ +.+.+...|.++||.+.|| + ||+++ +.++++++.++|+++.+
T Consensus 295 ~~~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 295 PHA-NFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp CSS-SEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred CCC-eEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 555 4666643 4554533345579999986 1 99984 56778888888887664
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=305.26 Aligned_cols=326 Identities=12% Similarity=0.064 Sum_probs=239.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CC--CCCCCCCCccc-----HHHHHHHHHhHcCCCCccccC-CC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GS--EFLESISASVS-----TKMVEESVKLVYGKDSDVVKE-GR 117 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~Y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~-~~ 117 (435)
.++++|+|+.|.| +. +.+ +.+.++..... .. ...+|++..|. ++||+++++++. ..+..+.+ ++
T Consensus 20 ~~~~~i~l~~g~p-~~---~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 93 (391)
T 3bwn_A 20 MSDFVVNLDHGDP-TA---YEE-YWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRY 93 (391)
T ss_dssp TTTSCEECSSCCC-GG---GHH-HHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSE
T ss_pred CCCCeeEcCCCCC-CC---CCC-HHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCe
Confidence 4568899999996 32 333 33333331111 11 35679999998 999999999984 22223334 58
Q ss_pred eeeEecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 118 SAGVQALSGTGACRLFAEFQRRFHPES----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 118 v~~~~t~gg~~a~~~~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
|+ +|+|+++++.++ +.+++.+|| +|++++|+|..+...++..|++++.+++ +.+ +++ .
T Consensus 94 i~--~t~G~~~al~~~--~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~--~l~--------~--- 155 (391)
T 3bwn_A 94 IV--VGTGSTQLCQAA--VHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG-DAW--GFD--------K--- 155 (391)
T ss_dssp EE--EEEHHHHHHHHH--HHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE-EST--TCC--------C---
T ss_pred EE--EeCChHHHHHHH--HHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecC-CHH--HcC--------C---
Confidence 88 999999999998 666778999 9999999999999999999999998887 333 222 1
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++++||||||.+++ +|++.+++++++||+||+|.. .. ..++ ....+++|+++||||.+|
T Consensus 156 ~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~----~~~l---~~~~~~~i~~~S~SK~~g 220 (391)
T 3bwn_A 156 KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH----YTPI---TRRQDHDIMLFTFSKITG 220 (391)
T ss_dssp CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT----TSCC---CCCBCCSEEEEEHHHHHS
T ss_pred CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC----CCcc---ccCCCCeEEEEechhhcC
Confidence 46789999999999999996 354422223399999999963 11 0111 113468999999999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH-H---HHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK-S---LWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~-~---~~~~~~~~~~~~~~~~~~~l 349 (435)
++|+|+||++ +.+++ +++.+.+.......+++.++|.++..+|.+.... . .+.+++++.++.++++++.+
T Consensus 221 ~~GlRiG~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (391)
T 3bwn_A 221 HAGSRIGWAL--VKDKE----VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKL 294 (391)
T ss_dssp CGGGCEEEEE--ECCHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEE--ecCHH----HHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 33677 8888887766556789999999999998754100 0 01357888999999999999
Q ss_pred HHHHHhhCCCCCccccc-------------cCcceeEecCCC-HHHHHHHhhhccEEEeCC-------C--cEEeccCCC
Q 013839 350 RQNLEKLGSSLNWEHIT-------------NQLGMFCFSGLT-PYQVDRLAKEFHIYMTQD-------G--RISMAGVTT 406 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~-------------~~~g~~~~~~~~-~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~ 406 (435)
.+.|++++. +.+.. +++|+|+|+++. .+++..+++++||.+.|| + |||++. ++
T Consensus 295 ~~~L~~~~~---~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~-~~ 370 (391)
T 3bwn_A 295 REVVKESDA---FTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS-RE 370 (391)
T ss_dssp HHHHHTCSS---EECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS-CH
T ss_pred HHHHHhCCC---cccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC-CH
Confidence 999998731 33322 456779999774 456666778899999985 2 999987 88
Q ss_pred CcHHHHHHHHHHHHHh
Q 013839 407 GNVNYLANAIHEVTRS 422 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~ 422 (435)
+++++++++|++++++
T Consensus 371 e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 371 DVFNVFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999987754
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=284.20 Aligned_cols=317 Identities=16% Similarity=0.158 Sum_probs=241.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++++|+|+.|++ +. +.++.+.+.+...+..+ ....|++. +..++|+++++++ +. +++++. +++|
T Consensus 24 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~-g~-----~~~~i~--~t~g 90 (360)
T 3hdo_A 24 DIASWIKLNTNEN-PY---PPSPEVVKAILEELGPDGAALRIYPSA-SSQKLREVAGELY-GF-----DPSWII--MANG 90 (360)
T ss_dssp CCTTSEECSSCCC-SS---CCCHHHHHHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHH-TC-----CGGGEE--EESS
T ss_pred cccceeeccCCCC-CC---CCCHHHHHHHHHHHhcccchhhcCCCC-chHHHHHHHHHHh-Cc-----CcceEE--EcCC
Confidence 3468999999995 32 44444544444444432 14557654 6799999999998 32 256888 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
|++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. +++.+ +++++.+ +++++++++|+
T Consensus 91 ~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~--~~l~~~~-----~~~~v~i~~p~ 159 (360)
T 3hdo_A 91 SDEVLNNL--IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GDFRI--AGFPERY-----EGKVFFLTTPN 159 (360)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBC--TTSSB--TTCCSSB-----CSSEEEEESSC
T ss_pred HHHHHHHH--HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCC--CCCCH--HHHHhhc-----CCCEEEEeCCC
Confidence 99999998 67778999999999999999999999999999999882 33444 4443322 24588999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+ ++.++|+++|+++|+||+|.++.... ..+. .+..+++++++|+||.+|++|+|+||+++
T Consensus 160 nptG~~~~~~---~l~~l~~~~~~~li~De~~~~~~~~~----~~~~---~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 228 (360)
T 3hdo_A 160 APLGPSFPLE---YIDELARRCAGMLVLDETYAEFAESN----ALEL---VRRHENVVVTRTLSKSYSLAGMRIGLAIA- 228 (360)
T ss_dssp TTTCCCCCHH---HHHHHHHHBSSEEEEECTTGGGSSCC----CTHH---HHHCSSEEEEEESTTTTSCTTSCCEEEEC-
T ss_pred CCCCCCcCHH---HHHHHHHHCCCEEEEECChHhhCCcc----hhHH---hccCCCEEEEecchHhhcCCccceeeEee-
Confidence 9999999987 45666788999999999998874321 1122 23357899999999999999999999963
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+..... ..+++.++|.++..+|.+. +++++.+++++++++.+.+.|++++ +.+.
T Consensus 229 --~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~ 289 (360)
T 3hdo_A 229 --RPE----VIAALDKIRD--HYNLDRLAQAACVAALRDQ-------AYLSECCRRIRETREWFTTELRSIG----YDVI 289 (360)
T ss_dssp --CHH----HHHHHHHHSC--SCCSCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEEC
T ss_pred --CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEEc
Confidence 888 8888877543 3578899999999999863 5678888999999999999999885 4455
Q ss_pred ccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++. +.|+|+.+ +.+.+.+.|.++||.+.+++ ||+++ +++++++++++|+++.+
T Consensus 290 ~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 290 PSQ-GNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGE 353 (360)
T ss_dssp CCS-SSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC
T ss_pred CCC-ccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhc
Confidence 444 45666643 55556555567899999852 99985 68999999999988754
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=282.81 Aligned_cols=310 Identities=14% Similarity=0.163 Sum_probs=234.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
++.|+|+.|.+ +. +.++.+.+.+...+.......|++ .+.+++|+++++++... +.+++++. +++|++++
T Consensus 19 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~--~~~G~~~a 88 (335)
T 1uu1_A 19 RDKTYLALNEN-PF---PFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVS--VGNGADEI 88 (335)
T ss_dssp CCSEEESSCCC-SS---CCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEE--EESSHHHH
T ss_pred CcceECCCCCC-CC---CCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEE--EcCChHHH
Confidence 46899999985 22 334444444444442222455765 47999999999999432 23367888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +..+ ||+|+++ |+|.++...++..|++++.++. ++++++|++++ ++++++++++||||||
T Consensus 89 l~~~--~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l--------~~~~~v~l~~p~nptG 152 (335)
T 1uu1_A 89 IYVM--MLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPL--TKDLRIPEVNV--------GEGDVVFIPNPNNPTG 152 (335)
T ss_dssp HHHH--HHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCC--CTTSCCCCCCC--------CTTEEEEEESSCTTTC
T ss_pred HHHH--HHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEecc--CCCCCCCHHHc--------CCCCEEEEeCCCCCCC
Confidence 9888 4443 8999999 9999999999999999999987 34578888887 2578898899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++|++.| + ++|+||+|.++.... .....+..+++++++|+||.+|++|+|+||+++ ++
T Consensus 153 ~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~-------~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---~~ 218 (335)
T 1uu1_A 153 HVFEREEIERILKTG---A-FVALDEAYYEFHGES-------YVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVA---SE 218 (335)
T ss_dssp CCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC-------CGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEE---CH
T ss_pred CCCCHHHHHHHHHhC---C-EEEEECcchhhcchh-------HHHHhhhCCCEEEEecchhhcCCcccCeEEEEe---CH
Confidence 999999888888877 7 899999998776421 111123456899999999999999999999974 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+..... ..+++.++|.++..+|.+. ++.++.+++++++++.+.+.|+++|. .+. +.+
T Consensus 219 ~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~-~~~ 280 (335)
T 1uu1_A 219 K----FIDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMGY----RIT-DSR 280 (335)
T ss_dssp H----HHHHHHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHTC----CBC-CCC
T ss_pred H----HHHHHHHhcC--CCCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCCc----EEc-CCC
Confidence 8 7777776543 2478899999999998763 45677888899999999999988863 343 445
Q ss_pred ceeEecCCC---HHHHHHHhhhccEEEeCCC---cEEeccCCCCcHHHHHHHHHHH
Q 013839 370 GMFCFSGLT---PYQVDRLAKEFHIYMTQDG---RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 370 g~~~~~~~~---~~~~~~ll~~~gI~i~pgg---Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
|+|+|+.+. .+.+...|.++||.+.|+. ||+++. .+++++++++|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 281 GNFVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp SSEEEEECCTHHHHHHHHHHHHHTEEEEEETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCHHHHHHHHHHCCEEEEECCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 678888763 3334333456899999753 999854 56788888888653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=296.86 Aligned_cols=328 Identities=11% Similarity=0.056 Sum_probs=244.4
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhc-CC-CCCCCCCCc-c---cHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GS-EFLESISAS-V---STKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~Y~~~~-g---~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
...+|+|+.|+| +. +.+..+.+.+...+. .+ ...+|++.. | .++||+++++++...+...+++++|+ +
T Consensus 55 ~~~~i~l~~g~~-~~---~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv--~ 128 (427)
T 2hox_A 55 QGCSADVASGDG-LF---LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIV--F 128 (427)
T ss_dssp TTCCEECCSCCC-GG---GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEE--E
T ss_pred CCceEEecCcCC-CC---CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEE--E
Confidence 357899999996 32 333333333333442 22 123499888 9 99999999999954333334478888 9
Q ss_pred cCCchhHHHHHHHHHHH--------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 123 ALSGTGACRLFAEFQRR--------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
|+|+++++.++ +.++ +.+||+|++++|+|..+...++..|++++.+ .+|++.|++++. +
T Consensus 129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~---~ 195 (427)
T 2hox_A 129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSN---P 195 (427)
T ss_dssp ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSC---G
T ss_pred eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee--------cCCHHHHHHhhc---C
Confidence 99999999998 7777 8899999999999999999999999887643 457788887776 5
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~ 274 (435)
+++++++++||||||.+++ +. ++ ++..|+|++|.+ + ..++..+. .+++|+++||||.+|+
T Consensus 196 ~~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~----~~s~~~~~--~~~~i~~~S~SK~~g~ 255 (427)
T 2hox_A 196 EQYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----P----HYTPIKYK--ADEDILLFTMSKFTGH 255 (427)
T ss_dssp GGEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----T----TTSCCCSC--BCCSEEEEEHHHHTSC
T ss_pred CceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC----C----CCCccccC--CCceEEEEeChhcCCC
Confidence 6899999999999999999 42 22 456788887642 1 11111121 4689999999999999
Q ss_pred cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh-hHH----HHHHHHHHHHHHHHHHHHHH
Q 013839 275 YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN-LKS----LWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 275 ~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-l~~----~~~~~~~~~~~~~~~~~~~l 349 (435)
+|+|+||++ +++++ +++.+.+.......+++.++|.++..+|.+.. ..+ .++++++..+++++++++.+
T Consensus 256 ~G~RiG~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 256 SGSRFGWAL--IKDES----VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp GGGCCEEEE--ECCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEE--ECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 999999996 43477 88888887766667899999999988887531 000 12356778889999999999
Q ss_pred HHHHHhh-CCC-------C---CccccccCcceeEecCCC---HHHHHHHhhhccEEEeCC-------C--cEEeccCCC
Q 013839 350 RQNLEKL-GSS-------L---NWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQD-------G--RISMAGVTT 406 (435)
Q Consensus 350 ~~~l~~~-~~~-------~---~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~ 406 (435)
.+.|+++ +.. . .+.+..+++|+|+|+++. .+++..+++++||.++|| + |+|++. ++
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~~ 408 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-TQ 408 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-CH
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-CH
Confidence 9999876 321 0 033446778999999774 345677777899999986 2 999987 88
Q ss_pred CcHHHHHHHHHHHHHh
Q 013839 407 GNVNYLANAIHEVTRS 422 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~ 422 (435)
+++++++++|++++++
T Consensus 409 e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 409 DDFDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8999999999988753
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=274.75 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=232.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|||+.|.+ .. +.++.+.+.+...+ .. ...|++..+ +++|+++++++ +.. +++++ +|+|++
T Consensus 13 ~g~~~id~~~~~~-~~---~~~~~v~~a~~~~~-~~-~~~y~~~~~-~~lr~~la~~~-~~~-----~~~i~--~t~g~~ 77 (350)
T 3fkd_A 13 LSSEIVNFSTTVW-TD---GDKDHLEKHLVENL-NC-IRHYPEPDA-GTLRQMLAKRN-SVD-----NNAIL--VTNGPT 77 (350)
T ss_dssp ---CCEECSCCSC-CC---SCCHHHHHHHHHTG-GG-GGSCCCTTC-HHHHHHHHHHT-TCC-----GGGEE--EESHHH
T ss_pred ccccEEEccCCCC-CC---CCCHHHHHHHHHhH-hH-HhcCCCCcH-HHHHHHHHHHh-CcC-----HHHEE--EcCCHH
Confidence 3478999999984 22 33444444444444 22 556888776 89999999998 322 56888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..+. ||+|+++.|+|..+...++..|++++.++..++ ..++++ ++++++++++||||
T Consensus 78 ~al~~~--~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~-----------~~~~~v~i~~p~np 141 (350)
T 3fkd_A 78 AAFYQI--AQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF-----------SNMDFCWLCNPNNP 141 (350)
T ss_dssp HHHHHH--HHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC-----------TTCSEEEEESSCTT
T ss_pred HHHHHH--HHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc-----------CCCCEEEEeCCCCC
Confidence 999888 55444 999999999999999999999999999987212 123443 35678888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|++.|+++ ++|+||+|.++.+++.. . . ...+..+++++++|+||.+|++|+|+||+++
T Consensus 142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~--~--~-~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--- 211 (350)
T 3fkd_A 142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI--R--P-ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA--- 211 (350)
T ss_dssp TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC--C--G-GGGTTCSSEEEEEESHHHHSCGGGCCEEEEC---
T ss_pred cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch--h--h-HHhhcCCCEEEEecCchhccCcchheEeEEe---
Confidence 99999999999999988876 99999999998876421 1 1 2234567899999999999999999999963
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+..... ..+++.++|.++..+|.+.. .+.+..++.. ++++.+.+.|++++ ++.+.++
T Consensus 212 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~-~~~~~l~~~L~~~~---~~~~~~~ 275 (350)
T 3fkd_A 212 NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPA------QFTLPIRKWQ-RNTVDFITALNRLD---GVEVHPS 275 (350)
T ss_dssp CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTT------TTCCCHHHHH-HHHHHHHHHHHHST---TEEECCC
T ss_pred CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHH------HHHHHHHHHH-HHHHHHHHHHhcCC---CcEECCC
Confidence 888 8888877543 35788999999999887653 1223333333 77888889998873 2555555
Q ss_pred CcceeEecCC---CHHH-HHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 368 QLGMFCFSGL---TPYQ-VDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 368 ~~g~~~~~~~---~~~~-~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
. +.|+|+.+ +.+. .+.+++++||.+.||. ||+++ +.+++++++++|++++++..
T Consensus 276 ~-~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~ 343 (350)
T 3fkd_A 276 G-TTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKYE 343 (350)
T ss_dssp S-SSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC--
T ss_pred C-CcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHhc
Confidence 4 44666543 4444 4656544899999862 99985 56888999999998876543
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=272.84 Aligned_cols=330 Identities=10% Similarity=0.039 Sum_probs=239.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++.|||+.|+| .+.+.++...+.+...+.. ....+|++..|.+++++++++++....+ .+++. +++|
T Consensus 41 ~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~--~~~g 111 (398)
T 3a2b_A 41 DGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAI--LFST 111 (398)
T ss_dssp TTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEE--EESS
T ss_pred CCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEE--EECC
Confidence 4567999999985 2323444444444443331 1133466777887888888777632211 13666 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~~~p 204 (435)
|++|+.++ +..++.+||+|++++|+|..+...++..|++++.++. +|+++|++.+++..+ +++++++++|
T Consensus 112 gt~a~~~~--~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 112 GFQSNLGP--LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp HHHHHHHH--HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred HHHHHHHH--HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 99999988 6767889999999999999999999999999888864 478999999984322 6899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe-EEEEecccccccccCCcccEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL-IGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+||||..++ +++|.++|++||+++|+||+|..+.++.. ..++....+..++ +++++|+||.++++| ||++
T Consensus 183 ~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~ 253 (398)
T 3a2b_A 183 FSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK---GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVA 253 (398)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEE
T ss_pred CCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC---CCchHhhcCCCcCCeEEEecccccccCCC---cEEE
Confidence 999999987 67999999999999999999988766421 1112122222345 699999999999778 9996
Q ss_pred EEecChhHHHHHHHHHHHH-hhccccCCChhHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 013839 284 ILCVDSKQAAAIRSQIQQI-ARAMYGSPPVHGILL-VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN 361 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 361 (435)
+ +++ +++.+... ......+.+.+.|.+ +..+|+.. ++.++.+++++++++.+.+.|++++
T Consensus 254 ~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g---- 315 (398)
T 3a2b_A 254 G---DAD----VIDFLKHNARSVMFSASMTPASVASTLKALEII-------QNEPEHIEKLWKNTDYAKAQLLDHG---- 315 (398)
T ss_dssp E---CHH----HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH-------HHCTHHHHHHHHHHHHHHHHHHHTT----
T ss_pred e---CHH----HHHHHHHhcccceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHhcC----
Confidence 4 788 77777664 223344555666664 44666431 3456788899999999999999886
Q ss_pred ccccccCcceeEecCCC----HH-HHHHHhhhccEEEeCC---------C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 362 WEHITNQLGMFCFSGLT----PY-QVDRLAKEFHIYMTQD---------G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 362 ~~~~~~~~g~~~~~~~~----~~-~~~~ll~~~gI~i~pg---------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+..+. |+|+|+.+. .+ +...++ ++||.+.|+ + ||+++. .+++++++++++|+++++++.
T Consensus 316 ~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 316 FDLGATE-SPILPIFIRSNEKTFWVTKMLQ-DDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp CCBCSCC-SSEEEEECCCHHHHHHHHHHHH-HTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCCCC-CCEEEEEcCCHHHHHHHHHHHH-HCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3455555 578888663 23 345554 569999875 2 999874 488999999999999987654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=258.07 Aligned_cols=328 Identities=14% Similarity=0.103 Sum_probs=228.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++++.|||+.|+|... ..++...+.+.+.+. .+ ....|+...+..++++.+++++ +. ++.+.
T Consensus 41 ~g~~~id~~~~~~~g~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~------~~~i~-- 108 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGL---ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL-GT------DDTIL-- 108 (399)
T ss_dssp TTEEEEECSSCCTTSC---TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH-TC------SEEEE--
T ss_pred CCeeEEEeeccCcccc---cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH-CC------CcEEE--
Confidence 4568999999976222 223333333333332 11 1122445566789999999998 33 22344
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC---CcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD---SSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ 198 (435)
+.+|++|+.++ +..++.+||+|+++.|+|..+...++..|++++.++. +|++++++.+++... ++++
T Consensus 109 -~~sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 109 -YSSCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp -ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred -ECchHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence 56678888877 6777899999999999999999999999999888875 367788888774222 7899
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCC
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~ 277 (435)
+++++|+||||.+++ +++|.++|++||+++|+||+|....++..... .....+ ..+.+++++|+||.++ |+
T Consensus 179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~---~~~~~~~~~~~di~~~s~sK~~~--g~ 250 (399)
T 3tqx_A 179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRG---TPEYCGVADRVDILTGTLGKALG--GA 250 (399)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC---HHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc---hHHhhCCCCCCcEEEecchHhcc--cC
Confidence 999999999999998 67999999999999999999953222211111 112222 2356799999999998 44
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+.||+++ +++ +++.+...... ...+.+.+.+.++...+... .++.++.+++++++++++.+.|++
T Consensus 251 ~gG~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~ 317 (399)
T 3tqx_A 251 SGGYTSG---HKE----IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL------KTEGPQLRKQLQENSRYFRAGMEK 317 (399)
T ss_dssp CCEEEEE---CHH----HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEc---CHH----HHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHHH
Confidence 5599964 888 77777664332 22345556555665565422 145678889999999999999999
Q ss_pred hCCCCCccccccCcceeEecCC----CH-HHHHHHhhhccEEEeCC-------C----cEEec-cCCCCcHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD-------G----RISMA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg-------g----Ris~~-~~~~e~i~~~~~~l~~ 418 (435)
+|. .+.++.++ |+|+.+ +. ++...++ ++||.+.|+ + ||+++ ..+++++++++++|++
T Consensus 318 ~g~----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 318 LGF----QLVPGNHP-IIPVMLGDAQLATNMADHLL-QEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp HTC----CBCCCSSS-EEEEEEECHHHHHHHHHHHH-HTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCC----CcCCCCCC-EEEEEeCCHHHHHHHHHHHH-HCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 873 45555554 566544 22 3445554 579999853 2 99986 3488999999999999
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
+++++.
T Consensus 392 ~~~~~~ 397 (399)
T 3tqx_A 392 VGKKLG 397 (399)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 987653
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=256.75 Aligned_cols=327 Identities=11% Similarity=0.047 Sum_probs=233.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC---C---CCCCCCC--CcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---S---EFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++.|+|+.|.+ + +.++.+.+.+...+.. . ....|++ ..+..++++++++++...+ ++++.
T Consensus 27 ~~~i~l~~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~-----~~~v~-- 94 (420)
T 1t3i_A 27 HPLVYLDNAAT-S----QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS-----PREIV-- 94 (420)
T ss_dssp EECEECBTTTC-C----CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEE--
T ss_pred CceEEecCCcc-C----CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCC-----CCeEE--
Confidence 45899999995 1 2333444433333321 0 1234654 4778999999999984312 45777
Q ss_pred ecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCChh----hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 122 QALSGTGACRLFAEFQRR----FHPESHIYFPDPTWSN----HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
+++||++|+.++ +..+ +.+||+|++++|+|.. +...++..|++++.++. ++++.+|+++++++++
T Consensus 95 ~~~g~t~a~~~~--~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~l~--- 167 (420)
T 1t3i_A 95 YTRNATEAINLV--AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL--DEQESFDLEHFKTLLS--- 167 (420)
T ss_dssp EESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB--CTTSSBCHHHHHHHCC---
T ss_pred EcCChHHHHHHH--HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc--CCCCCcCHHHHHHhhC---
Confidence 899999999998 6666 7899999999999988 55667788999999987 3557799999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
+++++|++++|+||||..++ +++|.++|++||+++|+|++|...... . + +... +.++++.|+||.+|
T Consensus 168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~ 234 (420)
T 1t3i_A 168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP-L--D---VQLI----DCDWLVASGHKMCA 234 (420)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHHH----TCSEEEEEGGGTTS
T ss_pred CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc-C--c---hhhc----CCCEEEEehhhhcC
Confidence 57899999999999999998 679999999999999999998754432 1 1 1111 35788999999998
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhc--------------------cccCCChhHHHHHHH-HhCChhhHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARA--------------------MYGSPPVHGILLVAT-ILSDPNLKSLWI 332 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~q~~~~~-~l~~~~l~~~~~ 332 (435)
.+| +||+++ +++ +++.+...... ...+.+.+.+.++.. ++.... .
T Consensus 235 ~~g--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~ 300 (420)
T 1t3i_A 235 PTG--IGFLYG---KEE----ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT-----D 300 (420)
T ss_dssp CTT--CEEEEE---CHH----HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----H
T ss_pred CCc--eEEEEE---chH----HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH-----H
Confidence 777 899974 777 76666543211 112455555555433 343211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC------cceeEec--CCCHHHHHHHhhhccEEEeCC--------
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ------LGMFCFS--GLTPYQVDRLAKEFHIYMTQD-------- 396 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~g~~~~~--~~~~~~~~~ll~~~gI~i~pg-------- 396 (435)
..+++.+++++++++.+.+.|++++ ++.+..+. ++++.|. +.+.+.+.+.++++||.+.++
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 377 (420)
T 1t3i_A 301 LGMENIHNYEVELTHYLWQGLGQIP---QLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLH 377 (420)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTCT---TEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC---CeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHH
Confidence 2356788889999999999998873 24554443 6666553 334555555667899999986
Q ss_pred -----C---cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 397 -----G---RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 397 -----g---Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
. |++++. .+++++++++++|+++++++.+
T Consensus 378 ~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 378 RLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred HhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 2 999864 3788999999999999887653
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=248.54 Aligned_cols=314 Identities=12% Similarity=0.030 Sum_probs=228.8
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCCCCcccH---HHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESISASVST---KMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
+..++++|.| +....+...+.+.++...+.. ...+.|+. .|.+ ++++++++++ +. + +++ ++.||
T Consensus 19 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~-g~------~-~~i--~~~~g 86 (404)
T 1e5e_A 19 KDQFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE-KT------E-ACV--ATSSG 86 (404)
T ss_dssp CCTTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH-TC------S-EEE--EESSH
T ss_pred CCCCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh-CC------C-cEE--EeCCh
Confidence 4457899997 776666666666665554432 22456877 6777 8999999998 32 1 344 68888
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
++|+.++ +.+++.+||+|++++|+|..+.. .++..|++++.++.. |++++++++. +++++++++
T Consensus 87 ~~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~---~~t~~v~l~ 154 (404)
T 1e5e_A 87 MGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK---PNTKIVYFE 154 (404)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC---TTEEEEEEE
T ss_pred HHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC---CCCcEEEEE
Confidence 9999888 67778999999999999999888 678899999888762 7889999987 678999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-c
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKV-KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-G 280 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~-~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G 280 (435)
+|+||||.+++ +++|.++|++ ||+++|+|++|..+.+.. ++ . .+.++++.|+||.++.+|+|+ |
T Consensus 155 ~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~S~sK~~~~~g~ri~G 220 (404)
T 1e5e_A 155 TPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV----D-FGVDVVVHSATKYINGHTDVVAG 220 (404)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCE
T ss_pred CCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc----c-cCCEEEEEcCccccCCCCCCeEE
Confidence 99999999986 6799999999 999999999998877531 11 1 257899999999999999998 9
Q ss_pred EEEEEecChhHHHHHHH-HHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 013839 281 CLSILCVDSKQAAAIRS-QIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG- 357 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 357 (435)
|+++ +++ +++ .+....... ..+.+.+.+.++...+... ....++..++.+.+.+.+++.+
T Consensus 221 ~~~~---~~~----~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~ 283 (404)
T 1e5e_A 221 LICG---KAD----LLQQIRMVGIKDITGSVISPHDAWLITRGLSTL----------NIRMKAESENAMKVAEYLKSHPA 283 (404)
T ss_dssp EEEE---CHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEEE---CHH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH----------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 9974 777 666 676654443 4567888888888888653 1223333445555555555442
Q ss_pred -----CC-----CCccccccC----cceeEecCCC--HHHHHHHhhhccEEEeC--------------------------
Q 013839 358 -----SS-----LNWEHITNQ----LGMFCFSGLT--PYQVDRLAKEFHIYMTQ-------------------------- 395 (435)
Q Consensus 358 -----~~-----~~~~~~~~~----~g~~~~~~~~--~~~~~~ll~~~gI~i~p-------------------------- 395 (435)
.+ .++.+..++ ++++.| .+. .+.+.+++++.||.+..
T Consensus 284 v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~ 362 (404)
T 1e5e_A 284 VEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEER 362 (404)
T ss_dssp EEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHH
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHH
Confidence 00 012333333 788887 553 24567788888875432
Q ss_pred ---C---C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 396 ---D---G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 396 ---g---g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
| + |||++. |++++++++|+++++..
T Consensus 363 ~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 363 EAAGITDGMIRLSVGI---EDADELIADFKQGLDAL 395 (404)
T ss_dssp HHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHHH
Confidence 1 3 999854 89999999999988653
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=246.02 Aligned_cols=321 Identities=14% Similarity=0.101 Sum_probs=224.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-----CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-----EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
+++..|||+.|.+ .+.+.++...+.+.+.+.. + ....|....+..++++++++++ +. ++.+
T Consensus 37 ~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~------~~~i--- 103 (384)
T 1bs0_A 37 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL-GY------SRAL--- 103 (384)
T ss_dssp TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-TC------SEEE---
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh-CC------CcEE---
Confidence 4567999999873 2222333333333333321 1 1122345678899999999998 33 2233
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.+|++++.++ +..++++||.|+++.|+|..+...++..|++++.+|. +|++++++.+++..++++++++
T Consensus 104 ~~~sGt~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 104 LFISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred EeCCcHHHHHHH--HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEE
Confidence 466668998887 6667889999999999999999999999999888763 4789999999854334789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
++||||||.+++ +++|.++|++||+++|+||+|..+.++...... ...+ +. ..+++++|+||.++++| ||
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~-~~-~~di~~~s~sK~~~~~G---G~ 244 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS--CWLQ-KV-KPELLVVTFGKGFGVSG---AA 244 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH--HHHT-TC-CCSEEEEESSSTTSSCC---EE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCch--HHhc-CC-CCcEEEeeccchhhccC---cE
Confidence 999999999998 569999999999999999999766543100111 1122 22 23489999999999777 99
Q ss_pred EEEEecChhHHHHHHHHHHHHhh-c-cccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIAR-A-MYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+++ +++ +++.+..... . ...+++.+.+.++.++++.. .+ +.++.+++++++++.+.+.|++++
T Consensus 245 ~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~g- 310 (384)
T 1bs0_A 245 VLC---SST----VADYLLQFARHLIYSTSMPPAQAQALRASLAVI------RSDEGDARREKLAALITRFRAGVQDLP- 310 (384)
T ss_dssp EEE---CHH----HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH------HSHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred EEe---CHH----HHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHHHHHHhcC-
Confidence 964 788 7666665432 2 12257778777777666432 11 456788889999999999998876
Q ss_pred CCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCC---------C--cEEeccC-CCCcHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQD---------G--RISMAGV-TTGNVNYLANAIHEV 419 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pg---------g--Ris~~~~-~~e~i~~~~~~l~~~ 419 (435)
+.+.+ ..+.++|+.+ +.+.+ +.+ .++||.+.++ + ||+++.. +++++++++++|+++
T Consensus 311 ---~~~~~-~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 311 ---FTLAD-SCSAIQPLIVGDNSRALQLAEKL-RQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ---CEECS-CCSSBCCEEEESHHHHHHHHHHH-HHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ---CcccC-CCCCEEEEEeCCHHHHHHHHHHH-HHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 34443 4455666644 23334 555 4579999864 2 9998643 788999999998764
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=251.89 Aligned_cols=325 Identities=13% Similarity=0.103 Sum_probs=230.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCC------CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFL------ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++.+.|+.+.+ + +.++.+++.+.+.+... ... .|.+..+..++++++++++.... ++++.
T Consensus 22 ~~~i~l~~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~~v~-- 89 (406)
T 1kmj_A 22 LPLAYLDSAAS-A----QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS-----AEELV-- 89 (406)
T ss_dssp EECEECCTTTC-C----CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEE--
T ss_pred CceEEecCCcc-C----CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC-----CCeEE--
Confidence 46899999985 1 23334444443433311 011 13356778999999999984311 45787
Q ss_pred ecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCChhh----HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 122 QALSGTGACRLFAEFQRR----FHPESHIYFPDPTWSNH----HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
+++|+++|+.++ +..+ +.+||+|++++|+|.+. ...++..|++++.++. .+++.+|+++|++++.
T Consensus 90 ~~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~--- 162 (406)
T 1kmj_A 90 FVRGTTEGINLV--ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL--NPDGTLQLETLPTLFD--- 162 (406)
T ss_dssp EESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB--CTTSCBCGGGHHHHCC---
T ss_pred EeCChhHHHHHH--HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec--CCCCCcCHHHHHHHhc---
Confidence 899999999998 6666 78999999999998654 3446678999999987 3457799999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++++|+||||.+++ +++|.++|++||+++|+|++|...... . + +... +.++++.|+||.+|
T Consensus 163 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~-~--~---~~~~----~~d~~~~s~~K~~g 229 (406)
T 1kmj_A 163 EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP-V--D---VQAL----DCDFYVFSGHKLYG 229 (406)
T ss_dssp TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHHH----TCSEEEEEGGGTTS
T ss_pred cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC-C--c---cccc----CCCEEEEEchhccC
Confidence 57899999999999999998 679999999999999999998754321 1 1 1111 46788999999998
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhh---------------------ccccCCChhHHHHHH-HHhCChhhHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIAR---------------------AMYGSPPVHGILLVA-TILSDPNLKSLW 331 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~~~~-~~l~~~~l~~~~ 331 (435)
++| +||+++ +++ +++.+..... ....+.+.+.+.++. .++....
T Consensus 230 ~~G--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----- 295 (406)
T 1kmj_A 230 PTG--IGILYV---KEA----LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS----- 295 (406)
T ss_dssp CTT--CEEEEE---CHH----HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----
T ss_pred CCC--cEEEEE---eHH----HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH-----
Confidence 888 899974 777 7666654321 011234555555443 3443210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEec--CCCHHHHHHHhhhccEEEeCC-----------
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFS--GLTPYQVDRLAKEFHIYMTQD----------- 396 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~--~~~~~~~~~ll~~~gI~i~pg----------- 396 (435)
...+++.+++++++++++.+.|++++ ++.+..+ .++++.|. +.+.+.+.+.+.++||.+.+|
T Consensus 296 ~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~ 372 (406)
T 1kmj_A 296 ALGLNNIAEYEQNLMHYALSQLESVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY 372 (406)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTTST---TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhc
Confidence 12456778889999999999998863 2556666 67777664 335555555667789999863
Q ss_pred ---C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 397 ---G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 ---g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ||+++.. +++++++++++|+++++.+
T Consensus 373 g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 373 NVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 2 9998653 7889999999999987653
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=245.52 Aligned_cols=287 Identities=11% Similarity=0.108 Sum_probs=213.7
Q ss_pred HHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeee
Q 013839 95 TKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERT 169 (435)
Q Consensus 95 ~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~ 169 (435)
.++++++++++ ++.. .++++. +++||++|+.++ +.+++.+||+|++++|+|.+ +...++..|++++.
T Consensus 52 ~~~~~~~~~~la~~~g~~----~~~~v~--~~~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 123 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE----KGEVLL--VPSSGTGIMEAS--IRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVV 123 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS----SSEEEE--ESSCHHHHHHHH--HHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCC----CCcEEE--EeCChHHHHHHH--HHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEE
Confidence 45666666554 2332 134677 899999999998 66668899999999999988 88888899999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. ..++.+|+++|++++.+. ++++++++++|+||||.+.+ +++|.++|++||+++|+|++|..+.+. .
T Consensus 124 v~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~---- 192 (386)
T 2dr1_A 124 LEY--EPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-I---- 192 (386)
T ss_dssp EEC--CTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-C----
T ss_pred Eec--CCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-c----
Confidence 987 335679999999999542 46789999999999999876 679999999999999999998765532 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHH----------------HHHh--hccccCCC
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI----------------QQIA--RAMYGSPP 311 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l----------------~~~~--~~~~~~~~ 311 (435)
++ ...+.++++.|+||.++.++ ++||+++ +++ +++.+ .... .....+++
T Consensus 193 -~~----~~~~~di~~~s~sK~~~~~~-g~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (386)
T 2dr1_A 193 -KF----DKWGLDVVFSSSQKAFGVPP-GLAIGAF---SER----FLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPP 259 (386)
T ss_dssp -CT----TTTTCSEEEEETTSTTCCCS-SCEEEEE---CHH----HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCC
T ss_pred -cc----cccCCcEEEEeccccccCCC-ceEEEEE---CHH----HHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCC
Confidence 11 12246899999999998652 4899974 777 55544 2221 23345678
Q ss_pred hhHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC---cceeEecC----CCHHHH
Q 013839 312 VHGILLVATILSDPNLKSLWID--EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LGMFCFSG----LTPYQV 382 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~~----~~~~~~ 382 (435)
.+.|.++..+|+.. .+ .+++.+++++++++.+.+.|++++ +.+..+. .+.++|+. .+.+.+
T Consensus 260 ~~~~~a~~~~l~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (386)
T 2dr1_A 260 MPQVFGINVALRII------EKMGGKEKWLEMYEKRAKMVREGVREIG----LDILAEPGHESPTITAVLTPPGIKGDEV 329 (386)
T ss_dssp HHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCTTCBCSSEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHH------HHhcCHHHHHHHHHHHHHHHHHHHHHcC----CeeCcCccccCCceEEEEcCCCCCHHHH
Confidence 88888887777532 13 267788899999999999999875 3444443 35566653 345444
Q ss_pred -HHHhhhccEEEeCC------C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 383 -DRLAKEFHIYMTQD------G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 383 -~~ll~~~gI~i~pg------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.++ ++||.+.++ + ||+++. .+++++++++++|+++++++.
T Consensus 330 ~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 330 YEAMR-KRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp HHHHH-HTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5554 569999986 2 999874 488999999999999987765
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=248.62 Aligned_cols=291 Identities=18% Similarity=0.168 Sum_probs=213.1
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHH---
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIW--- 160 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~--- 160 (435)
|.+..+..++++.+++++ +.. +++++ +++||++|+.++ +..+. .+||+|++++|+|+.+...+
T Consensus 40 ~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~ 109 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVL-GVS-----PSEIF--FTSCATESINWI--LKTVAETFEKRKRTIITTPIEHKAVLETMKYL 109 (384)
T ss_dssp HHHHHHHHHHHHHHHHHH-TSC-----GGGEE--EESCHHHHHHHH--HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCC-----CCeEE--EECCHHHHHHHH--HHhhhhhccCCCCEEEECCCCchHHHHHHHHH
Confidence 344567789999999998 322 45777 899999999998 55555 79999999999998886655
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC--ceeeeeccCC
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG--HFPFFDMAYQ 238 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~--~~vi~Deay~ 238 (435)
+..|++++.++. ++++.+|+++|++++. ++++++++++|+||||.+++ +++|.++|++|+ +++|+|++|.
T Consensus 110 ~~~g~~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 110 SMKGFKVKYVPV--DSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp HHTTCEEEECCB--CTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred HhcCCEEEEEcc--CCCCccCHHHHHHHhC---CCCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh
Confidence 678999999987 3457799999999997 57899999999999999998 468999999999 9999999986
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH--HHHHHHH---hhccccCCChh
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI--RSQIQQI---ARAMYGSPPVH 313 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~--~~~l~~~---~~~~~~~~~~~ 313 (435)
+..... + + ...+.++++.|+||.+|++| +||+++ +++ + ...+... ......+++.+
T Consensus 182 -~~~~~~-----~---~-~~~~~di~~~s~sK~~g~~G--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 242 (384)
T 1eg5_A 182 -IGKIPF-----S---L-EKLEVDYASFSAHKFHGPKG--VGITYI---RKG----VPIRPLIHGGGQERGLRSGTQNVP 242 (384)
T ss_dssp -TTTSCC-----C---C-TTTCCSEEEEEGGGGTSCTT--CEEEEE---CTT----SCCCCSBCSSCTTTTTBCSCCCHH
T ss_pred -cCCccc-----C---c-hhcCCCEEEecHHHhcCCCc--eEEEEE---cCC----CccccccccCcccccccCCCCChH
Confidence 221110 1 1 11246789999999999888 799974 655 3 2111110 01234567888
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----c--ceeEecCCCHHHHHHHhh
Q 013839 314 GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----L--GMFCFSGLTPYQVDRLAK 387 (435)
Q Consensus 314 ~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~--g~~~~~~~~~~~~~~ll~ 387 (435)
.+.++..+|... .+++++.+++++++++.+.+.|++.+ +.+..+. . ..|.+.+.+.+.+.+.|.
T Consensus 243 ~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (384)
T 1eg5_A 243 GIVGAARAMEIA------VEELSEAAKHMEKLRSKLVSGLMNLG----AHIITPLEISLPNTLSVSFPNIRGSTLQNLLS 312 (384)
T ss_dssp HHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHTTT----CEECSCTTSBCTTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHhCCCC----eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh
Confidence 888887777642 24577888999999999999998754 3443331 1 122233456555544556
Q ss_pred hccEEEeCC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 388 EFHIYMTQD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 388 ~~gI~i~pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
++||.+.+| + ||+++. .+++++++++++|++++++++.
T Consensus 313 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 313 GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 799999873 2 999863 3889999999999999987653
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=250.32 Aligned_cols=323 Identities=12% Similarity=0.088 Sum_probs=222.9
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--------CCCCCCCCcccHHHHHH-HHHhHcCCCCccccCCCee
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--------EFLESISASVSTKMVEE-SVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~~~v~ 119 (435)
+++.+.|..|.+ .. +.++.+.+.+...+... ....|.+..+..++++. +++++ +. + ++.
T Consensus 6 ~~~~i~ld~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~-~~------~-~v~ 73 (371)
T 2e7j_A 6 TKDFINIDPLQT-GG---KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GC------D-VAR 73 (371)
T ss_dssp --CCEECCHHHH-TC---CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT-TS------S-EEE
T ss_pred CCCcEEeccccc-CC---CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc-CC------C-EEE
Confidence 457889988764 11 33334434333333221 12335567889999999 99997 33 2 566
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee--ecCCCCCCcChHhHHHHhhcCC--CC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH--YYDPDSKSLDFAALMDDIKNAP--DS 195 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~e~l~~~i~~~~--~~ 195 (435)
+++|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.++ . ++++.+|+++|++.+++.. ++
T Consensus 74 --~~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~~ 147 (371)
T 2e7j_A 74 --VTNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRGE 147 (371)
T ss_dssp --EESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTSC
T ss_pred --EeCChHHHHHHH--HHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccCC
Confidence 899999999998 666688999999999999999999999999999998 5 3357899999999987421 36
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++|+||||.+++. ++|.++|++||+++|+|++|..+... . + +..+ +.+++++|+||.++.
T Consensus 148 ~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~~- 213 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP-V--S---LKEI----GADFIVGSGHKSMAA- 213 (371)
T ss_dssp EEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC-C--C---HHHH----TCSEEEEEHHHHSSC-
T ss_pred eEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC-C--C---hhhc----CCCEEEecCCcCCCC-
Confidence 7899999999999999985 69999999999999999998876542 1 1 2111 235899999999884
Q ss_pred CCcccEEEEEecChhHHHHHHHH-HHHHhh--cc-----ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH--HHH
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQ-IQQIAR--AM-----YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI--QRK 345 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~-l~~~~~--~~-----~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~--~~~ 345 (435)
|.|+||+++ +++ +++. +..... .. ..+++...+.++..++... +. +.++++ +++
T Consensus 214 ~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~--~~~~~~~~~~~ 277 (371)
T 2e7j_A 214 SGPIGVMGM---KEE----WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV-------RE--RIKRWDEEVEK 277 (371)
T ss_dssp CSSCEEEEE---CTT----TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-------HH--HGGGHHHHHHH
T ss_pred CCCcEEEEE---ech----hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH-------HH--HHHHHHHHHHH
Confidence 459999974 666 6555 544332 11 2334444444444454321 11 556667 788
Q ss_pred HHHHHHHHHhhCCCCCccccccC--cceeEecCC-CHHHHHHHhhhccEEEeC--------C---C--c-EEecc--CCC
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQ--LGMFCFSGL-TPYQVDRLAKEFHIYMTQ--------D---G--R-ISMAG--VTT 406 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~~-~~~~~~~ll~~~gI~i~p--------g---g--R-is~~~--~~~ 406 (435)
++++.+.|++++ +.+..+. .+.++|+.+ +.+.+.+.+.++||.+.| | + | ++++. .++
T Consensus 278 ~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~ 353 (371)
T 2e7j_A 278 ARRFAAEMEKLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSD 353 (371)
T ss_dssp HHHHHHHHHHTT----CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCH
T ss_pred HHHHHHHHHHcC----cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCH
Confidence 889999998875 4454442 345777766 444454445578999876 2 2 9 99974 488
Q ss_pred CcHHHHHHHHHHHHHhh
Q 013839 407 GNVNYLANAIHEVTRSE 423 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++|+++++++
T Consensus 354 ~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 354 EEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988653
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=243.18 Aligned_cols=321 Identities=12% Similarity=0.044 Sum_probs=211.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.+.. +.|++.+.+++.....+ ...|.+..+.++|++++++++ +.. ++. ++.||++|
T Consensus 3 ~~~i~~~~~~~------~~p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~-------~~~--~~~~gt~a 65 (347)
T 1jg8_A 3 HMMIDLRSDTV------TKPTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKE-------AAL--FVPSGTMG 65 (347)
T ss_dssp --CEECSCGGG------CCCCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCS-------EEE--EESCHHHH
T ss_pred ceEEEeccccC------CCCCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCc-------eEE--EecCcHHH
Confidence 46789999984 23445566665544322 345878889999999999998 331 344 68889999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPS 203 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~ 203 (435)
+.++ +.+++.+||+|++++|+|.... ..+...|++++.+ . .+++.+|++++++++++. .++++++++++
T Consensus 66 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~--~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~ 140 (347)
T 1jg8_A 66 NQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P--GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 140 (347)
T ss_dssp HHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C--EETTEECHHHHHHHSCCSCTTSCCEEEEEEES
T ss_pred HHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-c--CCCCccCHHHHHHHhccccccccCceEEEEec
Confidence 8777 6667889999999999986532 2567789988887 4 234568999999998731 12689999999
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCCc--cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 204 AHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQGF--ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 204 p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
||||| |.+++.+++++|+++|++||+++|+|++|... .+.+. +..++ ....+. ++.|+||.++.+ +|
T Consensus 141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~~~~~---~~~~d~--~~~s~sK~l~~~---~G 210 (347)
T 1jg8_A 141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--PVKEY---AGYADS--VMFCLSKGLCAP---VG 210 (347)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--CHHHH---HHTCSE--EEEESSSTTCCS---SC
T ss_pred cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--ChHHh---cccccE--EEEecccccCCC---ce
Confidence 99999 99999999999999999999999999986321 11111 11122 122232 345899998743 67
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhccccC--CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAMYGS--PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|++ ++ +++ +++.+.+.......+ .+.+.+.++...+.. ..+..++ ..++++.+.+.|++++.
T Consensus 211 ~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~-~~~~~~~l~~~L~~~~~ 274 (347)
T 1jg8_A 211 SVV-VG-DRD----FIERARKARKMLGGGMRQAGVLAAAGIIALTK---------MVDRLKE-DHENARFLALKLKEIGY 274 (347)
T ss_dssp EEE-EE-CHH----HHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH---------SSTTHHH-HHHHHHHHHHHHHHHTC
T ss_pred EEE-Ec-CHH----HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHhcCc
Confidence 543 13 777 666665544322222 233333433334421 1111222 23456777888877753
Q ss_pred CCCccccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 359 SLNWEHITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
. +. ..+..+.|+|+.+ +.+.+ +.+ .++||.+.++| |+++. ..+++++++++++|++++++
T Consensus 275 ~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 275 S--VN-PEDVKTNMVILRTDNLKVNAHGFIEAL-RNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp B--CC-GGGCCSSEEEEECTTSSSCHHHHHHHH-HHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred e--ec-cCCCcceEEEEEcccccCCHHHHHHHH-HHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 11 2233445677643 34444 555 56899999864 99873 44889999999999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=246.00 Aligned_cols=326 Identities=14% Similarity=0.115 Sum_probs=228.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCC---CCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEF---LESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++...|||+.|+| .++..++.+.+.+.+.+.. +.. ..|. ...+..++++++++++ +. ++.+
T Consensus 43 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~------~~~i--- 109 (401)
T 1fc4_A 43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL-GM------EDAI--- 109 (401)
T ss_dssp TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TC------SEEE---
T ss_pred CCccEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh-CC------CcEE---
Confidence 5678999999975 2211233333333333321 111 1232 2567889999999998 33 2234
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC---CcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD---SSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ 198 (435)
++.+|++|+..+ +..++.+||+|+++.|+|..+...++..|++++.++. +|++++++.+++..+ ++++
T Consensus 110 ~~~sGs~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 110 LYSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred EeCChHHHHHHH--HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence 466678888776 6667889999999999998888888889988887753 478899888863211 6789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccC-CCCcccHHHHHHhhhcCCeEEEEecccccc-ccc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFAS-GDLDKDAQAIRIFLEDEHLIGCAQSYAKSM-GLY 275 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~ 275 (435)
+++++|+||||.+++ +++|.++|++||+++|+||+|. ++.+ .+ ....+.... ..+.+++++|+||.+ +.+
T Consensus 181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g--~~~~~~~~~--~~~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG--RGSHEYCDV--MGRVDIITGTLGKALGGAS 253 (401)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS--CCHHHHTTC--TTCCSEEEEESSSTTCSSS
T ss_pred EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC--CccHHHcCC--CcCCcEEEecchhhccCCC
Confidence 999999999999998 6799999999999999999995 7753 22 122222111 124579999999999 655
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhh-c-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIAR-A-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
| ||+++ +++ +++.+..... . ...+++.+.+.++..+++.. +..++.+++++++++.+.+.|
T Consensus 254 g---G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L 316 (401)
T 1fc4_A 254 G---GYTAA---RKE----VVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQM 316 (401)
T ss_dssp C---EEEEE---CHH----HHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred C---EEEEc---CHH----HHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHH
Confidence 4 99964 788 7777766442 1 24577888888887777532 123567788999999999999
Q ss_pred HhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHH
Q 013839 354 EKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIH 417 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~ 417 (435)
++++. .+. +..+.|+|+.+ +.+.+...|.++||.+.++ + ||+++. .+++++++++++|+
T Consensus 317 ~~~g~----~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 317 SAAGF----TLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp HHTTC----CBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHcCC----ccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 98863 444 34566777755 2333433345679999865 1 899863 38899999999999
Q ss_pred HHHHhhh
Q 013839 418 EVTRSEQ 424 (435)
Q Consensus 418 ~~l~~~~ 424 (435)
++++++.
T Consensus 392 ~~~~~~~ 398 (401)
T 1fc4_A 392 RIGKQLG 398 (401)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9987654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=252.54 Aligned_cols=340 Identities=11% Similarity=0.069 Sum_probs=225.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|.+...-|+ .++.+.+.+.+.+.... ...|.+..+..+|++++++++.+ . . ++++. +++|
T Consensus 39 ~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-~---~~~v~--~~~g 110 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG-D-F---AKKTL--LVTT 110 (426)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC-S-S---CEEEE--EESS
T ss_pred CCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc-c-c---ccEEE--EeCc
Confidence 4567899998873112222 23344444444443211 12467778999999999999843 1 1 36787 9999
Q ss_pred chhHHHHHHHHH-HHhCCCCEEEEcCCCChhhH-HHHhhCCCC-------------eeeeeecC---CCCCCcChHhHHH
Q 013839 126 GTGACRLFAEFQ-RRFHPESHIYFPDPTWSNHH-NIWRDAQIP-------------ERTYHYYD---PDSKSLDFAALMD 187 (435)
Q Consensus 126 g~~a~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~-------------~~~v~~~~---~~~~~~d~e~l~~ 187 (435)
|++|+.++..+. .+..+| +|++++|+|.++. ..+...|.+ ++.++... ..++.+|+++|++
T Consensus 111 ~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~ 189 (426)
T 1sff_A 111 GSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR 189 (426)
T ss_dssp HHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHH
Confidence 999999984321 456676 8999999997754 355555543 55565521 0123478999999
Q ss_pred HhhcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 188 DIKNA--PDSSFFLLH-PSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 188 ~i~~~--~~~~~~v~~-~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++++. ++++++|++ ++++| || ..++.+++++|.++|++||+++|+||+|.++.+.+. ...+ +..+...
T Consensus 190 ~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~ 261 (426)
T 1sff_A 190 IFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAP 261 (426)
T ss_dssp HHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCC
T ss_pred HHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCC
Confidence 88731 135566666 56788 99 788999999999999999999999999998776431 1111 1111122
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
.+.||||.++. |+|+||+++ +++ +++.+.......+.+.+.++|.++.++|+... + ....++++
T Consensus 262 di~s~sK~~~~-GlriG~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~------~--~~~~~~~~ 325 (426)
T 1sff_A 262 DLTTFAKSIAG-GFPLAGVTG---RAE----VMDAVAPGGLGGTYAGNPIACVAALEVLKVFE------Q--ENLLQKAN 325 (426)
T ss_dssp SEEEECGGGGT-SSCCEEEEE---EHH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHHHHHH
T ss_pred CEEEEcccccC-CCceEEEEE---cHH----HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH------h--cCHHHHHH
Confidence 24499999996 999999974 677 76666543334456678888888887775321 1 13445566
Q ss_pred HHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC------------HHHH-HHHhhhccEEEeCCC------cEEec
Q 013839 344 RKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT------------PYQV-DRLAKEFHIYMTQDG------RISMA 402 (435)
Q Consensus 344 ~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~------------~~~~-~~ll~~~gI~i~pgg------Ris~~ 402 (435)
++++.+.+.|+.++ .+ .+....+. |+|+|+.+. .+.+ ..+ .++||.+.|++ ||+++
T Consensus 326 ~~~~~l~~~l~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~~~iRi~~~ 402 (426)
T 1sff_A 326 DLGQKLKDGLLAIAEKHP-EIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARA-RDKGLILLSCGPYYNVLRILVP 402 (426)
T ss_dssp HHHHHHHHHHHHHHHTCT-TEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHH-HHTTEECEEESTTSCEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCC-CeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHH-HHCCcEEecCCCCCCEEEEECC
Confidence 66777777776543 22 12233344 667777551 2334 555 46799999873 99875
Q ss_pred -cCCCCcHHHHHHHHHHHHHhh
Q 013839 403 -GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 403 -~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+++++++++++|+++++++
T Consensus 403 ~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 403 LTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 448899999999999998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=247.60 Aligned_cols=327 Identities=12% Similarity=0.058 Sum_probs=228.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-CCCCCCC----CcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-EFLESIS----ASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
+++..|||+.|+| .+...++.+.+.+.+.+.. + ....|.. .....++++.+++++ +. + +.+
T Consensus 62 ~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~------~-~~i-- 128 (427)
T 2w8t_A 62 RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GT------T-GAI-- 128 (427)
T ss_dssp TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TC------S-EEE--
T ss_pred CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CC------C-ceE--
Confidence 4567899999985 2223334444444443321 1 1222333 344589999999998 43 2 333
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLL 200 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~ 200 (435)
++.+|++|+..+ +.+++.+||.|+++.|+|..+...++..|++++.++. +|+++|++.+.+..+ ++++|+
T Consensus 129 ~~~sGs~a~~~a--l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 129 VFSTGYMANLGI--ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp EESCHHHHHHHH--HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred EecCcHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 577888888776 6667889999999999999999999999998887753 489999999985322 689999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++++||||.+.+ +++|.++|++||+++|+||+|..+.++..... +....+ ..+.++++.|+||.+|++|
T Consensus 200 ~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~---~~~~~~~~~~~di~~~s~sK~~g~~g--- 270 (427)
T 2w8t_A 200 LEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG---VYEAQGLEGQIDFVVGTFSKSVGTVG--- 270 (427)
T ss_dssp EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC---HHHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc---hHhhcCCCcCCcEEEecchhhhccCC---
Confidence 9999999999987 67999999999999999999998776521111 222112 2345899999999999777
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhh-c-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIAR-A-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
||+++ +++ +++.+..... . ...+.+...+.++..+|+.. +..++.+++++++++++.+.|++++
T Consensus 271 G~v~~---~~~----l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g 336 (427)
T 2w8t_A 271 GFVVS---NHP----KFEAVRLACRPYIFTASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARALHGGLKAMG 336 (427)
T ss_dssp EEEEE---CCT----TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEe---CHH----HHHHHHHhcccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99964 777 6666655322 1 22345555555555666432 2246678889999999999999886
Q ss_pred CCCCcccc-ccCcceeEecCCC----HH-HHHHHhhhccEEEeCC---------C--cEEecc-CCCCcHHHHHHHHHHH
Q 013839 358 SSLNWEHI-TNQLGMFCFSGLT----PY-QVDRLAKEFHIYMTQD---------G--RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 358 ~~~~~~~~-~~~~g~~~~~~~~----~~-~~~~ll~~~gI~i~pg---------g--Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+.+. ++..|.++|+.+. .. +...|+ ++||.+.++ + ||+++. .+++++++++++|+++
T Consensus 337 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 337 ----FRLGTETCDSAIVAVMLEDQEQAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp ----CEESCSSCCSSEEEEEESSHHHHHHHHHHHH-HTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ----CcccCCCCCCCEEEEEECCHHHHHHHHHHHH-HCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3444 3314456666542 23 345554 569999875 1 888864 3789999999999999
Q ss_pred HHhhh
Q 013839 420 TRSEQ 424 (435)
Q Consensus 420 l~~~~ 424 (435)
+++..
T Consensus 412 l~~~~ 416 (427)
T 2w8t_A 412 GRAVG 416 (427)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 87655
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=245.14 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=210.3
Q ss_pred CCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhC
Q 013839 87 ESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDA 163 (435)
Q Consensus 87 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~ 163 (435)
.|++. ..++++++++++....+. +++ ++. +++||++|+.++ +..++.+||+|++++|+|.. +...++..
T Consensus 60 ~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~--~t~g~t~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 131 (393)
T 1vjo_A 60 HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIA--VSGTGTAAMEAT--IANAVEPGDVVLIGVAGYFGNRLVDMAGRY 131 (393)
T ss_dssp TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEE--ESSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHT
T ss_pred ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEE--EeCchHHHHHHH--HHhccCCCCEEEEEcCChhHHHHHHHHHHc
Confidence 46542 445666666555211111 145 677 899999999998 66678899999999999998 88888999
Q ss_pred CCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 164 QIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 164 g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
|++++.++. .+++.+|+++|++.+++. +++++++++|+||||.+.+ +++|.++|++||+++|+||+|. +...
T Consensus 132 g~~~~~v~~--~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~-~g~~ 203 (393)
T 1vjo_A 132 GADVRTISK--PWGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS-LGGV 203 (393)
T ss_dssp TCEEEEEEC--CTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT-TTTS
T ss_pred CCceEEEec--CCCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc-ccCc
Confidence 999999987 335679999999999831 5778999999999999987 5689999999999999999987 3221
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH----h---------------h
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI----A---------------R 304 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----~---------------~ 304 (435)
+. . + ...+.++++.|+||.++.+| |+||+++ +++ +++.++.. . .
T Consensus 204 ~~-----~---~-~~~~~di~~~s~sK~l~~~~-~~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
T 1vjo_A 204 PI-----F---L-DAWGVDLAYSCSQKGLGCSP-GASPFTM---SSR----AIEKLQRRRTKVANWYLDMNLLGKYWGSE 266 (393)
T ss_dssp CC-----C---T-TTTTCSEEECCSSSTTCSCS-SCEEEEE---CHH----HHHHHHTCSSCCSCSTTCHHHHHHHHSTT
T ss_pred CC-----c---c-cccCccEEEEcCcccccCCC-ceEEEEE---CHH----HHHHHhccCCCCCceecCcHhhhhhhccC
Confidence 11 1 1 22356788999999998777 9999975 777 66666432 0 0
Q ss_pred cccc-CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEec----C
Q 013839 305 AMYG-SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCFS----G 376 (435)
Q Consensus 305 ~~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~~----~ 376 (435)
.... +++.+.|.++..+++... ..++++.+++++++++++.+.|++++ +.+..+++ +.+.++ +
T Consensus 267 ~~~~g~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~ 337 (393)
T 1vjo_A 267 RVYHHTAPINLYYALREALRLIA-----QEGLANCWQRHQKNVEYLWERLEDIG----LSLHVEKEYRLPTLTTVCIPDG 337 (393)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCSSEEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHcC----CcccCCccccCCcEEEEEcCCC
Confidence 1122 678888888888875421 13467888999999999999998875 34544443 233443 3
Q ss_pred CCHHHH-HHHhhhccEEEeCCC--------cEEe-c-cCCCCcHHHHHHHHHHHH
Q 013839 377 LTPYQV-DRLAKEFHIYMTQDG--------RISM-A-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 377 ~~~~~~-~~ll~~~gI~i~pgg--------Ris~-~-~~~~e~i~~~~~~l~~~l 420 (435)
.+.+.+ +.+++++||.+.||. ||++ + ..+++++++++++|++++
T Consensus 338 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 338 VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 355444 555544499999862 9994 3 224557999999998875
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=236.65 Aligned_cols=328 Identities=15% Similarity=0.083 Sum_probs=220.4
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC---C---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---S---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
+++.+++..+.+ .+.+.++.+.+.+.+.+.. + ....|+...+..++|+++++++ +. +++++ +
T Consensus 45 g~~~i~~~~~~~---~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~------~~~i~--~ 112 (401)
T 2bwn_A 45 KQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-QK------EAALV--F 112 (401)
T ss_dssp EEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-TC------SEEEE--E
T ss_pred CCcEEEeeCCCc---ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh-CC------CcEEE--E
Confidence 355688877663 1222333443333333321 1 1223666778999999999998 32 34565 5
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEEe
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLLH 201 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~~ 201 (435)
++ |+.++..+..++..+.+||+|+++.|+|..+...++..|++++.++.. |++++++.+.+.. ++++++++
T Consensus 113 ~s-G~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~ 184 (401)
T 2bwn_A 113 SS-AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAF 184 (401)
T ss_dssp SC-HHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEE
T ss_pred CC-cHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEE
Confidence 44 444655552222224699999999999999999899999999988751 6888888887543 36899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-CCeEEEEecccccccccCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-EHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G~RvG 280 (435)
++|+||||.+++ +++|.++|++||+++|+||+|....++....... ...+. .+.+++++|+||.++++| |
T Consensus 185 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~---~~~~~~~~~~i~~~s~sK~~~~~G---G 255 (401)
T 2bwn_A 185 ESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA---ERDGLMHRIDIFNGTLAKAYGVFG---G 255 (401)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH---HHHTCGGGCSEEEEESSSTTCSCC---E
T ss_pred ecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceee---eccCccccCcEEEeechhhccCCC---C
Confidence 999999999988 6699999999999999999998544432111111 11121 234789999999999888 9
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|+++ +++ +++.+...... ...+.+.+.+.++..++.... ....++.+++++++++++.+.|++++
T Consensus 256 ~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g- 322 (401)
T 2bwn_A 256 YIAA---SAR----MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK-----TAEGQKLRDAQQMHAKVLKMRLKALG- 322 (401)
T ss_dssp EEEE---CHH----HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EEec---CHH----HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHCC-
Confidence 9964 777 66666643321 122344567766666664211 02246778889999999999998876
Q ss_pred CCCccccccCcceeEecCCC----HHHH-HHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGLT----PYQV-DRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~~----~~~~-~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
+.+..+.++ ++|+.+. .+.+ +.+++++||.+.|+ | |++++. .+++++++++++|+++++
T Consensus 323 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 323 ---MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp ---CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred ---CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 345556665 5666552 2334 55555789999753 2 888863 378999999999998875
Q ss_pred h
Q 013839 422 S 422 (435)
Q Consensus 422 ~ 422 (435)
+
T Consensus 399 ~ 399 (401)
T 2bwn_A 399 R 399 (401)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=242.13 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=219.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHH-HHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAE-AKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+||+.|.|... ...+++.+.+++ +.+.. .....| +..+..++++++++++ +. ++++. +++
T Consensus 26 ~g~~~ld~~~~~~~~~--~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g~------~~~v~--~~~ 93 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNS--LGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-WT------EGKVF--FAN 93 (375)
T ss_dssp TCCEEEESSHHHHTCT--TCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-SS------CEEEE--EES
T ss_pred CCCEEEEcCCcccccc--cCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-CC------CCeEE--EeC
Confidence 4568899999986221 121333333333 33321 112357 4467889999999996 33 24677 899
Q ss_pred CchhHHHHHHHHH-HHh---CCC-CEEEEcCCCChhhHHHHhhCCCCee----eeeecCCCCC----CcChHhHHHHhhc
Q 013839 125 SGTGACRLFAEFQ-RRF---HPE-SHIYFPDPTWSNHHNIWRDAQIPER----TYHYYDPDSK----SLDFAALMDDIKN 191 (435)
Q Consensus 125 gg~~a~~~~~~~~-~~~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~v~~~~~~~~----~~d~e~l~~~i~~ 191 (435)
||++|+.++.... .+. .+| |+|++++|+|..+...+...+...+ ..+.. .+. .+|+++|+++++
T Consensus 94 g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~- 170 (375)
T 2eh6_A 94 SGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV--PGFSYAKLNDIDSVYKLLD- 170 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC--SSEEEECTTCHHHHHTTCC-
T ss_pred chHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC--CCceeCCCchHHHHHHHhc-
Confidence 9999999885332 235 788 9999999999887665544333221 01110 111 158999998887
Q ss_pred CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 192 APDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
++++++++++++||||.+ .+.+++++|.++|++||+++|+||+|.++...+. ..++..+ +...+++ |+||
T Consensus 171 --~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~~~~d~~---s~SK 241 (375)
T 2eh6_A 171 --EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE---FYAYQHF-NLKPDVI---ALAK 241 (375)
T ss_dssp --TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE---EECG
T ss_pred --CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---chhhhhc-CCCCCEE---EEcc
Confidence 578999999999999999 5688899999999999999999999987765421 1112111 1112333 7889
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.++ +|+|+||+++ +++ +++.+.........+.+.+.+.++.++|+.. .+.+++++++++.+.
T Consensus 242 ~~~-~g~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~ 303 (375)
T 2eh6_A 242 GLG-GGVPIGAILA---REE----VAQSFTPGSHGSTFGGNPLACRAGTVVVDEV----------EKLLPHVREVGNYFK 303 (375)
T ss_dssp GGG-TTSCCEEEEE---EHH----HHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred ccc-CCCCeEEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 999 7999999974 666 6666654222334466778787776666421 166778888889999
Q ss_pred HHHHhhCCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHH
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEV 419 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~ 419 (435)
+.|++++. ...+ ..|+|+|+.+ ..++.+.+ .++||.+.+++ |++++ ..+++++++++++|+++
T Consensus 304 ~~L~~~~~----~~~~-~~g~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 304 EKLKELGK----GKVK-GRGLMLGLELERECKDYVLKA-LEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHHHHTTS----SEEE-EETTEEEEECSSCCHHHHHHH-HHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----CCce-EEEEEEEEEEcCcHHHHHHHH-HHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99988763 2233 3466777765 24455655 46899999863 99875 34889999999999875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=239.76 Aligned_cols=323 Identities=14% Similarity=0.044 Sum_probs=222.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCC----CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLE----SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
+++..+||+.++|.+. +.++.+++.+.+++.. ..... |+......++++.+++++ +.. ..+
T Consensus 57 ~g~~~ld~~s~~~l~~---~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~-------~~i-- 123 (409)
T 3kki_A 57 ASPDDIILQSNDYLAL---ANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD-------ECL-- 123 (409)
T ss_dssp CCTTSEECCCSCTTCC---TTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCS-------EEE--
T ss_pred CCCceEEeeccCccCC---cCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCC-------eEE--
Confidence 4567889988876333 3444555555555542 11112 232344678999999987 332 222
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.+|++|+..+ +.+++.+||.|+++.|+|..+...+...|++++.++. +|+++|++++.+ .+++++++
T Consensus 124 ~~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~--~~~~~vi~ 192 (409)
T 3kki_A 124 LSQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQR--HGPGIIVV 192 (409)
T ss_dssp EESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHH--HCSCEEEE
T ss_pred EecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHh--cCCeEEEE
Confidence 467778888877 6777899999999999999999999999998887753 489999999974 24689999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
++|+||||.+.+ +++|.++|++||+++|+||+|....++.. .......+....+.++++.|+||.++.+| ||
T Consensus 193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~ 264 (409)
T 3kki_A 193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLLAELGLTREVHFMTASLAKTFAYRA---GA 264 (409)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EE
T ss_pred CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcchhhcCCCCCCCEEEeecchhhCCCc---eE
Confidence 999999999988 77999999999999999999987544311 11112222111245689999999998664 88
Q ss_pred EEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+++ +++ +++.+...... .....+...+.++.+++... +..++.+++++++++++.+.|++++.
T Consensus 265 v~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~- 329 (409)
T 3kki_A 265 IWC---NNE----VNRCVPFISYPAIFSSTLLPYEAAGLETTLEII-------ESADNRRQHLDRMARKLRIGLSQLGL- 329 (409)
T ss_dssp EEE---SSS----GGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEE---CHH----HHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 864 777 66655553321 12234455555555555422 22357888899999999999998863
Q ss_pred CCccccccCcceeEecCC----CHH-HHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 360 LNWEHITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 360 ~~~~~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+. ..+.++|+.+ +.+ +...++ ++||.+.+. | ||+++. .+++++++++++|+++++.
T Consensus 330 ---~~~--~~~~~~~~~~~~~~~~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 330 ---TIR--SESQIIGLETGDERNTEKVRDYLE-SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ---CCC--CSSSEEEEEEESHHHHHHHHHHHH-HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---ccC--CCCCEEEEEeCCHHHHHHHHHHHH-HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 333 3556666644 123 445554 569999642 2 999853 3789999999999999875
Q ss_pred h
Q 013839 423 E 423 (435)
Q Consensus 423 ~ 423 (435)
.
T Consensus 404 ~ 404 (409)
T 3kki_A 404 G 404 (409)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=244.79 Aligned_cols=333 Identities=12% Similarity=0.045 Sum_probs=221.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|++.|.+.+.-++ .++.+.+.+.+++... ....| +.....++++.+++++ +. +++. +++|
T Consensus 37 ~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~-------~~v~--~~~g 104 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTGNGY-TNEPVLRLAKKLIDAT-FA-------DRVF--FCNS 104 (406)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTS-CCHHHHHHHHHHHHHS-SC-------SEEE--EESS
T ss_pred CCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhcccccCCc-CCHHHHHHHHHHHhhC-CC-------CeEE--EeCc
Confidence 5678999999954222332 2344444444444421 11223 3344667888888776 22 3666 8999
Q ss_pred chhHHHHHHHHHHHhC-------CC-CEEEEcCCCChhhHHHHhhCCCCeee----eeecCCCCCC----cChHhHHHHh
Q 013839 126 GTGACRLFAEFQRRFH-------PE-SHIYFPDPTWSNHHNIWRDAQIPERT----YHYYDPDSKS----LDFAALMDDI 189 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~----~d~e~l~~~i 189 (435)
|++|+.++ +..++. +| |+|++++|+|.++.......+..... .+. ..+.. .|+++|++++
T Consensus 105 g~~a~~~a--l~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~l~~~l 180 (406)
T 4adb_A 105 GAEANEAA--LKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPL--PADIRHAAYNDINSASALI 180 (406)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSC--CSSEEEECTTCHHHHHTTC
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCC--CCCceEeCCCcHHHHHHHh
Confidence 99999988 443332 55 99999999999886555544443221 111 01111 4789999888
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDP--TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
. +++++++++ |+||||.++ +.+++++|.++|++||+++|+||+|.++.+.+. ....... +...+++ |
T Consensus 181 ~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~---t 249 (406)
T 4adb_A 181 D---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAYMHY-GVTPDLL---T 249 (406)
T ss_dssp S---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE---E
T ss_pred c---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHHHhc-CCCCCEE---E
Confidence 7 678899888 999999988 999999999999999999999999988876542 1122222 3233344 6
Q ss_pred ccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
|||.++ +|+|+||+++ +++ +++.+.........+.+.+.+.++.++|.... + ++.+++++++++
T Consensus 250 ~sK~~~-~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~~~~ 313 (406)
T 4adb_A 250 TAKALG-GGFPVGALLA---TEE----CARVMTVGTHGTTYGGNPLASAVAGKVLELIN------T--PEMLNGVKQRHD 313 (406)
T ss_dssp ECGGGG-TTSCCEEEEE---CHH----HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS------S--HHHHHHHHHHHH
T ss_pred echhhc-CCCCeEEEEE---cHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH------h--cCHHHHHHHHHH
Confidence 799999 9999999864 888 77777665555567788898888888775321 1 456667777777
Q ss_pred HHHHHHHhhCCC-CCccccccCcceeEecCC------CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHH
Q 013839 348 TLRQNLEKLGSS-LNWEHITNQLGMFCFSGL------TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANA 415 (435)
Q Consensus 348 ~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~------~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~ 415 (435)
.+.+.|++++.. ..+... +..|.++|+.+ +.+.+.+.+.++||.+.|+| |++++ ..+++++++++++
T Consensus 314 ~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~ 392 (406)
T 4adb_A 314 WFVERLNTINHRYGLFSEV-RGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR 392 (406)
T ss_dssp HHHHHHHHHHHHHCCEEEE-EEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 777777665310 001112 22355665532 34444334456799999875 88543 2388999999999
Q ss_pred HHHHHHhhh
Q 013839 416 IHEVTRSEQ 424 (435)
Q Consensus 416 l~~~l~~~~ 424 (435)
|++++++..
T Consensus 393 l~~~l~~~~ 401 (406)
T 4adb_A 393 FAAACEHFV 401 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=238.78 Aligned_cols=337 Identities=12% Similarity=0.047 Sum_probs=222.0
Q ss_pred CCCCeeeeeccee-cCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAY-RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.++++|+.|.+ .|...+..+.....++..++..+ ...|.+..+..+|++++++++ +. ++++ +++||
T Consensus 31 ~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~~~--~~~~g 99 (456)
T 2ez2_A 31 AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMG-DEAYAGSENFYHLERTVQELF-GF-------KHIV--PTHQG 99 (456)
T ss_dssp TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHTTC-CCCSSSCHHHHHHHHHHHHHH-CC-------SEEE--EESSH
T ss_pred CCCCcccCCcccceeeeccccCCccCCHHHHHHhhcc-hhhcccChhHHHHHHHHHHHh-CC-------CcEE--EeCCc
Confidence 5667888888863 34322221111112233444333 345888889999999999998 32 1455 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCC-hhhHHHHhhCCCCeeeeeecCC---C-----CCCcChHhHHHHhhcCC-CCc
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTW-SNHHNIWRDAQIPERTYHYYDP---D-----SKSLDFAALMDDIKNAP-DSS 196 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~---~-----~~~~d~e~l~~~i~~~~-~~~ 196 (435)
++|+.++ +.+++.+|| +++.|+| ..+...+...|++++.+++.+. + ++.+|+++|++++++.. ...
T Consensus 100 t~a~~~a--l~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~ 175 (456)
T 2ez2_A 100 RGAENLL--SQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175 (456)
T ss_dssp HHHHHHH--HHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGE
T ss_pred HHHHHHH--HHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccce
Confidence 9999988 666688999 7889999 7778888999999999887421 1 36889999999997321 124
Q ss_pred EEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC----------ccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 197 FFLLHPSAHN-PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG----------FASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 197 ~~v~~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
+++++++|+| |||.+++.+++++|.++|++||+++|+||+|.. +.+.+ ....++........+++++
T Consensus 176 ~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~~~~ 253 (456)
T 2ez2_A 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADGCTM 253 (456)
T ss_dssp EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSEEEE
T ss_pred eEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCEEEE
Confidence 8999999999 999999999999999999999999999999875 34443 1222221011112234544
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-----ccCCChhHHHH-HHHHhCChhhHHHHHHHH-HHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-----YGSPPVHGILL-VATILSDPNLKSLWIDEV-KIM 338 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~-~~~ 338 (435)
|++|.++ +| |+||++ +.+++ +++.+....... ..+.+.....+ +...+ +.+ +..
T Consensus 254 -S~kk~~~-~~-~gG~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~----------~~~~~~~ 314 (456)
T 2ez2_A 254 -SGKKDCL-VN-IGGFLC--MNDDE----MFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR----------EAMQYEY 314 (456)
T ss_dssp -ETTTTTC-CS-SCEEEE--ESCHH----HHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH----------HHTCHHH
T ss_pred -eCcccCC-CC-ceeEEE--ECCHH----HHHHHHHHHhhccCcccccCcchhHHHHHHHHHH----------HHhHHHH
Confidence 7888765 67 789985 43567 666665543221 12223222222 21222 111 234
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------CH-HH-----HHHHhhhccEEEeC-C--------
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------TP-YQ-----VDRLAKEFHIYMTQ-D-------- 396 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~-~~-----~~~ll~~~gI~i~p-g-------- 396 (435)
.++..++.+.+.+.|++.+ +.+..+.+++++|+.+ +. ++ ...+++++||.+.+ |
T Consensus 315 ~~~~~~~~~~l~~~L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~ 390 (456)
T 2ez2_A 315 IEHRVKQVRYLGDKLKAAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNN 390 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCT
T ss_pred HHHHHHHHHHHHHHHhcCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCc
Confidence 4445556677788887765 3455677788888642 22 23 44554678998643 1
Q ss_pred ----------C--cEEecc--CCCCcHHHHHHHHHHHHHhhh
Q 013839 397 ----------G--RISMAG--VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 ----------g--Ris~~~--~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ ||+++. .+++++++++++|++++++..
T Consensus 391 ~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 391 VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 2 899863 488999999999999987644
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=243.14 Aligned_cols=323 Identities=14% Similarity=0.065 Sum_probs=223.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC---CCC---CCCC-CcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS---EFL---ESIS-ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
++.+.|+.+.+ + +.++.+.+.+.+.+... ... .|+. ..+..++++++++++ +.. ++++. +
T Consensus 15 ~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~ 81 (390)
T 1elu_A 15 ANKTYFNFGGQ----G-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF-NVD-----PNTIT--I 81 (390)
T ss_dssp TTSEECCTTTC----C-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-TSC-----GGGEE--E
T ss_pred CCeEEecCCcc----C-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc-CCC-----HHHEE--E
Confidence 45788888763 1 22223333333333211 011 3544 467899999999998 332 45777 8
Q ss_pred cCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHH----HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNI----WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
++||++|+.++ +..+ +.+||+|+++.|+|..+... ++..|++++.++...++++.+|++.|++.+. ++++
T Consensus 82 ~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~ 156 (390)
T 1elu_A 82 TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTR 156 (390)
T ss_dssp ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEE
T ss_pred eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---CCce
Confidence 99999999988 6666 78999999999999987653 4667999999987422567899999999887 5789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFK----VKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++|+||||.+++ +++|.++|+ +||+++|+|++|...... . . + .....++++.|+||.++
T Consensus 157 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~-~-----~---~-~~~~~d~~~~s~~K~~~ 223 (390)
T 1elu_A 157 LVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-L-----D---F-SRLEVDYYAFTGHKWFA 223 (390)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC-C-----C---T-TTSCCSEEEEESSSTTC
T ss_pred EEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC-C-----C---h-hhcCCCEEEcccccccc
Confidence 9999999999999998 668899999 999999999998642211 1 1 1 12245788999999433
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHh----------------------hccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIA----------------------RAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.|.++||+++ +++ +++.+.... .....+++...+.++..++..-. +
T Consensus 224 -~~~g~G~~~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~--~-- 291 (390)
T 1elu_A 224 -GPAGVGGLYI---HGD----CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ--R-- 291 (390)
T ss_dssp -CCTTCEEEEE---CTT----TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH--H--
T ss_pred -CCCceEEEEE---CHH----hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH--H--
Confidence 5677999974 666 655544311 12233456666666656654211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc---ccCcceeEec---CCCHHHHHHHhhhccEEEeCCC-----cEE
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI---TNQLGMFCFS---GLTPYQVDRLAKEFHIYMTQDG-----RIS 400 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~g~~~~~---~~~~~~~~~ll~~~gI~i~pgg-----Ris 400 (435)
..++++.+++++++++.+.+.|++++ ++.+. .+.++++.|. +.+.+.+.+.|.++||.+.+++ ||+
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis 368 (390)
T 1elu_A 292 QGTAEERYQAICQRSEFLWRGLNQLP---HVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRAC 368 (390)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHST---TEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcC---CcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEe
Confidence 02367788899999999999998873 14454 3457766662 2355545334467899999863 999
Q ss_pred ec-cCCCCcHHHHHHHHHH
Q 013839 401 MA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 401 ~~-~~~~e~i~~~~~~l~~ 418 (435)
+. ..+++++++++++|++
T Consensus 369 ~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 369 CHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CCTTCCHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHh
Confidence 84 3488999999988865
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=238.28 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=209.6
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPER 168 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~ 168 (435)
.....++++.+++++ +.... ++++. +++||++|+. + +..++.+||+|++++|+|.. +...++..|++++
T Consensus 34 ~~~~~~~~~~la~~~-~~~~~---~~~v~--~~~g~t~al~-~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~ 104 (384)
T 3zrp_A 34 VEALAYSLKGLRYVM-GASKN---YQPLI--IPGGGTSAME-S--VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVK 104 (384)
T ss_dssp HHHHHHHHHHHHHHH-TCCTT---SEEEE--EESCHHHHHH-H--GGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHHh-CCCCC---CcEEE--EcCCcHHHHH-H--HHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEE
Confidence 345678899999987 33211 25677 8999999999 7 67778999999999999965 5566678899999
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. +.++.+|++++++++.+ .+++++++++|+||||..++ +++|.++|++||+++|+|++|...... .
T Consensus 105 ~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--- 173 (384)
T 3zrp_A 105 VLRP--SPGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAEE-V--- 173 (384)
T ss_dssp EECC--STTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTSC-C---
T ss_pred EecC--CCCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCcc-c---
Confidence 9987 33567999999999983 26899999999999999987 668999999999999999997543321 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHH-------------HHHh---------hcc
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI-------------QQIA---------RAM 306 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l-------------~~~~---------~~~ 306 (435)
++ ...+.++++.|+||.++ .+.++||+++ +++ +++.+ .... ...
T Consensus 174 --~~----~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 3zrp_A 174 --KA----EEWNVDVYLTASQKALG-SAAGLGLLLL---SPK----ALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAA 239 (384)
T ss_dssp --CT----TTTTCSEEEEETTSTTC-CCSSEEEEEE---CHH----HHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCC
T ss_pred --cc----cccCCCEEEecCccccc-CCCceEEEEE---CHH----HHHHhcCCCCCCcccccHHHHHHHHHhhcccCCC
Confidence 01 12245789999999885 2344899974 777 44444 1111 111
Q ss_pred c-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----cceeEecCC---C
Q 013839 307 Y-GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----LGMFCFSGL---T 378 (435)
Q Consensus 307 ~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~---~ 378 (435)
. .+++...+.++..++.... ...+++.+++++++++++.+.|++++ +.+..+. .+.++|+.+ +
T Consensus 240 ~~g~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ 310 (384)
T 3zrp_A 240 YFATPPVHVILQLAEAFRLIE-----KEGIENRIKRHTMVASAIRAGLEALG----LEIVARRPESYSNTVTGVILKVAD 310 (384)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSCSSGGGBCSSEEEEECSSSC
T ss_pred cCCCCCHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHCC----CeEccCcccccCccEEEEECCCCC
Confidence 1 2555566666655654221 13367888999999999999999885 3444444 455555533 4
Q ss_pred HHHHHHHhhhccEEEeCCC-------cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 379 PYQVDRLAKEFHIYMTQDG-------RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pgg-------Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+.+.|.++||.+.+|. ||++.. .+++++++++++|++++++..
T Consensus 311 ~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 311 PQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp HHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 5555444456799999874 999753 378999999999999998765
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=233.68 Aligned_cols=329 Identities=12% Similarity=0.070 Sum_probs=220.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+..|+|+.+.+ + +.+ +.+.+++..... .|.+..|..++++++++++....+ ..++++. +++||+
T Consensus 11 ~~p~~i~l~~~~~----~-~~~-~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~--~~~g~t 76 (359)
T 1svv_A 11 AKPKPYSFVNDYS----V-GMH-PKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDADVH--FISGGT 76 (359)
T ss_dssp ----CEECSCSCS----S-CCC-HHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEE--EESCHH
T ss_pred CCCeeEEecCCCc----C-CCC-HHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCccEE--EeCCch
Confidence 3467899998663 2 233 334444443322 266666777777777777622111 1156777 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHH--HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC----CCCcEEEEe
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHN--IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA----PDSSFFLLH 201 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~v~~ 201 (435)
+|+.++ +..++.+||+|++++|+|..+.. .++..|++++.++. + ++.+|+++|++.+++. ..+++++++
T Consensus 77 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 77 QTNLIA--CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC-P--DGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHH--HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC-T--TSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred HHHHHH--HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeC-C--CCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 999998 66667899999999999998877 47888999999986 2 5789999999999742 113789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC--CCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG--DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++| ||||.+++.+++++|.++|++||+++|+||+|.++..+ +.......+.. ...+++.|.+|..+. .++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~s~~K~g~~--~~~ 223 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR-----LTDMFYIGATKAGGM--FGE 223 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH-----HCSEEEEECTTTTCS--SCE
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhh-----cCCEEEEecccCCCC--Cce
Confidence 998 89999999999999999999999999999998544222 11111111111 124677889997542 456
Q ss_pred cEEEEEecChhHHHHHHHHHHHHh--hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIA--RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
|++++ +++ +++.+.... .......+......+..++.+. ..++.+++++++++++.+.|+..+
T Consensus 224 g~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~~~~ 288 (359)
T 1svv_A 224 ALIIL---NDA----LKPNARHLIKQRGALMAKGWLLGIQFEVLMKDN--------LFFELGAHSNKMAAILKAGLEACG 288 (359)
T ss_dssp EEEEC---SGG----GCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEE---ccc----HHHHHHHHHhcCCcccccchhhHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHhccCC
Confidence 88853 777 555554432 1111111222222334455542 245677888889999999994333
Q ss_pred CCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeC---CC----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 358 SSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQ---DG----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~p---gg----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+.+..+.+++|+|+.+..++.+.+++++||.+.+ .+ ||+++. .+++++++++++|++++++
T Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 289 ----IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp ----CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ----eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 5566677888999888777777776655999854 22 998643 3789999999999988754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=237.58 Aligned_cols=289 Identities=9% Similarity=0.006 Sum_probs=206.3
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
..+..++++.+++++ +.. +++++ +|+||++|+.++ +..++.+||+|++++|+|..+ ...++..|++++
T Consensus 41 ~~~~~~l~~~la~~~-g~~-----~~~v~--~t~g~t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 110 (392)
T 2z9v_A 41 QLLYEKVVDKAQKAM-RLS-----NKPVI--LHGEPVLGLEAA--AASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLL 110 (392)
T ss_dssp HHHHHHHHHHHHHHT-TCS-----SCCEE--ESSCTHHHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHHHh-CCC-----CCEEE--EeCCchHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceE
Confidence 446789999999997 332 46787 899999999998 666688999999999999775 344556799999
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. + +++.+|+++|++++++. ++++++++++|+||||..++ +++|.++|++||+++|+|++|...... .
T Consensus 111 ~v~~-~-~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~-~--- 180 (392)
T 2z9v_A 111 EIEV-P-YNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGGMK-T--- 180 (392)
T ss_dssp EEEC-C-TTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBS-C---
T ss_pred EeeC-C-CCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCCcc-c---
Confidence 9987 2 34579999999999642 46789999999999999987 569999999999999999998632211 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHh--------------------hccc
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA--------------------RAMY 307 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~ 307 (435)
++. . .+.++++.|+||.+ +.+| +||+++ +++ +++.++... ....
T Consensus 181 --~~~---~-~~~d~~~~s~sK~~~~~~g--~G~l~~---~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (392)
T 2z9v_A 181 --HPE---D-CKADIYVTGPNKCLGAPPG--LTMMGV---SER----AWAKMKANPLAPRASMLSIVDWENAWSRDKPFP 245 (392)
T ss_dssp --CGG---G-GTCSEEEECSSSTTCCCSC--CEEEEE---CHH----HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCS
T ss_pred --ccc---c-ccceEEEecCcccccCCCc--eeEEEE---CHH----HHHHhhhccCCCCceeccHHHHHhhhcccCCCC
Confidence 111 1 13568899999964 4455 599974 777 666665311 1112
Q ss_pred cCCChhHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cC---cceeEecC----CC
Q 013839 308 GSPPVHGILLVATILSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQ---LGMFCFSG----LT 378 (435)
Q Consensus 308 ~~~~~~~q~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~---~g~~~~~~----~~ 378 (435)
.+++...+.++..++... .+. +++.+++++++++++.+.|++++. .+.. +. .+.++|+. .+
T Consensus 246 ~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 315 (392)
T 2z9v_A 246 FTPSVSEINGLDVALDLY------LNEGPEAVWARHALTAKAMRAGVTAMGL----SVWAASDSIASPTTTAVRTPDGVD 315 (392)
T ss_dssp SCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTTC----CBSSSSGGGBCTTEEEEECCTTCC
T ss_pred CCCCHHHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHHcCC----eeccCCccccCCceEEEECCCCCC
Confidence 334555555555555421 233 677888999999999999988753 3433 21 34455543 34
Q ss_pred HHHH-HHHhhhccEEEeCCC--------cEEe-c-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 379 PYQV-DRLAKEFHIYMTQDG--------RISM-A-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ~~~~-~~ll~~~gI~i~pgg--------Ris~-~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+ +.+++++||.+.+|. |+++ + ..+++++++++++|+++++++.
T Consensus 316 ~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 316 EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 4444 555443499999862 9994 5 4589999999999999987654
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=238.64 Aligned_cols=289 Identities=10% Similarity=0.090 Sum_probs=209.9
Q ss_pred ccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCCCeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQIPERT 169 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~ 169 (435)
...++|+++++++. .. ++ ++. +++||++|+.++ +..++.+||+|++++|+|..+. ..++..|++++.
T Consensus 52 ~~~~l~~~la~~~~-~~-----~~~~v~--~~~g~t~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 121 (396)
T 2ch1_A 52 TMDEVKDGLRYIFQ-TE-----NRATMC--VSGSAHAGMEAM--LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRT 121 (396)
T ss_dssp HHHHHHHHHHHHHT-CC-----CSCEEE--ESSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhC-CC-----CCcEEE--ECCcHHHHHHHH--HHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEE
Confidence 37899999999983 32 34 677 899999999998 6667889999999999999884 467888999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. ++++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|. +...+.
T Consensus 122 v~~--~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~-~g~~~~---- 189 (396)
T 2ch1_A 122 IEG--PPDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS-LCGVPF---- 189 (396)
T ss_dssp EEC--CTTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC----
T ss_pred ecC--CCCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc-ccCCcc----
Confidence 987 345779999999999731 5788999999999999998 5689999999999999999986 221111
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH-----------------h------hcc
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-----------------A------RAM 306 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-----------------~------~~~ 306 (435)
++ ...+..+++.|++|.++ .+.++||+++ +++ +++.+... . ...
T Consensus 190 -~~----~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
T 2ch1_A 190 -YM----DKWEIDAVYTGAQKVLG-APPGITPISI---SPK----ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRY 256 (396)
T ss_dssp -CT----TTTTCCEEECCCC-CCC-CCSSCEEEEE---CHH----HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred -ch----hhcCcCEEEEcCCcccc-CCCCeEEEEE---CHH----HHHhhhhccCcccceEechHHHHHhhhhhcccCCC
Confidence 11 11123566789999765 3345688864 777 66555431 0 112
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcc----eeEec----CCC
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLG----MFCFS----GLT 378 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g----~~~~~----~~~ 378 (435)
..+++...+.++..++... ..+++++.+++++++++.+.+.|+++| +.+..++++ .++++ +.+
T Consensus 257 ~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (396)
T 2ch1_A 257 HHTVASNLIFALREALAQI-----AEEGLENQIKRRIECAQILYEGLGKMG----LDIFVKDPRHRLPTVTGIMIPKGVD 327 (396)
T ss_dssp CCCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHHT----CCBSSCSGGGBCTTEEEEECCTTCC
T ss_pred CCCCcHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHCC----CeeccCCccccCCceEEEEcCCCCC
Confidence 2456777777777777532 124567888899999999999999886 345555442 24544 335
Q ss_pred HHHH-HHHhhhccEEEeCC------C--cEEe-c-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 379 PYQV-DRLAKEFHIYMTQD------G--RISM-A-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 379 ~~~~-~~ll~~~gI~i~pg------g--Ris~-~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+.+ +.|++++||.+.+| + ||++ + ..+++++++++++|++++++...
T Consensus 328 ~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 328 WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 5544 56655569999985 2 9998 3 33778899999999999987653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=237.34 Aligned_cols=322 Identities=12% Similarity=0.085 Sum_probs=222.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC--CcccHHHHHHHHHhHcCCCCccccCC-CeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~ 124 (435)
..+..+++..|.. + +++.+.+++...... .|.+ ..+..++++.+++++ +.. ++ ++. +++
T Consensus 16 ~~~~~~~~~~g~~------~-~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~-g~~-----~~~~i~--~~~ 77 (393)
T 2huf_A 16 VTPNKLLMGPGPS------N-APQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYLF-QTN-----NIATFC--LSA 77 (393)
T ss_dssp CCCCCEECSSSCC------C-CCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHHH-TCC-----CSEEEE--ESS
T ss_pred CCCCeEEecCCCC------C-CCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHHh-CCC-----CCcEEE--EcC
Confidence 4456677766642 2 333333333332222 2322 356789999999998 332 22 676 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEEe
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLLH 201 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~ 201 (435)
||++|+.++ +..++.+||+|++++|+|..+ ...++..|++++.+++ + +++.+|+++++++++ + +++++++
T Consensus 78 g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i~---~~~~~~v~~ 150 (393)
T 2huf_A 78 SGHGGMEAT--LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKS-K-VGQSLSLDEIRDALL---IHKPSVLFL 150 (393)
T ss_dssp CHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC-C-TTCCCCHHHHHHHHH---HHCCSEEEE
T ss_pred cHHHHHHHH--HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeC-C-CCCCCCHHHHHHHHh---ccCCcEEEE
Confidence 999999998 666688999999999999874 2345668999999987 2 346799999999997 4 6788999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc-ccccCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS-MGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~g~~G~RvG 280 (435)
++|+||||..++ +++|.++|++||+++|+|+++. +..... .+ ...+.++++.|+||. +|++|+ |
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~~-----~~----~~~~~d~~~~s~sK~l~g~~G~--G 215 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAPM-----FM----DRWEIDAMYTGSQKVLGAPPGI--T 215 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC-----CT----TTTTCSEEECCSSSTTCCCSSC--E
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCCc-----ch----hhcCccEEEECCCcccccCCCe--E
Confidence 999999999988 5699999999999999999964 221111 11 112467889999997 567776 9
Q ss_pred EEEEEecChhHHHHHHHHHHHHh----h-------------------ccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIA----R-------------------AMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~----~-------------------~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
|+++ +++ +++.+.... . ....+++...+.++..++.... ...+++
T Consensus 216 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~ 283 (393)
T 2huf_A 216 PVSF---SHR----AVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC-----EEGLPA 283 (393)
T ss_dssp EEEE---CHH----HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH-----HHCHHH
T ss_pred EEEE---CHH----HHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH-----HhCHHH
Confidence 9964 777 777666531 0 0112455555555555664221 123677
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEec----CCCHHHH-HHHhhhccEEEeCC------C--cEEe
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFS----GLTPYQV-DRLAKEFHIYMTQD------G--RISM 401 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~----~~~~~~~-~~ll~~~gI~i~pg------g--Ris~ 401 (435)
.+++++++++++.+.|++++. .+..+ ..++++++ +.+.+.+ ..|++++||.+.+| + ||++
T Consensus 284 ~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~ 359 (393)
T 2huf_A 284 LIARHEDCAKRLYRGLQDAGF----ELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGL 359 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----CBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCC----eeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEc
Confidence 888899999999999988753 34443 23445544 3345444 55655569999986 2 9998
Q ss_pred -cc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 402 -AG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 402 -~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+. .+++++++++++|++++++++.
T Consensus 360 ~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 360 MGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 53 2577899999999999987653
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=233.54 Aligned_cols=305 Identities=16% Similarity=0.086 Sum_probs=210.6
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEE
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIY 147 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vl 147 (435)
.+++.+.+++...... ...|....+..++++.+++++ +.. +++++ +++||++|+.++ +.+++.+||+|+
T Consensus 11 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~-g~~-----~~~i~--~~~g~t~a~~~~--~~~~~~~gd~vl 79 (352)
T 1iug_A 11 RLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAF-RTE-----GEVLI--LTGSGTLAMEAL--VKNLFAPGERVL 79 (352)
T ss_dssp CCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHH-TCS-----SEEEE--EESCHHHHHHHH--HHHHCCTTCEEE
T ss_pred CCCHHHHHHhccCCCC-ccCHHHHHHHHHHHHHHHHHh-CCC-----CceEE--EcCchHHHHHHH--HHhccCCCCeEE
Confidence 3344444444443322 122222346789999999998 332 35677 899999999998 666788999999
Q ss_pred EcCCCChhhH--HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 013839 148 FPDPTWSNHH--NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFK 225 (435)
Q Consensus 148 v~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~ 225 (435)
+++|+|+.+. ..++..|++++.++. ++++.+|++++++ ++++++++++|+||||.+++ +++|.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 148 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDVAK------EGYAGLLLVHSETSTGALAD---LPALARAFK 148 (352)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTSCC------SSCSEEEEESEETTTTEECC---HHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHhc------cCCcEEEEEEecCCcceecC---HHHHHHHHH
Confidence 9999998865 445668999999987 3345788888765 35678999999999999987 569999999
Q ss_pred hc--CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc-ccccCCcccEEEEEecChhHHHHHHHH----
Q 013839 226 VK--GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS-MGLYGHRVGCLSILCVDSKQAAAIRSQ---- 298 (435)
Q Consensus 226 ~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~g~~G~RvG~~~~~~~~~~~~~~~~~~---- 298 (435)
+| |+++|+|++|.... ... .+ ...+.++++.|+||. ++.+| +||+++ +++ +++.
T Consensus 149 ~~~~~~~li~D~a~~~~~-~~~-----~~----~~~~~d~~~~s~~K~~~~~~g--~G~~~~---~~~----~~~~~~~~ 209 (352)
T 1iug_A 149 EKNPEGLVGADMVTSLLV-GEV-----AL----EAMGVDAAASGSQKGLMCPPG--LGFVAL---SPR----ALERLKPR 209 (352)
T ss_dssp HHCTTCEEEEECTTTBTT-BCC-----CS----GGGTCSEEEEESSSTTCCCSC--EEEEEE---CHH----HHHTCCCC
T ss_pred hhCCCCEEEEECCccccC-cce-----ec----cccCeeEEEecCcccccCCCc--eeEEEE---CHH----HHHHhhCC
Confidence 99 99999999975221 111 11 111356789999995 45444 799964 776 4332
Q ss_pred -----HH----HH-hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 299 -----IQ----QI-ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 299 -----l~----~~-~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
+. .. ......+++...+.++..++.... +++++.+++++++++++.+.|++++ +.+..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 279 (352)
T 1iug_A 210 GYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL------PRLEEHLALKAWQNALLYGVGEEGG----LRPVPKR 279 (352)
T ss_dssp SSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG------GGHHHHHHHHHHHHHHHHHHHHHTT----CEESCSS
T ss_pred CceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCC----Ccccccc
Confidence 11 11 122234566676766666664321 2367788889999999999998875 4455553
Q ss_pred -cceeEecC----CCHHHHHHHhhhccEEEeCC------C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 369 -LGMFCFSG----LTPYQVDRLAKEFHIYMTQD------G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 -~g~~~~~~----~~~~~~~~ll~~~gI~i~pg------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
.+.++|+. .+.+.+.+.|.++||.+.++ + ||+++.. +++++++++++|+++++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 280 FSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp BCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 55566653 34555544445679999976 2 9998643 6799999999999988754
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=241.05 Aligned_cols=324 Identities=12% Similarity=0.093 Sum_probs=215.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|...+.-++ .++++.+.+.+.+... ....| +.....++++.+++++ + .+++. +++|
T Consensus 38 ~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~g 105 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT-F-------GGKVF--FANT 105 (397)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT-T-------SCEEE--EESS
T ss_pred CCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc-C-------CCeEE--EeCC
Confidence 4567899998843122222 2333433333333211 01123 2234567777777776 3 24677 8999
Q ss_pred chhHHHHHHHHHHHhC------C-CCEEEEcCCCChhh-HHHHhhCCCC------------eeeeeecCCCCCCcChHhH
Q 013839 126 GTGACRLFAEFQRRFH------P-ESHIYFPDPTWSNH-HNIWRDAQIP------------ERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~------~-gd~Vlv~~p~y~~~-~~~~~~~g~~------------~~~v~~~~~~~~~~d~e~l 185 (435)
|++|+.++. ..+.. + +++|++++|+|.+. ...+...|.+ ++.++. .|+++|
T Consensus 106 g~~a~~~al--~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l 176 (397)
T 2ord_A 106 GTEANEAAI--KIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDL 176 (397)
T ss_dssp HHHHHHHHH--HHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHH--HHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHH
Confidence 999998884 33332 5 47899999999654 4466677765 333432 289999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
+++++ ++++++++++|+||||. +++.+++++|.++|++||+++|+||+|.++.+.+. ..++..+ +...+++
T Consensus 177 ~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~- 248 (397)
T 2ord_A 177 RRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKY-GVVPDVL- 248 (397)
T ss_dssp HHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE-
T ss_pred HHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhh-CCCCCee-
Confidence 99987 57899999999999999 99999999999999999999999999987766431 1222222 2112222
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
|+||.++ +|+|+||+++ +++ ++ .+.........+.+.+.+.++.++|+... + ++.++++++
T Consensus 249 --s~sK~~~-~G~r~G~~~~---~~~----~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~ 309 (397)
T 2ord_A 249 --TTAKGLG-GGVPIGAVIV---NER----AN-VLEPGDHGTTFGGNPLACRAGVTVIKELT------K--EGFLEEVEE 309 (397)
T ss_dssp --EECGGGG-TTSCCEEEEE---CST----TC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHT------S--TTHHHHHHH
T ss_pred --eeccccC-CCcCeEEEEE---chH----hc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHH------h--CCHHHHHHH
Confidence 7899999 8999999974 666 54 44432233455678888888887775321 1 356677888
Q ss_pred HHHHHHHHHHhh--CCCCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcHHHH
Q 013839 345 KRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNVNYL 412 (435)
Q Consensus 345 ~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~ 412 (435)
+++.+.+.|+++ +.+ .+....+. |.|+|+.+ +.+.+ +.+ .++||.+.|++ ||+++ ..++++++++
T Consensus 310 ~~~~l~~~L~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~ 386 (397)
T 2ord_A 310 KGNYLMKKLQEMKEEYD-VVADVRGM-GLMIGIQFREEVSNREVATKC-FENKLLVVPAGNNTIRFLPPLTVEYGEIDLA 386 (397)
T ss_dssp HHHHHHHHHHHHHHHCT-TEEEEEEE-TTEEEEEECTTSCHHHHHHHH-HHTTEECEEETTTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEEE-eEEEEEEECChHHHHHHHHHH-HHCCCEEccCCCCEEEEECCcCCCHHHHHHH
Confidence 888888888776 232 11112333 44555543 34444 555 55899999874 88854 3488999999
Q ss_pred HHHHHHHHHh
Q 013839 413 ANAIHEVTRS 422 (435)
Q Consensus 413 ~~~l~~~l~~ 422 (435)
+++|++++++
T Consensus 387 ~~~l~~~l~~ 396 (397)
T 2ord_A 387 VETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999988753
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=238.95 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=205.3
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHH---hhCCC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIW---RDAQI 165 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~---~~~g~ 165 (435)
+..++++.+++++ +.. ++++. +++||++|+.++ +.++. .+||+|+++.|+|+.+...+ ...|+
T Consensus 69 ~~~~l~~~la~~~-~~~-----~~~v~--~~~ggt~a~~~a--~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 138 (423)
T 3lvm_A 69 AVDIARNQIADLV-GAD-----PREIV--FTSGATESDNLA--IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF 138 (423)
T ss_dssp HHHHHHHHHHHHH-TCC-----GGGEE--EESSHHHHHHHH--HHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCC-----CCeEE--EeCChHHHHHHH--HHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCC
Confidence 4478888888887 332 45787 899999999988 44444 37999999999999987766 45599
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. .+++.+|+++|++++. ++++++++++|+||||.+++ +++|.++|++||+++|+|++|...... .
T Consensus 139 ~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~ 209 (423)
T 3lvm_A 139 EVTYLAP--QRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I 209 (423)
T ss_dssp EEEEECC--CTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C
T ss_pred EEEEecc--CCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c
Confidence 9999987 3367889999999997 67899999999999999998 568999999999999999997543221 0
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-------ccccCCChhHHHHH
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-------AMYGSPPVHGILLV 318 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~q~~~ 318 (435)
. ....+.++++.|+||.+|.+| +||+++ +++ +...+..... ....+++...+.++
T Consensus 210 -----~----~~~~~~di~~~s~sK~~g~~g--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (423)
T 3lvm_A 210 -----D----LSQLKVDLMSFSGHKIYGPKG--IGALYV---RRK----PRVRIEAQMHGGGHERGMRSGTLPVHQIVGM 271 (423)
T ss_dssp -----C----TTTSCCSEEEEESTTTTSCSS--CEEEEE---CBT----TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHH
T ss_pred -----C----hhhcCCCEEEechHHhcCCCC--eEEEEE---ecc----ccCCCCccccCCcccccccCCCCCHHHHHHH
Confidence 0 112245788999999988666 899974 555 4333333211 12334556666666
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc----ceeE-e-cCCCHHHHHHHhhhccEE
Q 013839 319 ATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL----GMFC-F-SGLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 319 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----g~~~-~-~~~~~~~~~~ll~~~gI~ 392 (435)
..++... .+.+++.+++++++++.+.+.|++++. +.+..+.+ +++. + .+.+.+.+...|.+ |.
T Consensus 272 ~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~ 340 (423)
T 3lvm_A 272 GEAYRIA------KEEMATEMERLRGLRNRLWNGIKDIEE---VYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LA 340 (423)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EE
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--he
Confidence 5555432 244788889999999999999987732 44444432 2222 2 24566666656655 88
Q ss_pred EeCC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 393 MTQD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 393 i~pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.+| + ||+++. .+++++++++++|+++++++.+
T Consensus 341 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 341 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8764 3 899863 3678999999999999987654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=237.73 Aligned_cols=288 Identities=11% Similarity=0.036 Sum_probs=198.0
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCC-------------CCEEEEcCCCChhhHHHHhh
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP-------------ESHIYFPDPTWSNHHNIWRD 162 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~ 162 (435)
++++.+++++ +.. +++++ +++||++|+.++ +..+..+ ||+|+++.|+|..+...++.
T Consensus 73 ~l~~~la~~~-~~~-----~~~i~--~~~ggt~a~~~~--~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~ 142 (397)
T 3f9t_A 73 KAVALLGSLL-NNK-----DAYGH--IVSGGTEANLMA--LRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM 142 (397)
T ss_dssp HHHHHHHHHT-TCT-----TCEEE--EESCHHHHHHHH--HHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH
T ss_pred HHHHHHHHHh-CCC-----CCCEE--EecCcHHHHHHH--HHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH
Confidence 3445555554 322 55777 899999999888 4444444 99999999999999999999
Q ss_pred CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 163 AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 163 ~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.|++++.++. ++++.+|+++|++++.+. +++++++++|+||||.+.+ +++|.++|++||+++|+|++|..+..
T Consensus 143 ~g~~~~~v~~--~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~ 215 (397)
T 3f9t_A 143 MDLEYIYAPI--KEDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVI 215 (397)
T ss_dssp HTCEEEEECB--CTTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTG
T ss_pred cCceeEEEee--CCCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchhh
Confidence 9999999998 345789999999999831 6788999999999999876 66899999999999999999976543
Q ss_pred CCCcccHHHH-----HHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcccc---------
Q 013839 243 GDLDKDAQAI-----RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG--------- 308 (435)
Q Consensus 243 ~~~~~~~~~~-----~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 308 (435)
+.... .... ...... +.++++.|++|.++ +|.|+||++ +.++. +.+.+.........
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 3f9t_A 216 PFLDD-KYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGIL--FKDIG----YKRYLDVDAPYLTETRQATILGT 286 (397)
T ss_dssp GGCCG-GGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEE--ESSGG----GGGGTCEECTTSSSSEECSSCSS
T ss_pred hhccc-ccccccccccccccc-cCCeEEEccccccC-CCCCceEEE--EeCHH----HHHhhccCCccccCCCccccccc
Confidence 21100 0000 000112 45688899999876 778999996 33555 44333221111111
Q ss_pred --CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHH
Q 013839 309 --SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRL 385 (435)
Q Consensus 309 --~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~l 385 (435)
+.+.+.+.++...+.. ...++..++++++++++.+.|++++. ....+..+.++|+.. +.+.+.+.
T Consensus 287 ~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 354 (397)
T 3f9t_A 287 RVGFGGACTYAVLRYLGR--------EGQRKIVNECMENTLYLYKKLKENNF----KPVIEPILNIVAIEDEDYKEVCKK 354 (397)
T ss_dssp CCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTC----CBSSCCSSSEEEEECTTHHHHHHH
T ss_pred cccchHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHCCC----EEEcCCCccEEEEEeCCHHHHHHH
Confidence 1233444444444421 44567778888999999999998863 333333344555544 44445444
Q ss_pred hhhccEEEeCCC-----cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 386 AKEFHIYMTQDG-----RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 386 l~~~gI~i~pgg-----Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
+.++||.+.+++ ||+++. .+++++++++++|+++++
T Consensus 355 l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 355 LRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 456799999874 999863 378999999999988764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=233.32 Aligned_cols=289 Identities=14% Similarity=0.071 Sum_probs=206.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChh-hHHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSN-HHNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~ 169 (435)
.+..++++++++++. .. ..+++++ +++||++|+.++ +..++.+||+|++++ |+|+. +...+...|++++.
T Consensus 37 ~~~~~l~~~la~~~g-~~---~~~~~v~--~~~g~t~a~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 108 (366)
T 1m32_A 37 GVVEQIRQQLTALAT-AS---EGYTSVL--LQGSGSYAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 108 (366)
T ss_dssp TTHHHHHHHHHHHHC-SS---SSEEEEE--EESCHHHHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhC-CC---CcCcEEE--EecChHHHHHHH--HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEE
Confidence 678899999999984 21 1124677 899999999998 666678999988776 55553 56677888999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .+++.+|+++|++++++. .+++++++++|+||||.+++ +++|.++|++||+++|+|++|...... .
T Consensus 109 v~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~---- 177 (366)
T 1m32_A 109 YDC--GEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M---- 177 (366)
T ss_dssp EEC--CTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C----
T ss_pred EeC--CCCCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c----
Confidence 987 335679999999999853 24688889999999999998 569999999999999999998643321 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh------------------hccccCCC
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA------------------RAMYGSPP 311 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~ 311 (435)
++ ...+.++++.|+||.++ .+.++||+++ +++ +++.+.... .....+++
T Consensus 178 -~~----~~~~~di~~~s~~K~~~-~~~g~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (366)
T 1m32_A 178 -DI----AALHIDYLISSANKCIQ-GVPGFAFVIA---REQ----KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 244 (366)
T ss_dssp -CT----TTTTCSEEEEESSSTTC-CCSSEEEEEE---EHH----HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred -cc----cccCccEEEecCccccc-CCCceEEEEE---CHH----HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCC
Confidence 11 11235789999999774 2345699974 666 554443210 00123566
Q ss_pred hhHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEecCC------CHH
Q 013839 312 VHGILLVATILSDPNLKSLWIDE--VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFSGL------TPY 380 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~~~------~~~ 380 (435)
...+.++..++... .+. +++.+++++++++++.+.|++++. .+..+ .+++++|+.+ +.+
T Consensus 245 ~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T 1m32_A 245 THTVLAFAQALKEL------AKEGGVAARHQRYQQNQRSLVAGMRALGF----NTLLDDELHSPIITAFYSPEDPQYRFS 314 (366)
T ss_dssp HHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHHHHTTC----CBSSCGGGBCSSEEEEECCCCTTCCHH
T ss_pred HHHHHHHHHHHHHH------HHccCHhHHHHHHHHHHHHHHHHHHHCCC----eeccCchhcCceEEEEEcCccCCCCHH
Confidence 67666666666432 133 567888999999999999988753 33333 4566666633 445
Q ss_pred HHHHHhhhccEEEeCCC-------cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 381 QVDRLAKEFHIYMTQDG-------RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 381 ~~~~ll~~~gI~i~pgg-------Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+.|.++||.+.++. |++++.. +++++++++++|++++++
T Consensus 315 ~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 315 EFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 55444456799999862 9998653 678999999999987654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=233.75 Aligned_cols=290 Identities=11% Similarity=0.073 Sum_probs=207.7
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~ 169 (435)
....++++.+++++.... ++++. +++||++|+.++ +..++.+||+|+++.++|.+ +...++..|++++.
T Consensus 56 ~~~~~l~~~la~~~~~~~-----~~~v~--~~~gg~~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 126 (393)
T 3kgw_A 56 QIMEEIKQGIQYVFQTRN-----PLTLV--VSGSGHCAMETA--LFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQ 126 (393)
T ss_dssp HHHHHHHHHHHHHHTCCC-----SEEEE--ESCCTTTHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCC-----CcEEE--EeCCcHHHHHHH--HHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 345678888888873221 23466 899999999888 66678999999999988753 35677888999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. +.++.+|+++|++++++ .+++++++++||||||..++ +++|.++|++||+++|+|++|...... . +
T Consensus 127 ~~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~-~--~- 195 (393)
T 3kgw_A 127 MIK--KPGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGVP-I--Y- 195 (393)
T ss_dssp EEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTSC-C--C-
T ss_pred EeC--CCCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCcc-c--c-
Confidence 987 33457999999999983 16789999999999999987 558999999999999999997532211 1 0
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-----------------------cc
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-----------------------AM 306 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~ 306 (435)
.+..+.++++.|+||.++ .+.++||+++ +++ +++.+..... ..
T Consensus 196 ------~~~~~~d~~~~s~sK~~~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
T 3kgw_A 196 ------MDQQGIDIMYSSSQKVLN-APPGISLISF---NDK----AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVI 261 (393)
T ss_dssp ------TTTTTCCEEEEESSSTTC-CCSSCEEEEE---CHH----HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCC
T ss_pred ------hhhcCCCEEEecCccccc-CCCceeEEEE---CHH----HHHHHhccCCCCCceeecHHHHHHhhhhccccCCC
Confidence 112245788899999774 2344899974 888 7776654221 11
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----cCcceeEecC----CC
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT----NQLGMFCFSG----LT 378 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~g~~~~~~----~~ 378 (435)
..+++...+.++..++.... ...+++.+++++++++.+.+.|++++. .+.. ...+++.|+. .+
T Consensus 262 ~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 3kgw_A 262 HHTTPVTSLYCLRESLALIA-----EQGLENCWRRHREATAHLHKHLQEMGL----KFFVKDPEIRLPTITTVTVPAGYN 332 (393)
T ss_dssp CCCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTTC----CBSSSSGGGBCSSEEEEECCTTBC
T ss_pred CCCCCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcCC----eeccCChhhcCCeEEEEeCCCCCC
Confidence 23456666666656654221 134678889999999999999998863 3332 2234455443 34
Q ss_pred HHHH-HHHhhhccEEEeCCC--------cEEe-ccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 379 PYQV-DRLAKEFHIYMTQDG--------RISM-AGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ~~~~-~~ll~~~gI~i~pgg--------Ris~-~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+ +.+++++||.+.+|. |+++ +.. +++++++++++|++++++..
T Consensus 333 ~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 333 WRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 4444 666554599999862 9997 533 78999999999999998765
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=231.62 Aligned_cols=289 Identities=16% Similarity=0.081 Sum_probs=203.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHHh---hCC
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIWR---DAQ 164 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~---~~g 164 (435)
.+..++++.+++++ +.. +++++ +++||++|+.++ +.++. .+||+|++++|+|+.+...+. ..|
T Consensus 43 ~~~~~l~~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g 112 (382)
T 4eb5_A 43 EAVQEAREKVAKLV-NGG-----GGTVV--FTSGATEANNLA--IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG 112 (382)
T ss_dssp HHHHHHHHHHHHHH-TCT-----TEEEE--EESSHHHHHHHH--HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHh-CCC-----CCeEE--EcCchHHHHHHH--HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC
Confidence 45788999999998 332 45777 899999999998 55555 799999999999998866654 369
Q ss_pred CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 165 IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 165 ~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
++++.++. + +++.+|+++|+++++ ++++++++++|+||||..++ +++|.++|++||++ |+|++|.. ....
T Consensus 113 ~~~~~v~~-~-~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~-g~~~ 182 (382)
T 4eb5_A 113 FEVEYIPV-G-KYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASV-GQIE 182 (382)
T ss_dssp CEEEEECB-C-TTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB-TTBC
T ss_pred cEEEEecc-C-CCCccCHHHHHHHhc---CCCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhc-CCcc
Confidence 99999987 3 356799999999997 57899999999999999987 56899999999999 99999862 2111
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH---HHhhccccCCChhHHHHHHHH
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ---QIARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~~~~~~ 321 (435)
. ++... +.++++.|+||.+|++| +||+++ +++. .+...+. ........+++...+.++..+
T Consensus 183 --~---~~~~~----~~di~~~s~sK~~g~~g--~G~~~~---~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 246 (382)
T 4eb5_A 183 --V---DVEKI----GADMLTISSNDIYGPKG--VGALWI---RKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKA 246 (382)
T ss_dssp --C---CHHHH----TCSEEEEETGGGTCCSS--CEEEEE---ETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHH
T ss_pred --c---Ccccc----CCCEEEeehHHhcCCCc--eEEEEE---cccc--ccCceecCCCccccccCCCccHHHHHHHHHH
Confidence 1 12111 34688999999988666 688864 3330 0111000 001122334555555665556
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEec---CCCHHHHHHHhhhccEEEeC
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCFS---GLTPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~~---~~~~~~~~~ll~~~gI~i~p 395 (435)
+... .+.+++.+++++++++.+.+.|++++ ++.+..+.+ +.++++ +.+.+.+.+.|.++||.+.+
T Consensus 247 l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 317 (382)
T 4eb5_A 247 AEIT------AMEWREEAERLRRLRDRIIDNVLKIE---ESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQAST 317 (382)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHTTST---TEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBC
T ss_pred HHHH------HHhHHHHHHHHHHHHHHHHHHHhhCC---CeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEec
Confidence 5422 24567788899999999999998763 144444431 323333 44555554444678999987
Q ss_pred C-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 396 D-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 396 g-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
| + ||+++. .+++++++++++|+++++++..
T Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 318 GSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 2 999863 3789999999999999987664
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=228.54 Aligned_cols=287 Identities=12% Similarity=0.036 Sum_probs=202.3
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
..+..++++.+++++. ... .++++. +++||++|+.++ +..++. |+|++++|+|..+ ...++..|++++
T Consensus 32 ~~~~~~l~~~la~~~g-~~~---~~~~v~--~t~g~t~a~~~~--~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~ 101 (353)
T 2yrr_A 32 LRVNRAIQERLAALFD-PGE---GALVAA--LAGSGSLGMEAG--LANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPE 101 (353)
T ss_dssp HHHHHHHHHHHHHHHC-CCT---TCEEEE--ESSCHHHHHHHH--HHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHhC-CCC---CCceEE--EcCCcHHHHHHH--HHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceE
Confidence 3567899999999983 321 145677 899999999888 555544 8999999998875 455677899999
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. ++++.+|++++++.+++. +++++++++|+||||..++ +++|.++|++||+++|+|++|. +.... .
T Consensus 102 ~v~~--~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~-~~~~~--~- 170 (353)
T 2yrr_A 102 VLDF--PPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT-LGMLP--F- 170 (353)
T ss_dssp EEEC--CTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT-TTTSC--C-
T ss_pred EEeC--CCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc-ccccc--c-
Confidence 9998 335679999999999831 6788999999999999987 5589999999999999999984 32211 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHH-------------HHh--hccccCCCh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQ-------------QIA--RAMYGSPPV 312 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~-------------~~~--~~~~~~~~~ 312 (435)
++..+ +..+++.|++|.+ +.+| +||+++ +++ +++.++ ... .....+++.
T Consensus 171 --~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 2yrr_A 171 --SMRAM----GVDYAFTGSQKCLSAPPG--LAPIAA---SLE----ARKAFTGKRGWYLDLARVAEHWERGGYHHTTPV 235 (353)
T ss_dssp --CHHHH----TCSEEECCTTSTTCCCSS--CEEEEE---CHH----HHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCH
T ss_pred --ccccc----CceEEEecCcccccCCCc--eEEEEE---CHH----HHHHhccCCCccccHHHHhhhhhcCCCCCCCCH
Confidence 12111 2357788999965 5456 699974 777 554443 111 122335666
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--cceeEecC----CCHHHHHHHh
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFSG----LTPYQVDRLA 386 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~----~~~~~~~~ll 386 (435)
..+.++..++.... ...+++.+++++++++++.+.|++++ +.+..+. +++++|+. .+.+.+.+.|
T Consensus 236 ~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (353)
T 2yrr_A 236 LLHYALLEALDLVL-----EEGVAARERRAREVYAWVLEELKARG----FRPYPKASPLPTVLVVRPPEGVDADRLVRAL 306 (353)
T ss_dssp HHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CEESCSSSBCTTEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHCC----CccccCccCCCeEEEEECCCCCCHHHHHHHH
Confidence 66666666664321 12267788899999999999998875 3444443 45555553 3455554444
Q ss_pred hhccEEEeCC------C--cEEe-ccCCCCcHH-HHHHHHHHHHHh
Q 013839 387 KEFHIYMTQD------G--RISM-AGVTTGNVN-YLANAIHEVTRS 422 (435)
Q Consensus 387 ~~~gI~i~pg------g--Ris~-~~~~~e~i~-~~~~~l~~~l~~ 422 (435)
.++||.+.+| + |+++ ...++++++ +++++|++++++
T Consensus 307 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 307 YAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 5679999875 2 9998 434788898 999999988753
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=233.98 Aligned_cols=327 Identities=11% Similarity=0.071 Sum_probs=219.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
++...+|++.|.+...-|. .++.+.+.+.+.+..... ..+.+..-..++++.+++++ + ++++. +++||
T Consensus 34 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g-------~~~v~--~~~~g 102 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-N-------KEMVL--PMNTG 102 (392)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-T-------CSEEE--EESSH
T ss_pred CCCEEEEcCCChhhhccCC-CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-C-------CCEEE--EeCcH
Confidence 4578899998864221111 233444444444432111 11122334578888888887 3 23666 89999
Q ss_pred hhHHHHHHHHHHHh--------CCCCEEEEcCCCChhhHHHHhhCCCC-------------eeeeeecCCCCCCcChHhH
Q 013839 127 TGACRLFAEFQRRF--------HPESHIYFPDPTWSNHHNIWRDAQIP-------------ERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 127 ~~a~~~~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l 185 (435)
++|+.++..+.... ..||+|+++.|+|.++...+...+.. +..++. .|+++|
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 175 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL 175 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence 99999884322221 23689999999997765544433222 111111 289999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQ-WREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
+++++ +++++|++++|+||||.+++.++ +++|.++|++||+++|+||+|.++.+.+. .... ...+...++
T Consensus 176 ~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~-~~~~~~~d~-- 246 (392)
T 3ruy_A 176 KAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFAC-DWDNVTPDM-- 246 (392)
T ss_dssp HHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSE--
T ss_pred HHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhh-hccCCCCCE--
Confidence 99997 67899999999999999996555 99999999999999999999988776531 1111 111222233
Q ss_pred EecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 265 ~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
.++||.++ +| +|+||+++ +++ +++.+.........+.+.+++.++..++... +. ++.+++++
T Consensus 247 -~~~SK~l~-gG~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~-~~~~~~~~ 309 (392)
T 3ruy_A 247 -YILGKALG-GGVFPISCAAA---NRD----ILGVFEPGSHGSTFGGNPLACAVSIAALEVL-------EE-EKLTERSL 309 (392)
T ss_dssp -EEECGGGG-TTTSCCEEEEE---CHH----HHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH-------HH-TTHHHHHH
T ss_pred -EEEchhhh-CChhhhEEEEE---CHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHH-------Hh-hhHHHHHH
Confidence 36789876 46 99999974 777 7776666555556688889998888888642 12 56778889
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEec--CCCHHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--GLTPYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAI 416 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l 416 (435)
++++++.+.|++++.+ .+....+.++++.|. +...++...+ .++||.+.|++ |+++.. .+++++++++++|
T Consensus 310 ~~~~~l~~~L~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l 387 (392)
T 3ruy_A 310 QLGEKLVGQLKEIDNP-MITEVRGKGLFIGIELNEPARPYCEQL-KAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKI 387 (392)
T ss_dssp HHHHHHHHHHTTCCCT-TEEEEEEETTEEEEEESSCSHHHHHHH-HTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEeeeeEEEEEEcchHHHHHHHH-HHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999887532 234445566655554 2133444555 57899999985 888432 3789999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
++++
T Consensus 388 ~~~l 391 (392)
T 3ruy_A 388 KAVL 391 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=227.80 Aligned_cols=326 Identities=14% Similarity=0.045 Sum_probs=217.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++..|+|+.+.+ ..+++.+.+++.....+....|++.....++++.+++++ +. ++++. +++||+
T Consensus 5 ~~~~~id~~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~------~~~v~--~~~~gt 69 (356)
T 1v72_A 5 SRPPALGFSSDNI------AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIF-ER------DVEVF--LVPTGT 69 (356)
T ss_dssp -CCCCCBCSCGGG------CCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHH-TS------CCEEE--EESCHH
T ss_pred CCCceEeeccCCc------cCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHh-CC------CCcEE--EeCCcc
Confidence 3467899998874 122333444444333222345766666778888888887 32 23566 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH--HhhC--CCCeeeeeecCCCCCCcChHhHHH-HhhcC----CCCcEE
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--WRDA--QIPERTYHYYDPDSKSLDFAALMD-DIKNA----PDSSFF 198 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~e~l~~-~i~~~----~~~~~~ 198 (435)
+|+.++ +..++.+||+|+++.|+|...... +... |++++.++.. ++.+|+++|++ ++.+. .+++++
T Consensus 70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence 998888 666678999999999998766544 6666 9999888862 36899999999 88731 126789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC--CCCcccHHHHHHhh-hcCCeEEEEeccccccccc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS--GDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~--~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++|+| ||.+++.+++++|.++|++||+++|+|++|..+.. .+. . ...+. +.... +++.|+||. +
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~---~~~~~~~~~~d-~~~~s~sK~-g-- 214 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--S---PAEMTWKAGVD-ALSFGATKN-G-- 214 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--C---TTTTTGGGTCC-EEEECCGGG-T--
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--C---HHHhhhhhcCC-EEEEecccC-C--
Confidence 99999987 99999999999999999999999999999864321 110 0 00110 11122 445689998 4
Q ss_pred CCccc--EEEEEecChhHHHHHHHHHHHHhhccc--cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 276 GHRVG--CLSILCVDSKQAAAIRSQIQQIARAMY--GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQ 351 (435)
Q Consensus 276 G~RvG--~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
.|+| |++ + +++ +++.+........ ...+...+..+...+.+. ......++++++++++.+
T Consensus 215 -~~~G~g~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~l~~ 278 (356)
T 1v72_A 215 -VLAAEAIVL--F-NTS----LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD--------LWLRNARKANAAAQRLAQ 278 (356)
T ss_dssp -CSSCEEEEE--S-SGG----GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHH
T ss_pred -CcCccEEEE--E-CHH----HHhhHHHHhhccCchhhhHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHH
Confidence 3566 664 3 777 6555554332211 111223333334455432 122345667788888899
Q ss_pred HHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCC----C--cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 352 NLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD----G--RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|+++. ++.+..+.+++++|+.+..++.+.+ .++||.+.|| + |+++.. .+++++++++++|++++++.
T Consensus 279 ~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 279 GLEGLG---GVEVLGGTEANILFCRLDSAMIDAL-LKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp HHTTCT---TEEEESCCCSSEEEEEECHHHHHHH-HHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred HHhhCC---CcEEccCCCccEEEEEcCHHHHHHH-HhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 987752 2455556778889988776666666 5689999965 2 998743 37899999999999887654
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=232.28 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=208.3
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERTY 170 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v 170 (435)
...++++.+++++. ... ++.+. ++.||++|+.++ +..++.+||+|++++|+|.+ +...++..|++++.+
T Consensus 47 ~~~~~~~~la~~~~-~~~----~~~v~--~~~sgt~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 117 (411)
T 3nnk_A 47 YMNEVMALYRGVFR-TEN----RWTML--VDGTSRAGIEAI--LVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTI 117 (411)
T ss_dssp HHHHHHHHHHHHHT-CCC----SEEEE--EESCHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhC-CCC----CcEEE--ECCCcHHHHHHH--HHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEE
Confidence 34678888888873 321 12255 788889999988 66678999999999999977 888888999999999
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. ++++.+|+++|++++++ .+++++++++|+||||.+.+ +++|.++|++||+++|+|+++...... .
T Consensus 118 ~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~----- 184 (411)
T 3nnk_A 118 EV--PWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP-L----- 184 (411)
T ss_dssp EC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC-C-----
T ss_pred ec--CCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc-c-----
Confidence 87 44578899999999973 26789999999999999987 558999999999999999996432211 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------------
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA--------------------------- 303 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~--------------------------- 303 (435)
. ....+.++++.|++|.++ .+.++||+++ +++ +++.+....
T Consensus 185 ~----~~~~~~d~~~~s~~K~l~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~ 252 (411)
T 3nnk_A 185 E----TDVWGLDAVSAGMQKCLG-GPSGTSPITL---SAR----MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLG 252 (411)
T ss_dssp C----TTTTTCSEEECCSTTTTC-CCSSEEEEEE---CHH----HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHH
T ss_pred c----hhccCCcEEEecCccccC-CCCceEEEEE---CHH----HHHHHhhcccccccccccccccccCCCCcccccchH
Confidence 0 112245788999999754 3345899964 888 776666532
Q ss_pred ---------hccccCCChhHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC---cc
Q 013839 304 ---------RAMYGSPPVHGILLVATILSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LG 370 (435)
Q Consensus 304 ---------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g 370 (435)
.....+++...+.++..++... .+. +++.+++++++++++.+.|++++. .+..+. .+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~ 322 (411)
T 3nnk_A 253 MVMDYWGPERLNHHTEATTALFGARECARLI------LQEGLDYGIARHKLHGDALVKGIQAMGL----ETFGDLKHKMN 322 (411)
T ss_dssp HHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTTC----CBCSCGGGBCS
T ss_pred HHHhhhccccCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHcCC----EeCCCcccccc
Confidence 0112345556666665555432 133 678889999999999999998864 333333 24
Q ss_pred eeEecC----CCHHHH-HHHhhhccEEEeCC------C--cEEe-ccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 371 MFCFSG----LTPYQV-DRLAKEFHIYMTQD------G--RISM-AGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 371 ~~~~~~----~~~~~~-~~ll~~~gI~i~pg------g--Ris~-~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.++. .+.+.+ ..+++++||.+.+| + ||++ +.. +++++++++++|++++++..
T Consensus 323 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 323 NVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 455543 355544 55656569999886 1 9997 533 67899999999999998755
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=234.45 Aligned_cols=344 Identities=10% Similarity=0.004 Sum_probs=201.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|++.|.+.+.-|. .++.+++++.+++... . .|.+..+..+.++++++++..... ...+++. +++||+
T Consensus 27 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~-~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~--~~~gg~ 99 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGH-GRAEVGERMAAQAARL-P-FVHGSQFSSDVLEEYAGRLARFVG--LPTFRFW--AVSGGS 99 (430)
T ss_dssp TSCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHC-C-CCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEE--EESSHH
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhc-c-cccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCcHH
Confidence 4577899999864333332 2444555555554321 1 133333444455555555421111 1145787 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCC---------------CeeeeeecCCCC---CCcChH
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQI---------------PERTYHYYDPDS---KSLDFA 183 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~---------------~~~~v~~~~~~~---~~~d~e 183 (435)
+|+.++..+.... .++|+|++.+|+|.++.......+. .+..++. .+. ...|++
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK--PDPARNGAEDAE 177 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC--CCTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC--CcccchhhHHHH
Confidence 9999984332222 4578999999999887654443332 2222332 111 124668
Q ss_pred hHHHHhhcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 184 ALMDDIKNAP-DSSFFLLHPSAHN-PTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 184 ~l~~~i~~~~-~~~~~v~~~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+|++++++.. +++++++++.++| |+|. .++.+++++|.++|++||+++|+||+|.++...+. ......+.+...
T Consensus 178 ~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~~~~~~~ 254 (430)
T 3i4j_A 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSRWSGVTP 254 (430)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTTCCC
T ss_pred HHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhhhcCCCC
Confidence 8998887432 3456666666677 8887 56888899999999999999999999998876531 112211102112
Q ss_pred eEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH----hhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI----ARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+ +.+|||.++ .| +|+||+++ +++ +++.+.+. ....+.+.+.++|.++.++|+... + ++..
T Consensus 255 d---i~t~sK~l~-~G~~r~G~~~~---~~~----i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~ 319 (430)
T 3i4j_A 255 D---IAVLGKGLA-AGYAPLAGLLA---APQ----VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE--R--EDLT 319 (430)
T ss_dssp S---EEEECGGGT-TTSSCCEEEEE---CHH----HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH--H--TTHH
T ss_pred c---EEEEccccc-CCccccEEEEE---CHH----HHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH--c--ccHH
Confidence 2 336899999 59 99999974 888 88888763 334456788899988888886321 0 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-C-------------HHHHHHHhhhccEEEeCC-----
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-T-------------PYQVDRLAKEFHIYMTQD----- 396 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~-------------~~~~~~ll~~~gI~i~pg----- 396 (435)
+..++..+..++.+.+.+..++. +...++.+. |+++.+ + .++.+.+ .++||.+.|+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~ 394 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFPQ---MMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAA-LKRGLITYPGSGAEP 394 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEC------------CHHHHHHHH-HHTTEECC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---eEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHH-HhCCCEEEecccccC
Confidence 33333334444444444434432 334455554 554432 1 2234555 4689999987
Q ss_pred ---C---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 397 ---G---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 ---g---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ||+++ ..+++++++++++|++++++.
T Consensus 395 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 395 NGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ----CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 88875 348899999999999998753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=233.27 Aligned_cols=331 Identities=10% Similarity=0.018 Sum_probs=211.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC---CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF---LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+|++.|.+...-|+..++.+++++.+++..... ..|+. ....++++.+++++ +.. . +++|. +++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~-~~~---~-~~~v~--~~~ 111 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYN-IPQLELAKKLVTYS-PGN---F-QKKVF--FSN 111 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCC-HHHHHHHHHHHHHS-SCS---S-CEEEE--EES
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCC-HHHHHHHHHHHHhC-CCC---c-CCEEE--EeC
Confidence 45678999998852222222145555555555543211 11332 23456677777665 321 1 35777 999
Q ss_pred CchhHHHHHHHHHHHhC-CCCEEEEcCCCChhhHHH-HhhCC-------------CCeeeeeecCCC--CCC--------
Q 013839 125 SGTGACRLFAEFQRRFH-PESHIYFPDPTWSNHHNI-WRDAQ-------------IPERTYHYYDPD--SKS-------- 179 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~~-~~~~g-------------~~~~~v~~~~~~--~~~-------- 179 (435)
||++|+.++. ..... +||+|++++|+|.++... +...| .+++.++..+.. .++
T Consensus 112 gg~ea~~~ai--~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~ 189 (419)
T 2eo5_A 112 SGTEAIEASI--KVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPS 189 (419)
T ss_dssp SHHHHHHHHH--HHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHH
T ss_pred chHHHHHHHH--HHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccch
Confidence 9999999884 33222 389999999999765432 22211 245666652111 112
Q ss_pred ----cChHhHH-HHhhcCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 180 ----LDFAALM-DDIKNAP--DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 180 ----~d~e~l~-~~i~~~~--~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
+|+++|+ +++++.. +++++++++..|||||. ..+.+++++|.++|++||+++|+||+|.+|...+. ...
T Consensus 190 ~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~ 266 (419)
T 2eo5_A 190 ELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFA 266 (419)
T ss_dssp HHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSG
T ss_pred hhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhh
Confidence 4688998 8886421 24556655444567896 66888999999999999999999999998876431 111
Q ss_pred HHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
... .+...++ .||||.++ .| +|+||+++ +++ ++ .+ ......+.+.+.++|.++.++|+..
T Consensus 267 ~~~-~~~~~d~---~t~sK~~~-~G~~riG~~~~---~~~----~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~----- 327 (419)
T 2eo5_A 267 IEN-FNTVPDV---ITLAKALG-GGIMPIGATIF---RKD----LD-FK-PGMHSNTFGGNALACAIGSKVIDIV----- 327 (419)
T ss_dssp GGG-GTCCCSE---EEECGGGG-TTTSCCEEEEE---EGG----GC-CC-------CCCCCHHHHHHHHHHHHHH-----
T ss_pred HHh-cCCCCCE---EEeccccc-CCccceEEEEE---chH----hh-cC-CcccCCCCCCCHHHHHHHHHHHHHH-----
Confidence 111 1222333 37999999 59 99999974 666 55 44 2122345677889999888888532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-C----HHHHHHHhhhccEEEeCCC----cEEe
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-T----PYQVDRLAKEFHIYMTQDG----RISM 401 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~----~~~~~~ll~~~gI~i~pgg----Ris~ 401 (435)
++.+++++++++.+.+.|+++ +....+. |.|+|+.+ . .++...+ .++||.+.|+| ||++
T Consensus 328 -----~~~~~~~~~~~~~l~~~L~~~-----~~~~~~~-g~~~~i~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~lRis~ 395 (419)
T 2eo5_A 328 -----KDLLPHVNEIGKIFAEELQGL-----ADDVRGI-GLAWGLEYNEKKVRDRIIGES-FKRGLLLLPAGRSAIRVIP 395 (419)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTS-----SSEEEEE-TTEEEEECSCHHHHHHHHHHH-HHTTEECEEETTTEEEECC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHh-----hhheEee-eEEEEEEEecCccHHHHHHHH-HHCCCEEecCCCCEEEEEC
Confidence 126788888999999998765 1233444 45666665 2 2333555 46899999864 8876
Q ss_pred c-cCCCCcHHHHHHHHHHHHHh
Q 013839 402 A-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ ..+++++++++++|++++++
T Consensus 396 ~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 396 PLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 4 23889999999999998865
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=230.45 Aligned_cols=289 Identities=10% Similarity=0.083 Sum_probs=206.0
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~ 169 (435)
....++++.+++++. .. ++++ .+++.||++|+.++ +.+++.+||+|++++|+|.. +...++..|++++.
T Consensus 44 ~~~~~l~~~la~~~g-~~-----~~~~-~~~~~s~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 114 (416)
T 3isl_A 44 GIMNETMEMLRELFQ-TK-----NRWA-YPIDGTSRAGIEAV--LASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHM 114 (416)
T ss_dssp HHHHHHHHHHHHHTT-CC-----CSEE-EEEESCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhC-CC-----CCcE-EEecCcHHHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEE
Confidence 346778888888873 22 2222 12678888999888 66678999999999999987 66778889999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. ++++.+|++++++++++ ++++++++++|+||||...+ +++|.++|++||+++|+|++|...... . +
T Consensus 115 v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~- 183 (416)
T 3isl_A 115 LEC--EWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCE-V--K- 183 (416)
T ss_dssp EEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSC-C--C-
T ss_pred Eec--CCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCC-c--c-
Confidence 997 34568899999999973 25689999999999999987 568999999999999999997533221 1 0
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh--------------------------
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-------------------------- 303 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-------------------------- 303 (435)
....+.++++.|++|.++ .+.++|++++ +++ +++.+....
T Consensus 184 ------~~~~~~d~~~~s~~K~l~-g~~g~g~~~~---~~~----~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~ 249 (416)
T 3isl_A 184 ------VDEWKIDAAIGGTQKCLS-VPSGMAPITY---NER----VADVIAARKKVERGIATQADRAALSGNRPITSNYF 249 (416)
T ss_dssp ------TTTTTCSEEECCSSSTTC-CCSSEEEEEE---CHH----HHHHHHTC------------------CCCCSCSTT
T ss_pred ------hhhcCCCEEEecCccccC-CCCCeEEEEE---CHH----HHHHhhccccccccccccccchhccCCCCCCcccc
Confidence 011245788999999743 3345899864 777 666555321
Q ss_pred ------------hccccCCChhHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc-
Q 013839 304 ------------RAMYGSPPVHGILLVATILSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL- 369 (435)
Q Consensus 304 ------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 369 (435)
.....+++...+.++..++... .+. +++.+++++++++++.+.|++.+ +.+..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~ 319 (416)
T 3isl_A 250 DLSQLEDYWSERRLNHHTEATTMLYALREGVRLV------LEEGLETRFERHRHHEAALAAGIKAMG----LRLFGDDSC 319 (416)
T ss_dssp CHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CCBCSCGGG
T ss_pred chHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHcC----CEeccCccc
Confidence 1122345666666666666432 233 77888999999999999999876 34444432
Q ss_pred --ceeEecC----CCHHHH-HHHhhhccEEEeCC------C--cEEec-cCCCCc-HHHHHHHHHHHHHhhh
Q 013839 370 --GMFCFSG----LTPYQV-DRLAKEFHIYMTQD------G--RISMA-GVTTGN-VNYLANAIHEVTRSEQ 424 (435)
Q Consensus 370 --g~~~~~~----~~~~~~-~~ll~~~gI~i~pg------g--Ris~~-~~~~e~-i~~~~~~l~~~l~~~~ 424 (435)
+.+.++. .+.+.+ +.+++++||.+.+| + ||++. ..++++ +++++++|++++++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 320 KMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp BCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 3455443 355544 55655559999975 1 99983 336666 9999999999998754
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=231.01 Aligned_cols=335 Identities=15% Similarity=0.109 Sum_probs=218.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|.+.+.-+ ..++.+.+.+.+.+... ....| +.....++++.+++++ +.. ++++. +++|
T Consensus 43 ~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~-----~~~v~--~~~g 112 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL-PPE-----LNRVF--PVNS 112 (395)
T ss_dssp TSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS-CTT-----EEEEE--EESS
T ss_pred CCCEEEEccCccccccCC-CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc-CCC-----cCEEE--EcCc
Confidence 456789999986422222 13333333333333211 11224 4456678888888886 322 45777 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChh-hHHHHhhCCCCeee---eeecCCCC--CCcChHhHHHHhhcCCCCcEEE
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSN-HHNIWRDAQIPERT---YHYYDPDS--KSLDFAALMDDIKNAPDSSFFL 199 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~---v~~~~~~~--~~~d~e~l~~~i~~~~~~~~~v 199 (435)
|++|+.++...+..+.+||+|++++|+|.+ +...+...|.+.+. +|+..+.. ...|+++|+++++ ++++++
T Consensus 113 g~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v 189 (395)
T 1vef_A 113 GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAV 189 (395)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEE
Confidence 999999884322112578999999999965 44466666765321 12210000 0258999999987 578888
Q ss_pred EeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 200 LHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 200 ~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
++++++||||... +.+++++|.++|++||+++|+||+|.++.+.+. . .++... +...+++ |+||.++. |+|
T Consensus 190 ~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~-~~~~~~-~~~~d~~---s~sK~~~~-g~~ 261 (395)
T 1vef_A 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--R-FAFEHF-GIVPDIL---TLAKALGG-GVP 261 (395)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-STHHHH-TCCCSEE---EECGGGGT-TSS
T ss_pred EEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--h-hHhhhc-CCCCCEE---EEcccccC-CCc
Confidence 8877789999865 688899999999999999999999987654321 1 111111 2222333 88999995 999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||+++ +++ +++.+.........+++.+.+.++..+++... + ....++++++++.+.+.|++++.
T Consensus 262 ~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~ 326 (395)
T 1vef_A 262 LGVAVM---REE----VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE------R--TRLWERAAELGPWFMEKLRAIPS 326 (395)
T ss_dssp CEEEEE---EHH----HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--HTTHHHHHHHHHHHHHHHHTSCC
T ss_pred eEEEEe---hHH----HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHhhc
Confidence 999974 666 66655542223445677888887777775321 1 34667888888999999988764
Q ss_pred CCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
+ .+.. .+..|.|+|+.+ ..++.+.+++++||.+.+++ ||+++ ..+++++++++++|++++
T Consensus 327 ~-~~~~-~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 327 P-KIRE-VRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp T-TEEE-EEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred C-ceEE-EEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2 1111 223456777654 34455666537899999874 88764 347899999999998875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=230.98 Aligned_cols=322 Identities=13% Similarity=0.016 Sum_probs=217.4
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCC----CCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESI----SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
+.+.|..+.+ . +.++.+.+.+...+.. .....|. ...+..++++.+++++ +.. ++++. ++
T Consensus 26 ~~~~ld~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~~ 92 (406)
T 3cai_A 26 GWVHFDAPAG-M----LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV-NAD-----PGGVV--LG 92 (406)
T ss_dssp SCEECBGGGC-C----CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH-TCC-----GGGEE--EE
T ss_pred CeEEEeCCCc-C----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh-CCC-----CCeEE--Ee
Confidence 4788888874 1 2333344433333321 1112243 2456789999999998 332 45787 89
Q ss_pred CCchhHHHHHHHHHHH---hCCCCEEEEcCCCChhhHHHHhh----CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 124 LSGTGACRLFAEFQRR---FHPESHIYFPDPTWSNHHNIWRD----AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+|+++++.++ +.++ +.+||+|+++.|+|..+...+.. .|++++.++. +++++.+|+++|++.++ +++
T Consensus 93 ~g~t~al~~~--~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~l~---~~~ 166 (406)
T 3cai_A 93 ADRAVLLSLL--AEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEV-DIETGELPTWQWESLIS---KST 166 (406)
T ss_dssp SCHHHHHHHH--HHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECC-CTTTCCCCGGGHHHHCC---TTE
T ss_pred CChHHHHHHH--HHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEec-CcccCCcCHHHHHHHhC---CCc
Confidence 9999999887 4444 68999999999999877555443 6999999987 33567899999999997 678
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... + .+ +... +.++++.|+||.+| ++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-~--~~---~~~~----~~d~~~~s~~K~~g-~~ 232 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYR-L--LD---IRET----DADVVTVNAHAWGG-PP 232 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTC-C--CC---HHHH----CCSEEEEEGGGGTS-CS
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC-C--CC---chhc----CCCEEEeehhhhcC-CC
Confidence 99999999999999987 56899999999999999999863221 1 11 1111 35788999999876 54
Q ss_pred Cccc-EEEEEecChhHHHHHHHHHHHHhh---------ccccCCChhHHHHHHHHhCChh---------hHHHHHHHHHH
Q 013839 277 HRVG-CLSILCVDSKQAAAIRSQIQQIAR---------AMYGSPPVHGILLVATILSDPN---------LKSLWIDEVKI 337 (435)
Q Consensus 277 ~RvG-~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~q~~~~~~l~~~~---------l~~~~~~~~~~ 337 (435)
+| |++ + +++ +++.++.... ....+++...+.++..++.... ...++.+++++
T Consensus 233 --~G~~~~--~-~~~----~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~ 303 (406)
T 3cai_A 233 --IGAMVF--R-DPS----VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQS 303 (406)
T ss_dssp --CEEEEE--S-CHH----HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHH
T ss_pred --cCeEEE--E-ehH----HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHH
Confidence 88 886 3 777 6665544321 1123345555544444443110 01223336788
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccC---cceeEec---CCCHHHHHHHhhhccEEEeCC---------------
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LGMFCFS---GLTPYQVDRLAKEFHIYMTQD--------------- 396 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~---~~~~~~~~~ll~~~gI~i~pg--------------- 396 (435)
.+++++++++++.+.|++++. +.+..+. ++ ++++ +.+.+.+.+.|.++||.+.+|
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~ 379 (406)
T 3cai_A 304 ADAYLNRVFDYLMVSLRSLPL---VMLIGRPEAQIP-VVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVG 379 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT---EEECCCCSSBCS-EEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC---eEEcCCccccCC-EEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCC
Confidence 889999999999999988632 4444442 44 4444 345555544456789999863
Q ss_pred C--cEEeccC-CCCcHHHHHHHHHH
Q 013839 397 G--RISMAGV-TTGNVNYLANAIHE 418 (435)
Q Consensus 397 g--Ris~~~~-~~e~i~~~~~~l~~ 418 (435)
+ |++++.. +++++++++++|++
T Consensus 380 ~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 380 GAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCHHHHHHHHHHHHH
Confidence 2 9998643 57889999988864
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=224.74 Aligned_cols=284 Identities=17% Similarity=0.074 Sum_probs=201.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHHhh---CCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIWRD---AQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~~---~g~~ 166 (435)
..++++.+++++ +.. +++++ +++|+++|+.++ +.+++ .+||+|++++|+|+.+...+.. .|++
T Consensus 45 ~~~~~~~la~~~-~~~-----~~~i~--~~~g~~~a~~~~--~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4hvk_A 45 VQEAREKVAKLV-NGG-----GGTVV--FTSGATEANNLA--IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHT-TCT-----TEEEE--EESSHHHHHHHH--HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHc-CCC-----cCeEE--EECCchHHHHHH--HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCE
Confidence 347788888876 332 45777 899999999988 55555 8999999999999988765543 6999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .+++.+|+++|+++++ ++++++++++|+||||...+ +++|.++|++||+ +|+|++|...... .
T Consensus 115 ~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~~-~- 183 (382)
T 4hvk_A 115 VEYIPV--GKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQIE-V- 183 (382)
T ss_dssp EEEECB--CTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTTBC-C-
T ss_pred EEEecc--CCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCCC-C-
Confidence 999988 3456899999999997 67899999999999999987 5589999999999 9999996532211 1
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHH
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVA 319 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~ 319 (435)
+ ... .+.++++.|+||.+|.+| +|++++ +++ . .+... .......++...+.++.
T Consensus 184 -~---~~~----~~~d~~~~s~~K~~g~~g--~g~~~~---~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (382)
T 4hvk_A 184 -D---VEK----IGADMLTISSNDIYGPKG--VGALWI---RKE----A--KLQPVILGGGQENGLRSGSENVPSIVGFG 244 (382)
T ss_dssp -C---HHH----HTCSEEEEESGGGTSCTT--CEEEEE---ETT----C--CCCCSSCSSCTGGGTSCSCCCHHHHHHHH
T ss_pred -C---chh----cCCCEEEEeHHHhcCCCc--eEEEEE---cCc----c--CcCcccccCCCcCccccCCcCHHHHHHHH
Confidence 1 111 134688999999887666 677753 333 1 11111 01113344556666665
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEe---cCCCHHHHHHHhhhccEEE
Q 013839 320 TILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCF---SGLTPYQVDRLAKEFHIYM 393 (435)
Q Consensus 320 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~ll~~~gI~i 393 (435)
.++... .+++++.+++++++++.+.+.|++++. +.+..+++ +.+++ .+.+.+.+.+.|+++||.+
T Consensus 245 ~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 315 (382)
T 4hvk_A 245 KAAEIT------AMEWREEAERLRRLRDRIIDNVLKIEE---SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQA 315 (382)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEE
Confidence 665421 256788889999999999999987632 44444332 11222 2456666655567789999
Q ss_pred eCC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhhh
Q 013839 394 TQD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 394 ~pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
.+| + |++++. .+++++++++++|++++++....
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 316 STGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp BCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 864 2 999863 36789999999999999876643
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=225.44 Aligned_cols=252 Identities=11% Similarity=0.006 Sum_probs=182.4
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+.-.+++|.| +....+...+.+.+++....+ ...+.|. +..+..++++.+++++ +. + +.+ ++.+|+
T Consensus 21 ~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~------~-~~i--~~~sG~ 89 (398)
T 2rfv_A 21 DPSTGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE-RG------E-AGL--ATASGI 89 (398)
T ss_dssp CTTTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH-TC------S-EEE--EESSHH
T ss_pred ccCCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh-CC------C-cEE--EECCHH
Confidence 3346888887 766666666666666553221 1133343 4566788999999987 32 1 233 577788
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+|+.++ +..++.+||+|+++.|+|.++...+ +..|.+++.++. .|++++++.++ ++++++++++
T Consensus 90 ~a~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~ 157 (398)
T 2rfv_A 90 SAITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMR---PETKVVYIET 157 (398)
T ss_dssp HHHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC---TTEEEEEEES
T ss_pred HHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcC---CCCeEEEEEC
Confidence 998888 6667889999999999999887766 778988888875 17899999987 6789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCL 282 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~ 282 (435)
|+||||.+++ +++|.++|++||+++|+|++|..+.+.. +. . .+.++++.|+||.++.+|+|+ ||+
T Consensus 158 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~s~sK~~~~~g~~~~G~~ 223 (398)
T 2rfv_A 158 PANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------PL----Q-LGADIVVHSVTKYINGHGDVIGGII 223 (398)
T ss_dssp SBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred CCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCCcEEEEeCcccccCCCCceEEEE
Confidence 9999999986 7799999999999999999998766532 11 1 146789999999998899998 999
Q ss_pred EEEecChhHHHHHHH-HHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 283 SILCVDSKQAAAIRS-QIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
++ +++ +++ .++...... ..+.+.+.+.++..+++... . ..++..++.+.+.+.|++.
T Consensus 224 ~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~----~~~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 224 VG---KQE----FIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG------I----RMERHCENALKIARFLEGH 282 (398)
T ss_dssp EE---CHH----HHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH------H----HHHHHHHHHHHHHHHHHTC
T ss_pred EE---CHH----HHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH------H----HHHHHHHHHHHHHHHHHcC
Confidence 64 777 554 455444333 45677888888888886421 2 2233445556666666654
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=225.22 Aligned_cols=319 Identities=14% Similarity=0.059 Sum_probs=200.7
Q ss_pred CCC-CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSP-YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~-~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+. ++||++.|.+ + ..+++.+.+++. . ...| ..-...+++.+++++ +.. . +++++ +++||
T Consensus 25 ~g~~~v~~~~~~~~-~----~~~~~~v~~a~~----~-~~~~--~~~~~~~~~~~a~~~-g~~-~---~~~~~--~~~gg 85 (374)
T 2aeu_A 25 KGRDALYDLSGLSG-G----FLIDEKDKALLN----T-YIGS--SYFAEKVNEYGLKHL-GGD-E---NDKCV--GFNRT 85 (374)
T ss_dssp TCGGGCEECSSCCC-C----CCCCHHHHHHHT----S-TTHH--HHHHHHHHHHHHHHH-TCC-T---TEEEE--EESSH
T ss_pred cCccceeeecccCC-C----CCCCHHHHHHHH----H-hcCc--hHHHHHHHHHHHHHh-CCC-C---cceEE--EEcCh
Confidence 445 6899998874 2 233333333332 1 1111 111124444444444 432 1 34666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEE-EEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFF-LLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~-v~~~ 202 (435)
++|+.++ +.++ +||+|+++.|+|+++.. .++..|++++.+ .|+++++++ . +++++ ++++
T Consensus 86 t~a~~~~--~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~ 148 (374)
T 2aeu_A 86 SSAILAT--ILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITG 148 (374)
T ss_dssp HHHHHHH--HHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEEC
T ss_pred HHHHHHH--HHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEc
Confidence 9999888 5544 99999999998876544 567789888776 278888877 4 57889 9999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+||||||. +..++++|.++|++||+++|+|++|..+..++. ...... .. ..+++++|+||.+ +|+|+||+
T Consensus 149 ~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~-~~----~~di~~~S~sK~l--~g~~~G~~ 218 (374)
T 2aeu_A 149 STMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL-KL----GADLVVTSTDKLM--EGPRGGLL 218 (374)
T ss_dssp BCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH-HH----TCSEEEEETTSSS--SSCSCEEE
T ss_pred cCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc-cc----CCcEEEecCcccc--cCcceEEE
Confidence 99999997 789999999999999999999999866531000 000011 11 2468899999995 57899998
Q ss_pred EEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhCC
Q 013839 283 SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK----RTTLRQNLEKLGS 358 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~ 358 (435)
++ +++ +++.++........+++.+.+.++..++..... +..+...+..+.. ++.+.+.|..+..
T Consensus 219 ~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 286 (374)
T 2aeu_A 219 AG---KKE----LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL-----ERIRKAFERAKNFDLSKIEKLNKELKAIDD 286 (374)
T ss_dssp EE---EHH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHTTTCT
T ss_pred EE---CHH----HHHHHHHhhccccCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 64 777 777777765444446778888888777754210 1111111111111 4455555544310
Q ss_pred CCCccc-cccCcceeEecCCCH--H------HHHHHhhhccEEEeCCC---------cEEeccC--CCCcHHHHHHHHHH
Q 013839 359 SLNWEH-ITNQLGMFCFSGLTP--Y------QVDRLAKEFHIYMTQDG---------RISMAGV--TTGNVNYLANAIHE 418 (435)
Q Consensus 359 ~~~~~~-~~~~~g~~~~~~~~~--~------~~~~ll~~~gI~i~pgg---------Ris~~~~--~~e~i~~~~~~l~~ 418 (435)
..++.+ ..+.+.++.|..... + ++..+++++||.+.||. ||+++.. .+++++++.+.|++
T Consensus 287 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~ 366 (374)
T 2aeu_A 287 NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVE 366 (374)
T ss_dssp TEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHH
T ss_pred ccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHH
Confidence 011343 345555555654432 1 44567778899998861 9998642 23347888888888
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
+++++.
T Consensus 367 ~l~~~~ 372 (374)
T 2aeu_A 367 SIKMAF 372 (374)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776653
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=225.47 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=195.6
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCCCeeeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQIPERTYHY 172 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~ 172 (435)
.++++.+++++ +... +.+++ .+++||++|+.++ +.+++.+||+|++++|+|.++. ..+...|++++.++.
T Consensus 55 ~~~~~~la~~~-g~~~----~~~~i-~~~~ggt~al~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 55 LENEKFMLEYA-KAPE----GSKAV-FMTCSSTGSMEAV--VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHH-TCCT----TCEEE-EESSCHHHHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHh-CCCC----CceEE-EEcCChhHHHHHH--HHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 45666666666 3321 11333 1588889999988 6667889999999998776654 346778999999987
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+.++.+|++++++.+. ++++++++++|+||||.+++ +++|.++|++||+++|+|+++..+... . + +
T Consensus 127 --~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~-~--~---~ 192 (376)
T 3f0h_A 127 --EHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP-F--N---M 192 (376)
T ss_dssp --CTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---H
T ss_pred --CCCCCCCHHHHHHhhc---cCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc-c--c---c
Confidence 3457899999998776 67889999999999999998 779999999999999999997655432 1 1 1
Q ss_pred HHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhh-----------------ccccCCChhH
Q 013839 253 RIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-----------------AMYGSPPVHG 314 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~ 314 (435)
.. .+.++++.|+||.++ .+| +|++++ +++ +++.+..... ....+++...
T Consensus 193 ~~----~~~d~~~~s~~K~l~~~~G--~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (376)
T 3f0h_A 193 NE----CGADVMITGSQKVLACPPG--ISVIVL---APR----GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGI 259 (376)
T ss_dssp HH----HTCSEEEEETTTTTCCCSS--CEEEEE---CHH----HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHH
T ss_pred cc----cCccEEEecCcccccCCCc--eEEEEE---CHH----HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHH
Confidence 11 124688999999998 566 567653 787 6666653211 0122334433
Q ss_pred HHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--cceeEec--CCCHHHH-HHHhhh
Q 013839 315 ILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFS--GLTPYQV-DRLAKE 388 (435)
Q Consensus 315 q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~--~~~~~~~-~~ll~~ 388 (435)
+.++..++..-. +. .+++.+++++++++.+.+.|++++ +....+. .+++.+. +.+.+.+ ..++++
T Consensus 260 ~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 330 (376)
T 3f0h_A 260 LLQINERLKEIK-----KHGGADAEVARIASQAADFRAKIKDLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDE 330 (376)
T ss_dssp HHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTTSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHh
Confidence 344444443211 12 367788888999999999998776 3333322 2333333 4555555 555554
Q ss_pred ccEEEeCCC--------cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 389 FHIYMTQDG--------RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 389 ~gI~i~pgg--------Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+||.+.+|. |+++.. .+++++++++++|++++++
T Consensus 331 ~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 331 YGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 499998762 999853 4889999999999998864
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=230.93 Aligned_cols=338 Identities=10% Similarity=0.041 Sum_probs=210.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.+...-|+ .++.+++++.+++.......| +.....+|++.+++++. . ++++. +++||+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~--~-----~~~v~--~~~sGs 121 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP--A-----LDKVR--FVNSGT 121 (434)
T ss_dssp TCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT--T-----CSEEE--EESSHH
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC--C-----CCEEE--EeCchH
Confidence 5678999999874222222 244444555555543323334 44566788888888863 1 45777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-eeeeeecCCCCC------------CcChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-ERTYHYYDPDSK------------SLDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~------------~~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+.....++++|++.+|+|.++...+...+.. ...+........ -.|+++|++++.+.++
T Consensus 122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (434)
T 3l44_A 122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH 201 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC
Confidence 999998533322337799999999998765433322221 111110000000 0188999998875434
Q ss_pred CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++.++|++|.+. +++.+++|.++|++||+++|+||+|.+| ..+. ......+ +.... +.|+||.++
T Consensus 202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~t~sK~~~ 273 (434)
T 3l44_A 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY---GGAQDLL-GVTPD---LTALGKVIG 273 (434)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS---SCHHHHH-TCCCS---EEEEEGGGG
T ss_pred CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc---cHHHHHc-CCCCC---eeehhhhhc
Confidence 567777766667777766 8888999999999999999999999988 4321 1122222 21122 457999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHH---hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQI---ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+|+|+||+++ +++ +++.+.+. ....+.+.+.+++.++.++|+... + +...++++++++.++
T Consensus 274 -~G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~--~~~~~~~~~~~~~l~ 337 (434)
T 3l44_A 274 -GGLPIGAYGG---KKE----IMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQ------Q--EGLYEKLDELGATLE 337 (434)
T ss_dssp -TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHHHHHHH
T ss_pred -CCcCeeeEEE---cHH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------c--ccHHHHHHHHHHHHH
Confidence 8999999964 888 77766552 123456778888888877775211 1 223344444444555
Q ss_pred HHHHh----hCCCCCccccccCcceeEec----CC---------C----HHHHHHHhhhccEEEeCCC----cEEeccCC
Q 013839 351 QNLEK----LGSSLNWEHITNQLGMFCFS----GL---------T----PYQVDRLAKEFHIYMTQDG----RISMAGVT 405 (435)
Q Consensus 351 ~~l~~----~~~~~~~~~~~~~~g~~~~~----~~---------~----~~~~~~ll~~~gI~i~pgg----Ris~~~~~ 405 (435)
+.|++ ++. .....+.+.++.|. .. + .++...+ .++||.+.|++ |+++.. +
T Consensus 338 ~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~rl~~~~-t 412 (434)
T 3l44_A 338 KGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLM-LQEGVNLAPSKYEAWFLTTEH-T 412 (434)
T ss_dssp HHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHH-HHTTEECCSSTTCCEECCTTC-C
T ss_pred HHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHH-HHCCeEEeecCCCcEEEeccc-C
Confidence 44443 342 12333444444431 01 1 2233444 56899999985 776544 8
Q ss_pred CCcHHHHHHHHHHHHHhhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~~ 425 (435)
++++++++++|+++++++..
T Consensus 413 ~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 413 KEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987653
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=235.11 Aligned_cols=342 Identities=12% Similarity=0.007 Sum_probs=211.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg 126 (435)
++...+|++.|.+...-|+ .++.+++.+.+++... ..|....|..++++++++++...... .. +++. +++||
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~--~~~gg 113 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPG--EGTHKIW--FGHSG 113 (439)
T ss_dssp TSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEE--EESSH
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEE--EeCCH
Confidence 5678999999986333232 3444555555555432 23444455556666666666332211 12 4777 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-CCCe--------------eeeeecCCCCCCc----ChHhHHH
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-QIPE--------------RTYHYYDPDSKSL----DFAALMD 187 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~--------------~~v~~~~~~~~~~----d~e~l~~ 187 (435)
++|+..+..+...+.++++|++.+|+|.++....... |... ..++.. ...... |+++|++
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~ 192 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTE 192 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHH
Confidence 9999998533222346788999999997665443333 2211 223321 110111 6899999
Q ss_pred Hhh-cCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 188 DIK-NAPDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 188 ~i~-~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
++. ..+++++++++++++|++|.+.+ .+.+++|.++|++||+++|+||+|.+|...+. ...... .+...+++
T Consensus 193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~~-~~~~~di~-- 266 (439)
T 3dxv_A 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFEH-EGFVPDIL-- 266 (439)
T ss_dssp HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGGG-TTCCCSEE--
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHHh-cCCCCCEE--
Confidence 993 32356788888888889988765 45599999999999999999999988765431 111111 12222232
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
|+||.++ +|+|+||+++ +++ +++.+.......+. .+.+++.++.+++.... + +...++++++
T Consensus 267 -s~sK~~~-~G~riG~~~~---~~~----~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~~~~~~~~~ 328 (439)
T 3dxv_A 267 -VLGKGLG-GGLPLSAVIA---PAE----ILDCASAFAMQTLH-GNPISAAAGLAVLETID------R--DDLPAMAERK 328 (439)
T ss_dssp -EECGGGG-TTSCCEEEEE---EHH----HHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TTHHHHHHHH
T ss_pred -EEcchhc-CCcceEEEEE---CHH----HHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cCHHHHHHHH
Confidence 8999999 6999999974 777 77766654334445 77888888777775321 1 2344455555
Q ss_pred HHHHHHHHHhhC--CCCCccccccCcceeEecCC---------C---H-HHHHHHhhhccEEEeCCC------cEEecc-
Q 013839 346 RTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL---------T---P-YQVDRLAKEFHIYMTQDG------RISMAG- 403 (435)
Q Consensus 346 ~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~---------~---~-~~~~~ll~~~gI~i~pgg------Ris~~~- 403 (435)
++.+++.|+++. .+ .+...++.+ .|+++.+ + . ++...++ ++||.+.|+| ||+++.
T Consensus 329 ~~~~~~~l~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~~~~~ 405 (439)
T 3dxv_A 329 GRLLRDGLSELAKRHP-LIGDIRGRG-LACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVGMNGNVLEFTPPLT 405 (439)
T ss_dssp HHHHHHHHHHHHHHCT-TEEEEEEET-TEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEESTTSCEEEECCCTT
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEEEE-EEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecCCCCCEEEEECCCC
Confidence 555555554431 11 123334444 4555533 1 2 2345554 5799999874 887532
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+++++++++++|+++++++.
T Consensus 406 ~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 406 ITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHTGG
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999998763
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=228.94 Aligned_cols=326 Identities=14% Similarity=0.061 Sum_probs=212.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|...+.-|+ .++.+++.+.+++..... ..| +.....++++.+++++ + .+++. +++|
T Consensus 55 ~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~g 122 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT-F-------AERVL--FMNS 122 (420)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS-S-------CSEEE--EESS
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEE--EeCC
Confidence 5678899998853122222 234444545555542211 113 2233456666666654 2 24677 8999
Q ss_pred chhHHHHHHHHHHHhC-------CC-CEEEEcCCCChhhHH-HHhhCCCC------------eeeeeecCCCCCCcChHh
Q 013839 126 GTGACRLFAEFQRRFH-------PE-SHIYFPDPTWSNHHN-IWRDAQIP------------ERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-------~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~e~ 184 (435)
|++|+.++. ..+.. +| ++|++++|+|.++.. .+...|.+ +..++. .|+++
T Consensus 123 gteA~~~al--~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~ 193 (420)
T 2pb2_A 123 GTEANETAF--KLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHA 193 (420)
T ss_dssp HHHHHHHHH--HHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHH
T ss_pred HHHHHHHHH--HHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHH
Confidence 999999984 33332 67 599999999977643 34444543 222221 38999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
|++++. +++++|++++++||+|. .++.+++++|.++|++||+++|+||+|.++.+.+. ......+ +...+++
T Consensus 194 le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~---~~~~~~~-~~~~dii 266 (420)
T 2pb2_A 194 VKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD---LFAYMHY-GVTPDIL 266 (420)
T ss_dssp HHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE
T ss_pred HHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc---HHHHHhc-CCCCCeE
Confidence 999987 57899999889998885 58999999999999999999999999988776531 1122222 2223333
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
||||.++ +|+|+||+++ +++ +++.+.......+.+.+.+++.++.++|+... + +...++++
T Consensus 267 ---t~sK~l~-~G~~iG~~~~---~~~----l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~~~~~~~ 327 (420)
T 2pb2_A 267 ---TSAKALG-GGFPVSAMLT---TQE----IASAFHVGSHGSTYGGNPLACAVAGAAFDIIN------T--PEVLQGIH 327 (420)
T ss_dssp ---EECGGGG-TTSCCEEEEE---CHH----HHTTCC----CCEECCCHHHHHHHHHHHHHHS------S--HHHHHHHH
T ss_pred ---Eeccccc-CCCceEEEEE---hHH----HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence 7899999 8999999974 777 66655543334456778888888877775321 1 34556677
Q ss_pred HHHHHHHHHHHhh--CCCCCccccccCcceeEecCC------CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcH
Q 013839 344 RKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL------TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNV 409 (435)
Q Consensus 344 ~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~------~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i 409 (435)
++++++.+.|+++ +.+ .+....+. |.|+++.+ +.+.+ +.+ .++||.+.|++ ||++. ..+++++
T Consensus 328 ~~~~~l~~~L~~~~~~~~-~~~~~~~~-g~~~~v~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~~~iRl~~~~~~t~eei 404 (420)
T 2pb2_A 328 TKRQQFVQHLQAIDEQFD-IFSDIRGM-GLLIGAELKPKYKGRARDFLYAG-AEAGVMVLNAGADVMRFAPSLVVEEADI 404 (420)
T ss_dssp HHHHHHHHHHHHHHHHHC-CEEEEEEE-TTEEEEEECGGGTTCHHHHHHHH-HHTTEECEESSTTEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CeEEEEec-ceEEEEEECCCchHHHHHHHHHH-HHCCCEEEeCCCCEEEEECCCCCCHHHH
Confidence 7777777777665 221 12223344 44555533 23444 555 45899999874 88853 3489999
Q ss_pred HHHHHHHHHHHHhh
Q 013839 410 NYLANAIHEVTRSE 423 (435)
Q Consensus 410 ~~~~~~l~~~l~~~ 423 (435)
++++++|++++++.
T Consensus 405 ~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 405 HEGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=226.10 Aligned_cols=335 Identities=15% Similarity=0.108 Sum_probs=218.4
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCc---ccHH--HHH-----HHHHhHc
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISAS---VSTK--MVE-----ESVKLVY 106 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~-----~ia~~l~ 106 (435)
++..+.+... ...+.|+|..|+. +.++.+.+.+.+.+.......|+... |.+. +++ .+++++
T Consensus 11 i~~~~~~~~~-~~~~~i~~~~~~~------~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~- 82 (407)
T 2dkj_A 11 LFELIALEEK-RQREGLELIASEN------FVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALF- 82 (407)
T ss_dssp HHHHHHHHHH-HHHTSEECCTTCC------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH-HhhcceeeccCCC------CCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHh-
Confidence 3444444332 2257899999983 22444444433443322234465543 5543 444 555665
Q ss_pred CCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCCCCeeeeeec-CCCCCCcCh
Q 013839 107 GKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQIPERTYHYY-DPDSKSLDF 182 (435)
Q Consensus 107 ~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~-~~~~~~~d~ 182 (435)
+.. ++++. +.+|++|+.++ +..++.+||+|++++|+|..+. ..++..|.++..++.. +++++.+|+
T Consensus 83 g~~-----~~~i~---~~sGt~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 152 (407)
T 2dkj_A 83 GAA-----WANVQ---PHSGSQANMAV--YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDL 152 (407)
T ss_dssp TCS-----EEECC---CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCH
T ss_pred CCC-----cceEE---ecchHHHHHHH--HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCH
Confidence 332 23344 45566788888 6666789999999999998873 4444555543444431 234678999
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCe
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+++++.+++ .+++++++++|+|| ...+ +++|.++|++||+++|+||+|.. +.+.+.... . + ...
T Consensus 153 ~~l~~~l~~--~~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~---~---~~~ 217 (407)
T 2dkj_A 153 EEVRRLALE--HRPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--P---L---PYA 217 (407)
T ss_dssp HHHHHHHHH--HCCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--C---T---TTC
T ss_pred HHHHHHHhh--cCCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCC--c---c---ccc
Confidence 999999973 25678888999998 3343 78999999999999999999876 443321100 0 1 125
Q ss_pred EEEEecccccccccCCcccEEEEEecC-hhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVD-SKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+++++|+||. ++|+|+||+++ + ++ +++.+....... ..+++.....++..++.... .+++++.+
T Consensus 218 di~~~s~sK~--l~g~~~G~~~~---~~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~ 283 (407)
T 2dkj_A 218 HVVTSTTHKT--LRGPRGGLILS---NDPE----LGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL-----QPEFKEYS 283 (407)
T ss_dssp SEEEEESSGG--GCCCSCEEEEE---SCHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred cEEEEecccc--CCCCCceEEEE---CCHH----HHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH-----HhhHHHHH
Confidence 7889999995 46899999964 6 77 777776654332 23333333334445554310 15567888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecCC-----CHHHHHHHhhhccEEEeCC------------C--cE
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD------------G--RI 399 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg------------g--Ri 399 (435)
++++++++++.+.|+++| +.+.. +..+.++|+.+ +.+.+.+.|.++||.+.++ + |+
T Consensus 284 ~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi 359 (407)
T 2dkj_A 284 RLVVENAKRLAEELARRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRI 359 (407)
T ss_dssp HHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHhCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceee
Confidence 899999999999999886 34443 34667777744 4555655557799999874 1 99
Q ss_pred Eecc-----CCCCcHHHHHHHHHHHHHh
Q 013839 400 SMAG-----VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 400 s~~~-----~~~e~i~~~~~~l~~~l~~ 422 (435)
+++. .+++++++++++|++++++
T Consensus 360 s~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 360 GTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 9852 5899999999999999876
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=227.49 Aligned_cols=338 Identities=13% Similarity=0.088 Sum_probs=218.4
Q ss_pred CCCCeeeeeccee-cCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAY-RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.++++|+.|.+ .|......++.+.+.+...+..+ ...|.+..+..+|++++++++. . +++. +|+||
T Consensus 32 ~g~~~~~~~~g~~ylD~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~-~-------~~v~--~t~gg 100 (467)
T 1ax4_A 32 AGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITG-DEAYAGSRNYYDLKDKAKELFN-Y-------DYII--PAHQG 100 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHHTC-CCCSSSCHHHHHHHHHHHHHHC-C-------CEEE--EESSH
T ss_pred cCcCcccCCCCceeeecccCcCCHHHHHHHHHHHhhc-ccccccCccHHHHHHHHHHHcC-C-------CcEE--EcCCc
Confidence 4566777887763 23211111223333333444333 3458888899999999999983 2 2666 89999
Q ss_pred hhHHHHHHHHHHHhC----CCCE---EEEcCCCChhhHHHHhhCCCCeeeeeecC---C-----CCCCcChHhHHHHhhc
Q 013839 127 TGACRLFAEFQRRFH----PESH---IYFPDPTWSNHHNIWRDAQIPERTYHYYD---P-----DSKSLDFAALMDDIKN 191 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~----~gd~---Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---~-----~~~~~d~e~l~~~i~~ 191 (435)
++|+.++ +..++. +||+ |+++.+.|..+...+...|++++.++... . .++.+|+++|++++++
T Consensus 101 t~A~~~a--l~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~ 178 (467)
T 1ax4_A 101 RGAENIL--FPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 178 (467)
T ss_dssp HHHHHHH--HHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHh
Confidence 9999988 555666 9998 99987777887888888898887665421 1 1357899999999974
Q ss_pred CC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC---c-------cCCCCcccHHHHH-Hhhhc
Q 013839 192 AP-DSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG---F-------ASGDLDKDAQAIR-IFLED 258 (435)
Q Consensus 192 ~~-~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~---~-------~~~~~~~~~~~~~-~~~~~ 258 (435)
.. +++++|++++||||| |.+++.+++++|.++|++||+++|+|+++.. + .+.+. +...+. .....
T Consensus 179 ~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 256 (467)
T 1ax4_A 179 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMYKY 256 (467)
T ss_dssp HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHGGG
T ss_pred cCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC--chhhhhhhhccc
Confidence 21 268999999999999 8999999999999999999999999998432 0 22221 122221 00011
Q ss_pred CCeEEEEecccccccccCCcc-cEEEEEecCh-hHHHHHHHHHHHHhhc-----cccCCChhHHHHHHHHhCChhhHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGHRV-GCLSILCVDS-KQAAAIRSQIQQIARA-----MYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.+ +++.|+||.+|++ + ||++ ++++ + +++.+...... .....+...+.++...+....
T Consensus 257 ~d--~~~~s~sK~~g~~---~Gg~~~--~~d~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----- 320 (467)
T 1ax4_A 257 AD--ALTMSAKKDPLLN---IGGLVA--IRDNEE----IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT----- 320 (467)
T ss_dssp CS--EEEEETTSTTCCS---SCEEEE--ESSCHH----HHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT-----
T ss_pred cc--eEEEeccccCCCC---cceEEE--eCCHHH----HHHHHHhhccccccccccCCccchHHHHHHHHHHHhh-----
Confidence 22 4568999999865 3 5553 4336 7 66555543321 111223332332322332110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-------CC-----HH-HHHHHhhhccEEEeC---
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG-------LT-----PY-QVDRLAKEFHIYMTQ--- 395 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~-------~~-----~~-~~~~ll~~~gI~i~p--- 395 (435)
+ +...++..++++.+.+.|++.+ +.+..+.+|+++|++ +. .+ ++..+++++||.+.|
T Consensus 321 -~--~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~ 393 (467)
T 1ax4_A 321 -E--EEYLHYRIGQVKYLGDRLREAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGS 393 (467)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESH
T ss_pred -h--hhHHHHHHHHHHHHHHHHHhCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCc
Confidence 0 1112223355677888887754 445567888888876 32 23 345554788999987
Q ss_pred ---------C-------C--cEEecc--CCCCcHHHHHHHHHHHHHhh
Q 013839 396 ---------D-------G--RISMAG--VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 396 ---------g-------g--Ris~~~--~~~e~i~~~~~~l~~~l~~~ 423 (435)
| + ||++.. .+++++++++++|++++++.
T Consensus 394 ~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 394 FLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp HHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 2 3 888862 47899999999999988764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=224.48 Aligned_cols=315 Identities=11% Similarity=0.020 Sum_probs=214.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
...|||+.|.+ +.++.+.+.+.+.+.. ..|.+..+..++++++++++ +.. +++ ++.+|++|
T Consensus 30 ~~~id~~~~~~------~~~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~-~~~-------~~v--~~~~Gt~a 90 (399)
T 2oga_A 30 VPFLDLKAAYE------ELRAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYC-ETD-------HAV--GVNSGMDA 90 (399)
T ss_dssp BCSCCHHHHHH------HTHHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHT-TSS-------EEE--EESCHHHH
T ss_pred CcccccCcCCC------CCCHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHH-CCC-------eEE--EecCHHHH
Confidence 47889999986 2223333333333322 24767788899999999998 321 334 68888999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++++ |+|||
T Consensus 91 ~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~---~~n~t 161 (399)
T 2oga_A 91 LQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEP-HEDHPTLDPLLVEKAIT---PRTRALL---PVHLY 161 (399)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CSSSSSBCHHHHHHHCC---TTEEEEC---CBCGG
T ss_pred HHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEec-CCCCCCcCHHHHHHhcC---CCCeEEE---EeCCc
Confidence 9888 6666 789999999999999999999999999999988 34467899999999997 5677776 47899
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEe
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~ 286 (435)
|...+ +++|.++|+++|+++|+|++|..+...+. .. +... .++++.|+ ||.+|.+| |+||++ +
T Consensus 162 G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~------~~~~--~di~~~S~~~sK~~~~~G-~~g~~~--~ 226 (399)
T 2oga_A 162 GHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG-RR------IGAG--SSVAAFSFYPGKNLGCFG-DGGAVV--T 226 (399)
T ss_dssp GCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT-EE------TTCT--TCEEEEECCTTSSSCCSS-CCEEEE--E
T ss_pred CCccC---HHHHHHHHHHcCCEEEEECcccccCccCC-ee------cccc--cCEEEEeCCCCccCCcCC-ceEEEE--e
Confidence 99875 67999999999999999999975532111 10 1111 24788888 79999779 999986 4
Q ss_pred cChhHHHHHHHHHHHHhhcc------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 287 VDSKQAAAIRSQIQQIARAM------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
.+++ +++.+....... ....+.+.+.++...+.. ++...++.+++++.+.+.|+
T Consensus 227 ~~~~----~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~ 292 (399)
T 2oga_A 227 GDPE----LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH----------LDSWNGRRSALAAEYLSGLA 292 (399)
T ss_dssp SCHH----HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 3477 666666543321 113455555555444432 22344455566777788887
Q ss_pred hhCCCCCcccc-ccCcceeEec-----CCCHHHHHHHhhhccEEEeCC-----------------------------C--
Q 013839 355 KLGSSLNWEHI-TNQLGMFCFS-----GLTPYQVDRLAKEFHIYMTQD-----------------------------G-- 397 (435)
Q Consensus 355 ~~~~~~~~~~~-~~~~g~~~~~-----~~~~~~~~~ll~~~gI~i~pg-----------------------------g-- 397 (435)
+++. +.+. .+..+.++|. ..+.+.+.+.|.++||.+.++ +
T Consensus 293 ~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l 369 (399)
T 2oga_A 293 GLPG---IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVL 369 (399)
T ss_dssp TCTT---CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEE
T ss_pred cCCC---ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEE
Confidence 6521 2222 2334444442 235555544556789998752 2
Q ss_pred cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||++. ..+++++++++++|+++++++.
T Consensus 370 Ri~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 370 SLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66654 2378999999999999887643
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=226.73 Aligned_cols=340 Identities=10% Similarity=-0.008 Sum_probs=215.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+|++.|.+...-++ .++++++++.+++.... ...|+. ....++++.+++++. .. +++|. +++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~~-~~-----~~~v~--~~~ 110 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMTP-QP-----LECVF--LAD 110 (429)
T ss_dssp TSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHSC-TT-----CCEEE--EES
T ss_pred CCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhCC-CC-----CCEEE--EeC
Confidence 4567889988874222221 23444444444443211 113433 334678888888762 21 56888 999
Q ss_pred CchhHHHHHHHHH-HHhC----CCCEEEEcCCCChhhHHHHh-hCC-------------CCeeeeeecC---CCCC-CcC
Q 013839 125 SGTGACRLFAEFQ-RRFH----PESHIYFPDPTWSNHHNIWR-DAQ-------------IPERTYHYYD---PDSK-SLD 181 (435)
Q Consensus 125 gg~~a~~~~~~~~-~~~~----~gd~Vlv~~p~y~~~~~~~~-~~g-------------~~~~~v~~~~---~~~~-~~d 181 (435)
||++|+.++.... .... |||+|++.+|+|.++..... ..| ..+..++... .+.+ .+|
T Consensus 111 ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 190 (429)
T 1s0a_A 111 SGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGG
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHH
Confidence 9999999885322 1222 68999999999987644222 211 1233444311 1123 589
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSA-HNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+++|++++++.++++++++++.. +||||. ..+.+++++|.++|++||+++|+||+|.+++..+. ...... .+..
T Consensus 191 ~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~~-~~~~ 266 (429)
T 1s0a_A 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEH-AEIA 266 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTCC
T ss_pred HHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhhh-cCCC
Confidence 99999998743235666666555 799996 55788899999999999999999999988765431 111111 1222
Q ss_pred CeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh-----hccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA-----RAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
.++ .|+||.++ +| +|+||+++ +++ +++.+.... ...+.+.+.+++.++.++++... +
T Consensus 267 ~d~---~t~sK~l~-~G~~~iG~~~~---~~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~------~ 329 (429)
T 1s0a_A 267 PDI---LCLGKALT-GGTMTLSATLT---TRE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE------S 329 (429)
T ss_dssp CSE---EEECGGGG-TSSSCCEEEEE---CHH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH------T
T ss_pred CCE---EEeccccc-CCCccceEEEe---CHH----HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH------h
Confidence 233 37899998 68 99999974 777 777776521 22345678888888877775311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCCC---cEEec-c
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQDG---RISMA-G 403 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pgg---Ris~~-~ 403 (435)
....++++++++.+.+.|++++ .+ .+....+. |.|+|+.+ +.+.+ ..+ .++||.+.+.+ ||+++ .
T Consensus 330 --~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~~iRis~~~~ 404 (429)
T 1s0a_A 330 --GDWQQQVADIEVQLREQLAPARDAE-MVADVRVL-GAIGVVETTHPVNMAALQKFF-VEQGVWIRPFGKLIYLMPPYI 404 (429)
T ss_dssp --CHHHHHHHHHHHHHHHHHGGGGGCT-TEEEEEEE-TTEEEEEESSCBCHHHHHHHH-HHTTEECCCBTTEEEECCCTT
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEEe-eEEEEEEECCcccHHHHHHHH-HHCCCEEeccCCEEEEECCCC
Confidence 2345667777888888887753 11 13333344 44666643 44444 555 46899999865 89854 3
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 013839 404 VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++++++++++|++++++.
T Consensus 405 ~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 405 ILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSSG
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 38899999999999887543
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=219.99 Aligned_cols=304 Identities=9% Similarity=-0.039 Sum_probs=204.2
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEE
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYF 148 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv 148 (435)
++..+.+.+.+..+ ...|.+..+..++++++++++. . ++.+. +.+|++|+.++ +.++ +.+||+|++
T Consensus 17 ~~~~~a~~~~l~~~-~~~~~~~~~~~~l~~~la~~~~-~------~~~i~---~~sGt~al~~~--l~~l~~~~gd~Vi~ 83 (388)
T 1b9h_A 17 DAERNGLVRALEQG-QWWRMGGDEVNSFEREFAAHHG-A------AHALA---VTNGTHALELA--LQVMGVGPGTEVIV 83 (388)
T ss_dssp HHHHHHHHHHHHTS-CCBTTTCSHHHHHHHHHHHHTT-C------SEEEE---ESCHHHHHHHH--HHHTTCCTTCEEEE
T ss_pred HHHHHHHHHHHHcC-CeeecCCHHHHHHHHHHHHHhC-C------CeEEE---eCCHHHHHHHH--HHHcCCCCcCEEEE
Confidence 44545555555443 3457777889999999999983 3 12444 45568999888 6666 789999999
Q ss_pred cCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 013839 149 PDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 149 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 228 (435)
+.|+|..+...++..|++++.+++ +++++.+|+++|+++++ +++++|+ |+||||.+.+ +++|.++|++||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~---l~~i~~la~~~~ 153 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMAD---MDALAKISADTG 153 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCC---HHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhcC---cCceEEE---EeCCccCcCC---HHHHHHHHHHcC
Confidence 999999999999999999999998 34468899999999997 5677766 8999999865 568999999999
Q ss_pred ceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH--HHHHHHHhhc
Q 013839 229 HFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI--RSQIQQIARA 305 (435)
Q Consensus 229 ~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~--~~~l~~~~~~ 305 (435)
+++|+|++|.. ..+.+. + + ... .++.+.||||..+++|.|+||++ ++++. + ++.+......
T Consensus 154 ~~li~D~a~~~g~~~~~~--~---~---~~~--~~i~~~S~s~~K~l~g~~~G~~~--~~~~~----~~~~~~~~~~~~~ 217 (388)
T 1b9h_A 154 VPLLQDAAHAHGARWQGK--R---V---GEL--DSIATFSFQNGKLMTAGEGGAVV--FPDGE----TEKYETAFLRHSC 217 (388)
T ss_dssp CCBCEECTTCTTCEETTE--E---G---GGS--SSCEEEECCTTSSSCSSSCEEEE--ECTTC----HHHHHHHHHHTBT
T ss_pred CEEEEecchhcCCccCCe--e---c---ccc--cceEEEEccCCCcccCCCeEEEE--ECCHH----HHHHHHHHHHHhC
Confidence 99999999875 333221 1 1 111 16788999977767778999996 43334 3 3444332211
Q ss_pred c-----------ccCCC-hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc------c
Q 013839 306 M-----------YGSPP-VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT------N 367 (435)
Q Consensus 306 ~-----------~~~~~-~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~ 367 (435)
. ..+.+ .+.+..++.++.. .+++++.+++++++++++.+.|++++. +.... +
T Consensus 218 ~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~ 287 (388)
T 1b9h_A 218 GRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-------LARLDEQIAVRDERWTLLSRLLGAIDG---VVPQGGDVRADR 287 (388)
T ss_dssp TCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTSTT---CEECCCCTTCCB
T ss_pred CCCccCccceeecccccCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCC---ccccCCCcCCCc
Confidence 0 00111 1112222222211 134556777888889999999988631 33333 3
Q ss_pred CcceeEecCCC------HHHHHHHhhhccEEEeCCC-------------------------------------cEEec-c
Q 013839 368 QLGMFCFSGLT------PYQVDRLAKEFHIYMTQDG-------------------------------------RISMA-G 403 (435)
Q Consensus 368 ~~g~~~~~~~~------~~~~~~ll~~~gI~i~pgg-------------------------------------Ris~~-~ 403 (435)
.+++++|+.+. .+.+.+.|.++||.+.++. ||++. .
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 367 (388)
T 1b9h_A 288 NSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVL 367 (388)
T ss_dssp CCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGG
T ss_pred cceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCC
Confidence 45678887552 3344444456899997430 45543 3
Q ss_pred C-CCCcHHHHHHHHHHHHHh
Q 013839 404 V-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 404 ~-~~e~i~~~~~~l~~~l~~ 422 (435)
. ++++++++++.|++++++
T Consensus 368 ~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 368 LAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp GSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 4 678999999999988753
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=221.81 Aligned_cols=290 Identities=13% Similarity=0.101 Sum_probs=202.0
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh---CCCCEEEEc-CCCChhhH-HHHhhCCCCe
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF---HPESHIYFP-DPTWSNHH-NIWRDAQIPE 167 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~ 167 (435)
...++++.+++++.... ..++++++ +++||++|+.++ +..+. .+||+|+++ .|+|..+. ..++..|+++
T Consensus 39 ~~~~~~~~l~~~~~~~~--~~~~~~v~--~~~g~t~al~~~--~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAA--ASKSQPFV--LAGSGTLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHTTCCG--GGTCEEEE--EESCTTHHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCC--CCCCceEE--EcCchHHHHHHH--HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 46678899999984321 12356777 899999999998 66666 899999888 55666553 6677889999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCCCC
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~~~ 245 (435)
+.++.. ++++.+|+++|++++++ .+++++++++|+||||.+++ +++|.++|++| |+++|+|++|...... .
T Consensus 113 ~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~~-~ 185 (385)
T 2bkw_A 113 DVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCEE-F 185 (385)
T ss_dssp EEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTSC-C
T ss_pred EEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCcc-c
Confidence 998862 34567999999999973 26788999999999999987 55999999999 9999999998632211 1
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHH-HH------------------H----H
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRS-QI------------------Q----Q 301 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~-~l------------------~----~ 301 (435)
++ ...+.++++.|+||.+ |.+| +||+++ +++ +++ .+ . .
T Consensus 186 -----~~----~~~~~d~~~~s~~K~~~~~~G--~G~~~~---~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (385)
T 2bkw_A 186 -----EF----DEWGVDFALTASQKAIGAPAG--LSISLC---SSR----FMDYALNDSKNGHVHGYFSSLRRWTPIMEN 247 (385)
T ss_dssp -----CT----TTTTCSEEEEESSSTTCCCSC--EEEEEE---CHH----HHHHHTCHHHHCCCSCSTTCHHHHHHHHHH
T ss_pred -----cc----cccCceEEEecCccccccCCc--ceEEEE---cHH----HHHHHHhhccCCCCCceeecHHHHhhHHHh
Confidence 11 1123568899999965 4566 489864 776 333 22 1 1
Q ss_pred Hhhc--c-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCCcccccc-----Cccee
Q 013839 302 IARA--M-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL-EKLGSSLNWEHITN-----QLGMF 372 (435)
Q Consensus 302 ~~~~--~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~-----~~g~~ 372 (435)
.... . ..+++...+.++..++.... ...+++.+++++++++++.+.| ++++ +.+..+ ..+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~~~~~ 318 (385)
T 2bkw_A 248 YEAGKGAYFATPPVQLINSLDVALKEIL-----EEGLHKRWDLHREMSDWFKDSLVNGLQ----LTSVSRYPSNMSAHGL 318 (385)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHTTTC----CEESSCSSSTTBCSSC
T ss_pred hhccCCCCCCCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHhcC----ceecccCcccccCCce
Confidence 1110 0 13466666666666664321 1225677888999999999999 8765 344432 24567
Q ss_pred EecCCC-HHHHHHHhhhccEEEeCCC---------cEE-ec----cCCCCcHHHHHHHHHHHHHh
Q 013839 373 CFSGLT-PYQVDRLAKEFHIYMTQDG---------RIS-MA----GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 373 ~~~~~~-~~~~~~ll~~~gI~i~pgg---------Ris-~~----~~~~e~i~~~~~~l~~~l~~ 422 (435)
+|+.+. .+.+.+.|.++||.+.+|. ||+ ++ ..+++++++++++|++++++
T Consensus 319 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 319 TAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEecCCHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 776553 4444334457899999861 999 65 24889999999999988754
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=226.38 Aligned_cols=336 Identities=14% Similarity=0.046 Sum_probs=214.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.+.+.-|. .++.+++.+.+++...... |.+.....+|++.+++++.+ ++++. +++||
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~--~~~~G 118 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPS-------IEIVR--MVNSG 118 (429)
T ss_dssp TTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEE--EESSH
T ss_pred CCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEE--EeCCh
Confidence 35688999999874232222 2444555555555433223 34556778899999998731 45777 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCCeeeeeecCCCCCC------------cChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIPERTYHYYDPDSKS------------LDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------------~d~e~l~~~i~~~~ 193 (435)
++|+..+..+.....++++|++.+|+|.++...... .|.....++........ -|+++|++++.+.+
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 198 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG 198 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence 999999853332233678999999999766433322 22222211110011000 17899999887543
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
+++++++++.++|++|... +++.+++|.++|++||+++|+||+|.+| ..+ .......+ +.... +.++||.+
T Consensus 199 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~t~sK~~ 270 (429)
T 3k28_A 199 DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQGYY-GVTPD---LTCLGKVI 270 (429)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHHHHH-TCCCS---EEEECGGG
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHHHHh-CCCCc---eehhhhhh
Confidence 4567777766666777665 6788999999999999999999999888 443 12222222 22222 34799999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
+ .|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... ++..++++++++++
T Consensus 271 ~-~G~~iG~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~~~~~~~l 333 (429)
T 3k28_A 271 G-GGLPVGAYGG---KAE----IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEFERKAEML 333 (429)
T ss_dssp G-TTSCCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEE---cHH----HHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 8 5999999964 888 777665422 23356778888888888886532 34455566666666
Q ss_pred HHHHHhh----CCCCCccccccCcceeEecCC-------------C----HHHHHHHhhhccEEEeCCC----cEEeccC
Q 013839 350 RQNLEKL----GSSLNWEHITNQLGMFCFSGL-------------T----PYQVDRLAKEFHIYMTQDG----RISMAGV 404 (435)
Q Consensus 350 ~~~l~~~----~~~~~~~~~~~~~g~~~~~~~-------------~----~~~~~~ll~~~gI~i~pgg----Ris~~~~ 404 (435)
.+.|+++ +. +...++.+.++.|.-. + .++...+ .++||.+.|+| |+++..
T Consensus 334 ~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~r~~~~~- 408 (429)
T 3k28_A 334 EAGLRKAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREM-VEQGVFLPPSQFEGLFLSTVH- 408 (429)
T ss_dssp HHHHHHHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTTSCBCCCTTC-
T ss_pred HHHHHHHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHH-HHCCeEEecCCCCCEEEECCC-
Confidence 6666543 32 2233444554443210 1 2333555 46899999975 887654
Q ss_pred CCCcHHHHHHHHHHHHHhh
Q 013839 405 TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++++|+++++++
T Consensus 409 t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 409 SDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=227.63 Aligned_cols=335 Identities=12% Similarity=0.012 Sum_probs=206.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..+|+..|.+...-|+ .++.+++.+.+++.......| +.....++.+.+++++. . ++++. +++||+
T Consensus 50 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~--~-----~~~v~--~~~ggs 118 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP--S-----IEMVR--FVNSGT 118 (427)
T ss_dssp TSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST--T-----CSEEE--EESSHH
T ss_pred CCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC--C-----CCEEE--EeCCHH
Confidence 5678999999975332222 344555555556554322333 33334455555555542 1 46787 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-eeeeeecCCCCCC------------cChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-ERTYHYYDPDSKS------------LDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~------------~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+......+++|++.+|+|.++...+...+.. ...+......+.. -|+++|++++++.++
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 198 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG 198 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 999998543333345589999999997654333222111 1111100011000 189999999986545
Q ss_pred CcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++.++|++|...+ .+.+++|.++|++||+++|+||+|.++ ..+ .......+ +.... +.|+||.++
T Consensus 199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~t~sK~~~ 270 (427)
T 3fq8_A 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQEKF-GVTPD---LTTLGKIIG 270 (427)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHHHT-TCCCS---EEEECGGGG
T ss_pred CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhHhc-CCCCC---hhhhhhhhh
Confidence 7788888888888888775 555999999999999999999999988 432 11222222 22112 468999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... + +...++++++++.++
T Consensus 271 -~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~------~--~~~~~~~~~~~~~~~ 334 (427)
T 3fq8_A 271 -GGLPVGAYGG---KRE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR------Q--PGTYEYLDQITKRLS 334 (427)
T ss_dssp -TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHHHHHHH
T ss_pred -CCcceEEEEE---cHH----HHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHH------h--cCHHHHHHHHHHHHH
Confidence 8999999964 888 777665421 23344567888888777774211 0 123334444444444
Q ss_pred HHHHh----hCCCCCccccccCcceeEecCC-----C------------H-HHHHHHhhhccEEEeCCC--cEEecc-CC
Q 013839 351 QNLEK----LGSSLNWEHITNQLGMFCFSGL-----T------------P-YQVDRLAKEFHIYMTQDG--RISMAG-VT 405 (435)
Q Consensus 351 ~~l~~----~~~~~~~~~~~~~~g~~~~~~~-----~------------~-~~~~~ll~~~gI~i~pgg--Ris~~~-~~ 405 (435)
+.|++ ++. ....+..|+++|+.+ . . ++...+ .++||.+.|++ |+++.. .+
T Consensus 335 ~~l~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~~r~~~~~~~t 409 (427)
T 3fq8_A 335 DGLLAIAQETGH----AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQFEAGFTSLAHT 409 (427)
T ss_dssp HHHHHHHHHTTC----CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTTSCEECCTTCC
T ss_pred HHHHHHHHhCCC----CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHH-HHCCcEEecCCCCCEEeeCcCC
Confidence 44443 332 122233455665533 1 1 233455 56899999987 776543 38
Q ss_pred CCcHHHHHHHHHHHHHh
Q 013839 406 TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~ 422 (435)
++++++++++|++++++
T Consensus 410 ~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 410 EEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999998864
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=222.39 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=216.2
Q ss_pred eeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC-CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHH
Q 013839 54 NLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS-ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRL 132 (435)
Q Consensus 54 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~ 132 (435)
+|+.|+| +. +.|+...+.+.+.+..+ .|++ ..+..++++++++++. . ++++ +++||++|+.+
T Consensus 20 ~l~~~~p-~~---~~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~-~-------~~v~--~~~ggt~al~~ 82 (424)
T 2po3_A 20 PLLVGRP-NR---IDRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAG-V-------RHAV--ATCNATAGLQL 82 (424)
T ss_dssp CEETTCC-CC---CCHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHT-S-------SEEE--EESCHHHHHHH
T ss_pred cccccCC-CC---CChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhC-C-------CeEE--EeCCHHHHHHH
Confidence 6889986 33 33444444444444322 3877 7889999999999983 2 2566 89999999998
Q ss_pred HHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCC
Q 013839 133 FAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDP 212 (435)
Q Consensus 133 ~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~ 212 (435)
+ +.++ .+||+|++++|+|..+...++..|++++.+++ +++++.+|+++|++.++ +++++++++ ||||..
T Consensus 83 ~--l~~l-~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~---~~tG~~- 151 (424)
T 2po3_A 83 L--AHAA-GLTGEVIMPSMTFAATPHALRWIGLTPVFADI-DPDTGNLDPDQVAAAVT---PRTSAVVGV---HLWGRP- 151 (424)
T ss_dssp H--HHHH-TCCSEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTSSBCHHHHGGGCC---TTEEEEEEE---CGGGCC-
T ss_pred H--HHHc-CCCCEEEECCCccHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhhC---cCCcEEEEE---CCCCCc-
Confidence 8 4444 47899999999999999999999999999998 34567899999999887 567888874 589986
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhH
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQ 291 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~ 291 (435)
.++++|.++|++||+++|+|++|. ++.+++ . ++ ....+ +++.||||..+++|+|+||++ +++++
T Consensus 152 --~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~---~~---~~~~d--i~~~S~sk~K~l~~~~~G~~v--~~~~~- 216 (424)
T 2po3_A 152 --CAADQLRKVADEHGLRLYFDAAHALGCAVDG--R---PA---GSLGD--AEVFSFHATKAVNAFEGGAVV--TDDAD- 216 (424)
T ss_dssp --CCHHHHHHHHHHTTCEEEEECTTCTTCEETT--E---ET---TSSSS--EEEEECCTTSSSCCSSCEEEE--ESCHH-
T ss_pred --CCHHHHHHHHHHcCCEEEEECccccCCeECC--e---ec---ccccC--EEEEeCCCCCCccCCCCeEEE--eCCHH-
Confidence 467799999999999999999998 465542 1 11 11122 889999966666779999996 42377
Q ss_pred HHHHHHHHHHHhhccccC---------CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 292 AAAIRSQIQQIARAMYGS---------PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~---------~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
+++.+.......... ...+.+.+++.++.. .+.++.+.++.+++++++.+.|++++ ++
T Consensus 217 ---l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~---g~ 283 (424)
T 2po3_A 217 ---LAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS-------LDAFPEVIDRNRRNHAAYREHLADLP---GV 283 (424)
T ss_dssp ---HHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTCSCT---TE
T ss_pred ---HHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCC---Cc
Confidence 777666544321111 001223333333321 13455666777777778888887652 14
Q ss_pred cccc-cCcc---eeEe-c-------CCCHHHHHHHhhhccEEEeCC-C---------------------c-----EEec-
Q 013839 363 EHIT-NQLG---MFCF-S-------GLTPYQVDRLAKEFHIYMTQD-G---------------------R-----ISMA- 402 (435)
Q Consensus 363 ~~~~-~~~g---~~~~-~-------~~~~~~~~~ll~~~gI~i~pg-g---------------------R-----is~~- 402 (435)
.+.. +.++ +++| + +.+.+.+.+.|.++||.+.+. + | |+++
T Consensus 284 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~ 363 (424)
T 2po3_A 284 LVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPT 363 (424)
T ss_dssp EECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECC
T ss_pred cccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeC
Confidence 4443 3332 2333 3 345666655667799999752 0 3 6653
Q ss_pred --cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 403 --GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 403 --~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
..+++++++++++|++++++..+
T Consensus 364 ~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 364 GTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 34789999999999999876554
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=226.09 Aligned_cols=347 Identities=11% Similarity=0.013 Sum_probs=208.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.+...-|. .++.+++++.+++... ...|....+..+.++++++++..... ...++|. +++||+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~ggs 121 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGY-GRKDFAEAARRQMEEL-PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVF--YTNSGS 121 (459)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHC-SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEE--EESSHH
T ss_pred CCCEEEECCCchhcccCCC-CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCchH
Confidence 5678999999864232332 2344555555555422 21233333444555555555522111 1145777 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecC--C-CCCCcC----
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYD--P-DSKSLD---- 181 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d---- 181 (435)
+|+..+..+.... .++++|++.+|+|.++.......+. .+..++... . +++ +|
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~ 200 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence 9999984332211 2569999999999887654443322 122232100 0 111 34
Q ss_pred ----hHhHHHHhhcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNAP-DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++|++.+.+.. +++++++++.++|++|. ..+++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~~~~ 277 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE---WFGHQHF 277 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhhc
Confidence 788888886422 34566666666666666 44899999999999999999999999998876541 1122222
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH---HHhhccccCCChhHHHHHHHHhCChhhHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ---QIARAMYGSPPVHGILLVATILSDPNLKSLWI 332 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~ 332 (435)
+...++ .+|||.++..|+|+||+++ +++ +++.+. ......+.+.+.+++.++.++|+...
T Consensus 278 -~~~pdi---~t~sK~l~gg~~~lg~v~~---~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------ 340 (459)
T 4a6r_A 278 -GFQPDL---FTAAKGLSSGYLPIGAVFV---GKR----VAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALR------ 340 (459)
T ss_dssp -TCCCSE---EEECGGGGTTSSCCEEEEE---CHH----HHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHH------
T ss_pred -CCCCCe---eehhhhhcCCCCCccceee---CHH----HHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHh------
Confidence 222222 3689999855599999964 888 777776 32333456778888888888876321
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH-HhhCCCCCccccccCcceeEecCC--C-------------HHHH-HHHhhhccEEEe
Q 013839 333 DEVKIMADRIQ-RKRTTLRQNL-EKLGSSLNWEHITNQLGMFCFSGL--T-------------PYQV-DRLAKEFHIYMT 394 (435)
Q Consensus 333 ~~~~~~~~~~~-~~~~~l~~~l-~~~~~~~~~~~~~~~~g~~~~~~~--~-------------~~~~-~~ll~~~gI~i~ 394 (435)
+ +...++++ ++.+.+++.| +.+.....+....+.+. |+++.+ + ...+ ..+ .++||.+.
T Consensus 341 ~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~ 416 (459)
T 4a6r_A 341 D--EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM-VQAFTLVKNKAKRELFPDFGEIGTLCRDIF-FRNNLIMR 416 (459)
T ss_dssp H--TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT-EEEEEECSBTTTTBCCSSTTHHHHHHHHHH-HHTTEECE
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCccccccccchHHHHHHHHHHH-HHCCeEEe
Confidence 1 12333344 4444444444 33321012334455555 433321 0 2334 545 46799999
Q ss_pred CCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 395 QDG---RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 395 pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
|+| ||++. ..+++++++++++|++++++...
T Consensus 417 ~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 417 ACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp EETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 976 88843 23899999999999999987654
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=223.87 Aligned_cols=348 Identities=11% Similarity=0.018 Sum_probs=213.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...||+..|.+...-|. .++.+++++.+++... ...|....+..++++++++++..... ...+++. +++||+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~gGs 122 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAKNL-AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVY--FGLSGS 122 (460)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHH-SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEE--EESSHH
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHhhCC--CCcCEEE--EeCchH
Confidence 5678999999853222222 2344445444554422 12233333444555555555522110 1145777 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecC---CCCCCcC----
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYD---PDSKSLD---- 181 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~---~~~~~~d---- 181 (435)
+|+..+..+.... .++++|++.+|+|.++.......+. .+..++... .++.+.+
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 9999984332211 3569999999999877654433222 233333210 1222334
Q ss_pred ----hHhHHHHhhcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNA-PDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++|++++.+. ++++++|+++.++|++|. ..+++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~---~~~~~~~ 279 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---MFGSDHY 279 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhhc
Confidence 58888888642 245678888777888887 66888899999999999999999999998875431 1122222
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCChhh
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+...+ +.+|||.++ .| +|+||+++ +++ +++.+... ....+.+.+.+++.++.++|+...
T Consensus 280 -~~~pd---i~t~sK~l~-gG~~~lg~v~~---~~~----i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 346 (460)
T 3gju_A 280 -GIKPD---LITIAKGLT-SAYAPLSGVIV---ADR----VWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELID- 346 (460)
T ss_dssp -TCCCS---EEEECGGGT-TTSSCCEEEEE---EHH----HHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred -CCCCC---eeeeehhhc-CCCCCeEEEEE---CHH----HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH-
Confidence 22222 336899997 56 89999974 788 77777532 223456778888888888886321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------HHHHHHHhhhccEE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------------PYQVDRLAKEFHIY 392 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~ll~~~gI~ 392 (435)
+ ++..++.++..+..++.+.+.+++++. +....+.+. |+++.+. ...+.+.+.++||.
T Consensus 347 -~--~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 419 (460)
T 3gju_A 347 -E--MDLVTNAGETGAYFRAELAKAVGGHKN---VGEVRGDGM-LAAVEFVADKDDRVFFDASQKIGPQVATALAASGVI 419 (460)
T ss_dssp -H--TTHHHHHHHHHHHHHHHHHHHHTTSTT---EEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEE
T ss_pred -h--ccHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEeeeeE-EEEEEEccCccccccccchHHHHHHHHHHHHHCCeE
Confidence 0 123444445555555555555555432 334445554 4443220 22343334568999
Q ss_pred EeCCC-----cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MTQDG-----RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~pgg-----Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.|+| ||++. ..+++++++++++|++++++..
T Consensus 420 v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 420 GRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99864 88843 3488999999999999997654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=219.91 Aligned_cols=330 Identities=11% Similarity=0.059 Sum_probs=207.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++..+|++.|.+.+.-|. .++++++++.+++... .+.| .+.....++++.+++++ + .+++. +++|
T Consensus 34 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~--~~~g 101 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKL-LHTSNLYYNENIAAAAKNLAKAS-A-------LERVF--FTNS 101 (395)
T ss_dssp TCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTC-SCCCTTSBCHHHHHHHHHHHHHH-T-------CSEEE--EESS
T ss_pred CCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhc-cccccccCCHHHHHHHHHHHHhc-C-------CCeEE--EeCC
Confidence 5678999999965333222 2344445555555432 2212 12233445666666655 2 24677 8999
Q ss_pred chhHHHHHHHHHHHh-----CCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCCCCCcChHhHHH
Q 013839 126 GTGACRLFAEFQRRF-----HPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 126 g~~a~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
|++|+..+..+.... .++|+|++.+|+|.++.......+. ++..++. .|+++|++
T Consensus 102 g~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 174 (395)
T 3nx3_A 102 GTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEK 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHH
Confidence 999999985333222 4679999999999877544433332 2222221 27899998
Q ss_pred HhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 188 DIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
+++ ++++++++.+++|++|.. .+++++++|.++|++||+++|+||+|.++...+. ....... +. ...+.
T Consensus 175 ~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~~~-~~---~~d~~ 244 (395)
T 3nx3_A 175 LVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYEHA-QI---LPDIM 244 (395)
T ss_dssp TCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TC---CCSEE
T ss_pred hcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHHhc-CC---CCCEE
Confidence 886 567888887778888876 6788899999999999999999999988865431 1111111 11 12244
Q ss_pred cccccccccCCcccEEEEEecChhHHHHH-HHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAI-RSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
|+||.++ .|+|+||+++ +++ + ++.+.......+.+.+.+++.++.++|+... + ++..++.++..+..
T Consensus 245 t~sK~~~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~--~--~~~~~~~~~~~~~~ 312 (395)
T 3nx3_A 245 TSAKALG-CGLSVGAFVI---NQK----VASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK--E--EKILENVNKLTPYL 312 (395)
T ss_dssp EECGGGT-TTSCCEEEEE---CHH----HHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHH--H--TTHHHHHHHHHHHH
T ss_pred Eeccccc-CCCceEEEEE---chh----hhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHH--h--hHHHHHHHHHHHHH
Confidence 7899998 5999999974 777 6 6666554444556788888888888775321 0 02223333333333
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHH
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAI 416 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l 416 (435)
++.+.+.+..++. +....+. |.|+|+.+ +.+.+.+.+.++||.+.++| ||+++. .+++++++++++|
T Consensus 313 ~~~l~~~~~~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l 388 (395)
T 3nx3_A 313 EQSLDELINEFDF---CKKRKGL-GFMQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKL 388 (395)
T ss_dssp HHHHHHHHHHCTT---EEEEEEE-TTEEEEEECTTSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---eEEEEeE-EEEEEEEeCCcchHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433332 2233333 44565533 34444334456899999875 887533 3889999999999
Q ss_pred HHHHHh
Q 013839 417 HEVTRS 422 (435)
Q Consensus 417 ~~~l~~ 422 (435)
++++++
T Consensus 389 ~~~l~~ 394 (395)
T 3nx3_A 389 RKALKS 394 (395)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=226.63 Aligned_cols=339 Identities=10% Similarity=0.062 Sum_probs=207.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|+..|.+...-|+ .++++++.+.+++... ....|+. ....++++.+++++ +.. +++|. +++|
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~-~~~-----~~~v~--~~~g 110 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLFSEMLS-RPVVDLATRLANIT-PPG-----LDRAL--LLST 110 (433)
T ss_dssp TCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCCTTCCC-HHHHHHHHHHHHHS-CTT-----CCEEE--EESC
T ss_pred CCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCcccccccCC-HHHHHHHHHHHHhC-CCC-----cCEEE--EeCc
Confidence 4567889988874222221 2334444444444321 1123332 23456777777664 221 46788 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C-----------CCeeeeeecCC--CCC--------CcChH
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q-----------IPERTYHYYDP--DSK--------SLDFA 183 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g-----------~~~~~v~~~~~--~~~--------~~d~e 183 (435)
|++|+.++..+......+|+|++.+|+|.++....... + ..+..++.... ..+ .+|++
T Consensus 111 g~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 190 (433)
T 1zod_A 111 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHH
Confidence 99999998432221234589999999997764432211 1 12333332110 112 24689
Q ss_pred hHHHHhhcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNA-PDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~-~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+|++++++. ++++++++++..+||||. ..+++++++|.++|++||+++|+||+|.++...+. ....... +...+
T Consensus 191 ~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~~~~-~~~~d 266 (433)
T 1zod_A 191 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTPD 266 (433)
T ss_dssp HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS
T ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHHhhc-CCCCC
Confidence 999988742 134566666544688996 56889999999999999999999999998865431 1111111 22222
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+.|+||.++. |+|+||+++ +++ +++.+...... .+.+.+.+++.++.++++... + +...
T Consensus 267 ---i~s~sK~~~~-G~~ig~~~~---~~~----~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~------~--~~~~ 327 (433)
T 1zod_A 267 ---ILTLSKTLGA-GLPLAAIVT---SAA----IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ------R--DGLV 327 (433)
T ss_dssp ---EEEECHHHHT-TSSCEEEEE---CHH----HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH------H--TTHH
T ss_pred ---EEEecccccC-CCCeeEEEE---hHH----HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--CCHH
Confidence 3489999995 999999974 778 77777653212 456678888888877775321 1 2345
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC------------HH-HHHHHhhhccEEEeCC------C-
Q 013839 340 DRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT------------PY-QVDRLAKEFHIYMTQD------G- 397 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~------------~~-~~~~ll~~~gI~i~pg------g- 397 (435)
++++++++.+.+.|+++. .+ .+....+. |.|+|+.+. .. +...++ ++||.+.|+ +
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~ 404 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFD-CIGDVRGR-GLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPGMGGV 404 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TEEEEEEE-TTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCCCCCE
Confidence 566666777777776541 11 12233444 445565331 33 345554 689999875 3
Q ss_pred -cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 398 -RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 -Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
||+++ ..+++++++++++|++++++
T Consensus 405 lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 405 FRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 88653 34899999999999998864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=217.02 Aligned_cols=315 Identities=11% Similarity=0.066 Sum_probs=206.7
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCC---cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISA---SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~---~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
+.+.|..|.. +.++.+++++.+.+..+.. ..+... .-..++++.+++++ +.. .+++++ +++||
T Consensus 4 ~~~~~~p~p~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~----~~~~v~--~~~g~ 70 (362)
T 3ffr_A 4 NKIYFTPGPS------ELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLL-ELP----SNYEVL--FLASA 70 (362)
T ss_dssp CCEEECSSSC------CCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHT-TCC----TTEEEE--EESCH
T ss_pred cceeccCCCc------CCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHh-CCC----CCcEEE--EeCCc
Confidence 3456665542 3445555555555543321 111111 12345666666665 321 135677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChh-hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSN-HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
++|+.++ +.+++.+ +.+++..|.|.. +...++..|++++.++. ++++.+|+++++ +. ++++++++++|+
T Consensus 71 t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~---~~~~~v~~~~~~ 140 (362)
T 3ffr_A 71 TEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP---ADAEIICLTHNE 140 (362)
T ss_dssp HHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC---TTCCEEEEESEE
T ss_pred hHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc---CCccEEEEEcCC
Confidence 9999988 7777777 556666666652 34466788999999987 445789999998 44 678999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc-ccCCcccEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVK-GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLS 283 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~-~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~ 283 (435)
||||.+++ +++|.++|++| |+++|+|++|...... . +....++++.|+||.++ ++| +|+++
T Consensus 141 nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~-~-----------~~~~~d~~~~s~~K~~~~~~G--~g~~~ 203 (362)
T 3ffr_A 141 TSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK-F-----------DWTKIDSVFFSVQKCFGLPAG--LGVWI 203 (362)
T ss_dssp TTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC-C-----------CTTSCSEEEEETTSTTCCCSC--CEEEE
T ss_pred CCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc-c-----------ChhHCcEEEEecccccCCCCc--eEEEE
Confidence 99999998 55899999999 9999999997654422 1 11124588999999998 777 46665
Q ss_pred EEecChhHHHHHHHHHHHHhh---------------------ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 284 ILCVDSKQAAAIRSQIQQIAR---------------------AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+ +++ +++.+..... ....+++...+.++..++.... ...+++.++++
T Consensus 204 ~---~~~----~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~ 271 (362)
T 3ffr_A 204 L---NDR----VIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-----QISADGIRKQT 271 (362)
T ss_dssp E---EHH----HHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHH
T ss_pred E---CHH----HHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH-----HccHHHHHHHH
Confidence 3 777 5555554332 1134566666666666664211 12367788889
Q ss_pred HHHHHHHHHHHHhhCCCCCccccc----cCcceeEecCC--CHHHHHHHhhhccEEEeCC------C--cEEecc-CCCC
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHIT----NQLGMFCFSGL--TPYQVDRLAKEFHIYMTQD------G--RISMAG-VTTG 407 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~----~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pg------g--Ris~~~-~~~e 407 (435)
+++++.+.+.|++++. +.... ...+.++|+.+ +.+.+.+.|.++||.+.+| + |++++. .+++
T Consensus 272 ~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e 348 (362)
T 3ffr_A 272 EEKAALINTYIESSKV---FSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLE 348 (362)
T ss_dssp HHHHHHHHHHHHHCSS---EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHH
T ss_pred HHHHHHHHHHHHHccC---ceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHH
Confidence 9999999999998731 34433 12344455433 4555544445569999976 2 999854 3778
Q ss_pred cHHHHHHHHHHHH
Q 013839 408 NVNYLANAIHEVT 420 (435)
Q Consensus 408 ~i~~~~~~l~~~l 420 (435)
++++++++|++++
T Consensus 349 ~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 349 QVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999888753
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=224.63 Aligned_cols=345 Identities=12% Similarity=0.027 Sum_probs=203.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..||+..|.+...-|+ .++.+++++.+++... ..|....+..+.++++++++....... ..+++. +++||+
T Consensus 62 ~G~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~--~~~sGs 135 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGA-SHPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTA--LFNSGA 135 (453)
T ss_dssp TSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEE--EESSHH
T ss_pred CCCEEEEcCCCcccCcCCC-CCHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEE--EeCcHH
Confidence 5678899998864232232 2444555555555422 123333333444444444442111100 034777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC--------------CeeeeeecCC--CCCCcC--------hH
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI--------------PERTYHYYDP--DSKSLD--------FA 183 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--~~~~~d--------~e 183 (435)
+|+.++..+......+++|++.+|+|.++.......+. .+..++.... +.++.+ ++
T Consensus 136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (453)
T 4ffc_A 136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS 215 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence 99999853332223558999999999877654433322 2333443110 112333 34
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTG--VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
.|++.+. +...+++++.|.||+| ...+++.+++|.++|++||+++|+||+|.+|...+. ......+ +.
T Consensus 216 ~l~~~i~---~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~~~~-~~--- 285 (453)
T 4ffc_A 216 RIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFASEHE-GI--- 285 (453)
T ss_dssp HHHHHTC---GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TC---
T ss_pred HHHHhcC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchhhhc-CC---
Confidence 4555443 3445555667777776 445788899999999999999999999998865431 1111111 21
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
...+.+|||.++. |+|+||+++ +++ +++.+.......+.+.+.++|.++.++|+... + .+..++.++.
T Consensus 286 ~pdi~t~sK~~~~-G~~~G~~~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~~~~~~~ 353 (453)
T 4ffc_A 286 VPDIVTMAKGIAG-GMPLSAVTG---RAE----LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMR--E--LDLPARARAI 353 (453)
T ss_dssp CCSEEEECGGGGT-TSSCEEEEE---EHH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH--H--TTHHHHHHHH
T ss_pred CcchHhhhhhhcC-CcCeEEEEE---CHH----HHhhhcccCcCCCCCcCHHHHHHHHHHHHHhh--h--hhHHHHHHHH
Confidence 1124478999995 999999964 777 77777655555677888999988888875321 0 0222233333
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--------C---HHHHHHHhhhccEEEeCCC------cEEecc-
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--------T---PYQVDRLAKEFHIYMTQDG------RISMAG- 403 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--------~---~~~~~~ll~~~gI~i~pgg------Ris~~~- 403 (435)
.+..++.+.+.+..++. +....+. |.|+|+.+ + ...+.+.+.++||.+.|+| ||+++.
T Consensus 354 ~~~l~~~l~~~~~~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~ 429 (453)
T 4ffc_A 354 EASVTSRLSALAEEVDI---IGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLV 429 (453)
T ss_dssp HHHHHHHHHHHHHHCSS---EEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTT
T ss_pred HHHHHHHHHHHHhhCCC---eEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCC
Confidence 33333333333344432 2333333 44555533 1 2234333456899999864 776543
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+++++++++++|++++++..
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 430 IGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999997654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=226.48 Aligned_cols=322 Identities=11% Similarity=0.065 Sum_probs=215.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC-----CC--
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH-----PE-- 143 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~-----~g-- 143 (435)
+.+.++..........+|....|..++++.+++++....+.+..++++. +++||++|+.++ +.++.. +|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~--~~~ggt~a~~~a--~~a~~~~~~~~~g~~ 157 (497)
T 3mc6_A 82 HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGT--TTSGGTESLLLA--CLSAKMYALHHRGIT 157 (497)
T ss_dssp HHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEE--EESSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEE--EcCcHHHHHHHH--HHHHHHHHHhcCCCC
Confidence 3333444433322245566667777888887777632222111245777 899999999888 444432 45
Q ss_pred -CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 144 -SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 144 -d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
|+|+++.|+|..+...++..|++++.+++ +++++.+|+++|++++. +++++|++++|+||||.+.+ +++|.+
T Consensus 158 ~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~---l~~i~~ 230 (497)
T 3mc6_A 158 EPEIIAPVTAHAGFDKAAYYFGMKLRHVEL-DPTTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIADD---IEGLGK 230 (497)
T ss_dssp SCEEEEETTSCHHHHHHHHHSCCEEEEECB-CTTTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCCS---CTTTTT
T ss_pred CceEEEeCCccHHHHHHHHHcCCeEEEEec-CcccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCCC---HHHHHH
Confidence 89999999999999999999999999998 34468899999999997 67899999999999999976 558999
Q ss_pred HHHhcCceeeeeccCCCccCC-----CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH
Q 013839 223 QFKVKGHFPFFDMAYQGFASG-----DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS 297 (435)
Q Consensus 223 ~~~~~~~~vi~Deay~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~ 297 (435)
+|++||+++|+|++|.++... +.. ..+++. ....+.++++.|++|.++ .|.++||++ + +.+ ...
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~-~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~--~-~~~----~~~ 299 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYK-NLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVIM--Y-RNS----DLR 299 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCC-SCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEEE--C-SSH----HHH
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhccc-CCcccc--ccCCCCcEEEECchhhcC-CCCCceeEE--e-cCH----HHH
Confidence 999999999999998754311 000 000000 112234678889999864 678899996 4 443 322
Q ss_pred HHHHHhhccccC-----CC---------hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCc
Q 013839 298 QIQQIARAMYGS-----PP---------VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNW 362 (435)
Q Consensus 298 ~l~~~~~~~~~~-----~~---------~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~ 362 (435)
.........+.+ .+ ..++.++...+.. +..++..++..++++++.+.|++. +. +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~--------~~~~~~~~~~~~~~~~l~~~L~~~~~g---~ 368 (497)
T 3mc6_A 300 MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE--------NGYIESCQEIVGAAMKFKKYIQENIPD---L 368 (497)
T ss_dssp TTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHSCTT---C
T ss_pred hhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhcCCC---E
Confidence 221111111111 11 2234444444432 345677788888899999999884 32 3
Q ss_pred ccc-ccCcceeEec--CCCHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 363 EHI-TNQLGMFCFS--GLTPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 363 ~~~-~~~~g~~~~~--~~~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+. ++.++++.|. +.+...+.+.|.++||.+.+++ |++++..+.+++++++++|++++++...
T Consensus 369 ~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 369 DIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp EECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred EEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 444 4566666664 3455556555567899987653 8998766899999999999999987653
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=219.67 Aligned_cols=305 Identities=11% Similarity=0.002 Sum_probs=196.9
Q ss_pred cccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC-
Q 013839 67 PVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES- 144 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd- 144 (435)
|.+.+.++++..... ......|++..+..+|++.+++++. .. ..+ ++.+|++|+.++ +..++.+||
T Consensus 21 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~-~~------~~i---~~~~G~~a~~~a--l~~~~~~gd~ 88 (357)
T 3lws_A 21 KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG-MD------DAV---FFPSGTMAQQVA--LRIWSDETDN 88 (357)
T ss_dssp CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT-CS------EEE---EESCHHHHHHHH--HHHHHHHHTC
T ss_pred CCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC-CC------cEE---EecCcHHHHHHH--HHHHhhcCCC
Confidence 445555555554432 1123458777788999999999983 31 223 468888888777 666677888
Q ss_pred -EEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC-CCCCCHHHHHH
Q 013839 145 -HIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT-GVDPTEEQWRE 219 (435)
Q Consensus 145 -~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt-G~~~~~~~l~~ 219 (435)
.|+++.++|..... .....|++++.++. +++.+|+++|+++. . ++++++++||||| |.+++.+++++
T Consensus 89 ~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~~----~-~~~v~~~~p~np~~G~~~~~~~l~~ 160 (357)
T 3lws_A 89 RTVAYHPLCHLEIHEQDGLKELHPIETILVGA---ADRLMTLDEIKALP----D-IACLLLELPQREIGGVAPAFSELET 160 (357)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHSSCEEEECSC---TTSCCCHHHHHTCC----S-CSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred cEEEecccceeeeeccchhhhccCcEEEEecC---CCCCcCHHHHhcCc----C-cceEEEEcccccCCceeCCHHHHHH
Confidence 67777666543322 34566888888763 34579999998762 2 7889999999998 99999999999
Q ss_pred HHHHHHhcCceeeeeccCCCc--cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH
Q 013839 220 ISYQFKVKGHFPFFDMAYQGF--ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS 297 (435)
Q Consensus 220 i~~~~~~~~~~vi~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~ 297 (435)
|+++|++||+++|+|++|... .+.+ ..... +....+ +++.|+||.++.++. ||+++ +++ +++
T Consensus 161 i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~---~~~~~d--~~~~s~sK~~~~~~g--g~~~~---~~~----~~~ 224 (357)
T 3lws_A 161 ISRYCRERGIRLHLDGARLFEMLPYYE--KTAAE---IAGLFD--SIYISFYKGLGGIAG--AILAG---PAA----FCQ 224 (357)
T ss_dssp HHHHHHHTTCEEEEEETTHHHHHHHHT--CCHHH---HHTTSS--EEEEESSSTTCCSSC--EEEEE---CHH----HHH
T ss_pred HHHHHHHcCCEEEEECchhhhhhhhcC--CChHH---HHhcCC--EEEEeccccCCCCce--EEEEc---CHH----HHH
Confidence 999999999999999997521 1111 11112 222222 347899999943332 88864 888 777
Q ss_pred HHHHHhhccccCC--ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc-cccCcceeEe
Q 013839 298 QIQQIARAMYGSP--PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH-ITNQLGMFCF 374 (435)
Q Consensus 298 ~l~~~~~~~~~~~--~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~ 374 (435)
.+.+.......+. ....+.++...|. ++.+. .+++.++++.+.+.|++++. +.+ ..+.+++|+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~-~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~ 291 (357)
T 3lws_A 225 TARIWKRRYGGDLISLYPYIVSADYYYE---------LRKDR-MGQYYEQAKQLAEQFNALPG---VHTTPEVPVSNMFH 291 (357)
T ss_dssp HHHHHHHHTTCCCSCCHHHHHHHHHHHH---------HHTTC-HHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEE
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHhCCC---CeeccCCCcceEEE
Confidence 7766543322222 2232333323332 22222 33456778888999988732 455 3456677888
Q ss_pred cCC--C----HHHHHHHhhhccEEEeCCC---------cEEecc----CCCCcHHHHHHHHHHHH
Q 013839 375 SGL--T----PYQVDRLAKEFHIYMTQDG---------RISMAG----VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 375 ~~~--~----~~~~~~ll~~~gI~i~pgg---------Ris~~~----~~~e~i~~~~~~l~~~l 420 (435)
+.+ . .+.+.+.++++||.+.||. |++++. .+.+++++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 292 LHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 855 2 3455555677999999872 777642 25667777888777653
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=223.40 Aligned_cols=231 Identities=13% Similarity=0.044 Sum_probs=160.5
Q ss_pred CCeeeeecc-eecCCCCCcccchHHHHHHHH---hcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 50 PYKINLGVG-AYRDDKGRPVVLQCVREAEAK---IAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 50 ~~~i~l~~g-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++|.|+.| +| +. +.++++.+.+... ........|. ..|.+ +++++++++....+. ++++ ++.+
T Consensus 89 ~~~i~l~~g~~~-~~---~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i--~~~s 156 (464)
T 1ibj_A 89 TLLVNLDNKFDP-FD---AMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAF--CFTS 156 (464)
T ss_dssp HHHTCCCCSSCT-TC---CSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEE--EESS
T ss_pred CeEEECCCCCCC-CC---CCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEE--EECC
Confidence 467888887 53 33 3333332222211 1122245576 35655 566666665222111 2444 6888
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
|++|+.++ + .++.+||+|++++|+|..+... ++..|++++.++. .|++++++++. ++++++++
T Consensus 157 Gt~al~~~--l-~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~---~~tk~v~l 223 (464)
T 1ibj_A 157 GMAALSAV--T-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIG---PQTKLVWL 223 (464)
T ss_dssp HHHHHHHH--H-TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCC---SSEEEEEE
T ss_pred HHHHHHHH--H-HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhc---cCceEEEE
Confidence 88888766 4 4678999999999999988764 4567888888875 17899999997 67899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc-cCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL-YGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G~RvG 280 (435)
++|+||||.+++ +++|.++|++||+++|+|++|....... ++ + .+.++++.|+||.++. .|+|+|
T Consensus 224 ~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~~------~~----~-~~~div~~S~sK~~~g~~Gl~~G 289 (464)
T 1ibj_A 224 ESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR------PL----E-LGADIVMHSATKFIAGHSDVMAG 289 (464)
T ss_dssp CSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC------GG----G-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred eCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccCC------hh----h-cCCEEEEECCcccccCCCCCcEE
Confidence 999999999985 6799999999999999999986432110 11 1 2578999999998864 489999
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
|+++ ++++ +++.+.........+.+.+.|.++...+.+.
T Consensus 290 ~l~~--~~~~----l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~ 328 (464)
T 1ibj_A 290 VLAV--KGEK----LAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_dssp EEEE--CSHH----HHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred EEEE--ChHH----HHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence 9974 2357 7777776554444567788888887787653
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=221.72 Aligned_cols=340 Identities=11% Similarity=0.040 Sum_probs=210.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CC-CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FL-ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+|++.|.+...-++. ++++++++.+++.... .. .|.. ....++++.+++++ +. .++++. +++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~-~~-----~~~~v~--~~~ 117 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLDYSPGFQYGH-PLSFQLAEKITDLT-PG-----NLNHVF--FTD 117 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCSCCCSSSCCC-HHHHHHHHHHHTTS-ST-----TEEEEE--EES
T ss_pred CCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCCCccccccCC-HHHHHHHHHHHHhC-CC-----CCCEEE--EcC
Confidence 45678899877642222222 4445555555554321 11 2221 12234444554443 21 245777 999
Q ss_pred CchhHHHHHHHHHHH-h-----CCCCEEEEcCCCChhhH-HHHhhCCC------------CeeeeeecC--CCC-CCcC-
Q 013839 125 SGTGACRLFAEFQRR-F-----HPESHIYFPDPTWSNHH-NIWRDAQI------------PERTYHYYD--PDS-KSLD- 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~-~-----~~gd~Vlv~~p~y~~~~-~~~~~~g~------------~~~~v~~~~--~~~-~~~d- 181 (435)
||++|+.++...+.. . .+||+|++.+|+|.++. ..+...|. .+..++... ..+ .++|
T Consensus 118 ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~ 197 (449)
T 3a8u_X 118 SGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMP 197 (449)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCCh
Confidence 999999988432211 1 16799999999998764 34444331 233333210 011 1356
Q ss_pred -------hHhHHHHhhcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 182 -------FAALMDDIKNAP-DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 182 -------~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+++|++++++.. +++++++++..+||||. ..+++.+++|.++|++||+++|+||+|.+|+..+. ...+
T Consensus 198 ~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~ 274 (449)
T 3a8u_X 198 KEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS---MFGA 274 (449)
T ss_dssp SSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc---chhh
Confidence 899999987432 34566666555678997 55799999999999999999999999987765431 1122
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh---------hccccCCChhHHHHHHHHh
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA---------RAMYGSPPVHGILLVATIL 322 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~q~~~~~~l 322 (435)
..+ +...+++ |+||.++ .| +|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|
T Consensus 275 ~~~-~~~~di~---s~sK~l~-~G~~~~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal 342 (449)
T 3a8u_X 275 DSF-GVTPDLM---CIAKQVT-NGAIPMGAVIA---STE----IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAAL 342 (449)
T ss_dssp HHH-TCCCSEE---EECGGGG-TTSSCCEEEEE---EHH----HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHH
T ss_pred hhc-CCCCCEE---EEccccc-CCCCceEEEEE---CHH----HHHHhhccCcccccccccccCCCcccHHHHHHHHHHH
Confidence 222 2222222 8899998 58 99999864 677 777776531 1234566788887777777
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCccccccCcceeEecCCC-----H-----HHHHHHhhhccE
Q 013839 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCFSGLT-----P-----YQVDRLAKEFHI 391 (435)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~~-----~-----~~~~~ll~~~gI 391 (435)
+... + +...++++++++.+.+.|++++ .+ .+.... ..|.|+|+.+. . ++...++ ++||
T Consensus 343 ~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv 411 (449)
T 3a8u_X 343 CLLQ------K--ENLVQSVAEVAPHFEKALHGIKGAK-NVIDIR-NFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGF 411 (449)
T ss_dssp HHHH------H--TTHHHHHHHHHHHHHHHHHTTTTST-TEEEEE-EETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTE
T ss_pred HHHH------h--cCHHHHHHHHHHHHHHHHHHHhcCC-CeEEEe-eeEEEEEEEEecCcccccccHHHHHHHHH-HCCc
Confidence 5321 1 2456777788888888887753 21 111222 34567776441 1 3445554 5799
Q ss_pred EEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 392 YMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 392 ~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+.++| ||++. ..+++++++++++|+++++++
T Consensus 412 ~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 412 YVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 999975 88853 348999999999999988654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=223.65 Aligned_cols=343 Identities=8% Similarity=-0.018 Sum_probs=215.7
Q ss_pred CCC--CeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSP--YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~--~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
+++ ..||+..|...+.-|. .++.+++++.+++... ....+.+.....+|++.+++++ +.. .+++. ++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~-~~~-----~~~v~--~~ 141 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDIT-PAG-----LDTVF--FS 141 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHS-STT-----EEEEE--EE
T ss_pred CCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC-CCC-----cCEEE--Ee
Confidence 456 7899988853222232 2334444444444321 1111223344567777777775 221 34777 99
Q ss_pred CCchhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHHhhCC--------------CCeeeeeecCCCCCCcChH
Q 013839 124 LSGTGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIWRDAQ--------------IPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~d~e 183 (435)
+||++|++++..+.... .+| ++|++.+++|.++.......+ .....++.........|++
T Consensus 142 ~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~ 221 (457)
T 3tfu_A 142 DSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSA 221 (457)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHH
Confidence 99999999985333221 145 589999999977654433331 1233333311111224889
Q ss_pred hHHHHhhcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNAPDSSFFLLHPS-AHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+|++++++.++++++|++++ ++||+|..+ +++.+++|.++|++||+++|+||+|.+|+..+. ......+ +...+
T Consensus 222 ~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~~~~-~~~pd 297 (457)
T 3tfu_A 222 AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAADHA-GVSPD 297 (457)
T ss_dssp HHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHhHhc-CCCce
Confidence 99998875445678888888 899999877 778899999999999999999999998876532 1122222 22223
Q ss_pred EEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-----hhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-----ARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
++ ||||.++ .| +|+||+++ +++ +++.+... ....+.+.+.+++.++.++|+... +
T Consensus 298 ii---t~sK~l~-gG~~~lG~v~~---~~~----i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~------~-- 358 (457)
T 3tfu_A 298 IM---CVGKALT-GGYLSLAATLC---TAD----VAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL------G-- 358 (457)
T ss_dssp EE---EECGGGG-TTSSCCEEEEE---EHH----HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH------T--
T ss_pred EE---EEChhhh-CCCcceEEEEE---cHH----HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh------h--
Confidence 33 8999887 45 79999974 777 77777521 223456778888888877775211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCCC---cEEec-cCCC
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQDG---RISMA-GVTT 406 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pgg---Ris~~-~~~~ 406 (435)
+...++++++.+++.+.|+++.....+....+. |.|.++.+ +...+ ..+ .++||.+.|.| ||++. ..++
T Consensus 359 ~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~~~~~~~~~l-~~~Gv~v~~~~~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 359 QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPVDLAVATPAA-LDRGVWLRPFRNLVYAMPPYICTP 436 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCCCHHHHHHHH-HHTTEECCCBTTEEEECCCTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCcccHHHHHHHH-HHCCeEEEecCCEEEEECCCCCCH
Confidence 244566667777777777765311112333344 44555533 34444 555 45799999987 88753 2388
Q ss_pred CcHHHHHHHHHHHHHhhh
Q 013839 407 GNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++++|++++++..
T Consensus 437 eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 437 AEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-27 Score=228.86 Aligned_cols=286 Identities=15% Similarity=0.038 Sum_probs=181.4
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCC-EEEEcCCCChhhHHHHh---hCC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPES-HIYFPDPTWSNHHNIWR---DAQ 164 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd-~Vlv~~p~y~~~~~~~~---~~g 164 (435)
...++++.+++++ +.. +++++ +++||++|+.++ +.+++ .+|| +|+++.++|+.+...+. ..|
T Consensus 64 ~~~~l~~~la~~~-~~~-----~~~v~--~~~g~t~al~~~--~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g 133 (400)
T 3vax_A 64 GVERAREYLASTV-SAE-----PDELI--FTSGATESNNIA--LLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRG 133 (400)
T ss_dssp HHHHHHHHHHHHT-TCC-----GGGEE--EESCHHHHHHHH--HHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHc-CCC-----CCcEE--EeCCHHHHHHHH--HHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcC
Confidence 3567888888876 332 45787 899999999988 55555 7999 99999999988766554 369
Q ss_pred CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 165 IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 165 ~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
++++.++. ++++.+|+++|++++. ++++++++++|+||||..++ +++|.++|++||+++|+|++|......
T Consensus 134 ~~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~- 204 (400)
T 3vax_A 134 FEVDFLTP--GPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKVP- 204 (400)
T ss_dssp CEEEEECC--CTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTSG-
T ss_pred CeEEEEcc--CCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCCC-
Confidence 99999987 3467899999999987 67899999999999999987 468999999999999999998632211
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE-EEecChhHH---HHHHHHHH---HHhhccccCCChhHHHH
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS-ILCVDSKQA---AAIRSQIQ---QIARAMYGSPPVHGILL 317 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~-~~~~~~~~~---~~~~~~l~---~~~~~~~~~~~~~~q~~ 317 (435)
.. + ... .++++.|+||.+|.+| +|+++ + .+++.. ..+...+. ........+++...+.+
T Consensus 205 -----~~---~-~~~-~d~~~~s~~K~~g~~g--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (400)
T 3vax_A 205 -----GD---L-TTP-IDMISISGHKIGAPKG--VGALVTR--RREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMG 270 (400)
T ss_dssp -----GG---G-GSC-CSEEEEETGGGTSCSS--CEEEEEC--BCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHH
T ss_pred -----cC---h-hhc-CcEEEEeHHHhCCCCc--eEEEEEe--cchhccccccccCceecCCCceeeeecCCCCHHHHHH
Confidence 01 1 111 5688999999887666 56664 3 231100 00111110 00012233456666666
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEec---CCCHHHHHHHhhhccE
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCFS---GLTPYQVDRLAKEFHI 391 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~~---~~~~~~~~~ll~~~gI 391 (435)
+..++... .+.+++.+++++++++++.+.|+ .+ ++.+..+++ +.++++ +.+.+.+.+.|. +||
T Consensus 271 ~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi 339 (400)
T 3vax_A 271 LAEAAKIF------EAEHAQWQVAAQDLRSRLLAGLA-ST---SFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLV 339 (400)
T ss_dssp HHHHHHHH------HHSHHHHHHHHHHHHHHHHHHHT-TT---TCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHH
T ss_pred HHHHHHHH------HhhHHHHHHHHHHHHHHHHHhhC-CC---CEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCc
Confidence 65665422 24567888999999999999998 43 244544443 223322 446666655556 899
Q ss_pred EEeCC-------------------------C--cEEe-cc-CCCCcHHHHHHHHHHHHHh
Q 013839 392 YMTQD-------------------------G--RISM-AG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 392 ~i~pg-------------------------g--Ris~-~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+| + ||++ +. .+++++++++++|++++++
T Consensus 340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 340 AVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred EEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 88774 4 9998 53 3789999999999988753
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-25 Score=221.16 Aligned_cols=332 Identities=14% Similarity=0.054 Sum_probs=215.0
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCC----
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE---- 143 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g---- 143 (435)
.+.+.+.++...........|....+..++++++++++....+.+..++++.+++++||++|+.++ +.++..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~a--l~a~~~~g~~~~ 188 (514)
T 3mad_A 111 HHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLA--MKTYRDWARATK 188 (514)
T ss_dssp HHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHH--HHHHHHHhhhhc
Confidence 334455555554443324445555666777777766653222222223677334899999999988 55555555
Q ss_pred ----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 013839 144 ----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWRE 219 (435)
Q Consensus 144 ----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~ 219 (435)
|+|+++.|+|..+...++..|++++.+++. +++.+|+++|+++++ +++++|++++|+||||.+.+ +++
T Consensus 189 g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~---l~~ 260 (514)
T 3mad_A 189 GITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDP---IPE 260 (514)
T ss_dssp CCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCC---HHH
T ss_pred CCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccC---HHH
Confidence 999999999999999999999999999983 368899999999997 67899999999999999977 569
Q ss_pred HHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH
Q 013839 220 ISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ 298 (435)
Q Consensus 220 i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~ 298 (435)
|.++|++||+++|+|++|.++..........+...+ ....+.++++.|++|.++ .|.++||+++ .++. + ..
T Consensus 261 i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~--~~~~----~-~~ 332 (514)
T 3mad_A 261 IAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY-GAKGTSVILY--RRPD----L-LH 332 (514)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTC-CCSSCEEEEE--SSHH----H-HT
T ss_pred HHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccC-CCCCeEEEEE--eCHH----H-hc
Confidence 999999999999999999876531000000000000 012245788899999965 6788999964 3433 2 21
Q ss_pred HHHHhhc----------c-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 299 IQQIARA----------M-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 299 l~~~~~~----------~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
....... . ..+.+.....++..++..-+ ....++..++..++++++.+.|++++. +.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~ 404 (514)
T 3mad_A 333 YQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPS---LKILGD 404 (514)
T ss_dssp TTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTT---CEESSC
T ss_pred cccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCC---eEEeCC
Confidence 1110000 0 11222222222222222111 144577788888899999999988632 455555
Q ss_pred CcceeEec--CCCHHHHHHHhhhccEEEeCCC-----cEEecc--CCCCcHHHHHHHHHHHHHhhhh
Q 013839 368 QLGMFCFS--GLTPYQVDRLAKEFHIYMTQDG-----RISMAG--VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 368 ~~g~~~~~--~~~~~~~~~ll~~~gI~i~pgg-----Ris~~~--~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
..+++.+. +.+...+.+.|.++||.+...+ |++++. .+++++++++++|++++++...
T Consensus 405 ~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 405 PLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp CSSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55543332 3455555444456799883221 888763 2568999999999999987654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=220.73 Aligned_cols=329 Identities=10% Similarity=0.068 Sum_probs=207.8
Q ss_pred CCCCeeeeecceecCCCCCc-ccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRP-VVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+||..|... .... .++.+++.+.+++..... ..| +.....++++.+++++ + .+++. +++
T Consensus 63 ~G~~ylD~~~g~~~--~~lgh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~ 129 (433)
T 1z7d_A 63 NDKRYYDFLSAYSS--VNQGHCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLL-G-------YDKVL--MMN 129 (433)
T ss_dssp TCCEEEESSHHHHT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHH-T-------CSEEE--EES
T ss_pred CCCEEEEcccchhh--cccCCCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhc-C-------CCeEE--EeC
Confidence 45678899888631 1122 334444444555543211 123 2234567778887776 3 24677 899
Q ss_pred CchhHHHHHHHHHHH-------hCCC-CEEEEcCCCChhhHH-HHhhCC------------CCeeeeeecCCCCCCcChH
Q 013839 125 SGTGACRLFAEFQRR-------FHPE-SHIYFPDPTWSNHHN-IWRDAQ------------IPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 125 gg~~a~~~~~~~~~~-------~~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~e 183 (435)
||++|+.++..+... +.+| |+|++++|+|.++.. .+...| ..+..+|. .|++
T Consensus 130 sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~ 202 (433)
T 1z7d_A 130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLE 202 (433)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence 999999998533221 1478 999999999987643 233323 23333332 2899
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+|+++++. +++++|+++..+|+||.. ++.+++++|.++|++||+++|+||+|.++...+. ......+ +...++
T Consensus 203 ~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~~-~~~~di 276 (433)
T 1z7d_A 203 ALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHY-NVKPDV 276 (433)
T ss_dssp HHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSE
T ss_pred HHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHhc-CCCCCE
Confidence 99999941 567788777667889985 6888999999999999999999999987765431 1111111 222222
Q ss_pred EEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 263 i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
.|+||.++ +| +|+||+++ +++ +++.+.......+.+.+.+++.++.++|+... + ....++
T Consensus 277 ---~t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 337 (433)
T 1z7d_A 277 ---ILLGKALS-GGHYPISAVLA---NDD----IMLVIKPGEHGSTYGGNPLAASICVEALNVLI------N--EKLCEN 337 (433)
T ss_dssp ---EEECGGGG-TTSSCCEEEEE---CHH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred ---EEECcccc-CCCCCeEEEEE---CHH----HHhhhccccccccCCCCHHHHHHHHHHHHHHH------h--ccHHHH
Confidence 28999999 89 99999974 777 76666543334456777888887777775321 1 245667
Q ss_pred HHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCCC----cEEecc-CCCCc
Q 013839 342 IQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQDG----RISMAG-VTTGN 408 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pgg----Ris~~~-~~~e~ 408 (435)
++++++++.+.|+++ +.+. +....+ .|.++|+.+ +...+ ..+ .++||.+.|++ |++++. .++++
T Consensus 338 ~~~~~~~l~~~L~~l~~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~iRi~~~~~~t~e~ 414 (433)
T 1z7d_A 338 AEKLGGPFLENLKRELKDSKI-VRDVRG-KGLLCAIEFKNELVNVLDICLKL-KENGLITRDVHDKTIRLTPPLCITKEQ 414 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT-EEEEEE-ETTEEEEEECTTTCCHHHHHHHH-HHTTEECCEETTTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-eEEEEe-eeeEEEEEEccChhHHHHHHHHH-HHCCeEEecCCCCEEEEECCcCCCHHH
Confidence 777888888888776 4321 122233 345666533 23444 555 46899999863 887642 48999
Q ss_pred HHHHHHHHHHHHHhhh
Q 013839 409 VNYLANAIHEVTRSEQ 424 (435)
Q Consensus 409 i~~~~~~l~~~l~~~~ 424 (435)
+++++++|++++++..
T Consensus 415 i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 415 LDECTEIIVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987653
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-25 Score=218.65 Aligned_cols=349 Identities=11% Similarity=0.031 Sum_probs=222.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..||+..|.....-|. .++.+++++.+++... .+.+ ...+..+.++++++++..... ...+++. +++||+
T Consensus 52 ~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~~~-~~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~sGs 124 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAMVL-PYAS-PWYMATSPAARLAEKIATLTP--GDLNRIF--FTTGGS 124 (476)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHC-CCCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEE--EESSHH
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc-cCcc-cCccCCHHHHHHHHHHHhcCC--CCcCEEE--EeCchH
Confidence 5678999998854232232 2444555555555421 2212 114556777888888754432 1245777 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCCCee-------------eeeecC-CCCCCcC------
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQIPER-------------TYHYYD-PDSKSLD------ 181 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~v~~~~-~~~~~~d------ 181 (435)
+|+..+..+.... ..+++|++.+|+|.++.......+.... .++... ..++..|
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 9999985433222 3458999999999888655444333221 222100 0001122
Q ss_pred --hHhHHHHhhcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 182 --FAALMDDIKNA-PDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 182 --~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
+++|++.+.+. ++++++|++++++|++|. ..+++.+++|.++|++||+++|+||+|.+|+..+. .+......+
T Consensus 205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~---~~~~~~~~~ 281 (476)
T 3i5t_A 205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE---WFASEKVFG 281 (476)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC---ceeeecccC
Confidence 77888888642 245788888888899996 77899999999999999999999999998876541 123321112
Q ss_pred cCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCChhhHH
Q 013839 258 DEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
...+++ ++||.++ .| +|+|++++ +++ +++.+... ....+.+.+++++.++.++|+...
T Consensus 282 v~pdi~---t~sK~l~-~G~~plg~v~~---~~~----i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~--- 347 (476)
T 3i5t_A 282 VVPDII---TFAKGVT-SGYVPLGGLAI---SEA----VLARISGENAKGSWFTNGYTYSNQPVACAAALANIELME--- 347 (476)
T ss_dssp CCCSEE---EECGGGG-TTSSCCEEEEE---CHH----HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHH---
T ss_pred CCcchh---hhhhhhc-CCCcCeEEEEE---CHH----HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHH---
Confidence 222232 6899998 58 99999974 888 88777653 223456778888888888875321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--C-------------HHHH-HHHhhhccEEE
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--T-------------PYQV-DRLAKEFHIYM 393 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~-------------~~~~-~~ll~~~gI~i 393 (435)
+ +...++++++.+++++.|+.+.....+...++.+. |+++.+ + ...+ ..+ .++||.+
T Consensus 348 ---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v 420 (476)
T 3i5t_A 348 ---R--EGIVDQAREMADYFAAALASLRDLPGVAETRSVGL-VGCVQCLLDPTRADGTAEDKAFTLKIDERC-FELGLIV 420 (476)
T ss_dssp ---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT-EEEEEECCC-----CCHHHHHHHHHHHHHH-HHTTEEC
T ss_pred ---h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eeEEEEecCccccccccchhHHHHHHHHHH-HHCCCEE
Confidence 1 34566777777788888876531112334445555 433322 1 2233 445 4679999
Q ss_pred eCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhhhh
Q 013839 394 TQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQETA 427 (435)
Q Consensus 394 ~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~~~ 427 (435)
.|.| ||+.. ..+++++++++++|++++++...+.
T Consensus 421 ~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 421 RPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAH 458 (476)
T ss_dssp EEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9876 88732 3489999999999999998766443
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=217.40 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=214.3
Q ss_pred CCCCeeeeecceecCCCCCc-ccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRP-VVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+||..|... .... .++.+++++.+++..... ..| +.....++++.+++++ + .+++. +++
T Consensus 74 ~g~~ylD~~sg~~~--~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~ 140 (439)
T 2oat_A 74 EGRKYFDFLSSYSA--VNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLF-N-------YHKVL--PMN 140 (439)
T ss_dssp TCCEEEESSGGGGT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHH-T-------CSEEE--EES
T ss_pred CCCEEEEccCCccc--ccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhc-C-------CCEEE--EeC
Confidence 45678899888631 1112 334444544555543211 123 2234578888888887 3 24677 899
Q ss_pred CchhHHHHHHHHHHHh-------CCC-CEEEEcCCCChhhH-HHHhhCC------------CCeeeeeecCCCCCCcChH
Q 013839 125 SGTGACRLFAEFQRRF-------HPE-SHIYFPDPTWSNHH-NIWRDAQ------------IPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~-------~~g-d~Vlv~~p~y~~~~-~~~~~~g------------~~~~~v~~~~~~~~~~d~e 183 (435)
||++|+.++..+...+ .+| |+|++.+|+|.+.. ..+...| .+++.+|. .|++
T Consensus 141 sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~ 213 (439)
T 2oat_A 141 TGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLP 213 (439)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHH
Confidence 9999999885332211 467 89999999997764 3444434 23444432 2899
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+|+++++. +++++++++..+|+||. .++.+++++|.++|++||+++|+||+|.++...+. ...... .+...++
T Consensus 214 ~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~-~~~~~Di 287 (439)
T 2oat_A 214 ALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDY-ENVRPDI 287 (439)
T ss_dssp HHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSE
T ss_pred HHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHH-hCCCCcE
Confidence 99999852 46777777666778997 56899999999999999999999999987765431 111111 1221222
Q ss_pred EEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 263 i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+ |+||.++ .| +|+||+++ +++ +++.+.......+.+.+.+++.++.++|+... + +...++
T Consensus 288 ~---t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 348 (439)
T 2oat_A 288 V---LLGKALS-GGLYPVSAVLC---DDD----IMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE------E--ENLAEN 348 (439)
T ss_dssp E---EECGGGG-TTSSCCEEEEE---CHH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred E---Eeccccc-CCCCCeEEEEE---CHH----HHhccCCCCcccCCCcCHHHHHHHHHHHHHHh------h--hhHHHH
Confidence 2 8999999 68 99999974 777 76666543334456777888887777775321 1 245677
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNV 409 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i 409 (435)
++++++++.+.|++++.+. +...++ .|.++|+.+ +...+ ..+ .++||.+.|++ |++++ ..+++++
T Consensus 349 ~~~~~~~l~~~L~~l~~~~-~~~~~~-~g~~~~v~l~~~~~~~~~~l~~~l-~~~Gv~v~~~~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 349 ADKLGIILRNELMKLPSDV-VTAVRG-KGLLNAIVIKETKDWDAWKVCLRL-RDNGLLAKPTHGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp HHHHHHHHHHHHTTSCTTT-EEEEEE-ETTEEEEEECCCSSCCHHHHHHHH-HHTTEECCBSSSSEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-cEEEEe-eeeEEEEEEecCccHHHHHHHHHH-HHCCeEEecCCCCEEEEECccCCCHHHH
Confidence 8888889999998775321 111233 345565533 24444 555 46899999864 88764 2488999
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|++++++
T Consensus 426 ~~~l~~l~~~l~~ 438 (439)
T 2oat_A 426 RESIEIINKTILS 438 (439)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=222.37 Aligned_cols=332 Identities=11% Similarity=0.004 Sum_probs=198.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||+.|.+.+.-++ .++.+++.+.+++..+. .| .+..++++++++++..... ..+++. +++||+
T Consensus 55 ~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~--~~~gg~ 123 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLR--FTGSGT 123 (453)
T ss_dssp TCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEE--EESCHH
T ss_pred CCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEE--EeCCHH
Confidence 4567899999964222232 34445555555554331 23 2345788888888733221 156787 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-----------CCCCe----eeeeecCCCCCCcChHhHHHHhhcC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-----------AQIPE----RTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-----------~g~~~----~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+|+.++..+...+.++++|++.+|+|.++...+.. .|... ..+.. + + .|+++|++++++.
T Consensus 124 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~--~-~d~~~le~~l~~~ 198 (453)
T 2cy8_A 124 ETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLI--R--P-DDIEGMREVFANH 198 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEE--C--T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeec--C--C-CCHHHHHHHHHhc
Confidence 99998853322133457899999999876543221 12211 01111 1 1 3899999988743
Q ss_pred CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
++++++|+++..+||||... +++++++|.++|++||+++|+||+|.++ ..+. ......+ +...+ +.|+||.
T Consensus 199 ~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~s~sK~ 270 (453)
T 2cy8_A 199 GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN---HGMQALL-DVQPD---LTCLAKA 270 (453)
T ss_dssp GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT---THHHHHH-TCCCS---EEEEEGG
T ss_pred CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc---hhhhHHh-CCCCc---EEEEChh
Confidence 23567776655567899765 7999999999999999999999999877 3321 2222222 22222 2389999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHH-----HhhccccCCChhHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQ-----IARAMYGSPPVHGILLVATILSD-PNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~ 345 (435)
++ .|+|+||+++ +++ +++.+.. .....+.+.+.+++.++.++|+. . .+...++++++
T Consensus 271 l~-~G~~~G~v~~---~~~----~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~---------~~~~~~~~~~~ 333 (453)
T 2cy8_A 271 SA-GGLPGGILGG---RED----VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL---------EDDVCAKINDL 333 (453)
T ss_dssp GG-TTSSCEEEEE---CHH----HHTTSSSCC---------CCCCHHHHHHHHHHHHHHH---------HTTHHHHHHHH
T ss_pred hh-CCcceEEEec---hHH----HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh---------hhhHHHHHHHH
Confidence 99 5999999974 777 6665543 11223456778888777777642 1 12334555666
Q ss_pred HHHHHHHHHhh----CCCCCccccccCcceeEecCCC-----------------------HH-HHHHHhhhccEEEeCCC
Q 013839 346 RTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGLT-----------------------PY-QVDRLAKEFHIYMTQDG 397 (435)
Q Consensus 346 ~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~~-----------------------~~-~~~~ll~~~gI~i~pgg 397 (435)
++++.+.|+++ +. ....++. |.++|+.+. .. +...++ ++||.+.|++
T Consensus 334 ~~~l~~~L~~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~~ 408 (453)
T 2cy8_A 334 GQFAREAMNHLFARKGL---NWLAYGR-FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGRG 408 (453)
T ss_dssp HHHHHHHHHHHHHHTTC---CEEEECC-TTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTTT
T ss_pred HHHHHHHHHHHHhhCCC---cEEEEEe-eeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeCCC
Confidence 66666666554 32 1123344 456666332 12 345554 6899998877
Q ss_pred cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 398 RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 398 Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
|+.+. ..+++++++++++|+++++++..
T Consensus 409 ~~~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 409 SVFLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 44332 23889999999999999877653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=219.49 Aligned_cols=329 Identities=13% Similarity=0.077 Sum_probs=208.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||+.|.+.+.-|+ .++.+++.+.+++..+....|. .....++++.+++++. . .+++. +++||+
T Consensus 54 ~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~--~-----~~~v~--~~~sgs 122 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWLYGAP-GEAEVLLAEKILGYVK--R-----GGMIR--FVNSGT 122 (434)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSSC-CHHHHHHHHHHHHHHC--T-----TCEEE--EESSHH
T ss_pred CCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHhCC--C-----CCEEE--EeCCHH
Confidence 5577899999874222232 3344445555555443223342 2334567777777652 1 45777 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-h-------------CCC------CeeeeeecCCCCCCcChHhHHH
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-D-------------AQI------PERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
+|+.++..+...+.++++|++.+|+|.++...+. . .|+ ++..++. .|++.|++
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~ 195 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALER 195 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHH
Confidence 9998885432224466889999999987543221 1 132 2333332 38899999
Q ss_pred HhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 188 DIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
++++.++++++|+++..+||||.+. +++.+++|.++|++||+++|+||+|.++..+. ......+ +...+ +.
T Consensus 196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~----~~~~~~~-~~~~d---i~ 267 (434)
T 2epj_A 196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL----EGAQGYF-NIEGD---II 267 (434)
T ss_dssp HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST----THHHHHH-TCCCS---EE
T ss_pred HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc----chhhHHh-CCCCC---ee
Confidence 9874323567777766667899876 79999999999999999999999998773321 1222222 22222 34
Q ss_pred cccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
|+||.++. |+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... + +...++++
T Consensus 268 s~sK~l~~-G~~~G~v~~---~~~----~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~------~--~~~~~~~~ 331 (434)
T 2epj_A 268 VLGKIIGG-GFPVGAVAG---SRE----VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE------E--EPVYSVSR 331 (434)
T ss_dssp EEEGGGGT-TSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH------H--SCHHHHHH
T ss_pred eecchhcC-Ccceeeeee---cHH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------h--cCHHHHHH
Confidence 89999995 999999974 777 766655421 12345677788877777764321 1 34556666
Q ss_pred HHHHHHHHHHHhh----CCCCCccccccCcceeEecCCC-----------------HHHH-HHHhhhccEEEeCCC--cE
Q 013839 344 RKRTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGLT-----------------PYQV-DRLAKEFHIYMTQDG--RI 399 (435)
Q Consensus 344 ~~~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~-~~ll~~~gI~i~pgg--Ri 399 (435)
++++++.+.|+++ +.. ....+. |.++|+.+. .+.+ ..+ .++||.+.|++ |+
T Consensus 332 ~~~~~l~~~L~~~~~~~~~~---~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 332 EAAKALEEAASEVLDRTGLP---YTINRV-ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEM-LRRGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---EEEEEE-TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHhhCCCc---EEEEEe-eeEEEEEEeCCCcccchhccccCHHHHHHHHHHH-HHCCeEEeccCCCcE
Confidence 7777777777654 421 122333 446665331 2234 445 46899999986 55
Q ss_pred Eec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 400 SMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 400 s~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+. ..+++++++++++|+++++++
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 432 238899999999999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=215.82 Aligned_cols=317 Identities=13% Similarity=0.063 Sum_probs=207.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC-----CCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL-----ESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
++.+.|+.+.+ + +.++.+.+++...+...... .|. ......++++.+++++ +.. ++++. +
T Consensus 27 ~~~~yld~~~~----~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~ 93 (416)
T 1qz9_A 27 EGVIYLDGNSL----G-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-GAR-----DGEVV--V 93 (416)
T ss_dssp TTCEECCTTTS----C-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-TCC-----TTSEE--E
T ss_pred CCeEeecCCCc----C-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc-CCC-----cccEE--E
Confidence 46777877763 1 33444444444444322110 011 1244578888888887 332 46787 8
Q ss_pred cCCchhHHHHHHHHHHHh------CCCCEE-EEcCCCChhhHHHH----hhC--CCCeeeeeecCCCCCCcChHhHHHHh
Q 013839 123 ALSGTGACRLFAEFQRRF------HPESHI-YFPDPTWSNHHNIW----RDA--QIPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~------~~gd~V-lv~~p~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
++|+++++.++ +..++ .+||+| ++..++|+.+...+ +.. |++++.++. +++|++++
T Consensus 94 ~~g~t~al~~a--l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i 162 (416)
T 1qz9_A 94 TDTTSINLFKV--LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAI 162 (416)
T ss_dssp CSCHHHHHHHH--HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHC
T ss_pred eCChhHHHHHH--HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHh
Confidence 99999998777 44333 899975 45556777654432 223 888777753 67888888
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA 269 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 269 (435)
. ++++++++++|+||||..++ +++|.++|++||+++|+|++|..... . .+ +... +.++++.|++
T Consensus 163 ~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-~--~~---~~~~----~~d~~~~s~~ 226 (416)
T 1qz9_A 163 D---QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAV-P--VD---LHQA----GADYAIGCTY 226 (416)
T ss_dssp S---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS-C--CC---HHHH----TCSEEEECSS
T ss_pred C---CCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccCc-C--CC---hhhc----CCCEEEecCc
Confidence 7 57899999999999999987 57999999999999999999863221 1 11 2111 2458889999
Q ss_pred ccccccCCcc-cEEEEEecChhHHHHHHHHHHHHh-----------------------hccccCCChhHHHHHHHHhCCh
Q 013839 270 KSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIA-----------------------RAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 270 K~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
|.++ +|.|+ ||+++ +++ +++.+.... .....+++...+.++..++...
T Consensus 227 K~l~-~g~~~~g~l~~---~~~----~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 298 (416)
T 1qz9_A 227 KYLN-GGPGSQAFVWV---SPQ----LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 298 (416)
T ss_dssp STTC-CCTTCCCEEEE---CTT----TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred ccCC-CCCCCeEEEEE---CHH----HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH
Confidence 9975 67888 99974 666 544443310 1112345566665555555321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCCccccccC----cceeEecCC-CHHHHHHHhhhccEEEeCC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKL----GSSLNWEHITNQ----LGMFCFSGL-TPYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~----~g~~~~~~~-~~~~~~~ll~~~gI~i~pg 396 (435)
. .+.+++.+++++++++++.+.|+++ + +.+..+. .+.++|+.+ +.+.+.+.|.++||.+...
T Consensus 299 ~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~ 369 (416)
T 1qz9_A 299 A-----QTDMASLRRKSLALTDLFIELVEQRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYR 369 (416)
T ss_dssp T-----TSCHHHHHHHHHHHHHHHHHHHHHHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEE
T ss_pred H-----hcCHHHHHHHHHHHHHHHHHHHHhhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccC
Confidence 1 0245677888899999999999876 4 3444442 244667655 3444544445789998653
Q ss_pred --C--cEEec--cCCCCcHHHHHHHHHHHHHhh
Q 013839 397 --G--RISMA--GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 --g--Ris~~--~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ||+++ ..+++++++++++|++++++.
T Consensus 370 ~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 370 EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 2 99986 458999999999999998754
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=225.52 Aligned_cols=343 Identities=10% Similarity=0.002 Sum_probs=201.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..+|+..|.+...-|+ .++.+++++.+++... .+ |....+..+.++++++++..... ...+++. +++||+
T Consensus 42 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~sGs 114 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGH-RKKELDDAIKKQLGKI-AH-STLLGMTNVPATQLAETLIDISP--KKLTRVF--YSDSGA 114 (448)
T ss_dssp TSCEEEETTHHHHTCSSCB-SCHHHHHHHHHHHTTC-SC-CCCSSSEEHHHHHHHHHHHHHSC--TTEEEEE--EESSHH
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhc-cC-ccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCchH
Confidence 5678999999864333332 2445555555665432 12 33334444556666666522211 1135777 999999
Q ss_pred hHHHHHHHHHHHh--CC----CCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCCCCCc--------
Q 013839 128 GACRLFAEFQRRF--HP----ESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPDSKSL-------- 180 (435)
Q Consensus 128 ~a~~~~~~~~~~~--~~----gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-------- 180 (435)
+|+..+..+.... .+ +|+|++++|+|.++.......+. ....++. ++.+..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 192 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDEC 192 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhh
Confidence 9999985333221 13 49999999999877543332222 2233332 222222
Q ss_pred ---ChHhHHHHhhcCCCCcEEEEeCCCC-CCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 181 ---DFAALMDDIKNAPDSSFFLLHPSAH-NPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 181 ---d~e~l~~~i~~~~~~~~~v~~~~p~-NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
|+++|++++.+.++++++|+++.++ |++|. ..+++.+++|.++|++||+++|+||+|.+++..+. ......+
T Consensus 193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~~~~ 269 (448)
T 3dod_A 193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEHE 269 (448)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhhhhc
Confidence 4788998886433456777776666 88885 45788899999999999999999999998875431 1111111
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH-------HhhccccCCChhHHHHHHHHhCChhh
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ-------IARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+.... +.++||.++ .| +|+||+++ +++ +++.+.+ .....+.+.+.+++.++.++|+...
T Consensus 270 -~~~~d---i~t~sK~l~-~G~~~ig~v~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 336 (448)
T 3dod_A 270 -NVQPD---LMAAGKGIT-GGYLPIAVTFA---TED----IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE- 336 (448)
T ss_dssp -TCCCS---EEEECGGGG-TTSSCCEEEEE---EHH----HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred -CCCCC---EEEeccccc-CCcCceEEEEE---CHH----HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHh-
Confidence 22122 346899998 59 59999974 778 7777765 3334556778888888888875321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--C--------------HHHHHHHhhhccE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--T--------------PYQVDRLAKEFHI 391 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~--------------~~~~~~ll~~~gI 391 (435)
+ +...++++++.+.+++.|+++.....+....+. |.+.|+.+ + .++...++ ++||
T Consensus 337 -----~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv 407 (448)
T 3dod_A 337 -----S--ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQL-GFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGM 407 (448)
T ss_dssp -----H--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTE
T ss_pred -----c--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee-eEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCc
Confidence 1 223344444445555555443110012222333 44555533 1 23445554 5799
Q ss_pred EEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 392 YMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 392 ~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.|+| ||++. ..+++++++++++|++++++..
T Consensus 408 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 408 LTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp ECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999986 88543 3388999999999999987654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=219.39 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=181.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh--------CCCCEEEEcCCCChhh---------
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF--------HPESHIYFPDPTWSNH--------- 156 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~--------~~gd~Vlv~~p~y~~~--------- 156 (435)
..++|+.+++++ +.. +++++ +++|+++|+.++ +..++ .+||+|+++.|+|..+
T Consensus 63 ~~~l~~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~ 132 (432)
T 3a9z_A 63 INTARASLAKMI-GGK-----PQDII--FTSGGTESNNLV--IHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVE 132 (432)
T ss_dssp HHHHHHHHHHHH-TCC-----GGGEE--EESCHHHHHHHH--HHHHHHHHHHHHHHC------------CCCEEEEETTC
T ss_pred HHHHHHHHHHHc-CCC-----cCeEE--EeCChHHHHHHH--HHHHHhhhhhccccCCccccccccccccCCeEEEecCc
Confidence 468999999998 332 45787 999999999988 44433 4899999999999865
Q ss_pred --------HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 013839 157 --------HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 157 --------~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 228 (435)
....+..|++++.++.. ++++.+|+++|++++. ++++++++++|+||||.+++.+ +|.++|++++
T Consensus 133 h~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~ 205 (432)
T 3a9z_A 133 HDSIRLPLEHLVEDQVAEVTFVPVS-KVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIMPIS---EISRRIKALN 205 (432)
T ss_dssp CHHHHHHHHHHHHTTSCEEEEECCC-TTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCcEEEEEecC-cccCCcCHHHHHHhcc---CCceEEEEECcccCcccccCHH---HHHHHHHhcC
Confidence 23345578999999873 3356799999999987 5789999999999999999865 7888899998
Q ss_pred ----------ceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH-HH
Q 013839 229 ----------HFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI-RS 297 (435)
Q Consensus 229 ----------~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~-~~ 297 (435)
+++|+|++|...... .+ +... . ..+++.|+||.+| .|+||+++ +++ + ..
T Consensus 206 ~~~~~~~~~~~~livDea~~~~~~~---~~---~~~~---~-~d~~~~s~~K~~g---~~~G~~~~---~~~----~~~~ 265 (432)
T 3a9z_A 206 QIRAASGLPRVLVHTDAAQALGKRR---VD---VEDL---G-VDFLTIVGHKFYG---PRIGALYV---RGV----GKLT 265 (432)
T ss_dssp HHHHHHTCCCCEEEEECTTTTTTSC---CC---HHHH---C-CSEEEEEGGGTTC---CSCEEEEE---TTB----TTTB
T ss_pred cccccccCCceEEEEEchhhhCCcc---cC---hhhc---C-CCEEEEehhHhcC---CcceEEEE---ccc----cccC
Confidence 999999998654321 11 1111 1 2356899999875 56999974 554 3 22
Q ss_pred HHHHH-------hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcccccc--
Q 013839 298 QIQQI-------ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITN-- 367 (435)
Q Consensus 298 ~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~-- 367 (435)
.+... ......+.+...+.++.+++... ++.+++.+++++++++++.+.|+++ +.. +....+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~--~~~~~~~~ 337 (432)
T 3a9z_A 266 PLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV------SENCETYEAHMRDIRDYLEERLEAEFGKR--IHLNSRFP 337 (432)
T ss_dssp CCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHGGG--EEESSCCT
T ss_pred CcCceeecCCccccccCCCcCHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHhccCCc--EEEeCCCC
Confidence 22210 11222456667776766666432 2456788889999999999999875 321 111111
Q ss_pred ----C--cceeEecCC--CHHHHHHHhhhccEEEeC-------------------C-------C--cEEeccC-CCCcHH
Q 013839 368 ----Q--LGMFCFSGL--TPYQVDRLAKEFHIYMTQ-------------------D-------G--RISMAGV-TTGNVN 410 (435)
Q Consensus 368 ----~--~g~~~~~~~--~~~~~~~ll~~~gI~i~p-------------------g-------g--Ris~~~~-~~e~i~ 410 (435)
. ...|.+.+. +.+.+...+ .+|.+.+ | + ||+++.. ++++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~ 415 (432)
T 3a9z_A 338 GVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVD 415 (432)
T ss_dssp TCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHH
T ss_pred cccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHH
Confidence 1 123344443 444332222 1344322 1 3 9998643 689999
Q ss_pred HHHHHHHHHHHhhh
Q 013839 411 YLANAIHEVTRSEQ 424 (435)
Q Consensus 411 ~~~~~l~~~l~~~~ 424 (435)
+++++|+++++++.
T Consensus 416 ~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 416 LIVQDLKQAVNQLE 429 (432)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=221.81 Aligned_cols=339 Identities=10% Similarity=0.037 Sum_probs=206.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..||+..|.+...-|. .++.+++++.+++..... ..+.+.....++++.+++++ +.. .+ +. +++|
T Consensus 46 ~~g~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~-----~~-v~--~~~g 115 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSGY-GRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWL-GGE-----YV-IF--FSNS 115 (452)
T ss_dssp TTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHH-TSC-----EE-EE--EESS
T ss_pred CCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhC-CCC-----ce-EE--EeCc
Confidence 35678999999954232332 244555555566543211 11112223345555555554 211 23 66 8999
Q ss_pred chhHHHHHHHHHHHh---C---CCCEEEEcCCCChhhHHHHhhCCCCe-------------eeeeecCCCCCCc-C----
Q 013839 126 GTGACRLFAEFQRRF---H---PESHIYFPDPTWSNHHNIWRDAQIPE-------------RTYHYYDPDSKSL-D---- 181 (435)
Q Consensus 126 g~~a~~~~~~~~~~~---~---~gd~Vlv~~p~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~-d---- 181 (435)
|++|+..+..+.... . ++|+|++.+|+|.++.......+... ..++..+...+.. |
T Consensus 116 gseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (452)
T 3n5m_A 116 GSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI 195 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCG
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhh
Confidence 999999985333211 4 77999999999988765544443322 1222100000000 1
Q ss_pred -----hHhHHHHhh-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 182 -----FAALMDDIK-NAPDSSFFLLHPSA-HNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 182 -----~e~l~~~i~-~~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+++|++.+. ..++++++++++++ +| ||..+ +++.+++|.++|++||+++|+||+|.+|+..+. .....
T Consensus 196 ~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~~ 271 (452)
T 3n5m_A 196 YDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGFM 271 (452)
T ss_dssp GGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchhh
Confidence 789999886 33346788888887 89 99766 888899999999999999999999998876531 11111
Q ss_pred HhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH------HhhccccCCChhHHHHHHHHhCChh
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ------IARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
.+ +.... +.+|||.++. | +|+||+++ +++ +++.+.+ .....+.+.+.+++.++.++|+...
T Consensus 272 ~~-~~~~d---i~t~sK~l~~-G~~~ig~~~~---~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 339 (452)
T 3n5m_A 272 NY-DVKPD---IITMAKGITS-AYLPLSATAV---KRE----IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIE 339 (452)
T ss_dssp GT-TCCCS---EEEECGGGGT-TSSCCEEEEE---EHH----HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHH
T ss_pred hc-CCCCC---EEeecccccC-CCcceEEEEE---CHH----HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 11 21122 3368999995 9 99999974 788 7776642 1123456778888888888775321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC----------C----HHHHHHHhhhcc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL----------T----PYQVDRLAKEFH 390 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~----------~----~~~~~~ll~~~g 390 (435)
+ +...++++++.+.+++.|+++ ..+ .+....+.+. |+++.+ + .+....+ .++|
T Consensus 340 ------~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~G 408 (452)
T 3n5m_A 340 ------N--ENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGL-LVGIELVNDKETKEPIDNDKIASVVNAC-KEKG 408 (452)
T ss_dssp ------H--TTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSS-CEEEEEEEETTTTEECCHHHHHHHHHHH-HHTT
T ss_pred ------h--ccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEE-EEEEEEecCCcccCCCCHHHHHHHHHHH-HHCC
Confidence 1 233455555555666666544 111 1333444554 444322 1 1233444 5689
Q ss_pred EEEeCCC----------cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 391 IYMTQDG----------RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 391 I~i~pgg----------Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
|.+.|++ ||+++. .+++++++++++|++++++
T Consensus 409 v~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 409 LIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999762 886432 3889999999999998753
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=216.30 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=186.4
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCE--EEEcCCCChhhH---HHH
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESH--IYFPDPTWSNHH---NIW 160 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~--Vlv~~p~y~~~~---~~~ 160 (435)
..|.+..+..++++.+++++ +.. ..+ ++.||++|+.++ +..++.+||+ |+++.++|.... ...
T Consensus 42 ~~~~~~~~~~~l~~~la~~~-~~~------~~i---~~~~g~~a~~~a--~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~ 109 (359)
T 3pj0_A 42 DIYGNGAVIEDFETKIAKIL-GKQ------SAV---FFPSGTMAQQIA--LRIWADRKENRRVAYHPLSHLEIHEQDGLK 109 (359)
T ss_dssp CBTTBSHHHHHHHHHHHHHH-TCS------EEE---EESCHHHHHHHH--HHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred CcccCCHHHHHHHHHHHHHh-CCC------cEE---EeCCHHHHHHHH--HHHHHhcCCCcEEEEeccceeeehhcchHH
Confidence 44777788899999999998 331 123 568889998877 6666678876 555555543321 122
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG 239 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~ 239 (435)
...|++++.++. +++.+|+++|+++ . ++++++++++||||| |.+++.+++++|+++|++||+++|+|++|..
T Consensus 110 ~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~ 182 (359)
T 3pj0_A 110 ELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLW 182 (359)
T ss_dssp HHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCG
T ss_pred HhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence 456888888875 3468999999887 3 678999999999998 7999999999999999999999999999754
Q ss_pred ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHH--HH
Q 013839 240 FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGI--LL 317 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q--~~ 317 (435)
+........... +.. ...+++.|+||.++.++ + ||++. +++ +++.++........+.....+ .+
T Consensus 183 ~~~~~~~~~~~~---~~~--~~d~~~~s~sK~~~~~~-g-g~~~~---~~~----l~~~~~~~~~~~~~~~~~~~~~~~a 248 (359)
T 3pj0_A 183 EITPFYQKSAEE---ICA--LFDSVYVSFYKGIGGIA-G-AILAG---NDD----FVQEAKIWKRRYGGDLISLYPYILS 248 (359)
T ss_dssp GGHHHHTCCHHH---HHT--TCSEEEEESSSTTCCSS-C-EEEEE---CHH----HHHHHHHHHHHTTCCCSCCHHHHHH
T ss_pred cchhhhCCCHHH---hhc--cCCEEEEeccccCCCcc-e-EEEEC---CHH----HHHHHHHHHHHhCCCcchhHHHHHH
Confidence 431100011112 211 22345568999987553 2 66643 888 777777644332222222222 22
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-ccCcceeEecCC--C----HHHHHHHhhhcc
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TNQLGMFCFSGL--T----PYQVDRLAKEFH 390 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~--~----~~~~~~ll~~~g 390 (435)
+...+. +.. +..+++.++++.+.+.|++++. +.+. .+..+.|+|+.+ . .+.+.+.+.++|
T Consensus 249 ~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 315 (359)
T 3pj0_A 249 ADYYFE---------KRI-GKMAEYFEAAKGLAERFNSCSG---VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETG 315 (359)
T ss_dssp HHHHHH---------HHG-GGHHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH---------HHH-HHhHHHHHHHHHHHHHHhhCCC---ceeeccCCcceEEEEEecCccchhHHHHHHHHHhcC
Confidence 222221 222 3334567788889999988732 4443 345555666543 2 345555567799
Q ss_pred EEEeCCC----------cEEecc----CCCCcHHHHHHHHHHH
Q 013839 391 IYMTQDG----------RISMAG----VTTGNVNYLANAIHEV 419 (435)
Q Consensus 391 I~i~pgg----------Ris~~~----~~~e~i~~~~~~l~~~ 419 (435)
|.+.||. |++++. .+.+++++++++|++.
T Consensus 316 V~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 316 VGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 9999972 776642 3566677777777654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=219.39 Aligned_cols=277 Identities=10% Similarity=0.060 Sum_probs=189.2
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCc-hhHHHHHHHHHHHhCC---CCEEEEcCCCChhhHHHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSG-TGACRLFAEFQRRFHP---ESHIYFPDPTWSNHHNIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg-~~a~~~~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 169 (435)
..++++.+++++ +.. . +++++ +++|+ ++|+.++ +.+++.+ ||.|+++.++|.. ...++..| +++.
T Consensus 50 ~~~l~~~la~~~-g~~-~---~~~v~--~~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~ 118 (360)
T 1w23_A 50 HEQAQNLLRELL-QIP-N---DYQIL--FLQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHI 118 (360)
T ss_dssp HHHHHHHHHHHH-TCC-T---TEEEE--EESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEE
T ss_pred HHHHHHHHHHHh-CCC-C---CceEE--EECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEE
Confidence 457888888887 332 1 35777 88898 9999888 6666655 5667777666644 23456789 9999
Q ss_pred eeecCCCCCCcChHhHHH-HhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 170 YHYYDPDSKSLDFAALMD-DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~-~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
+++. ++++.+|++++++ +++ ++++++++++|+||||.+++ ++ +++||+++|+|++|..+... .
T Consensus 119 v~~~-~~~~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~~-~--- 182 (360)
T 1w23_A 119 AAST-KANSYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSRP-L--- 182 (360)
T ss_dssp EEEC-GGGTSCSCCCGGGCCCC---TTEEEEEEESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSSC-C---
T ss_pred eecc-cccCcCCccchHhhccC---CCCCEEEEeCCCCCcceecc--cc------cccCCceEEEechhhcCCCC-c---
Confidence 9883 3233489999988 775 67899999999999999987 22 23899999999998765432 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh------------hccccCCChhHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA------------RAMYGSPPVHGIL 316 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~q~ 316 (435)
++. .. .++++|+||.+|++| +||+++ +++ +++.+.... .....+++...+.
T Consensus 183 --~~~---~~---di~~~s~sK~~~~~G--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (360)
T 1w23_A 183 --KVN---QF---GMIYAGAQKNLGPSG--VTVVIV---KKD----LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIY 245 (360)
T ss_dssp --CGG---GC---SEEEEETTTTTSCTT--CEEEEE---EHH----HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred --Ccc---cC---CEEEEEcccccCCCC--cEEEEE---cHH----HHhhcccCCcchhhhhhhhhccCCCCCCCHHHHH
Confidence 111 11 378999999999666 899974 666 554443321 1122345566666
Q ss_pred HHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cc--CcceeEecCCC----H-HHHHHHhh
Q 013839 317 LVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TN--QLGMFCFSGLT----P-YQVDRLAK 387 (435)
Q Consensus 317 ~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~~g~~~~~~~~----~-~~~~~ll~ 387 (435)
++..++.... .. .+++.+++++++++.+.+.|++++. .+... .+ .+++++|+.+. . ++++. |+
T Consensus 246 ~~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 317 (360)
T 1w23_A 246 MLRNVLDWIK-----DLGGAEAIAKQNEEKAKIIYDTIDESNG--FYVGHAEKGSRSLMNVTFNLRNEELNQQFLAK-AK 317 (360)
T ss_dssp HHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTTTT--SSEESSCGGGBCSSEEEEECSSHHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHccC--cccccCCchhccCcEEEEEcCCCccHHHHHHH-HH
Confidence 6666664211 11 4677888999999999999988752 11222 12 35667777663 2 23344 46
Q ss_pred hccEEEeCC----C--cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 388 EFHIYMTQD----G--RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 388 ~~gI~i~pg----g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
++||.+.++ + |++++. .+++++++++++|++++++
T Consensus 318 ~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 318 EQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 689999887 2 999864 2788899999999988753
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=207.09 Aligned_cols=310 Identities=9% Similarity=0.020 Sum_probs=207.0
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
++|+|+. | + .++..++.+.+.+... .|.+..+..++++++++++. . ++++ +++||++|+
T Consensus 9 ~~i~~~~--p-~-----~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~-------~~~~--~~~~gt~al 67 (393)
T 1mdo_A 9 DFLPFSR--P-A-----MGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTG-N-------QYAV--AVSSATAGM 67 (393)
T ss_dssp CCBCSCC--C-C-----CCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHC-C-------SEEE--EESCHHHHH
T ss_pred cccccCC--C-C-----CCHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhC-C-------CcEE--EecChHHHH
Confidence 4667765 3 2 2334444444444322 24456788999999999983 2 1455 899999999
Q ss_pred HHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 131 RLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 131 ~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++++++ ||||
T Consensus 68 ~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~---~~~~~v~~~---~~~G 138 (393)
T 1mdo_A 68 HIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAIT---PQTKAIIPV---HYAG 138 (393)
T ss_dssp HHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCC---TTEEEECCB---CGGG
T ss_pred HHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEec-cCCcCCCCHHHHHHhcC---CCceEEEEe---CCCC
Confidence 988 6666 789999999999999999999999999999998 34557899999999997 567888774 5899
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCc-cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGF-ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
...+ +++|.++|+++|+++|+|++|... .+.+ .. + +. .++++.|+||..+++|.|+||++ +++
T Consensus 139 ~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~------~-~~--~d~~~~S~~k~K~l~~~~~g~~~--~~~ 202 (393)
T 1mdo_A 139 APAD---LDAIYALGERYGIPVIEDAAHATGTSYKG--RH------I-GA--RGTAIFSFHAIKNITCAEGGIVV--TDN 202 (393)
T ss_dssp CCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT--EE------T-TS--SSEEEEECCTTSSSCSSSCEEEE--ESC
T ss_pred CcCC---HHHHHHHHHHcCCeEEEECccccCCeECC--ee------c-CC--CCeEEEeCCCCCccccccceEEE--eCC
Confidence 8764 679999999999999999998753 3321 10 1 11 57889999944334556899996 434
Q ss_pred hhHHHHHHHHHHHHhhccc------------------------cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 289 SKQAAAIRSQIQQIARAMY------------------------GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
++ +++.+........ ...+.+...++...+ +.+++..++.++
T Consensus 203 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l----------~~~~~~~~~~~~ 268 (393)
T 1mdo_A 203 PQ----FADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKLDALNARRAA 268 (393)
T ss_dssp HH----HHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 77 6666665432111 012323222222222 223445555666
Q ss_pred HHHHHHHHHHhhCCCCCcccc--c----cCcceeEecCC-------CHHHHHHHhhhccEEEeCC---------------
Q 013839 345 KRTTLRQNLEKLGSSLNWEHI--T----NQLGMFCFSGL-------TPYQVDRLAKEFHIYMTQD--------------- 396 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~--~----~~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pg--------------- 396 (435)
+++.+.+.|++++. ... + +.+++++|+.+ +.+.+.+.|.++||.+.++
T Consensus 269 ~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 269 IAAQYHQAMADLPF----QPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp HHHHHHHHHHTSSC----EECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHST
T ss_pred HHHHHHHHHhcCCc----ccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCC
Confidence 77888888887752 222 1 23445566543 4455544556789988763
Q ss_pred -----------C---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 -----------G---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 -----------g---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
. |+++. ..+++++++++++|+++++...
T Consensus 345 ~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 345 TLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp TCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred ccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 66664 2388999999999999876544
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=216.63 Aligned_cols=325 Identities=13% Similarity=0.066 Sum_probs=216.1
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC---CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS---ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+.|+ |.+ . ...+.+++++...+. . ...|.+ .+|..++++++++++....+. +..++ +++||+
T Consensus 67 ~~~~lg-~~~-~----~~~p~v~~~~~~~~~-~-~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~~~--~~~ggt 133 (474)
T 1wyu_B 67 TFYPLG-SCT-M----KYNPKLHEEAARLFA-D-LHPYQDPRTAQGALRLMWELGEYLKALTGM---DAITL--EPAAGA 133 (474)
T ss_dssp SCCCBT-TTC-C----CCCCHHHHHHHHTTS-S-CCTTSCGGGCHHHHHHHHHHHHHHHHHHTC---SEEEC--CCSSHH
T ss_pred Cccccc-ccc-c----cCCHHHHHHHHHHHH-h-cCCCCchhhChHHHHHHHHHHHHHHHHHCC---Cceee--cChHHH
Confidence 467777 542 1 233445555555432 2 233554 567778888887776322111 11233 679999
Q ss_pred hHHHHHHHH-HH-HhCCCC-----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 128 GACRLFAEF-QR-RFHPES-----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 128 ~a~~~~~~~-~~-~~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
+|+.+++.. .. ...+|| +|+++.|+|+.+...++..|++++.++. .+++.+|+++|++++. +++++++
T Consensus 134 ~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~--~~~~~~d~~~L~~~i~---~~t~~v~ 208 (474)
T 1wyu_B 134 HGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRELG---PHVAALM 208 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHHCS---TTEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecC--CCCCCcCHHHHHHhhC---CCceEEE
Confidence 998875322 11 235888 9999999999999999999999999987 3457899999999997 6789999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc-C---
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY-G--- 276 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G--- 276 (435)
+++| ||||.+. +++++|.++|++||+++|+|++|.....+.. .. ..+ +.++++.|++|.++.+ |
T Consensus 209 ~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~--~~---~~~----g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 209 LTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWA--RP---GDM----GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp ECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC--CH---HHH----TCSEEECCTTTTTCCCCTTSC
T ss_pred EECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccCC--Cc---ccC----CCcEEEEeCccccccCCCCCC
Confidence 9997 6899872 4688999999999999999999966554321 11 111 3568888999999877 4
Q ss_pred CcccEEEEEecChhHHHHHHHHHHH-Hh------------------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQ-IA------------------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~-~~------------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
.|+||+++ +++ +++.+.. .. +....+.+.+++.++..++...+ .+.+++
T Consensus 277 ~~~G~~~~---~~~----l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-----~~~l~~ 344 (474)
T 1wyu_B 277 PGSGPVGV---KAH----LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGLKK 344 (474)
T ss_dssp CCCCCEEE---CGG----GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred CCeEEEEE---cHH----HHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH-----HHHHHH
Confidence 59999974 666 5554431 00 00112345566666666664321 255777
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccCccee-Eec----CCCHHHH-HHHhhhccEEEeC-------CC--cEEec
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMF-CFS----GLTPYQV-DRLAKEFHIYMTQ-------DG--RISMA 402 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~-~~~----~~~~~~~-~~ll~~~gI~i~p-------gg--Ris~~ 402 (435)
..+++.++++++.+.|+++|. .+..+...+. .|+ +.+.+.+ ..|+ ++||.+.. .+ ||+++
T Consensus 345 ~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~~~~~~~~~~~~~~lRis~~ 419 (474)
T 1wyu_B 345 AAALAVLNARYLKELLKEKGY----RVPYDGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHPPTVYFPLIVKEALMVEPT 419 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----BCSSCSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCCCEESCSTTSTTCEEECCC
T ss_pred HHHHHHHHHHHHHHHHhhcCc----EecCCCCcceEEEEEcCCCCCHHHHHHHHH-HCCccccccccccccCCEEEEEee
Confidence 788899999999999988753 3322222221 333 3355545 5554 56997531 12 99986
Q ss_pred cC-CCCcHHHHHHHHHHHHHh
Q 013839 403 GV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 403 ~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.. +.+++++++++|++++++
T Consensus 420 ~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 420 ETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TTSCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 42 678999999999998865
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=218.91 Aligned_cols=342 Identities=12% Similarity=0.024 Sum_probs=201.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.+...-|. .++.+++++.+++... ..|....+..+.++++++++...... ...+++. +++||+
T Consensus 59 ~g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~--~~~sGs 132 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSA--LFNSGS 132 (451)
T ss_dssp TSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEE--EESSHH
T ss_pred CCCEEEEcCCCccccccCC-CCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEE--EeCcHH
Confidence 5677899998864232222 2445555555665432 22443344445555555555221110 0034777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC--------------CeeeeeecCC--CC-CCc--------Ch
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI--------------PERTYHYYDP--DS-KSL--------DF 182 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--~~-~~~--------d~ 182 (435)
+|+.++..+......+++|++.+++|.++.......+. .+..++.... +. +++ ++
T Consensus 133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (451)
T 3oks_A 133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence 99999853332223458999999999877654433222 2344443100 00 011 24
Q ss_pred HhHHHHhhcC-CCCcEEEEeCCCCCCCC-C-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 183 AALMDDIKNA-PDSSFFLLHPSAHNPTG-V-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 183 e~l~~~i~~~-~~~~~~v~~~~p~NPtG-~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+.+++.+.+. .+...++++..|.|++| . ..+++.+++|.++|++||+++|+||+|.++...+. ......+ +..
T Consensus 213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~ 288 (451)
T 3oks_A 213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEHE-GID 288 (451)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCC
T ss_pred HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhhc-CCC
Confidence 4444555421 12334444446666654 4 44677799999999999999999999998865431 1111111 222
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
.+ +.||||.++. |+|+||+++ +++ +++.+.......+.+.+.++|.++.++|+... + +.+.
T Consensus 289 pd---i~t~sK~l~~-G~~iG~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~ 349 (451)
T 3oks_A 289 PD---LIVTAKGIAG-GLPLSAVTG---RAE----IMDSPHVSGLGGTYGGNPIACAAALATIETIE------S--EGLV 349 (451)
T ss_dssp CS---EEEECGGGGT-TSSCEEEEE---EHH----HHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHH
T ss_pred CC---eeeehhhhhC-CcceEEEEE---CHH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh------h--hhHH
Confidence 22 2389999984 999999964 777 77777655555667888899988888875321 1 1233
Q ss_pred HHHHHHHHHHHHHHH----hhCCCCCccccccCcceeEecCC--------C---HHHHHHHhhhccEEEeCCC------c
Q 013839 340 DRIQRKRTTLRQNLE----KLGSSLNWEHITNQLGMFCFSGL--------T---PYQVDRLAKEFHIYMTQDG------R 398 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~--------~---~~~~~~ll~~~gI~i~pgg------R 398 (435)
++++++.+++++.|+ .++. +....+. |.|+|+.+ + ...+.+.+.++||.+.|+| |
T Consensus 350 ~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 425 (451)
T 3oks_A 350 ARAQQIEKIMKDRLGRLQAEDDR---IGDVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVR 425 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC---eEEEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEE
Confidence 444444444444444 3332 2233333 44555533 1 2234333456899999864 7
Q ss_pred EEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 399 ISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 399 is~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
|+++. .+++++++++++|++++++
T Consensus 426 i~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 426 FLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 76543 3889999999999998863
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=216.90 Aligned_cols=349 Identities=11% Similarity=0.001 Sum_probs=212.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...||+..|.....-|. .++.+++++.+++... ...|....+..+.++++++.+..... ...+++. +++||
T Consensus 52 ~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~--~~~sG 125 (472)
T 3hmu_A 52 SEGEEILDAMAGLWCVNIGY-GRDELAEVAARQMREL-PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVF--FAGGG 125 (472)
T ss_dssp TTCCEEECTTHHHHTCTTCB-CCHHHHHHHHHHHHHC-SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEE--EESSH
T ss_pred CCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCCH
Confidence 35678999998854232332 2444555555555422 11233323333444444444421110 1135777 99999
Q ss_pred hhHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCCC------------eeeeeecC--C-CCCCcC----
Q 013839 127 TGACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQIP------------ERTYHYYD--P-DSKSLD---- 181 (435)
Q Consensus 127 ~~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~~------------~~~v~~~~--~-~~~~~d---- 181 (435)
++|++.+..+.... .++++|++.+|+|.++.......+.. +..++... . +++ .|
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~ 204 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEF 204 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHH
Confidence 99999985433221 24689999999998876544433332 22333200 0 111 23
Q ss_pred ----hHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++|++.+.+. ++++++|+++.++|++|.+. +++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 205 ~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~a~~~~ 281 (472)
T 3hmu_A 205 GLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN---WFGTQTM 281 (472)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc---cchhHHh
Confidence 78888888642 24567888877888888866 888999999999999999999999998876541 1122222
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
+...+++ ++||.++..|+|+||+++ +++ +++.+... ....+.+.+.+++.++.++|+... +
T Consensus 282 -~v~pdi~---t~sK~l~gg~~plG~v~~---~~~----i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~------~ 344 (472)
T 3hmu_A 282 -GIRPHIM---TIAKGLSSGYAPIGGSIV---CDE----VAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE------E 344 (472)
T ss_dssp -TCCCSEE---EECGGGTTTSSCCEEEEE---EHH----HHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH------H
T ss_pred -CCCCcee---eechhhhcCCcceEEEEE---CHH----HHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH------H
Confidence 2222233 689999855599999974 788 77777321 223356778888888888875321 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhCCCCCccccccCcceeEec-CCC--------------HHHHHHHhhhccEEEeCCC
Q 013839 334 EVKIMADRIQ-RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS-GLT--------------PYQVDRLAKEFHIYMTQDG 397 (435)
Q Consensus 334 ~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~-~~~--------------~~~~~~ll~~~gI~i~pgg 397 (435)
+...++++ ++.+++++.|+++.....+....+.+.++.+. .-+ ...+.+.+.++||.+.|+|
T Consensus 345 --~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g 422 (472)
T 3hmu_A 345 --ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG 422 (472)
T ss_dssp --TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC
Confidence 24455666 66777777776653111233444555544332 111 2334333456899999876
Q ss_pred ---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 ---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 ---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||+.. ..+++++++++++|++++++..
T Consensus 423 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 423 DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78732 3489999999999999987644
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=214.24 Aligned_cols=323 Identities=13% Similarity=0.062 Sum_probs=201.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||..|.+.+.-|+ .++.+++++.+++..+....|.. .-..++.+.+++++ + . ++++. +++||+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~-~-----~~~v~--~~~~g~ 118 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGH-AHPKVLARVRETLERGLTFGAPS-PLEVALAKKVKRAY-P-F-----VDLVR--FVNSGT 118 (424)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSSCC-HHHHHHHHHHHHHC-T-T-----CCEEE--EESSHH
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHhC-C-C-----CCEEE--EeCCHH
Confidence 4567899998864222232 34445555555554432223322 22345666666654 2 1 46777 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-h-------------CCC------CeeeeeecCCCCCCcChHhHHH
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-D-------------AQI------PERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
+|+.++..+...+.+++.|++.+|+|.++...+. . .|. +++.++. .|+++|++
T Consensus 119 ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~ 191 (424)
T 2e7u_A 119 EATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLRE 191 (424)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHH
Confidence 9998885332224456889999999987654221 1 121 1222221 38899999
Q ss_pred HhhcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 188 DIKNAPDSSFFLLHPSAHNP-TGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NP-tG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
.+++.++++++|++ +|+|| ||..+ +++.+++|.++ ++||+++|+||+|.++..+. ......+ +...+ +
T Consensus 192 ~l~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~----~~~~~~~-~~~~d---i 261 (424)
T 2e7u_A 192 VLKRRGEEIAAIIF-EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAF----GGATELL-GLKPD---L 261 (424)
T ss_dssp HHHHHGGGEEEEEE-CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSST----THHHHHH-TCCCS---E
T ss_pred HHHhCCCCEEEEEE-eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccch----hHHHHHh-CCCcc---h
Confidence 88742224555555 56554 89765 79999999999 99999999999999873321 1222222 22222 2
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
.|+||.++ .|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... + .+...+++
T Consensus 262 ~s~sK~l~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~-~~~~~~~~ 326 (424)
T 2e7u_A 262 VTLGKILG-GGLPAAAYAG---RRE----IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLE------E-NPGYYAYL 326 (424)
T ss_dssp EEECGGGG-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHH------H-CTHHHHHH
T ss_pred hhhhhhhh-CCcceEEEEE---cHH----HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHH------h-ccHHHHHH
Confidence 38999999 6999999974 777 776665421 12345677788888777775321 1 13456667
Q ss_pred HHHHHHHHHHHHhh----CCCCCccccccCcceeEecCCC-----------------H-HHHHHHhhhccEEEeCCC--c
Q 013839 343 QRKRTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGLT-----------------P-YQVDRLAKEFHIYMTQDG--R 398 (435)
Q Consensus 343 ~~~~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~~-----------------~-~~~~~ll~~~gI~i~pgg--R 398 (435)
+++++++.+.|+++ +.. ...++. |.|+|+.+. . ++...+ .++||.+.|++ |
T Consensus 327 ~~~~~~l~~~L~~~~~~~~~~---~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~ 401 (424)
T 2e7u_A 327 EDLGARLEAGLKEVLKEKGLP---HTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGL-LDRGIYWPPSNFEA 401 (424)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---CEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH-HTTTEECCSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCc---eEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHH-HHCCeEEeccCCCc
Confidence 77777777777664 421 123344 456776442 1 233555 46899999986 4
Q ss_pred --EEeccCCCCcHHHHHHHHHHH
Q 013839 399 --ISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 399 --is~~~~~~e~i~~~~~~l~~~ 419 (435)
+++. .+++++++++++|+++
T Consensus 402 ~~~~~~-~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 402 AFLSVA-HREEDVEKTLEALRKA 423 (424)
T ss_dssp EECCTT-CCHHHHHHHHHHHHHH
T ss_pred eEeecc-CCHHHHHHHHHHHHHh
Confidence 4433 3889999999999875
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-24 Score=206.48 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=153.4
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh----CCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD----AQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~ 168 (435)
...+|++.++++. +. ++++ ++++|++|+.++ +.+++.+||+|++++|+|.++...+.. .|++++
T Consensus 82 ~~~~l~~~la~~~-g~-------~~~~--~~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~ 149 (414)
T 3ndn_A 82 TVSVFEERLRLIE-GA-------PAAF--ATASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTV 149 (414)
T ss_dssp HHHHHHHHHHHHH-TC-------SEEE--EESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred HHHHHHHHHHHHH-CC-------CcEE--EECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEE
Confidence 3456777777776 32 2444 799999998887 777789999999999999998776644 899998
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++.. |+++|++++. +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 150 ~v~~~-------d~~~l~~ai~---~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~---- 212 (414)
T 3ndn_A 150 FVDGD-------DLSQWERALS---VPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ---- 212 (414)
T ss_dssp EECTT-------CHHHHHHHTS---SCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC----
T ss_pred EeCCC-------CHHHHHHhcC---CCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 88751 7899999997 67889999999999999875 6699999999999999999986322110
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHH-HHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRS-QIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
+ .. ...++++.|+||.++.+| +++|++++ +++ .+. .++..........+.....++...+.
T Consensus 213 --~----~~-~g~div~~S~sK~l~~~G~~~~G~vv~---~~~----~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~--- 275 (414)
T 3ndn_A 213 --G----FP-LGVDVVVYSGTKHIDGQGRVLGGAILG---DRE----YIDGPVQKLMRHTGPAMSAFNAWVLLKGLE--- 275 (414)
T ss_dssp --C----GG-GTCSEEEEETTTTTTCSSCCCCEEEEE---CHH----HHTTHHHHHHHHHCCCCCHHHHHHHHHHGG---
T ss_pred --c----hh-cCCCeEeccCCccccCCCCceEEEEEE---CHH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Confidence 0 01 134688999999999888 88999864 666 443 45543333334445544443333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++++.+.+.|++.+
T Consensus 276 -------~l~~r~~~~~~~a~~l~~~L~~~p 299 (414)
T 3ndn_A 276 -------TLAIRVQHSNASAQRIAEFLNGHP 299 (414)
T ss_dssp -------GHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 234455666777788888887764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=208.77 Aligned_cols=313 Identities=10% Similarity=-0.004 Sum_probs=206.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
...++|+.|.| + ... +.+++...... ..|.+..+..++++++++++... +++ ++.||++|
T Consensus 6 ~~~~~l~~~~~-~-----~~~--~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~~--------~~~--~~~~gt~a 65 (374)
T 3uwc_A 6 VPYSYLERQFA-D-----IEP--YLNDLREFIKT--ADFTLGAELEKFEKRFAALHNAP--------HAI--GVGTGTDA 65 (374)
T ss_dssp BCSCCHHHHTS-S-----CHH--HHHHHHHHHHH--TCCSSCHHHHHHHHHHHHHTTCS--------EEE--EESCHHHH
T ss_pred ceeeccccCCC-C-----chH--HHHHHHHHHHc--CCcccChhHHHHHHHHHHHhCCC--------cEE--EeCCHHHH
Confidence 45778888885 1 122 33333333221 23777789999999999998322 344 79999999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++.. +++.+|++++++++. +++++++ |+|||
T Consensus 66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~---~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAIT---DKTKAIM---PVHYT 135 (374)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCC---TTEEEEC---CBCGG
T ss_pred HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCC---CCceEEE---EeCCc
Confidence 8888 6666 7899999999999999999999999999999883 568899999999887 5677776 79999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEe
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILC 286 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~ 286 (435)
|...+ +++|.++|++||+++|+|++|..+...+. . . .... .++++.|+| |.++.+|. .|+++ +
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~--~---~~~~--~d~~~~s~~~~K~l~~~g~-~g~~~--~ 200 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND--K--F---VGSW--GQFACFSLHPLKNLNVWSD-AGVII--T 200 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--E--E---TTSS--SSEEEEECSSSSSSCCSSC-CEEEE--E
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC--e--e---cccc--ccEEEEeCCCCCcCCccce-eEEEE--e
Confidence 99765 66899999999999999999875432111 0 0 1111 256677766 99985465 67775 4
Q ss_pred cChhHHHHHHHHHHHHhhcc------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 287 VDSKQAAAIRSQIQQIARAM------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
.+++ +.+.+....... ....+.+.+.+....+ +.+++..++.+++.+.+.+.|+
T Consensus 201 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~ 266 (374)
T 3uwc_A 201 HSDE----YAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIAHLYDQSFV 266 (374)
T ss_dssp SCHH----HHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHHHHHHHHTG
T ss_pred CCHH----HHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566 666565543210 0111222221111111 2234566667777788888887
Q ss_pred hhCCCCCcccc-ccCcceeEe----c-CCCHHHHHHHhhhccEEEeCCC-------------------------------
Q 013839 355 KLGSSLNWEHI-TNQLGMFCF----S-GLTPYQVDRLAKEFHIYMTQDG------------------------------- 397 (435)
Q Consensus 355 ~~~~~~~~~~~-~~~~g~~~~----~-~~~~~~~~~ll~~~gI~i~pgg------------------------------- 397 (435)
+++.. +... .+.++...| + ..+.+.+.+.|.++||.+.++.
T Consensus 267 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 344 (374)
T 3uwc_A 267 DLSEF--IDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVI 344 (374)
T ss_dssp GGTTT--EECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEE
T ss_pred cCCCe--EEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEE
Confidence 76510 1221 122221222 1 2255556555567899987651
Q ss_pred cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 398 RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+++.. .+++++++++++|++++++.
T Consensus 345 rl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 345 TLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 565432 47899999999999998753
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=204.24 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=169.0
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeee
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYH 171 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~ 171 (435)
++++.+++++. . ++.+ ++.+|++|+.++ +.+++.+||+|++++|+|..+...+ +..|++++.++
T Consensus 2 ~l~~~la~~~g-~------~~~i---~~~sG~~a~~~~--~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEH-A------EACA---ATASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHT-C------SEEE---EESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhC-C------CeEE---EeCChHHHHHHH--HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 58999999983 2 1233 466779999888 6666889999999999999887665 45788888776
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCceeeeeccCCCccCCCCcccHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV-KGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
. .|++++++.++ ++++++++++|+||||..++ +++|.++|++ ||+++|+|++|..+....
T Consensus 70 ~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------ 130 (331)
T 1pff_A 70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------ 130 (331)
T ss_dssp T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred C-------CCHHHHHHhhc---CCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence 4 37889999887 67899999999999999986 6799999999 999999999987544321
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCc-ccEEEEEecCh-hHHHHHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhh
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHR-VGCLSILCVDS-KQAAAIRSQIQQIARA-MYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~R-vG~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+. + .+.++++.|+||.++.+|.| +||+++ ++ + +++.++..... ...+.+.+.+.++...+..
T Consensus 131 ~~----~-~~~d~~~~s~~K~~~~~~~r~~G~~~~---~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--- 195 (331)
T 1pff_A 131 PL----D-LGVDIVVHSATKYINGHTDVVAGLVCS---RADI----IAKVKSQGIKDITGAIISPHDAWLITRGTLT--- 195 (331)
T ss_dssp GG----G-GTCSEEEEETTTTTSSSSSCCCEEEEE---CHHH----HHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---
T ss_pred hh----h-cCCcEEEEECccccCCCCCceEEEEEe---CcHH----HHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---
Confidence 11 1 24689999999999999999 789964 66 7 77777775544 3456677776665555431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------C-----CCccccc----cCcceeEecCCCHHHHHHHhhhccEE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGS------S-----LNWEHIT----NQLGMFCFSGLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~-----~~~~~~~----~~~g~~~~~~~~~~~~~~ll~~~gI~ 392 (435)
.....++..++.+.+.+.+++... + .++.+.. ..++++.+.-.+.+.+.+++++.||.
T Consensus 196 -------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 196 -------LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVV 268 (331)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSS
T ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCc
Confidence 122223334444444455543210 0 0112211 13444443322666777777889996
Q ss_pred Ee
Q 013839 393 MT 394 (435)
Q Consensus 393 i~ 394 (435)
+.
T Consensus 269 ~~ 270 (331)
T 1pff_A 269 SL 270 (331)
T ss_dssp EE
T ss_pred ee
Confidence 53
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=211.91 Aligned_cols=338 Identities=13% Similarity=0.051 Sum_probs=197.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..+|+..|...+.-|. .++++++++.+++.......| +.....+|.+.+++++. . .+++. +++||+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~--~-----~~~v~--~~~sGs 119 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP--T-----MDMVR--MVNSGT 119 (429)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST--T-----CSEEE--EESSHH
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC--C-----CCEEE--EeCcHH
Confidence 5678999999874232222 244555555566654323334 33455677777777763 1 45777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCC--CCeeeeeecC-------CCC---CCcChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQ--IPERTYHYYD-------PDS---KSLDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g--~~~~~v~~~~-------~~~---~~~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+.....+++.|++.+++|.+...... ..+ ......+... ... ...|+++|++++++.++
T Consensus 120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 4e77_A 120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQ 199 (429)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCC
Confidence 9999985433333466899999999977654211 111 0000000000 000 01288999999986544
Q ss_pred CcEEEEeCCCCCCC-CCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 195 SSFFLLHPSAHNPT-GVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 195 ~~~~v~~~~p~NPt-G~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++|++ +|+||+ |... +.+.+++|.++|++||+++|+||+|.+| ..+. ......+ +...+ +.|+||.+
T Consensus 200 ~~~~vi~-ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~---~~~~~~~-~~~pd---i~t~sK~~ 270 (429)
T 4e77_A 200 EVACIIV-EPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL---AGAQDYY-HVIPD---LTCLGKII 270 (429)
T ss_dssp TEEEEEE-CSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT---TCHHHHT-TCCCS---EEEEEGGG
T ss_pred CEEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc---chHHHhc-CCCCC---eeeecccc
Confidence 5555554 555555 4443 3556999999999999999999999988 3321 1122222 22122 34899999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
+ +|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+.... ++..++.++..+..++.|
T Consensus 271 ~-~G~~~G~~~~---~~~----~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L 338 (429)
T 4e77_A 271 G-GGMPVGAFGG---RRE----VMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ----VGVYETLTELTDSLATGL 338 (429)
T ss_dssp G-TTSCCEEEEE---CHH----HHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEE---CHH----HHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHH
Confidence 9 8999999964 888 777665421 233456788888887777752110 022222333333333333
Q ss_pred HHHHHhhCCCCCccccccCcceeEecCC--C-----------------HHHHHHHhhhccEEEeCCC--cEEec-cCCCC
Q 013839 350 RQNLEKLGSSLNWEHITNQLGMFCFSGL--T-----------------PYQVDRLAKEFHIYMTQDG--RISMA-GVTTG 407 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~-----------------~~~~~~ll~~~gI~i~pgg--Ris~~-~~~~e 407 (435)
.+.+..++. ....+..|.|+|+.+ . .++...+ .++||.+.+++ |+.+. ..+++
T Consensus 339 ~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~~~~~~~~t~e 413 (429)
T 4e77_A 339 RHAAKEENI----PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLM-LEEGVYLAPSAFEAGFMSLAHSNE 413 (429)
T ss_dssp HHHHHHTTC----CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHH-HHTTEECCSSTTSCEECCTTCCHH
T ss_pred HHHHHhCCC----ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHH-HHCCeEEeecCCCCEEEeccCCHH
Confidence 333334443 222233455666543 1 3344555 45799999986 55442 23889
Q ss_pred cHHHHHHHHHHHHHh
Q 013839 408 NVNYLANAIHEVTRS 422 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~ 422 (435)
++++++++|++++++
T Consensus 414 ~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 414 DIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-24 Score=207.50 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=192.9
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~ 166 (435)
..+..+|++++++++... +.++ +.+|++|+.++ +. ++.+||+|++++|+|.+.... ++..|++
T Consensus 66 ~p~~~~l~~~la~~~g~~-------~~i~---~~sG~~ai~~~--~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 66 NPTRNCLEKAVAALDGAK-------YCLA---FASGLAATVTI--TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp CHHHHHHHHHHHHHHTCS-------EEEE---ESCHHHHHHHH--HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred CchHHHHHHHHHHHhCCC-------cEEE---ECCHHHHHHHH--HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence 356789999999998332 2344 56667888887 55 788999999999999875543 3567888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-ceeeeeccCCCccCCCC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG-HFPFFDMAYQGFASGDL 245 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~vi~Deay~~~~~~~~ 245 (435)
++.++.. |+++++++++ ++++++++++|+||||.+++ +++|.++|++|| +++|+|++|..+.+..
T Consensus 133 v~~v~~~-------d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~- 198 (403)
T 3cog_A 133 ISFVDCS-------KIKLLEAAIT---PETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR- 198 (403)
T ss_dssp EEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC-
T ss_pred EEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC-
Confidence 8888751 7899999987 67899999999999999996 679999999999 9999999998765431
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + .+.++++.|+||.++.+|. |+||++ +++++ +++.++..........+.+.+.++...++.
T Consensus 199 -----~~----~-~~~div~~S~sK~~~g~~~~~~G~v~--~~~~~----l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 199 -----PL----A-LGADISMYSATKYMNGHSDVVMGLVS--VNCES----LHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp -----TT----T-TTCSEEEEETTTTTTCSSCCCCEEEE--ECCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred -----cc----c-cCCeEEEEcChhhccCCCCCeEEEEE--ECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 11 1 2467999999999987764 799996 43467 777776655444455677777777777764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------CC--CCcccccc----CcceeEecCC--CHHHHHHHhh
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG---------SS--LNWEHITN----QLGMFCFSGL--TPYQVDRLAK 387 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~--~~~~~~~~----~~g~~~~~~~--~~~~~~~ll~ 387 (435)
.. ...++..++...+.+.+++.+ ++ .++.+..+ .++++.|. + ..+.+.++++
T Consensus 263 l~----------~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~-l~~~~~~~~~~l~ 331 (403)
T 3cog_A 263 LH----------VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFY-IKGTLQHAEIFLK 331 (403)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEE-ESSCHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEE-ecCCHHHHHHHHH
Confidence 31 222333444444455554431 00 01333333 37777774 3 3355666777
Q ss_pred hccEEEe-------------C----------------C---C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 388 EFHIYMT-------------Q----------------D---G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 388 ~~gI~i~-------------p----------------g---g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.||.+. | | + |+|++. ++.+.+++.|.+++++..+
T Consensus 332 ~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL---EDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHCC
T ss_pred hCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHHHhhc
Confidence 7787432 1 1 2 999854 6677788888888775543
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=204.15 Aligned_cols=287 Identities=14% Similarity=0.070 Sum_probs=181.8
Q ss_pred eeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 54 NLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 54 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
..+++.| +.....+..+.+.++.....+. ..+.|. +.....++++.+++++ +. + +.+ ++.+|++|+
T Consensus 25 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~-g~------~-~~i--~~~sG~~a~ 93 (398)
T 1gc0_A 25 GGALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLE-GG------E-AGL--ALASGMGAI 93 (398)
T ss_dssp TTBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHH-TC------S-EEE--EESSHHHHH
T ss_pred CCCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHh-CC------C-cEE--EECCHHHHH
Confidence 3455665 4444445555555444322211 122233 4456778999999987 32 1 233 577888999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 131 RLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 131 ~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
.++ +..++.+||+|+++.|+|.++...+ ...|++++.++. .|+++++++++ ++++++++++|+|
T Consensus 94 ~~~--l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n 161 (398)
T 1gc0_A 94 TST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMT---PATRVIYFESPAN 161 (398)
T ss_dssp HHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCT
T ss_pred HHH--HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCC
Confidence 888 6667889999999999999887765 567888877764 27899999997 6789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~ 285 (435)
|||.+.+ +++|.++|++||+++|+|++|..+.+.. ++ . .+.++++.|+||.++.+|+|+ ||+++
T Consensus 162 ptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~----~-~~~d~~~~S~sK~~~~~~~~~~G~l~~- 226 (398)
T 1gc0_A 162 PNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------PL----E-LGADLVVHSATKYLSGHGDITAGIVVG- 226 (398)
T ss_dssp TTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------GG----G-GTCSEEEEETTTTTTCSSSCCCEEEEE-
T ss_pred CCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCceEEEECCccccCCCCCCeEEEEEE-
Confidence 9999985 6799999999999999999987554321 11 1 245789999999999999998 88863
Q ss_pred ecChhHHHHHHH-HHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----
Q 013839 286 CVDSKQAAAIRS-QIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS----- 358 (435)
Q Consensus 286 ~~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----- 358 (435)
+++ .+. .++..... .....+.+.+.++...++.. ....++..++.+.+.+.|++++.
T Consensus 227 --~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~L~~~~~v~~v~ 290 (398)
T 1gc0_A 227 --SQA----LVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL----------NLRMDRHCANAQVLAEFLARQPQVELIH 290 (398)
T ss_dssp --CHH----HHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred --ChH----HHHHHHHHHhhccCCCCCCHHHHHHHHhccchH----------HHHHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 666 443 34443333 33456677777666666432 23344555566666667765431
Q ss_pred -C-----CCccccc----cCcceeEecCCC--HHHHHHHhhhccEEEeC
Q 013839 359 -S-----LNWEHIT----NQLGMFCFSGLT--PYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 359 -~-----~~~~~~~----~~~g~~~~~~~~--~~~~~~ll~~~gI~i~p 395 (435)
+ ..+.... ..++++.| .+. .+.+..++++.+|.+..
T Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 291 YPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp EC----------------CCTTEEEE-EETTHHHHHHHHHHHCSSSEEC
T ss_pred CCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHHHhCCCceec
Confidence 0 0011111 24555554 342 34566777777776643
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=208.47 Aligned_cols=308 Identities=13% Similarity=-0.002 Sum_probs=199.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCC-CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESI-SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++++|+.|.| ..++...+.+...+..+ .|. +..+..++++++++++... +++ ++.||++
T Consensus 22 ~~~~~l~~~~p------~~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i--~~~~gt~ 82 (391)
T 3dr4_A 22 SDLPRISVAAP------RLDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCGVK--------HAI--ACNNGTT 82 (391)
T ss_dssp ------CCCCC------CCCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHTCS--------EEE--EESSHHH
T ss_pred CCCceeccCCC------CCCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhCCC--------cEE--EeCCHHH
Confidence 57888999886 22333434333333322 355 6788999999999998322 344 7999999
Q ss_pred HHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++++ ++||
T Consensus 83 al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~---~~~~~v~---~~n~ 153 (391)
T 3dr4_A 83 ALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDN-DPRTFNLDAAKLEALIT---PRTKAIM---PVHL 153 (391)
T ss_dssp HHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCGGGSGGGCC---TTEEEEC---CBCG
T ss_pred HHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEec-CccccCcCHHHHHHhcC---CCceEEE---EECC
Confidence 99888 6666 789999999999999999999999999999998 45678999999999887 5777776 4789
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc-CCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEE
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA-SGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSI 284 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~ 284 (435)
||...+ +++|.++|++||+++|+|++|.... +.+. . ..... .+.+.||| |.++ |.+.|+++
T Consensus 154 tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-----~---~~~~~--di~~~S~s~~K~l~--~g~gg~~~- 217 (391)
T 3dr4_A 154 YGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK-----K---SGSLG--DCATFSFFGNAIIT--TGEGGMIT- 217 (391)
T ss_dssp GGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-----E---TTSSS--SEEEEECBTTSSSC--CBSCEEEE-
T ss_pred CCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe-----e---ecccC--CEEEEECCCCCcCC--cCCeEEEE-
Confidence 998765 6689999999999999999987533 2210 0 11111 36677766 7664 46678885
Q ss_pred EecChhHHHHHHHHHHHHhhccc--------------cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMY--------------GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+.+++ +.+.++....... ...+.+ .++...... +.+++..++.+++++.+.
T Consensus 218 -~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l--~aa~~~~~~--------~~~~~~~~~~~~~~~~l~ 282 (391)
T 3dr4_A 218 -TNDDD----LAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNI--QAAIGLAQL--------ERVDEHLAARERVVGWYE 282 (391)
T ss_dssp -ESCHH----HHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHH--HHHHHHHHH--------HTHHHHHHHHHHHHHHHH
T ss_pred -ECCHH----HHHHHHHHHhcCCCCCCcccccccccccCCCHH--HHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 44566 5555554432111 122222 122111111 334556677777788888
Q ss_pred HHHHhhCCCCCcccccc------Cccee-Eec------CCCHHHHHHHhhhccEEEeCCC--------------------
Q 013839 351 QNLEKLGSSLNWEHITN------QLGMF-CFS------GLTPYQVDRLAKEFHIYMTQDG-------------------- 397 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~------~~g~~-~~~------~~~~~~~~~ll~~~gI~i~pgg-------------------- 397 (435)
+.|++++. ....+ ..+++ .++ +.+.+.+.+.|.++||.+.++.
T Consensus 283 ~~L~~~g~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~ 358 (391)
T 3dr4_A 283 QKLARLGN----RVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIA 358 (391)
T ss_dssp HHHGGGTT----SEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHH
T ss_pred HHhhcCCc----cccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHH
Confidence 88887753 22222 12222 222 2345666555567899998761
Q ss_pred --------cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 398 --------RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 398 --------Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
|+++. ..+++++++++++|++++
T Consensus 359 ~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 359 EACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 55543 347899999999987653
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=202.20 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=194.8
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCC
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQI 165 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 165 (435)
+..+..++++++++++... +.+. +.+|++|+.++ +..++.+||+|+++.|+|.+.... ++..|+
T Consensus 50 ~~~~~~~l~~~la~~~~~~-------~~i~---~~sGt~a~~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGGA-------GAVL---TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CCHHHHHHHHHHHHHHTCS-------EEEE---ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCccHHHHHHHHHHHhCCC-------cEEE---eCCHHHHHHHH--HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 3466789999999998332 2444 56669999888 666678999999999999875443 356788
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. .|++++++.++ ++++++++++|+||||.+++ +++|.++|++||+++|+||+|..+....
T Consensus 118 ~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 118 RVLFVDQ-------GDEQALRAALA---EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp EEEEECT-------TCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EEEEeCC-------CCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 8877764 28899999998 57789999999999999986 6799999999999999999998776531
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
+. . .+.++++.|+||.++.+|.|+ ||++ +++++ +++.+.........+.+.+.+.++...+..
T Consensus 184 -----~~----~-~~~di~~~s~sK~~~~~~~~~~G~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (386)
T 1cs1_A 184 -----PL----A-LGADLVLHSCTKYLNGHSDVVAGVVI--AKDPD----VVTELAWWANNIGVTGGAFDSYLLLRGLRT 247 (386)
T ss_dssp -----GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE--ESSHH----HHHHHHHHHHHHTCBCCHHHHHHHHHHHTT
T ss_pred -----cc----c-cCceEEEEcCcccccCCCCceeEEEE--eCcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhcccH
Confidence 11 1 246789999999999899997 8986 43347 666666655443445677776666555542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CC-----Ccccc----ccCcceeEec-CCCHHHHHHHhhh
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS------SL-----NWEHI----TNQLGMFCFS-GLTPYQVDRLAKE 388 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~----~~~~g~~~~~-~~~~~~~~~ll~~ 388 (435)
+....++..++++.+.+.|++++. +. .+.+. ...++++.|. .-..+.+...+++
T Consensus 248 ----------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (386)
T 1cs1_A 248 ----------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGG 317 (386)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHh
Confidence 233344556666677777765431 10 00111 1225555443 1124566666778
Q ss_pred ccEEEeC---C-----------------------------C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 389 FHIYMTQ---D-----------------------------G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 389 ~gI~i~p---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.||.+.+ | + |+|++. ++.++.+++|.+++++..
T Consensus 318 ~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHT
T ss_pred CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHhh
Confidence 8998873 2 2 888754 677888888888876543
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=202.50 Aligned_cols=274 Identities=14% Similarity=0.066 Sum_probs=193.2
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~ 166 (435)
.....++++.+++++. .. +.+ ++.+|++|+.++ +..++.+||+|+++.|+|.++... ++..|++
T Consensus 58 ~~~~~~l~~~la~~~g-~~-------~~i--~~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 125 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEG-AA-------GSA--AFGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIE 125 (389)
T ss_dssp CHHHHHHHHHHHHHHT-CS-------EEE--EESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHHhC-CC-------eEE--EeCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 4456789999999983 21 233 578888998888 666688999999999999987665 5778988
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .|+++++++++ ++++++++++|+||||.+.+ +++|.++|++||+++|+|++|..+....
T Consensus 126 ~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-- 190 (389)
T 3acz_A 126 VDLIDT-------SDVEKVKAAWK---PNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-- 190 (389)
T ss_dssp EEEECT-------TCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC--
Confidence 888865 37899999887 67899999999999999986 6799999999999999999997665421
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecCh-hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDS-KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + .+.++++.|+||.++.+|.|+ ||+++ ++ + +++.++........+.+...+.++...++.
T Consensus 191 ----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v~~---~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 254 (389)
T 3acz_A 191 ----PL----E-LGADIALHSVSKYINGHGDVIGGVSSA---KTAE----DIATIKFYRKDAGSLMAPMDAFLCARGMKT 254 (389)
T ss_dssp ----GG----G-TTCSEEEEETTTTTTCSSCCCCEEEEE---SSHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred ----cc----c-cCCeEEEECChhhccCCCCceeEEEEE---CcHH----HHHHHHHHHHhcCCCCCHHHHHHHHcCccH
Confidence 11 1 246789999999999999998 99864 55 7 777776655433445566666666666653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CC-----Cccccc----cCcceeEecCC-CHHHHHHHhhh
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS------SL-----NWEHIT----NQLGMFCFSGL-TPYQVDRLAKE 388 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~g~~~~~~~-~~~~~~~ll~~ 388 (435)
. ....++..++.+.+.+.|++++. +. .+.... ..++++.+ .+ ..+.+.+++++
T Consensus 255 l----------~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~-~l~~~~~~~~~l~~ 323 (389)
T 3acz_A 255 L----------PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF-EMKSFEAAKKLMEH 323 (389)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EESSHHHHHHHHTT
T ss_pred H----------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE-EECCHHHHHHHHHh
Confidence 2 22233444555666666665421 00 111111 12454443 23 25667777777
Q ss_pred ccEEEeC---C-----------------------------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 389 FHIYMTQ---D-----------------------------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 389 ~gI~i~p---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.||.+.+ | + |+|++. ++.+.+++.|.++++
T Consensus 324 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp CSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred CCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 8877655 2 2 788744 688889999988875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=207.48 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=179.4
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCC--eeeeeecC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIP--ERTYHYYD 174 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~--~~~v~~~~ 174 (435)
.+++++ +.. +++|. + .+|++|+.++ +.+++.+||+|++++|+|..+.. .+...|.. ++.++.
T Consensus 79 ~la~~~-g~~-----~~~i~--~-~sGt~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 145 (417)
T 3n0l_A 79 RCKKLF-NCK-----FANVQ--P-NSGSQANQGV--YAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV-- 145 (417)
T ss_dssp HHHHHH-TCS-----EEECC--C-SSHHHHHHHH--HHHHSCTTCEEEEECC----------------CCSEEEEECC--
T ss_pred HHHHHh-CCC-----CcceE--e-ccHHHHHHHH--HHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC--
Confidence 555555 332 34565 4 4558999888 67778999999999999977644 33344444 444554
Q ss_pred CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHH
Q 013839 175 PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIR 253 (435)
Q Consensus 175 ~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~ 253 (435)
++++.+|+++|++++.+ ++++++++++|+| |...+ +++|.++|++||+++|+|+++ .++.+.+.. .
T Consensus 146 ~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~---- 212 (417)
T 3n0l_A 146 ELDGRIDYEKVREIAKK--EKPKLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEH--P---- 212 (417)
T ss_dssp CTTSSCCHHHHHHHHHH--HCCSEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--C----
T ss_pred CCCCCcCHHHHHHHHHh--cCCeEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccC--C----
Confidence 35678999999999973 2567888888886 66666 679999999999999999995 222222110 0
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWI 332 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~ 332 (435)
......++++.|+||.+ +|+|+||++ +++++ +++.+....... ..+++...+.++..++... +.
T Consensus 213 --~~~~~~di~~~s~sK~l--~g~~~G~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~-----~~ 277 (417)
T 3n0l_A 213 --SPFPYAHVVSSTTHKTL--RGPRGGIIM--TNDEE----LAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN-----LS 277 (417)
T ss_dssp --CCTTTCSEEEEESSTTT--CSCSCEEEE--ESCHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH-----TS
T ss_pred --CccccceEEEeeCcccc--CCCCeeEEE--ECCHH----HHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH-----Hh
Confidence 01113468899999987 788999996 43367 777776654432 2334444444444444321 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecC-----CCHHHHHHHhhhccEEEeCCC---------
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSG-----LTPYQVDRLAKEFHIYMTQDG--------- 397 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~pgg--------- 397 (435)
+..+++++++.++++.+.+.|++.+. .... +..+.++|+. ++.+.+.++++++||.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~ 353 (417)
T 3n0l_A 278 DEWKVYAKQVRTNAQVLANVLMDRKF----KLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPF 353 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCc----eeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccC
Confidence 44577888888899999999988653 3333 2334466653 356777777788999997431
Q ss_pred -----cEEecc-----CCCCcHHHHHHHHHHHHHhh
Q 013839 398 -----RISMAG-----VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 -----Ris~~~-----~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+++.. .+++++++++++|++++++.
T Consensus 354 ~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 354 ITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 776532 35799999999999998754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=214.14 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=211.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHH-H-HHHH---HhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeee
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCV-R-EAEA---KIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAG 120 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~ 120 (435)
++...+|+..|.+...-|+ .++.++ + ++.+ ++..... ..|. .....++++.+++++... .++++.
T Consensus 52 ~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~la~~la~~~~~~-----~~~~v~- 123 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGM-NPPALVDDREFHAELMQAALNKPSNSDVY-SVAMARFVETFARVLGDP-----ALPHLF- 123 (449)
T ss_dssp TCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHHTCCCCTTTCC-CHHHHHHHHHHHHHHCCT-----TCCEEE-
T ss_pred CCcEEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCcccC-CHHHHHHHHHHHHhcCCC-----CCCEEE-
Confidence 4567889888764222221 133343 3 4444 4443211 1132 233467777777776311 156788
Q ss_pred EecCCchhHHHHHHHHHH-HhC----------C-CCEEEEcCCCChhhHHHHhh-CC--------C-----CeeeeeecC
Q 013839 121 VQALSGTGACRLFAEFQR-RFH----------P-ESHIYFPDPTWSNHHNIWRD-AQ--------I-----PERTYHYYD 174 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~-~~~----------~-gd~Vlv~~p~y~~~~~~~~~-~g--------~-----~~~~v~~~~ 174 (435)
+++||++|+.++..+.. ... + ||+|++.+|+|.++...... .| . +++.+|..+
T Consensus 124 -~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 202 (449)
T 2cjg_A 124 -FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMR 202 (449)
T ss_dssp -EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred -EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCC
Confidence 99999999999854332 122 2 89999999999876442221 11 1 344555422
Q ss_pred --CCC------CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 175 --PDS------KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 175 --~~~------~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
.+. ...++++|++.+.+..+++++|+++.++||||. ..+++++++|.++|++||+++|+||+|.+++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~ 282 (449)
T 2cjg_A 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT 282 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred chhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc
Confidence 110 024566788888643356788887777899995 88999999999999999999999999998876532
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH-----HHhhccccCCChhHHHHHHH
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ-----QIARAMYGSPPVHGILLVAT 320 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~q~~~~~ 320 (435)
.+....+ +...++ .|+||.+ |+||+++ +++ +++.+. ......+.+.+.+++.++.+
T Consensus 283 ---~~~~~~~-~~~~di---~t~sK~l-----~iG~~~~---~~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~a 343 (449)
T 2cjg_A 283 ---AWAYQQL-DVAPDI---VAFGKKT-----QVCGVMA---GRR----VDEVADNVFAVPSRLNSTWGGNLTDMVRARR 343 (449)
T ss_dssp ---SSTHHHH-TCCCSE---EEECGGG-----SSEEEEE---CGG----GGGSTTCTTTSTTSSCCSSSSCHHHHHHHHH
T ss_pred ---ceeeccc-CCCceE---EEecCcc-----cEEEEEE---CHH----HhhhhhhcccCCcccccCCCCCHHHHHHHHH
Confidence 1112111 222233 3789987 7999974 677 665421 11223456778888888888
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC-----HHHHHHHhhhccEEE
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT-----PYQVDRLAKEFHIYM 393 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~-----~~~~~~ll~~~gI~i 393 (435)
+|+... + +...++++++++++.+.|+++. .+..+....+.+. |+++.+. .+++..++ ++||.+
T Consensus 344 al~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~-~~Gv~v 413 (449)
T 2cjg_A 344 ILEVIE------A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAFSLPTTADRDELIRQLW-QRAVIV 413 (449)
T ss_dssp HHHHHH------H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEEECSSHHHHHHHHHHHH-HTTEEC
T ss_pred HHHHHH------h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEEEECChHHHHHHHHHHH-HCCeEE
Confidence 875321 1 2455677778888888887652 2211223445555 5555552 23446665 589999
Q ss_pred eCCC----cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 394 TQDG----RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 394 ~pgg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|+| ||+++. .+++++++++++|+++++++
T Consensus 414 ~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9875 886532 38999999999999988653
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-25 Score=211.22 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=176.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCC--cChHhHHHHhhcCCCCcE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKS--LDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~--~d~e~l~~~i~~~~~~~~ 197 (435)
+|+||++++.++ +.+++.|||+|+++++.+..+ ...++..| +++.++...+++++ +|.++++ ++ ++++
T Consensus 73 ~t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~ 144 (362)
T 2c0r_A 73 IQGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ---DNAA 144 (362)
T ss_dssp ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---TTEE
T ss_pred ECCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---CCcC
Confidence 679999999988 777789999999887764443 35667789 99999873112233 4666553 44 6789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~ 277 (435)
++++++|+||||..++ ++++| +|+++|+|++|..+... . + +.+ ..+++.|+||.+|++|
T Consensus 145 ~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~-~-----~---~~~---~d~~~~s~~K~~g~~G- 203 (362)
T 2c0r_A 145 YLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP-F-----D---LNQ---FGLVYAGAQKNLGPSG- 203 (362)
T ss_dssp EEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC-C-----C---GGG---CSEEEEETTTTTCCSS-
T ss_pred EEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc-c-----c---hhH---CcEEEEeccccccCcC-
Confidence 9999999999999754 34454 89999999998755422 1 1 111 2477889999999888
Q ss_pred cccEEEEEecChhHHHHHHHHHHHH------------hhccccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHH
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQI------------ARAMYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQR 344 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~ 344 (435)
+||+++ +++ +++.+.+. ......+++.+.|.++..+|+... .. .+++.++++++
T Consensus 204 -~G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~ 270 (362)
T 2c0r_A 204 -VTVVIV---RED----LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-----ERGGLEGVQQANRK 270 (362)
T ss_dssp -CEEEEE---EGG----GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHH
T ss_pred -cEEEEE---cHH----HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHH
Confidence 899974 666 44433221 112335677888888888875321 12 56888899999
Q ss_pred HHHHHHHHHHhhC-CCCCccccc---cCcceeEecCC----CHHHHHHHhhhccEEEeCC----C--cEEeccC-CCCcH
Q 013839 345 KRTTLRQNLEKLG-SSLNWEHIT---NQLGMFCFSGL----TPYQVDRLAKEFHIYMTQD----G--RISMAGV-TTGNV 409 (435)
Q Consensus 345 ~~~~l~~~l~~~~-~~~~~~~~~---~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pg----g--Ris~~~~-~~e~i 409 (435)
+++++.+.|++++ . +.... ..++.++++.+ +.+.+.+.|+++||.+.+| + |+|++.. +++++
T Consensus 271 ~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i 347 (362)
T 2c0r_A 271 KASLIYDAIDQSGGF---YRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESC 347 (362)
T ss_dssp HHHHHHHHHHTSTTS---SEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHcCCc---cccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHH
Confidence 9999999999886 2 12211 12334455544 2334444456789988876 2 9998642 67899
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|++++++
T Consensus 348 ~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 348 EALVQFMEHFKRS 360 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=211.57 Aligned_cols=340 Identities=13% Similarity=0.062 Sum_probs=206.1
Q ss_pred CCCCeeeeeccee-cCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAY-RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.+.++|..|.+ .|......++.+.+++...+..+ ...|.+..+..+|++++++++ +. +++. +|+||
T Consensus 30 ~g~~~~~~~~~~~ylD~~~~~~~~~v~~a~~~~l~~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~v~--~t~~g 98 (467)
T 2oqx_A 30 SGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRG-DEAYSGSRSYYALAESVKNIF-GY-------QYTI--PTHQG 98 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCCSSCSCCCHHHHHHTTSC-CCCSSSCHHHHHHHHHHHHHH-CC-------SEEE--EEC--
T ss_pred cCCCceeccCCCeeEecccCCCcHHHHHHHHHHhccC-cceeccCchhHHHHHHHHHHh-Cc-------CcEE--EcCCc
Confidence 4566788888753 22211112234444444554444 346888888999999999998 32 2566 89999
Q ss_pred hhHHHHHHHHHHHhCC-----C----CEEEEcCCCChhhHHHHhhCCCCeeee------eec--CCCCCCcChHhHHHHh
Q 013839 127 TGACRLFAEFQRRFHP-----E----SHIYFPDPTWSNHHNIWRDAQIPERTY------HYY--DPDSKSLDFAALMDDI 189 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~v------~~~--~~~~~~~d~e~l~~~i 189 (435)
++|+.++ +..++.+ | |+|++..+.|..+.......|+.++.. +.. .+.++.+|+++|++++
T Consensus 99 t~A~~~a--l~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i 176 (467)
T 2oqx_A 99 RGAEQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176 (467)
T ss_dssp CCSHHHH--HHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHH--HHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence 9999888 5555567 8 998877544455555555556554432 110 0134568999999999
Q ss_pred hcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC----------ccCCCCcccHHHHH-Hhh
Q 013839 190 KNAP-DSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG----------FASGDLDKDAQAIR-IFL 256 (435)
Q Consensus 190 ~~~~-~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~----------~~~~~~~~~~~~~~-~~~ 256 (435)
++.. +++++|++++|+||| |.+++.+++++|.++|++||+++|+|+++.. ..+.+. +...+. ...
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~~~ 254 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRETY 254 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHHHG
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhhhh
Confidence 7421 367899999999998 9999999999999999999999999965321 122221 122221 000
Q ss_pred hcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhh--cc---ccCCChhHHHHHHHHhCChhhHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIAR--AM---YGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~--~~---~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
...+ +++.|+||.+|++ | ||++ ++++...+ ....++.... .. ....+.....++...+.
T Consensus 255 ~~~d--~~~~s~sK~~g~~~G---g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------- 319 (467)
T 2oqx_A 255 KYAD--MLAMSAKKDAMVPMG---GLLC--MKDDSFFD-VYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------- 319 (467)
T ss_dssp GGCS--EEEEESSSTTCCSSC---EEEE--ECSGGGHH-HHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH-------
T ss_pred ccCC--eEEEecccccCCCCc---eEEE--ecChhHHH-HHHHHHHhhhccCCcccccchhhhHHHHHHHhhH-------
Confidence 1122 4578999999866 4 6664 43340111 3333443221 10 11122221111111111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------C-----HHH-HHHHhhhccEEEeC-
Q 013839 331 WIDEV-KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------T-----PYQ-VDRLAKEFHIYMTQ- 395 (435)
Q Consensus 331 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~-----~~~-~~~ll~~~gI~i~p- 395 (435)
+.+ +...++..++++.+.+.|++++ +.+. +.+++++|+.+ + .+. +..+++++||.+.|
T Consensus 320 --~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~ 392 (467)
T 2oqx_A 320 --DGMNLDWLAYRIAQVQYLVDGLEEIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEI 392 (467)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHHHHTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEE
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccc
Confidence 111 1233445667788888888875 3445 66777887644 2 112 45554778999976
Q ss_pred C------------------C--cEEecc--CCCCcHHHHHHHHHHHHHhhh
Q 013839 396 D------------------G--RISMAG--VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 396 g------------------g--Ris~~~--~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ + ||+++. .+++++++++++|++++++..
T Consensus 393 ~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 393 GSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp SHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred ccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 2 3 888862 478999999999999987644
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=202.07 Aligned_cols=303 Identities=15% Similarity=0.098 Sum_probs=197.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcc----cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCC
Q 013839 69 VLQCVREAEAKIAGSEFLESISASV----STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPE 143 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~g 143 (435)
++...+.+.+.+..+....|++..| ..++++.+++++ +.. +.+ ++.+|++|+.++ +.++ +.+|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~~-------~~i--~~~~gt~al~~~--~~~~~~~~g 82 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN-GVP-------YCV--PTTSGSTALMLA--LEALGIGEG 82 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCS-------EEE--EESCHHHHHHHH--HHHTTCCTT
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh-CCC-------cEE--EeCCHHHHHHHH--HHHcCCCCc
Confidence 3444444444443332223777777 566777777766 331 233 688889999888 6666 7899
Q ss_pred CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 013839 144 SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQ 223 (435)
Q Consensus 144 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~ 223 (435)
|+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++|++ +||||.. .++++|.++
T Consensus 83 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~~---~~~~G~~---~~~~~i~~~ 152 (418)
T 2c81_A 83 DEVIVPSLTWIATATAVLNVNALPVFVDV-EADTYCIDPQLIKSAIT---DKTKAIIP---VHLFGSM---ANMDEINEI 152 (418)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHGGGCC---TTEEEECC---BCCTTCC---CCHHHHHHH
T ss_pred CEEEECCCccHhHHHHHHHcCCEEEEEec-CCCCCCcCHHHHHHhhC---CCCeEEEE---eCCcCCc---ccHHHHHHH
Confidence 99999999999999999999999999988 34468899999999987 56788876 5699976 457799999
Q ss_pred HHhcCceeeeeccCCCcc-CCCCcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEecChhHHHHHHHHHH
Q 013839 224 FKVKGHFPFFDMAYQGFA-SGDLDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ 300 (435)
Q Consensus 224 ~~~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~ 300 (435)
|++||+++|+|++|..+. +++ .. +.... .+.+.|| ||.++. | |+||++ +++++ +++.++
T Consensus 153 ~~~~~~~li~D~a~~~~~~~~~--~~------~~~~~--~~~~~s~s~~K~~~~-g-~~g~~~--~~~~~----l~~~~~ 214 (418)
T 2c81_A 153 AQEHNLFVIEDCAQSHGSVWNN--QR------AGTIG--DIGAFSCQQGKVLTA-G-EGGIIV--TKNPR----LFELIQ 214 (418)
T ss_dssp HHHTTCEEEEECTTCTTCEETT--EE------TTSSS--SEEEEECCTTSSSCS-S-SCEEEE--ESCHH----HHHHHH
T ss_pred HHHCCCEEEEECcccccCccCC--Ee------ccccc--ceEEEeccCCcccCC-C-CeEEEE--ECCHH----HHHHHH
Confidence 999999999999998776 432 11 11112 2666777 999996 8 999996 43466 666665
Q ss_pred HHhhccc------------cC-----CC--------hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 301 QIARAMY------------GS-----PP--------VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 301 ~~~~~~~------------~~-----~~--------~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
....... .. +. ...+.++. +. . .+.+++..++.+++++++.+.|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~--~-----l~~~~~~~~~~~~~~~~l~~~L~~ 285 (418)
T 2c81_A 215 QLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LD--Q-----LQELDDKNAIREKNAMFLNDALSK 285 (418)
T ss_dssp HHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HH--H-----HTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHH--HH--H-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5332211 00 00 01111111 10 0 122445566666777888888877
Q ss_pred hCCCCCcccc-ccCc----ceeEe-c--------CCCHHHHHHHhhhc-cEE---EeCC---------------------
Q 013839 356 LGSSLNWEHI-TNQL----GMFCF-S--------GLTPYQVDRLAKEF-HIY---MTQD--------------------- 396 (435)
Q Consensus 356 ~~~~~~~~~~-~~~~----g~~~~-~--------~~~~~~~~~ll~~~-gI~---i~pg--------------------- 396 (435)
++. +.+. .+++ .++++ + +.+.+.+.+.|.++ ||. +.++
T Consensus 286 ~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~ 362 (418)
T 2c81_A 286 IDG---IKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKS 362 (418)
T ss_dssp STT---EEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHH
T ss_pred CCC---cccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccc
Confidence 631 4444 3444 22121 2 24555554444456 999 7542
Q ss_pred ---------------------C--cEEec-cC-CCCcHHHHHHHHHHHHHhh
Q 013839 397 ---------------------G--RISMA-GV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 ---------------------g--Ris~~-~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+ |+++. .. +++++++++++|+++++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 363 VRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 77764 34 7899999999999988654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=200.94 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=163.0
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~ 166 (435)
.....++++.+++++... +++ +++||++|+.++ +..++.+||+|+++.|+|.++...+ +..|.+
T Consensus 65 ~~~~~~l~~~la~~~g~~--------~~~--~~~sGt~A~~~a--l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~ 132 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAA--------FGR--AFSSGMAAADCA--LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132 (392)
T ss_dssp CHHHHHHHHHHHHHTTCS--------EEE--EESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred ChHHHHHHHHHHHHhCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence 345678999999987322 344 789999999888 6667889999999999998877665 667888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .|++++++++. ++++++++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 133 ~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~-- 197 (392)
T 3qhx_A 133 YTPVAL-------ADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ-- 197 (392)
T ss_dssp EEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEeCC-------CCHHHHHHhhC---CCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 888865 18899999997 68899999999999999876 6799999999999999999987543221
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
+. + ...++++.|+||.++.+| .|+||++ +++++ +.+.+...........+.+.+.++...++.-
T Consensus 198 ----~~----~-~~~di~~~S~sK~lg~~g~~~~G~v~--~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l 262 (392)
T 3qhx_A 198 ----PL----S-LGADVVLHSTTKYIGGHSDVVGGALV--TNDEE----LDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL 262 (392)
T ss_dssp ----GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE--ESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred ----hH----H-hCCcEEEEcCccccCCCCCceEEEEE--ECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence 11 1 135688999999999777 7899996 43467 7777776655555667777777776666542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
....++..++++.+.+.|++.+
T Consensus 263 ----------~~~~~~~~~~~~~l~~~L~~~~ 284 (392)
T 3qhx_A 263 ----------VLRMQRHSENAAAVAEFLAEHP 284 (392)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCC
Confidence 2334556666777777777653
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=203.15 Aligned_cols=281 Identities=15% Similarity=0.089 Sum_probs=191.6
Q ss_pred CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCC
Q 013839 87 ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQI 165 (435)
Q Consensus 87 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~ 165 (435)
.|.+..+..++++++++++... +++ +++||++|+.++ +..+ +.+||+|+++.|+|..+...++..|+
T Consensus 30 ~~~~~~~~~~l~~~la~~~~~~--------~~~--~~~sGt~al~~a--l~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~ 97 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVGAK--------YCI--SCANGTDALQIV--QMALGVGPGDEVITPGFTYVATAETVALLGA 97 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred CccCChHHHHHHHHHHHHhCCC--------cEE--EeCCHHHHHHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHcCC
Confidence 3556678899999999998322 444 799999999888 6666 78999999999999999999999999
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCc-cCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF-ASGD 244 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~-~~~~ 244 (435)
+++.++. +++++.+|+++++++++ +++++|+ |+||||... ++++|.++|++||+++|+|++|... .+.+
T Consensus 98 ~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~---~~~~~G~~~---~~~~i~~la~~~~~~li~D~a~~~g~~~~~ 167 (367)
T 3nyt_A 98 KPVYVDI-DPRTYNLDPQLLEAAIT---PRTKAII---PVSLYGQCA---DFDAINAIASKYGIPVIEDAAQSFGASYKG 167 (367)
T ss_dssp EEEEECB-CTTTCSBCGGGTGGGCC---TTEEEEC---CBCGGGCCC---CHHHHHHHHHHTTCCBEEECTTTTTCEETT
T ss_pred EEEEEec-CCccCCcCHHHHHHhcC---cCCcEEE---eeCCccChh---hHHHHHHHHHHcCCEEEEECccccCCeECC
Confidence 9999998 45568999999999986 6777776 689999655 4668999999999999999998643 2221
Q ss_pred CcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc------------cccCC
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA------------MYGSP 310 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~ 310 (435)
. . ....+ ++++.|| +|.++.+|. .|+++ +++++ +.+.++..... .....
T Consensus 168 ~-----~---~~~~~--di~~~Sf~~~K~l~~~g~-gg~~~--~~~~~----l~~~~~~~~~~g~~~~~~~~~~g~~~~~ 230 (367)
T 3nyt_A 168 K-----R---SCNLS--TVACTSFFPSAPLGCYGD-GGAIF--TNDDE----LATAIRQIARHGQDRRYHHIRVGVNSRL 230 (367)
T ss_dssp E-----E---TTSSS--SEEEEECCTTSSSCCSSC-CEEEE--ESCHH----HHHHHHHHTBTTEEETTEECSCCCBCCC
T ss_pred e-----e---ccCCC--CEEEEECCCCCcCCCcCc-eeEEE--eCCHH----HHHHHHHHHhcCCCcCceeeccCcCCCc
Confidence 0 0 11111 5778887 899986576 77875 54677 66666654321 12334
Q ss_pred ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--ccee-EecCC-CHHHHHHHh
Q 013839 311 PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMF-CFSGL-TPYQVDRLA 386 (435)
Q Consensus 311 ~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~-~~~~~-~~~~~~~ll 386 (435)
+.+.+.++...+. .+++..++.+++++.+.+.|++++.. +....+. .+++ ..+.. +.+.+.+.|
T Consensus 231 ~~~~aa~~~~~l~----------~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 298 (367)
T 3nyt_A 231 DTLQAAILLPKLE----------IFEEEIALRQKVAAEYDLSLKQVGIG--TPFIEVNNISVYAQYTVRMDNRESVQASL 298 (367)
T ss_dssp CHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCTTEECCCSSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCCee--ccCCCCCCceeeEEEEEEeCCHHHHHHHH
Confidence 4444433333332 23445566677778888888887531 1111111 1222 12222 566665566
Q ss_pred hhccEEEeCCC----------------------------cEEec-cCCCCcHHHHHHHHHH
Q 013839 387 KEFHIYMTQDG----------------------------RISMA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 387 ~~~gI~i~pgg----------------------------Ris~~-~~~~e~i~~~~~~l~~ 418 (435)
+++||.+.++. |+++. ..++++++++++.|++
T Consensus 299 ~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 299 KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 77899886431 55543 3477888888887754
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-22 Score=194.74 Aligned_cols=212 Identities=16% Similarity=0.108 Sum_probs=153.2
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~ 168 (435)
...++++.+++++.. ++.+ ++.+|++|+.++ +.+++.+||+|+++.|.|.+.... ++..|++++
T Consensus 115 ~~~~l~~~lA~l~g~-------~~~v---~~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~ 182 (445)
T 1qgn_A 115 TTVVLEEKISALEGA-------ESTL---LMASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 182 (445)
T ss_dssp HHHHHHHHHHHHHTC-------SEEE---EESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred HHHHHHHHHHHHhCC-------CcEE---EeCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 445899999998732 1233 466777998888 777789999999999999987664 456788888
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSS-FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~-~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
.++.. |+++++++++ +++ ++|++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 183 ~v~~~-------d~~~l~~ai~---~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~--- 246 (445)
T 1qgn_A 183 VIDPA-------DVGALELALN---QKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK--- 246 (445)
T ss_dssp EECSS-------CHHHHHHHHH---HSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---
T ss_pred EeCCC-------CHHHHHHHhc---cCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 88651 7899999998 567 99999999999999986 5699999999999999999986543221
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
+. + ...++++.|+||.+|..| .++||+++ +++ +++.+..........++.+..+++...++.
T Consensus 247 ---~~----~-~g~Div~~S~sK~~gg~gd~~~G~l~~---~~~----l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-- 309 (445)
T 1qgn_A 247 ---AL----A-LGADLVLHSATKFLGGHNDVLAGCISG---PLK----LVSEIRNLHHILGGALNPNAAYLIIRGMKT-- 309 (445)
T ss_dssp ---TT----T-TTCSEEEECTTTTTTCSSSCCCEEEEE---CHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHGGG--
T ss_pred ---cc----c-cCCEEEEECCcccccccccceEEEEEE---CHH----HHHHHHHHHHHhCCCCCHHHHHHHHHhHHH--
Confidence 11 1 235688999999998555 37899964 777 666666544433333455544444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....+++.++++.+.+.|++++
T Consensus 310 --------l~~r~~~~~~~a~~l~~~L~~~p 332 (445)
T 1qgn_A 310 --------LHLRVQQQNSTALRMAEILEAHP 332 (445)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 23344556666778888888764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=201.95 Aligned_cols=301 Identities=10% Similarity=-0.002 Sum_probs=201.5
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH---hCCCC
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR---FHPES 144 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~~gd 144 (435)
.++.+++.+.+.+... .|.+.....++++++++++ +.. ++. +++||++|+.++ +.++ +.+||
T Consensus 11 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~-~~~-------~v~--~~~ggt~al~~~--~~~~~~~~~~gd 75 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFL-GVK-------HAL--VFNSATSALLTL--YRNFSEFSADRN 75 (375)
T ss_dssp CCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHH-TCS-------EEE--EESCHHHHHHHH--HHHSSCCCTTSC
T ss_pred CCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHh-CCC-------eEE--EeCCHHHHHHHH--HHHhcccCCCCC
Confidence 3444444444444332 2445567889999999998 331 566 899999999988 6666 78999
Q ss_pred EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 013839 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQF 224 (435)
Q Consensus 145 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~ 224 (435)
+|+++.|+|..+...++..|++++.++. +++ +.+|+++|+++++ ++++++++++| ||...+ +++|.++|
T Consensus 76 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~---l~~i~~l~ 144 (375)
T 2fnu_A 76 EIITTPISFVATANMLLESGYTPVFAGI-KND-GNIDELALEKLIN---ERTKAIVSVDY---AGKSVE---VESVQKLC 144 (375)
T ss_dssp EEEECSSSCTHHHHHHHHTTCEEEECCB-CTT-SSBCGGGSGGGCC---TTEEEEEEECG---GGCCCC---HHHHHHHH
T ss_pred EEEECCCccHhHHHHHHHCCCEEEEecc-CCC-CCCCHHHHHhhcC---cCceEEEEeCC---cCCccC---HHHHHHHH
Confidence 9999999999999999999999999988 333 4799999999887 56788777554 999876 56999999
Q ss_pred HhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 225 KVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 225 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
++||+++|+|++|........ ..+...+ .+.+.|+| |.++. | +|++++ .++++ +++.+...
T Consensus 145 ~~~~~~li~D~a~~~~~~~~~-------~~~~~~~--~i~~~s~s~~K~~~~-g--~g~~~~-~~~~~----~~~~~~~~ 207 (375)
T 2fnu_A 145 KKHSLSFLSDSSHALGSEYQN-------KKVGGFA--LASVFSFHAIKPITT-A--EGGAVV-TNDSE----LHEKMKLF 207 (375)
T ss_dssp HHHTCEEEEECTTCTTCEETT-------EETTSSS--SEEEEECCTTSSSCC-S--SCEEEE-ESCHH----HHHHHHHH
T ss_pred HHcCCEEEEECccccCCeECC-------eeccccC--CeEEEeCCCCCCccc-c--CceEEE-eCCHH----HHHHHHHH
Confidence 999999999999865432110 0111111 47788888 99974 6 788863 33477 66666654
Q ss_pred hhccc------------c----CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 303 ARAMY------------G----SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 303 ~~~~~------------~----~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
..... . ..+.+. ++..+... +.+++..++.+++++++.+.|++++. +.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~ 274 (375)
T 2fnu_A 208 RSHGMLKKDFFEGEVKSIGHNFRLNEIQ---SALGLSQL-------KKAPFLMQKREEAALTYDRIFKDNPY---FTPLH 274 (375)
T ss_dssp TBTTEEESSSSCEEESSCCCBCCCCHHH---HHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHTTCSS---EEESG
T ss_pred HhcCCccccccccccccccccCCCCHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccC
Confidence 32111 1 222222 21222111 33456677788888999999988631 44433
Q ss_pred c----Ccc-eeEecC-----C-CHHHHHHHhhhccEEEeC----C-----------------------C--cEEecc-CC
Q 013839 367 N----QLG-MFCFSG-----L-TPYQVDRLAKEFHIYMTQ----D-----------------------G--RISMAG-VT 405 (435)
Q Consensus 367 ~----~~g-~~~~~~-----~-~~~~~~~ll~~~gI~i~p----g-----------------------g--Ris~~~-~~ 405 (435)
+ .++ ++.|+. . +.+.+.+.|.++||.+.. + + |+++.. .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 275 PLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp GGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred CCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 3 122 333432 2 444454444678999872 1 2 888753 37
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
++++++++++|++++++++
T Consensus 355 ~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999887653
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=208.60 Aligned_cols=267 Identities=17% Similarity=0.144 Sum_probs=171.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh---hHHHHhhCCCC--eeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN---HHNIWRDAQIP--ERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~---~~~~~~~~g~~--~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
++.||++|+.++ +.+++.+||+|++++|+|.. +.......|.. ++.++. +++++++|+++|++.+.+ +++
T Consensus 99 ~~~~Gs~a~~~a--l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~ 173 (425)
T 3ecd_A 99 QPHSGAQANGAV--MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV-SRDTMLIDYDQVEALAQQ--HKP 173 (425)
T ss_dssp CCSSHHHHHHHH--HHHHCCTTCEEEEECC------------------CEEEEECC-CTTTSSCCHHHHHHHHHH--HCC
T ss_pred ecCchHHHHHHH--HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCC-CcccCccCHHHHHHHHhh--cCC
Confidence 488999998887 66678899999999999987 32232344553 445554 345589999999999963 356
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++++|+||+. .++++|.++|++||+++|+||+| .++.+.+.. ... + . ...+++.|+||.+ +
T Consensus 174 ~~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~--~~~---~-~--~~di~~~s~sK~l--~ 238 (425)
T 3ecd_A 174 SLIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRH--ANP---V-E--HAHVVTSTTHKTL--R 238 (425)
T ss_dssp SEEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS--CCG---G-G--TCSEEEEESSGGG--C
T ss_pred cEEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccc--cCc---h-h--cCcEEEecCCccc--C
Confidence 7888888999753 35679999999999999999994 333322210 001 1 1 1248899999997 6
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccc-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMY-GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
|+|+||++ +.+++ +.+.+........ .+++...+.++..++... ..++.+.++++++++++.+.+.|+
T Consensus 239 g~~~g~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~ 307 (425)
T 3ecd_A 239 GPRGGFVL--TNDEE----IAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA-----LTDDFKTYIDRVLANAQALGDVLK 307 (425)
T ss_dssp CCSCEEEE--ESCHH----HHHHHHHHHC-----CCCHHHHHHHHHHHHHH-----TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEE--eCCHH----HHHHHHhhhCccccCCccHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 78999996 43356 6666655433222 234444444443333211 114567788889999999999998
Q ss_pred hhCCCCCcccccc-CcceeEecCC-----CHHHHHHHhhhccEEEe----CC--------C--cEEecc-----CCCCcH
Q 013839 355 KLGSSLNWEHITN-QLGMFCFSGL-----TPYQVDRLAKEFHIYMT----QD--------G--RISMAG-----VTTGNV 409 (435)
Q Consensus 355 ~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~ll~~~gI~i~----pg--------g--Ris~~~-----~~~e~i 409 (435)
+.| +.+..+ .++.++|+.+ +.+.+.++++++||.+. |+ + |+++.. .+++++
T Consensus 308 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 308 AGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred hCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 876 344433 3556666643 56677777788999998 54 1 776322 247899
Q ss_pred HHHHHHHHHHHHhh
Q 013839 410 NYLANAIHEVTRSE 423 (435)
Q Consensus 410 ~~~~~~l~~~l~~~ 423 (435)
++++++|++++++.
T Consensus 384 ~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 384 REVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998765
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-22 Score=195.32 Aligned_cols=164 Identities=10% Similarity=0.015 Sum_probs=130.8
Q ss_pred CCCCCCC--cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH---
Q 013839 85 FLESISA--SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--- 159 (435)
Q Consensus 85 ~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--- 159 (435)
.+.|... ....++++.+++++. . +++. +++||++|+.++ +..++.+||+|+++.|+|......
T Consensus 47 ~~~y~~~~~~~~~~l~~~la~~~g-~-------~~~~--~~~~gt~a~~~a--l~~l~~~gd~vi~~~~~~~~~~~~~~~ 114 (412)
T 2cb1_A 47 GYVYARQKDPTAKALEERLKALEG-A-------LEAV--VLASGQAATFAA--LLALLRPGDEVVAAKGLFGQTIGLFGQ 114 (412)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHT-C-------SEEE--EESSHHHHHHHH--HHTTCCTTCEEEEETTCCHHHHHHHHH
T ss_pred CcCcCCCCChHHHHHHHHHHHHhC-C-------CcEE--EECCHHHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHH
Confidence 4456643 567899999999983 2 1455 899999999988 666788999999999999876554
Q ss_pred -HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC
Q 013839 160 -WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ 238 (435)
Q Consensus 160 -~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~ 238 (435)
++..|++++.++. |+++|+++++ +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|.
T Consensus 115 ~~~~~g~~~~~~~~--------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 115 VLSLMGVTVRYVDP--------EPEAVREALS---AKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp TTTTTTCEEEEECS--------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHHcCCEEEEECC--------CHHHHHHHhc---cCCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 3457888877754 3889999987 67899999999999999985 7799999999999999999997
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.+.+.. . +. + .+.++++.|+||.++.+|.|+|++++
T Consensus 181 ~~~~~~---~--~~----~-~~~di~~~S~~K~~~~~~~~~G~~~~ 216 (412)
T 2cb1_A 181 AAGALC---R--PL----A-WGAHVVVESLTKWASGHGSVLGGAVL 216 (412)
T ss_dssp TTTTSC---C--GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cccccC---C--cc----c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence 763221 1 11 1 24689999999999889999999974
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=208.51 Aligned_cols=292 Identities=15% Similarity=0.070 Sum_probs=197.6
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC---EEEEcCCCChhhHH----HHhhCCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES---HIYFPDPTWSNHHN----IWRDAQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd---~Vlv~~p~y~~~~~----~~~~~g~~ 166 (435)
..++++.+++++ +.. +++|+ +++|+++++.++ +.+++.+|| +|+++.|+|+.... .++..|++
T Consensus 113 ~~~l~~~la~~~-g~~-----~~~v~--~t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~ 182 (465)
T 3e9k_A 113 DESIVGLMKDIV-GAN-----EKEIA--LMNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN 182 (465)
T ss_dssp THHHHGGGHHHH-TCC-----GGGEE--ECSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHc-CCC-----cCCEE--EECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence 356888899887 332 56888 999999999988 666666665 59999999987443 56678988
Q ss_pred eee----e-eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 167 ERT----Y-HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 167 ~~~----v-~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
+.. + +. ++++.+|+++|+++++++.++++++++++||||||.+++. ++|.++|++||+++|+|+++....
T Consensus 183 ~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~g~ 257 (465)
T 3e9k_A 183 IEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAVGN 257 (465)
T ss_dssp HHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhcCC
Confidence 643 2 32 3457889999999997432478999999999999999874 689999999999999999965432
Q ss_pred CCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh------------------
Q 013839 242 SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA------------------ 303 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~------------------ 303 (435)
.. . .+.. .+.++++.|++|.+.....++|++.+ +++ +++.+....
T Consensus 258 ~~-~-----~~~~----~~~D~~~~s~~K~l~~gp~~~g~l~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~ 320 (465)
T 3e9k_A 258 VE-L-----YLHD----WGVDFACWCSYKYLNAGAGGIAGAFI---HEK----HAHTIKPALVGWFGHELSTRFKMDNKL 320 (465)
T ss_dssp SC-C-----CHHH----HTCCEEEECSSSTTCCCTTCCCEEEE---CGG----GTTTSCCSSCCGGGBCHHHHTTCCSCC
T ss_pred cC-C-----chhh----cCCCEEEECcccccccCCCceEEEEE---cHH----HHhhcCCcccCccCCCCCcccccCCCc
Confidence 21 1 1111 13468889999999322236899864 666 433322110
Q ss_pred -------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------CCccccccC-
Q 013839 304 -------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS-------LNWEHITNQ- 368 (435)
Q Consensus 304 -------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~- 368 (435)
+....+++.+...++.+++..-. ...+++.++++.++++++.+.|+++..+ .++.+..+.
T Consensus 321 ~~~~~~~~~~~gt~~~~~~~a~~aal~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~ 395 (465)
T 3e9k_A 321 QLIPGVCGFRISNPPILLVCSLHASLEIFK-----QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSH 395 (465)
T ss_dssp CBCSSGGGGCCSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSS
T ss_pred CcCCChHHhccCCccHHHHHHHHHHHHHHH-----HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCC
Confidence 00112455555555555554221 1236788899999999999999874100 124555544
Q ss_pred ---cceeEecCC--CHH-HHHHHhhhccEEEeCC--C--cEEe--ccCCCCcHHHHHHHHHHHHHhh
Q 013839 369 ---LGMFCFSGL--TPY-QVDRLAKEFHIYMTQD--G--RISM--AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 ---~g~~~~~~~--~~~-~~~~ll~~~gI~i~pg--g--Ris~--~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|.++++.+ +.+ ..+.| .++||.+... + |+++ ...++++++++++.|++++++.
T Consensus 396 ~~~~g~~~~~~~~~~~~~l~~~L-~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 396 VEERGCQLTITFSVPNKDVFQEL-EKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp GGGBCSCEEEEECCTTCCHHHHH-HTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HhhcccEEEEEecCCHHHHHHHH-HHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 244555433 333 44555 5679998754 2 9987 3347899999999999988653
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=210.88 Aligned_cols=330 Identities=15% Similarity=0.166 Sum_probs=203.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCC------CCCCcccHHHHHHHHHhH---cCCCCccccC--CCe
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLE------SISASVSTKMVEESVKLV---YGKDSDVVKE--GRS 118 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~--~~v 118 (435)
.+.|+|..|+. +.++.+++.+...+.+....+ |....+.+++++.+.+++ ++.... + .+|
T Consensus 44 ~~~i~L~a~e~------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~---~~~~~V 114 (483)
T 1rv3_A 44 RVGLELIASEN------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ---CWGVNV 114 (483)
T ss_dssp HSSEECCTTCC------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT---TEEEEC
T ss_pred hcCeEEEcCCC------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc---cCceEE
Confidence 46899987772 233333333333333321112 333344556664444443 243211 1 125
Q ss_pred eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH--------HhhCC--CCeeeeeecCCCCCCcChHhHHHH
Q 013839 119 AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--------WRDAQ--IPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 119 ~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
. ++ +|++++.++ +.++++|||+|++++|.|.++... +...| .+++++++ +++++.+|+++|+++
T Consensus 115 ~--~~-sGs~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~-~~~~~~iD~d~le~~ 188 (483)
T 1rv3_A 115 Q--PY-SGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEEN 188 (483)
T ss_dssp C--CS-SHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHH
T ss_pred E--EC-CcHHHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc-ccCCCcCCHHHHHHH
Confidence 5 44 444777776 677789999999999988776432 22233 33444444 345688999999999
Q ss_pred hhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 189 IKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 189 i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
+.+ +++++|++ +++||+ ...+ +++|.++|++||+++|+|++|. ++.+.+.. ..++ . ...+++.|
T Consensus 189 i~~--~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~--~~p~----~--~~div~~s 253 (483)
T 1rv3_A 189 ARL--FHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPF----E--HCHVVTTT 253 (483)
T ss_dssp HHH--HCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGG----G--TCSEEEEE
T ss_pred Hhh--cCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCC--CCCC----C--CCcEEEec
Confidence 973 35678888 889998 6665 6799999999999999999964 33222111 0111 1 23588999
Q ss_pred ccccccccCCcccEEEEEecChhH-HH---------HHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQ-AA---------AIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~-~~---------~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+||++ .|+|.||+++ +++.. +. .+...+...... ...+++.....++..++.... ....+
T Consensus 254 ~~K~l--~GprgG~i~~--~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~-----~~~~~ 324 (483)
T 1rv3_A 254 THKTL--RGCRAGMIFY--RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM-----TPEFK 324 (483)
T ss_dssp SSGGG--CCCSCEEEEE--ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT-----SHHHH
T ss_pred CcccC--CCCCceEEEE--cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh-----ChhHH
Confidence 99987 6889999974 23200 00 033334332222 123444444445444553211 13456
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccC-cceeEec-----CCCHHHHHHHhhhccEEEe----CC-------C--
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ-LGMFCFS-----GLTPYQVDRLAKEFHIYMT----QD-------G-- 397 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~-----~~~~~~~~~ll~~~gI~i~----pg-------g-- 397 (435)
++.+++.++++++.+.|.++| +.+..+. ...+.|+ +++.+.+.++|++.||.+. || +
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~i 400 (483)
T 1rv3_A 325 EYQRQVVANCRALSAALVELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGL 400 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceE
Confidence 788889999999999999886 3444443 3345565 3466677777788999998 65 1
Q ss_pred cEEeccC-C----CCcHHHHHHHHHHHHHh
Q 013839 398 RISMAGV-T----TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 Ris~~~~-~----~e~i~~~~~~l~~~l~~ 422 (435)
||+++.. + ++++++++++|+++++.
T Consensus 401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9998532 3 79999999999998865
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-24 Score=209.26 Aligned_cols=266 Identities=16% Similarity=0.140 Sum_probs=181.3
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhh--CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRD--AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~--~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+.+|++|+..+ +.+++.+||+|++++|+|..+.. .+.. .+..++++++ +++++.+|++++++++.+ .+++
T Consensus 113 ~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~~ 187 (447)
T 3h7f_A 113 PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV-DPATHLIDMDAVRATALE--FRPK 187 (447)
T ss_dssp CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC-CTTTCSCCHHHHHHHHHH--HCCS
T ss_pred eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc-CcccCCcCHHHHHHHHHh--cCCe
Confidence 78889998877 77778999999999999876311 1112 2334555555 345678999999999863 3467
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++|+||++. ++++|.++|++||+++|+|++| .++.+.+.... . + ....+++.|+||.+ +|
T Consensus 188 ~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~---~---~~~di~~~s~sK~l--~G 252 (447)
T 3h7f_A 188 VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--P---V---PHADVVSTTVHKTL--GG 252 (447)
T ss_dssp EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--S---T---TTCSEEEEESSGGG--CC
T ss_pred EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--C---C---CCCcEEEecCCcCC--CC
Confidence 8888899999976 6789999999999999999996 33332221000 0 1 12247799999987 48
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+|.||+++ +++ +++.+.+..... ..+++...+.++..++.... .+..+..++++.++++.+.+.|++
T Consensus 253 ~~gG~i~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 253 GRSGLIVG---KQQ----YAKAINSAVFPGQQGGPLMHVIAGKAVALKIAA-----TPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp CSCEEEEE---CGG----GHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEE---CHH----HHHHHhhhcCCcccCCccHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999964 777 777676654433 23344433444444443211 134567788888899999999887
Q ss_pred h-----CCCCCccccc-cCcceeEecC-----CCHHHHHHHhhhccEEEe----CC---------C-cEEecc-----CC
Q 013839 356 L-----GSSLNWEHIT-NQLGMFCFSG-----LTPYQVDRLAKEFHIYMT----QD---------G-RISMAG-----VT 405 (435)
Q Consensus 356 ~-----~~~~~~~~~~-~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~----pg---------g-Ris~~~-----~~ 405 (435)
. |+ .... +..+.++|+. ++.+.+..+++++||.+. |+ + ||+... .+
T Consensus 321 ~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~ 396 (447)
T 3h7f_A 321 PDVAKAGV----SVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFG 396 (447)
T ss_dssp HHHHHTTC----EEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCC
T ss_pred ccccCCCe----EEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCC
Confidence 6 63 3332 3345566653 366778778888899998 44 1 887532 46
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++++.|.+++++..
T Consensus 397 ~eei~~~~~~l~~~l~~~~ 415 (447)
T 3h7f_A 397 DTEFTEVADIIATALATGS 415 (447)
T ss_dssp HHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 8999999999999987543
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=205.29 Aligned_cols=315 Identities=13% Similarity=0.083 Sum_probs=205.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCC-----eeeEecCCchhHHHHHHHHHHHhC-
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGR-----SAGVQALSGTGACRLFAEFQRRFH- 141 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~-----v~~~~t~gg~~a~~~~~~~~~~~~- 141 (435)
+.+.+++....+....+|....+..++++++.+++ ++.. .++ +. +++||++|+.++ +.++..
T Consensus 56 ~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~-----~~~~~~~~~~--~t~ggtea~~~a--l~a~~~~ 126 (452)
T 2dgk_A 56 ENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAP-----APKNGQAVGT--NTIGSSEACMLG--GMAMKWR 126 (452)
T ss_dssp HHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCC-----CCTTSCCEEE--EESSHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCC-----cccccCCceE--EeCCHHHHHHHH--HHHHHHH
Confidence 34454554333222344666677777777776665 2332 222 55 899999998887 444332
Q ss_pred -------CC-----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 142 -------PE-----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 142 -------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+| ++|++++ +|..+...++..|++++.+++. ++++.+|+++|+++++ +++++|++++|+||||
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTG 201 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTC
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecC-CCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCc
Confidence 55 5999999 9999999999999999999983 3468999999999997 5789999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc------CceeeeeccCCCccC---CCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 210 VDPTEEQWREISYQFKVK------GHFPFFDMAYQGFAS---GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~------~~~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
.+.+ +++|.++|++| ++++++|++|..+.. .+ . .........-++++.|.+| +++.|+++|
T Consensus 202 ~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~---~~~~~~~~~~d~~~~~~hK-~~~~~~~~G 271 (452)
T 2dgk_A 202 NYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP---D---IVWDFRLPRVKSISASGHK-FGLAPLGCG 271 (452)
T ss_dssp BBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT---T---CCCSTTSTTEEEEEEETTT-TTCCCSSCE
T ss_pred ccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc---c---chhhcCCCCCcEEEECccc-ccCCCCCeE
Confidence 9865 56888999995 999999999987642 11 0 0000012234567788899 556889999
Q ss_pred EEEEEecChhHHHHHH-HHHHHHhhcc---------ccCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 281 CLSILCVDSKQAAAIR-SQIQQIARAM---------YGSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~~l~~~~~~~---------~~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
|++ +.+++ +. +.+.....+. ..+. ..+.++++...+. .+.+++..+++.++++
T Consensus 272 ~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~~~~a~ 337 (452)
T 2dgk_A 272 WVI--WRDEE----ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNASYQVAA 337 (452)
T ss_dssp EEE--ESSGG----GSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred EEE--EcCHH----HHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHH
Confidence 996 33443 21 2221100010 0011 2233444433332 1456778888999999
Q ss_pred HHHHHHHhhCCCCCccccc-----cCcceeEec--C-----CCHHHHHHHhhhccEEEe----CC---C----cEEeccC
Q 013839 348 TLRQNLEKLGSSLNWEHIT-----NQLGMFCFS--G-----LTPYQVDRLAKEFHIYMT----QD---G----RISMAGV 404 (435)
Q Consensus 348 ~l~~~l~~~~~~~~~~~~~-----~~~g~~~~~--~-----~~~~~~~~ll~~~gI~i~----pg---g----Ris~~~~ 404 (435)
++.+.|++++. +.+.. +..+++.|- + ++.+.+.+.|.+.||.+. |+ + |++++..
T Consensus 338 ~l~~~L~~~~~---~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~ 414 (452)
T 2dgk_A 338 YLADEIAKLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRG 414 (452)
T ss_dssp HHHHHHHTTSS---EEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTT
T ss_pred HHHHHHHhCCC---eEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCC
Confidence 99999998752 44443 234444432 2 233444334456798543 32 2 9998643
Q ss_pred -CCCcHHHHHHHHHHHHHhhhhh
Q 013839 405 -TTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 405 -~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
+.++++++++.|+++++.+...
T Consensus 415 ~t~e~id~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 415 FEMDFAELLLEDYKASLKYLSDH 437 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 6789999999999988766543
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=202.33 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=188.0
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCC
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIP 166 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 166 (435)
|.+..+..++++.+++++... +++ +++||++|+.++ +.++ +.+||+|+++.|+|..+...++..|++
T Consensus 32 ~~~~~~~~~l~~~la~~~~~~--------~~i--~~~sgt~al~~~--l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~ 99 (373)
T 3frk_A 32 FILGDEDKKFEQEFADYCNVN--------YCI--GCGNGLDALHLI--LKGYDIGFGDEVIVPSNTFIATALAVSYTGAK 99 (373)
T ss_dssp CSSSHHHHHHHHHHHHHHTSS--------EEE--EESCHHHHHHHH--HHHTTCCTTCEEEEETTSCTHHHHHHHHHSCE
T ss_pred ccCCchHHHHHHHHHHHhCCC--------eEE--EeCCHHHHHHHH--HHHcCCCCcCEEEECCCCcHHHHHHHHHcCCE
Confidence 667788999999999998321 445 799999999888 6666 789999999999999999999999999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. +++++.+|+++++++++ +++++++ |+||||...+ +++|.++|++||+++|+|++|......+.
T Consensus 100 ~~~~~~-~~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~- 168 (373)
T 3frk_A 100 PIFVEP-DIRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYKG- 168 (373)
T ss_dssp EEEECE-ETTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT-
T ss_pred EEEEec-cccccCcCHHHHHHhcC---CCCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEECC-
Confidence 999998 45678999999999987 5777777 6899998765 56899999999999999999865332111
Q ss_pred ccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc------------ccCCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM------------YGSPPV 312 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~ 312 (435)
. ..... ..+.+.||| |.++.+|. .|+++ +.+++ +.+.++...... ....+.
T Consensus 169 -~-----~~~~~--~d~~~~S~~~~K~l~~~g~-gg~~~--~~~~~----~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 233 (373)
T 3frk_A 169 -M-----KVGSL--GDAAGFSFYPAKNLGSLGD-GGAVV--TNDKD----LAEKIKALSNYGSEKKYHHIYKGFNSRLDE 233 (373)
T ss_dssp -E-----ETTSS--SSEEEEECCTTSSSCCSSS-CEEEE--ESCHH----HHHHHHHHHBTTCSBTTBCCSCCCBCCCCH
T ss_pred -E-----ecccc--ccEEEEeCcCCCccCccce-eEEEE--eCCHH----HHHHHHHHHhcCcccCCccccccccCCCCH
Confidence 0 01111 247778877 88874354 67775 44566 555555443211 111222
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-ccCc---ceeEe--cCCCHHHHHHHh
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TNQL---GMFCF--SGLTPYQVDRLA 386 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~---g~~~~--~~~~~~~~~~ll 386 (435)
+...+....+ +.+++..++.+++.+.+.+.|++++ +... .+.+ +++.+ ...+.+.+.+.|
T Consensus 234 ~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 299 (373)
T 3frk_A 234 LQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGINNPN----VIIPVEADYAKHVWYTFVIRSEKRDELQKYL 299 (373)
T ss_dssp HHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCCCTT----EECCCCCTTEECCCSSEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccCc----eEeccCCCCCceeeEEEEEEeCCHHHHHHHH
Confidence 2222211111 2344556666677777777776654 1221 1111 11111 122566665556
Q ss_pred hhccEEEeCC-----------------------------C--cEEec-cCCCCcHHHHHHHHHHHHH
Q 013839 387 KEFHIYMTQD-----------------------------G--RISMA-GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 387 ~~~gI~i~pg-----------------------------g--Ris~~-~~~~e~i~~~~~~l~~~l~ 421 (435)
+++||.+.++ + |+++. ..+++|++++++.|++...
T Consensus 300 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 300 NNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred HHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 7789998732 1 66654 3478899999998877654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=209.08 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=187.7
Q ss_pred HHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-H--HhhCC--CCeeeeee
Q 013839 98 VEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-I--WRDAQ--IPERTYHY 172 (435)
Q Consensus 98 r~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~--~~~~g--~~~~~v~~ 172 (435)
|+.+++++ +.. ++.+ ++.+|++|+.++ +..++.+||+|++++|+|+.+.. . +...| .+++.+++
T Consensus 75 r~~la~~~-g~~-----~~~i---~~~sGt~a~~~a--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (405)
T 2vi8_A 75 RERAKQLF-GAE-----HANV---QPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV 143 (405)
T ss_dssp HHHHHHHH-TCS-----EEEC---CCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECB
T ss_pred HHHHHHHh-CCC-----ceEE---EecCcHHHHHHH--HHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccc
Confidence 35788877 332 2233 345669999888 66668899999999999977643 1 12223 36666665
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC-CCCcccHHH
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS-GDLDKDAQA 251 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~-~~~~~~~~~ 251 (435)
+++++.+|++++++++.+. +++++++ +|+|+ |... ++++|.++|++||+++|+||+|..... .+. ....
T Consensus 144 -~~~~~~~d~~~l~~~i~~~--~~~~v~~-~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~ 213 (405)
T 2vi8_A 144 -DPETHVIDYDDVREKARLH--RPKLIVA-AAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP 213 (405)
T ss_dssp -CTTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS
T ss_pred -ccccCCcCHHHHHHHHHhc--CCeEEEE-eCCCC-CccC---CHHHHHHHHHHcCCEEEEEccccccccccCc--CCCc
Confidence 3356789999999999731 4567766 44453 3333 378999999999999999999873221 111 0000
Q ss_pred HHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCC-ChhHHHHHHHHhCChhhHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSP-PVHGILLVATILSDPNLKS 329 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~~l~~ 329 (435)
+ . ...++++|+||.++ ++| ||+++ +++ +++.+.........+. +.....++..++....
T Consensus 214 ---~-~--~~di~~~s~sK~~~g~~g---G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--- 274 (405)
T 2vi8_A 214 ---V-P--YAHFVTTTTHKTLRGPRG---GMILC---QEQ----FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--- 274 (405)
T ss_dssp ---T-T--TCSEEEEESSSTTCCCSC---EEEEE---CHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH---
T ss_pred ---c-c--cCCEEEEeccccCCCCCC---eEEEE---cHH----HHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH---
Confidence 1 1 23488999999997 555 99964 777 7777766543333333 3333334344554211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-CcceeEecCC-----CHHHHHHHhhhccEEEeCC-------
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-QLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD------- 396 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg------- 396 (435)
..++++.+++++++++++.+.|+++| +.+..+ ..++++|+.+ +.+.+.+.|.++||.+.+|
T Consensus 275 --~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 348 (405)
T 2vi8_A 275 --QDDFKAYAKRVVDNAKRLASALQNEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348 (405)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSS
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccC
Confidence 14567888899999999999998875 345444 3567777744 4555655567789999863
Q ss_pred -----C--cEEecc-----CCCCcHHHHHHHHHHHHHhhh
Q 013839 397 -----G--RISMAG-----VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 -----g--Ris~~~-----~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ |++++. .+++++++++++|++++++..
T Consensus 349 ~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 1 999863 478999999999999987654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=196.66 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=154.1
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~ 166 (435)
..+..++|+.+++++... +.+ ++.+|++|+.++ +. ++.+||+|+++.|.|.+... .++..|++
T Consensus 54 ~~~~~~lr~~la~~~g~~--------~~i--~~~sGt~a~~~a--l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 120 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQ--------YGL--AFSSGSATTATI--LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120 (393)
T ss_dssp CHHHHHHHHHHHHHTTCS--------EEE--EESCHHHHHHHH--HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred ChhHHHHHHHHHHHhCCC--------cEE--EECChHHHHHHH--HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 356789999999998322 233 577779999888 66 78899999999999985544 34567888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CceeeeeccCCCccC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK----GHFPFFDMAYQGFAS 242 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~----~~~vi~Deay~~~~~ 242 (435)
++.++.. | ++++++++ +++++|++++|+||||.+++ +++|.++|++| |+++|+|++|..+.+
T Consensus 121 v~~v~~~-------d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 121 TSFTNDL-------L-NDLPQLIK---ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp CEEESSH-------H-HHHHHHSC---SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred EEEeCCC-------h-HHHHHhcc---cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8888752 6 88988887 67899999999999999986 66999999999 999999999876654
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHH
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~ 321 (435)
.. . ... +.++++.|+||.+|.+|+|+ ||++ +++++ +++.+..........++...+.++...
T Consensus 187 ~~----~------~~~-~~di~~~S~sK~~g~~G~rigG~~~--~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~ 249 (393)
T 1n8p_A 187 SN----P------LNF-GADIVVHSATKYINGHSDVVLGVLA--TNNKP----LYERLQFLQNAIGAIPSPFDAWLTHRG 249 (393)
T ss_dssp CC----G------GGG-TCSEEEEETTTTTTCSSCCCCEEEE--ESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred CC----H------HHc-CCeEEEEECcccccCCCCceeEEEE--eCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 21 1 111 46799999999999999999 8885 43467 666666554433334555555555445
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+.. +....++..++++.+.+.|++.
T Consensus 250 l~~----------~~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 250 LKT----------LHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HTT----------HHHHHHHHHHHHHHHHHHHTSC
T ss_pred cch----------HHHHHHHHHHHHHHHHHHHHhC
Confidence 543 2233444555666666677654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=200.43 Aligned_cols=284 Identities=10% Similarity=-0.049 Sum_probs=188.6
Q ss_pred CCCCcc--cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCC
Q 013839 88 SISASV--STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQ 164 (435)
Q Consensus 88 Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g 164 (435)
|.+..| ..++++++++++. . ++++ +++||++|+.++ +.++ +.+||+|+++.|+|..+...++..|
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~-~-------~~v~--~~~ggt~al~~~--~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g 93 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK-S-------ENAL--ALNSATAALHLA--LRVAGVKQDDIVLASSFTFIASVAPICYLK 93 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC-C-------SEEE--EESCHHHHHHHH--HHHTTCCTTCEEEEESSSCGGGTHHHHHTT
T ss_pred CccCCChHHHHHHHHHHHHhC-C-------CcEE--EeCCHHHHHHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcC
Confidence 666567 8999999999983 2 2566 899999999988 6666 7899999999999999999999999
Q ss_pred CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCC
Q 013839 165 IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASG 243 (435)
Q Consensus 165 ~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~ 243 (435)
++++.++. + +++.+|++++++++++.+.++++++++ ||||.. .++++|.++|+++|+++|+|++|. ++.+.
T Consensus 94 ~~~~~v~~-~-~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 165 (394)
T 1o69_A 94 AKPVFIDC-D-ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNA---AKMDEIVEICKENDIVLIEDAAEALGSFYK 165 (394)
T ss_dssp CEEEEECB-C-TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred CEEEEEEe-C-CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCCh---hhHHHHHHHHHHcCCEEEEECcCcccceeC
Confidence 99999988 3 567899999999997432257777775 489954 567799999999999999999997 55543
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccC--------------
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGS-------------- 309 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------- 309 (435)
+. .. ....+-++...|.+|.+ +|.|+||++ +++++ +++.++........+
T Consensus 166 ~~--~~------~~~~~~~~~s~s~~K~l--~~~~~G~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~~~~~g~~~~ 229 (394)
T 1o69_A 166 NK--AL------GTFGEFGVYSYNGNKII--TTSGGGMLI--GKNKE----KIEKARFYSTQARENCLHYEHLDYGYNYR 229 (394)
T ss_dssp TE--ET------TSSSSEEEEECCTTSSS--CCSSCEEEE--ESCHH----HHHHHHHHTBTCCCSSSSCCCSSCCCBCB
T ss_pred Cc--cc------ccccCcEEEEEeCCccC--CCCCceEEE--ECCHH----HHHHHHHHHHhccccCccccccccCcccC
Confidence 21 10 11122233333445655 567999996 43467 777776643322111
Q ss_pred CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc----Ccce-eEec--C------
Q 013839 310 PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN----QLGM-FCFS--G------ 376 (435)
Q Consensus 310 ~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~-~~~~--~------ 376 (435)
.+.+...++...+ +.+++..++++++++++.+.|+++ . .+.++ ..++ ..++ .
T Consensus 230 ~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~l~~~L~~~-~----~~~~~~~~~~~~~~~~~i~~~~~~~~~ 294 (394)
T 1o69_A 230 LSNVLGAIGVAQM----------EVLEQRVLKKREIYEWYKEFLGEY-F----SFLDELENSRSNRWLSTALINFDKNEL 294 (394)
T ss_dssp CCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHTTT-E----ECCCCCTTEECCCSSEEEEESCCGGGS
T ss_pred cCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccc-c----cccCCCCCCcceeEEEEEEecchhhcc
Confidence 1112211111112 224456677888888888888764 2 12222 1232 1222 2
Q ss_pred -----------------CCHHHHHHHhhhccEEEeCCC-----------------------------cEEeccCCCCcHH
Q 013839 377 -----------------LTPYQVDRLAKEFHIYMTQDG-----------------------------RISMAGVTTGNVN 410 (435)
Q Consensus 377 -----------------~~~~~~~~ll~~~gI~i~pgg-----------------------------Ris~~~~~~e~i~ 410 (435)
.+.+.+.+.|.++||.++++. |.+....+++|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~ 374 (394)
T 1o69_A 295 NACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY 374 (394)
T ss_dssp CCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence 134455555567899998761 1111124789999
Q ss_pred HHHHHHHHHHHh
Q 013839 411 YLANAIHEVTRS 422 (435)
Q Consensus 411 ~~~~~l~~~l~~ 422 (435)
+++++|+++++.
T Consensus 375 ~~~~~l~~~~~~ 386 (394)
T 1o69_A 375 EISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=202.99 Aligned_cols=274 Identities=12% Similarity=0.032 Sum_probs=181.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh-hHHHHhhC--CCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN-HHNIWRDA--QIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~ 169 (435)
..++++.+++++ +.. . +++++ + ++||++|+.++ +.+++.+| .+.+..+.|.. ....+... |++++.
T Consensus 80 ~~~~~~~la~~~-g~~-~---~~~i~--~~t~g~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~ 149 (398)
T 2fyf_A 80 VGRVRSGLAELF-SLP-D---GYEVI--LGNGGATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPII 149 (398)
T ss_dssp HHHHHHHHHHHT-TCC-T---TCEEE--EEETCHHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEE
T ss_pred HHHHHHHHHHHh-CCC-C---CceEE--EeCCchhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEE
Confidence 567888888887 332 1 34777 7 99999999998 67677787 22233333321 12234555 788888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++.. +++..+. .+. +++++|++++|+||||.+++.+++.++ +|+++|+|++|..+... . +
T Consensus 150 v~~~--~g~~~~~-----~i~---~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~-~--~- 209 (398)
T 2fyf_A 150 ITSD--PGSAPEP-----QTD---PSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP-V--D- 209 (398)
T ss_dssp EECC--TTCCCCC-----CCC---TTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC-C--C-
T ss_pred EecC--CCCCCCc-----ccc---CCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc-c--C-
Confidence 8872 3333332 133 567899999999999999998866554 89999999998765432 1 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------hcccc
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------RAMYG 308 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~ 308 (435)
+ . +.++++.|+||.+|++| ++||+++ +++ +++.+++.. .....
T Consensus 210 --~----~--~~di~~~s~sK~~~~~g-g~g~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (398)
T 2fyf_A 210 --I----A--ETDAYYFAPQKNFASDG-GLWLAIM---SPA----ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYN 273 (398)
T ss_dssp --G----G--GCSEEEECTTSTTCSCS-SEEEEEE---CHH----HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSS
T ss_pred --c----c--cCcEEEEecCcccCCCC-ceEEEEE---CHH----HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCC
Confidence 1 1 23578999999999775 5899864 777 555553210 12234
Q ss_pred CCChhHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCCccccc--c--CcceeEecC----CC
Q 013839 309 SPPVHGILLVATILSDPNLKSLWIDE--VKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT--N--QLGMFCFSG----LT 378 (435)
Q Consensus 309 ~~~~~~q~~~~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~g~~~~~~----~~ 378 (435)
+++...+.++..++... .+. +++.+++++++++.+.+.|++++ ++.+.. + .+++++|+. .+
T Consensus 274 t~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (398)
T 2fyf_A 274 TPAIATLALLAEQIDWL------VGNGGLDWAVKRTADSSQRLYSWAQERP---YTTPFVTDPGLRSQVVGTIDFVDDVD 344 (398)
T ss_dssp CCCHHHHHHHHHHHHHH------HHHTSHHHHHHHHHHHHHHHHHHHHHST---TEEESCCSGGGBCSSEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHHHHHHHcC---CceeccCChhhcCCcEEEEECCCCCC
Confidence 56666666666666431 122 67888899999999999999873 144442 3 345466664 35
Q ss_pred HHHHHHHhhhccEEEeCC------C--cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 379 PYQVDRLAKEFHIYMTQD------G--RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg------g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+.+.|.++||.+.+| + ||+++. .+++++++++++|++++++
T Consensus 345 ~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 345 AGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 555533445579999874 2 999863 3789999999999988754
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=202.09 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=173.2
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCC--CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQ--IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g--~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+.+|++|+.++ +.+++.+||+|+++.|+|..+. ..+...| ...+.++. ++++.+|+++|++++.+ .+++
T Consensus 98 ~~sGs~a~~~a--~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~i~~--~~~~ 171 (420)
T 3gbx_A 98 PHSGSQANFAV--YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI--DESGKIDYDEMAKLAKE--HKPK 171 (420)
T ss_dssp CSSHHHHHHHH--HHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEE--CTTCSCCHHHHHHHHHH--HCCS
T ss_pred ecCcHHHHHHH--HHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccC--CccCCcCHHHHHHHHHh--cCCe
Confidence 45668888887 6777899999999999997743 2222223 34445555 35578999999999973 2478
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++|+||+ .. ++++|.++|++||+++|+||+|.. +...+.. .......+++++|+||.++ |
T Consensus 172 ~v~~~~~~~~~--~~---~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~--------~~~~~~~di~~~s~sK~~~--g 236 (420)
T 3gbx_A 172 MIIGGFSAYSG--VV---DWAKMREIADSIGAYLFVDMAHVAGLIAAGVY--------PNPVPHAHVVTTTTHKTLA--G 236 (420)
T ss_dssp EEEECCTTCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSS--------CCSTTTSSEEEEESSGGGC--S
T ss_pred EEEEecCccCC--cc---CHHHHHHHHHHcCCEEEEECCcchhceecccC--------CcccccCCEEEeecccCCC--C
Confidence 88998999985 33 377999999999999999999642 2211100 0011124588999999985 5
Q ss_pred CcccEEEEEecCh---hHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDS---KQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 277 ~RvG~~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
.+.||+++ ++ + +.+.+....... ..+++...+.++..++... ..++.++.++++.++++.+.+.
T Consensus 237 ~~gg~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 304 (420)
T 3gbx_A 237 PRGGLILA---KGGDEE----LYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA-----MEPEFKVYQQQVAKNAKAMVEV 304 (420)
T ss_dssp CSCEEEEE---SSCCHH----HHHHHHHHHC----CCCCHHHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEE---cCCcHH----HHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH-----HhHhHHHHHHHHHHHHHHHHHH
Confidence 66699864 55 5 666665543322 2344444444444333211 1145677888899999999999
Q ss_pred HHhhCCCCCcccccc-CcceeEecC-----CCHHHHHHHhhhccEEEeC-------C---C----cEEecc-----CCCC
Q 013839 353 LEKLGSSLNWEHITN-QLGMFCFSG-----LTPYQVDRLAKEFHIYMTQ-------D---G----RISMAG-----VTTG 407 (435)
Q Consensus 353 l~~~~~~~~~~~~~~-~~g~~~~~~-----~~~~~~~~ll~~~gI~i~p-------g---g----Ris~~~-----~~~e 407 (435)
|++.+ +.+..+ ..+.++|+. .+.+.+.++++++||.+.+ + + ||++.. .+++
T Consensus 305 L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~ 380 (420)
T 3gbx_A 305 FLNRG----YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEA 380 (420)
T ss_dssp HHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred HHhcC----CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHH
Confidence 98876 344432 445566653 3566777777889999987 2 1 888753 2468
Q ss_pred cHHHHHHHHHHHHHhhh
Q 013839 408 NVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~~~ 424 (435)
+++++++.|++++++..
T Consensus 381 ~i~~~~~~l~~~l~~~~ 397 (420)
T 3gbx_A 381 EVKELAGWMCDVLDNIN 397 (420)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 89999999999886543
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=192.51 Aligned_cols=308 Identities=13% Similarity=0.009 Sum_probs=192.9
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHH-HHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCC
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEES-VKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPES 144 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd 144 (435)
+.+++.++.+.+.+..+....|. ....+|++++ ++++. . .++++ ++.+|++|+.++ +.++ +++||
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~g-~------~~~~v--~~~sgt~al~~a--l~~l~~~~Gd 79 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFFQ-N------RGAVT--TVANATLGLMAA--IQLKKRKKGK 79 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTST-T------CSEEE--EESCHHHHHHHH--HHHHSCTTCC
T ss_pred CCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHhC-C------CCeEE--EeCCHHHHHHHH--HHHcCCCCcC
Confidence 44444445444454433211123 3578999999 99873 1 12444 799999999888 6666 78999
Q ss_pred EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS--SFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 145 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~--~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
+|+++.|+|..+...+...|++++.+++ +++++.+|++++++++.+ ++ +++++ |+||||...+ +++|.+
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~--~~~~tk~v~---~~~~~G~~~~---~~~i~~ 150 (377)
T 3ju7_A 80 YALMPSFTFPATPLAAIWCGLEPYFIDI-SIDDWYMDKTVLWDKIEE--LKEEVAIVV---PYATFGSWMN---LEEYEE 150 (377)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHHHH--HGGGEEEEC---CBCGGGBCCC---CHHHHH
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEec-CCccCCcCHHHHHHHHhc--CCCCceEEE---EECCCCCccC---HHHHHH
Confidence 9999999999999999999999999998 456789999999998831 34 78776 5789998765 558888
Q ss_pred HHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 223 QFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 223 ~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
+|+ ||+++|+|+++........ ... ....+-.++..+.+|.++. | +.|+++ +++++ ++++++.
T Consensus 151 la~-~~~~vi~D~a~a~g~~~~~-------~~~g~~~~d~~~~S~~~~K~l~~-g-~gG~~~--~~~~~----l~~~~~~ 214 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMNGG-------MHYGQDFSGMIIYSFHATKPFGI-G-EGGLIY--SKNEE----DIQRIKR 214 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEETT-------EETTTTCSSEEEEECBTTSSSCC-B-SCEEEE--ESCHH----HHHHHHH
T ss_pred HHh-cCCEEEEECCCccCCeECC-------EeccCCCCcEEEEECCCCCcCCC-C-CcEEEE--ECCHH----HHHHHHH
Confidence 899 9999999999754332110 001 0112333334445799984 5 567774 55677 6666666
Q ss_pred Hhhcc------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCccccccC
Q 013839 302 IARAM------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS-LNWEHITNQ 368 (435)
Q Consensus 302 ~~~~~------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 368 (435)
..... ...++.+.+.++...+ +.+....++.+++++.+.+.|++++.- ..+......
T Consensus 215 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 284 (377)
T 3ju7_A 215 MGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM----------KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTE 284 (377)
T ss_dssp HTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCS
T ss_pred HHhcCCCCCCceeeccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCC
Confidence 54321 1223334333322222 334555666677777778888877520 001111111
Q ss_pred cce--eEecCC----CHHHHHHHhhhccEEEeCCC-----------------------------cEEec-cCCCCcHHHH
Q 013839 369 LGM--FCFSGL----TPYQVDRLAKEFHIYMTQDG-----------------------------RISMA-GVTTGNVNYL 412 (435)
Q Consensus 369 ~g~--~~~~~~----~~~~~~~ll~~~gI~i~pgg-----------------------------Ris~~-~~~~e~i~~~ 412 (435)
..+ |..+.+ +.+.+.+.|+++||.+..+- |+.+. .+++++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v 364 (377)
T 3ju7_A 285 AVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI 364 (377)
T ss_dssp CBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred cceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence 111 212222 36666666678999886430 55543 3478899999
Q ss_pred HHHHHHHHHh
Q 013839 413 ANAIHEVTRS 422 (435)
Q Consensus 413 ~~~l~~~l~~ 422 (435)
++.|++++..
T Consensus 365 ~~~l~~~~~~ 374 (377)
T 3ju7_A 365 VICLGQKVVS 374 (377)
T ss_dssp HHHHTC----
T ss_pred HHHHHHHHhc
Confidence 9999887754
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=191.93 Aligned_cols=278 Identities=14% Similarity=0.020 Sum_probs=183.4
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~ 166 (435)
.....+|++.+++++... ..+ ++.+|++|+.++ +.+++.+||+|++++|+|.++.. .+...|++
T Consensus 81 ~p~~~~le~~lA~l~g~~--------~~v--~~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 148 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGAL--------GVL--ALGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIE 148 (430)
T ss_dssp CHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 355678999999987322 222 577889998888 77778999999999999998877 56688999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++.. |+++++++++ +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 149 ~~~v~~~-------d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~-- 213 (430)
T 3ri6_A 149 VRFVDVM-------DSLAVEHACD---ETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE-- 213 (430)
T ss_dssp EEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC--
T ss_pred EEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 9888751 8899999997 68899999999999999986 5589999999999999999986544321
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhH-----H---------HHHHHHHHHHh-hccccCCC
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQ-----A---------AAIRSQIQQIA-RAMYGSPP 311 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~-----~---------~~~~~~l~~~~-~~~~~~~~ 311 (435)
+ .....++++.|+||.++.+|..+|.+++...+... . ..++..++... ......++
T Consensus 214 ----~-----~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~ 284 (430)
T 3ri6_A 214 ----A-----KRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLS 284 (430)
T ss_dssp ----G-----GGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ----h-----HHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCC
Confidence 1 11134689999999998777777777631122211 0 01122222211 12222333
Q ss_pred hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-ccccC----------------cceeEe
Q 013839 312 VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-HITNQ----------------LGMFCF 374 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~----------------~g~~~~ 374 (435)
....+.+...+ +.+....++..+++..+.+.|++.+. +. +..|. ||+.+|
T Consensus 285 ~~~a~l~l~~l----------~~l~~r~~~~~~na~~la~~L~~~p~---v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ls 351 (430)
T 3ri6_A 285 PHNAYLQSLGL----------ETMALRIERSCQNAQELAHWLLSIPQ---VKCVNHPSLPDSPFYAIAKRQFRYAGSILT 351 (430)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHTTCTT---CEEEECTTSTTSTTHHHHHHHCSSCCSEEE
T ss_pred HHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHhCCCC---ccEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 33222221111 33455556777888888888877642 22 22222 564666
Q ss_pred cCC-CHHHHHHHh---hhccEEEeCCC-------------------------------cEEeccCCCCcHHHHHHHHHHH
Q 013839 375 SGL-TPYQVDRLA---KEFHIYMTQDG-------------------------------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 375 ~~~-~~~~~~~ll---~~~gI~i~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+.+ +.+...+++ +..++.+..|| |+|++ -|+.+.+++.|+++
T Consensus 352 f~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG---~E~~~dl~~dl~~a 428 (430)
T 3ri6_A 352 FELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG---IEEIEDLKEDILQA 428 (430)
T ss_dssp EECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC---SSCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHh
Confidence 666 334333333 33455555442 77764 47888888888876
Q ss_pred H
Q 013839 420 T 420 (435)
Q Consensus 420 l 420 (435)
+
T Consensus 429 l 429 (430)
T 3ri6_A 429 L 429 (430)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=189.19 Aligned_cols=214 Identities=15% Similarity=0.078 Sum_probs=156.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-----hCCCC
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-----DAQIP 166 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~ 166 (435)
....+|++.++++.... +.+ ++++|++|+.++ ++++.+||+|++++|+|.+....+. ..|++
T Consensus 67 p~~~~l~~~la~l~g~~--------~~~--~~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 133 (400)
T 3nmy_A 67 PTRFAYERCVAALEGGT--------RAF--AFASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLD 133 (400)
T ss_dssp HHHHHHHHHHHHHHTCS--------EEE--EESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCE
T ss_pred HHHHHHHHHHHHHhCCC--------CEE--EecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeE
Confidence 34567888888887322 233 688889998764 5578899999999999986655543 35888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .|++++++++. +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|....+..
T Consensus 134 ~~~v~~-------~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-- 198 (400)
T 3nmy_A 134 FSFVDL-------TDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-- 198 (400)
T ss_dssp EEEECT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--
T ss_pred EEEECC-------CCHHHHHHHhc---cCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 888865 17899999997 67899999999999999986 7799999999999999999985322211
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccE-EEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC-LSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
+ .+ ...++++.|+||.++.+|.++|+ ++ ++.+++ +++.+...........+.+.+.++...++.
T Consensus 199 ----~----~~-~g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~----~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~- 263 (400)
T 3nmy_A 199 ----P----LS-LGADLVVHSATKYLNGHSDMVGGIAV-VGDNAE----LAEQMAFLQNSIGGVQGPFDSFLALRGLKT- 263 (400)
T ss_dssp ----G----GG-GTCSEEEEETTTTTTCSSSCCCEEEE-ECSCHH----HHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-
T ss_pred ----h----hh-cCCcEEEecCccccCCCCCcceeEEE-EeCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-
Confidence 0 01 14568999999999988889887 44 355777 777777665555556666666555555543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++.+.+.+.|++.+
T Consensus 264 ---------l~~r~~~~~~~a~~l~~~L~~~p 286 (400)
T 3nmy_A 264 ---------LPLRMRAHCENALALAQWLETHP 286 (400)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 23445566777778888887654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=196.11 Aligned_cols=321 Identities=12% Similarity=0.078 Sum_probs=205.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCC---
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP--- 142 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~--- 142 (435)
+++.+.+++....+.....|....+..++.+.+.+++ ++....+ ++.+.+.+++||++|+.++ +++...+
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~--~~~~~g~~t~ggtea~~~a--~~a~~~~~~~ 143 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEE--AETAVGVGTVGSSEAIMLA--GLAFKRKWQN 143 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCS--SCCCEEEEESSHHHHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCccc--ccCCcceecCcHHHHHHHH--HHHHHHHHhH
Confidence 3444555555443322333444444555655555544 2332110 2334455699999999887 4444333
Q ss_pred -----CC-----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCC
Q 013839 143 -----ES-----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDP 212 (435)
Q Consensus 143 -----gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~ 212 (435)
|| +|+++.++|..+...++..|++++.+++ +++++.+|+++|++++. +++++|++++|+||||.+.
T Consensus 144 ~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~ 219 (502)
T 3hbx_A 144 KRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFE 219 (502)
T ss_dssp HHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECC-BTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBC
T ss_pred HHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEec-CCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCccc
Confidence 76 9999999999999999999999999998 34458999999999998 6789999999999999986
Q ss_pred CHHHHHHHHHHHHhc------CceeeeeccCCCcc----CCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 213 TEEQWREISYQFKVK------GHFPFFDMAYQGFA----SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~------~~~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+ +++|.++|+++ ++++++|++|.++. .+... .. .....-+++..|.+|.++ .+.++||+
T Consensus 220 ~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~---~~----~~~~~~D~v~~s~hK~l~-~p~g~G~~ 288 (502)
T 3hbx_A 220 D---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE---WD----FRLPLVKSINVSGHKYGL-VYAGIGWV 288 (502)
T ss_dssp C---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC---CS----TTSTTEEEEEEETTTTTC-CCSSCEEE
T ss_pred C---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc---cc----cCCCCceEEEECcccccC-CCCCeEEE
Confidence 5 55888889998 99999999997654 11110 00 112245677788999875 66788998
Q ss_pred EEEecChhHHHHHHHHHHHHh-hccc---------cCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 283 SILCVDSKQAAAIRSQIQQIA-RAMY---------GSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~-~~~~---------~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
++ .+++ .+....... .+.. .+. ..+.++++...+.. +...+..++..++++++
T Consensus 289 ~~--~~~~----~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~--------~g~~~~~~~~~~~a~~l 354 (502)
T 3hbx_A 289 IW--RNKE----DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH--------EGYRNVMENCRENMIVL 354 (502)
T ss_dssp EE--SSGG----GSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred EE--eCHH----HhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 63 3554 321111000 0100 111 12233333333321 44567778888888999
Q ss_pred HHHHHhhCCCCCcccccc--CcceeEec--C---CCHHHHHHHhhhccEEEe----CC---C----cEEecc-CCCCcHH
Q 013839 350 RQNLEKLGSSLNWEHITN--QLGMFCFS--G---LTPYQVDRLAKEFHIYMT----QD---G----RISMAG-VTTGNVN 410 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~--~~g~~~~~--~---~~~~~~~~ll~~~gI~i~----pg---g----Ris~~~-~~~e~i~ 410 (435)
.+.|++++. +.+..+ ..+++.|- + ++...+.+.|.++||.+. |. + ||++.. .+.++++
T Consensus 355 ~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid 431 (502)
T 3hbx_A 355 REGLEKTER---FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAE 431 (502)
T ss_dssp HHHHHTTTC---EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHHhCCC---EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHH
Confidence 999998862 445443 44444332 2 344445444567899864 21 2 998853 3789999
Q ss_pred HHHHHHHHHHHhhhh
Q 013839 411 YLANAIHEVTRSEQE 425 (435)
Q Consensus 411 ~~~~~l~~~l~~~~~ 425 (435)
.+++.|+++++++.+
T Consensus 432 ~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 432 RLVIDIEKVMRELDE 446 (502)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=189.04 Aligned_cols=288 Identities=11% Similarity=0.111 Sum_probs=192.8
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCC--Ceeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQI--PERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~--~~~~v 170 (435)
.++++.+++++ +.. +.+. ++.||++|++++ + ..+.+||+|++++++|.++. ..++..|. +++.+
T Consensus 38 ~~~~~~l~~~~-~~~------~~v~--~~~sgt~a~~~~--~-~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 38 NDLLSNLKTVY-NAE------AAVI--IPGSGTYGMEAV--A-RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHH-TCS------EEEE--EESCHHHHHHHH--H-HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHh-CCC------CEEE--EcCChhHHHHHH--H-HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence 35555666655 332 3555 789999999887 3 34679999999999987653 34455554 56666
Q ss_pred eecCC------CC-CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 171 HYYDP------DS-KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 171 ~~~~~------~~-~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
+.... .. ..+|++++++.+.+ ++++++++++++||||..++.+++++|.++|++||+++|+|+++. ..
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g~- 180 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--GC- 180 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--TT-
T ss_pred eccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--CC-
Confidence 65210 11 25899999999953 356788889999999999999999999999999999999999965 21
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-------------------
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR------------------- 304 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~------------------- 304 (435)
...+ +... +.++++.|++|.++ .+.++|++++ +++ +++.+.....
T Consensus 181 -~~~~---~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
T 3ke3_A 181 -VWLD---MKEL----GIDVLISAPQKGWS-STPCAGLVML---SAA----AIKKVESTESNCFSLDLKQWLTIMRAYEN 244 (379)
T ss_dssp -CCCC---HHHH----TCSEEEECTTTTTC-SCCCEEEEEE---CHH----HHHHHHTCCCSCSTTCHHHHHHHHHHHHT
T ss_pred -cccc---cccc----CCCEEEecchhhcC-CCCceEEEEE---CHH----HHHhhhcCCCCceeecHHHHHHHHHhhhc
Confidence 1111 1111 34678899999886 3345788864 777 5555443110
Q ss_pred ---ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC---cceeEecCC-
Q 013839 305 ---AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LGMFCFSGL- 377 (435)
Q Consensus 305 ---~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~~~- 377 (435)
....+++...+.++.++|..-. ++.+++.+++++++++++++.|+++|. ....+. .+....+..
T Consensus 245 g~~~~~~t~~~~~~~a~~aal~~~~-----~~g~~~~~~~~~~l~~~l~~~l~~~g~----~~~~~~~~~~~~i~~~~~~ 315 (379)
T 3ke3_A 245 GGHAYHATMPTDSLRQFRDAILEAK-----EIGFDILRDAQWELGNRVRKVLTDKGI----ESVAAEGFEAPGVVVSYTE 315 (379)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTTC----CBSBCTTCBCSSEEEEECS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHHcCC----EecCCccccCceEEEEccC
Confidence 0112566666666666664321 123678888999999999999999874 233222 221222222
Q ss_pred CHHH-HHHHhhhccEEEeCC----------C---cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 378 TPYQ-VDRLAKEFHIYMTQD----------G---RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 378 ~~~~-~~~ll~~~gI~i~pg----------g---Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+. ..+.|+++||.+.+| + ||++.. .+++++++++++|+++++++.
T Consensus 316 ~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 316 RDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 2332 134456789998875 3 888743 378999999999999987654
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=182.59 Aligned_cols=213 Identities=10% Similarity=0.049 Sum_probs=151.8
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~ 167 (435)
....++++.+|+++... +.+ ++.||++|+.++ +.+++.+||+|+++.|.|.+....+ +..|+++
T Consensus 82 p~~~~le~~lA~l~g~~--------~~i--~~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v 149 (415)
T 2fq6_A 82 LTHFSLQQAMCELEGGA--------GCV--LFPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTT 149 (415)
T ss_dssp HHHHHHHHHHHHHHTCS--------EEE--EESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred chHHHHHHHHHHHhCCC--------eEE--EeCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEE
Confidence 34568999999987321 233 678999999888 7777899999999999998877554 4568888
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCCCccCCCC
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~~~~~~~~ 245 (435)
..++. .|+++++++++ +++++|++++|+||||.+.+ +++|+++|++ ||+++|+|++|.......
T Consensus 150 ~~v~~-------~d~~~le~ai~---~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~- 215 (415)
T 2fq6_A 150 SWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK- 215 (415)
T ss_dssp EEECT-------TCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC-
T ss_pred EEECC-------CCHHHHHHhhc---cCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC-
Confidence 77754 17889999887 67899999999999999986 5699999999 999999999986543221
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCc-ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR-VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + ...++++.|+||.++.+|.+ +||++ + +++ +++.++.........++...+.++...+
T Consensus 216 -----p~----~-~g~Div~~S~sK~lg~~g~~~~G~l~--~-~~~----~~~~l~~~~~~~G~~~~~~~a~~~~~~l-- 276 (415)
T 2fq6_A 216 -----AL----D-FGIDVSIQAATKYLVGHSDAMIGTAV--C-NAR----CWEQLRENAYLMGQMVDADTAYITSRGL-- 276 (415)
T ss_dssp -----GG----G-GTCSEEEEETTTTTTCSSSCCCEEEE--E-CTT----THHHHHHHHHHTTCCCCHHHHHHHHHHH--
T ss_pred -----cc----c-cCCeEEEEeCccccCCCCCceEEEEE--e-CHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhh--
Confidence 11 1 13568899999999988876 47875 3 666 5555555443222233433333222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..++.+.+.+.|++.+
T Consensus 277 --------~~l~~r~~~~~~n~~~l~~~L~~~~ 301 (415)
T 2fq6_A 277 --------RTLGVRLRQHHESSLKVAEWLAEHP 301 (415)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334455666777778888887753
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=191.62 Aligned_cols=286 Identities=12% Similarity=0.040 Sum_probs=178.4
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCe
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
|.+.....++++.+++ + +.+ +++. +++|+++|+.++ +.+++.+||+|+++.|+|..+...+...|+++
T Consensus 53 ~~~~~~~~~~~~~la~-~-g~~------~~v~--~~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~ 120 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-H-SDY------DGYF--LVNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQEG 120 (446)
T ss_dssp TSCSSHHHHHHHHHCS-C-TTE------EEEE--ESSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred cCcchHHHHHHHHHHh-c-CCC------ceEE--EeCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence 5555667788888888 5 432 3566 899999999888 77778899999999999999999999999999
Q ss_pred eeeeecCCCC----CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccC
Q 013839 168 RTYHYYDPDS----KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FAS 242 (435)
Q Consensus 168 ~~v~~~~~~~----~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~ 242 (435)
+.++....++ +.+|++.| +. ++++++++++ +|+||.+.+ +++|.++|++||+++|+|++|.. +.|
T Consensus 121 ~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 121 HFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred EEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 9988731222 56788877 33 5678888888 566999987 56999999999999999999876 333
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHH
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATI 321 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~ 321 (435)
.+. ..+.. .. +..+++.|+||.++ ++.++||+++ +++..+ ...+..... ....+++.....++..+
T Consensus 191 ~~~---~~~~~---~~-g~Di~~~S~~K~l~-~~~g~g~l~~---~~~~i~--~~~~~~~~~~~~~~s~~~~~~aal~~a 257 (446)
T 2x3l_A 191 QGF---PDSTL---NY-QADYVVQSFHKTLP-ALTMGSVLYI---HKNAPY--RENIIEYLSYFQTSSPSYLIMASLESA 257 (446)
T ss_dssp TTS---CCCGG---GG-TCSEEEECHHHHSS-SCTTCEEEEE---ETTCTT--HHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred CCC---CCChH---Hc-CCCEEEECCccccc-cccccEEEEE---cCCcCC--HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 321 11111 11 13489999999654 3345799974 444211 122332222 12233333333333222
Q ss_pred hCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec---CCCHHHHHHHhhhccEEEe-CC
Q 013839 322 LSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS---GLTPYQVDRLAKEFHIYMT-QD 396 (435)
Q Consensus 322 l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~ll~~~gI~i~-pg 396 (435)
+.. +... .++..++..++++.+++. + +.+..+..+.++|+ +.+...+.+.|.++||.+. ++
T Consensus 258 ~~~------l~~~g~~~~~~~~~~l~~~l~~~----g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g 323 (446)
T 2x3l_A 258 AQF------YKTYDSTLFFAKRAQLIECLENK----G----FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELAD 323 (446)
T ss_dssp HHH------HHHCCCHHHHHHHHHHHHHHHHH----T----CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEEC
T ss_pred HHH------HHHhCHHHHHHHHHHHHHHHHHc----C----CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecC
Confidence 210 0010 111344444444444443 4 34444444445666 3455555444455699998 55
Q ss_pred C---cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 397 G---RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 g---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
. |++++. .+++++ +++++|+++++..
T Consensus 324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 3 999864 278889 9999999987654
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=182.06 Aligned_cols=225 Identities=12% Similarity=0.067 Sum_probs=164.0
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe---cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH--
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ---ALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI-- 159 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~---t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~-- 159 (435)
+.|+. .|...|++.+++++ +.. ... + +.+|++|+.++ +.++++|||+|++++ |.|..+...
T Consensus 54 ~~y~~-~~~~~Le~~lA~l~-g~e-------~al--v~p~~~sGt~Ai~~a--l~all~~GD~Vl~~~~~~y~~~~~~~~ 120 (409)
T 3jzl_A 54 YGYDD-EGRDTLERVYATVF-KTE-------AAL--VRPQIISGTHAISTV--LFGILRPDDELLYITGQPYDTLEEIVG 120 (409)
T ss_dssp TCTTC-HHHHHHHHHHHHHH-TCS-------EEE--EETTSCSHHHHHHHH--HHHHCCTTCEEEECSSSCCTTHHHHHT
T ss_pred CCCCh-hHHHHHHHHHHHHh-CCC-------cEE--EECCCccHHHHHHHH--HHHhcCCCCEEEEeCCCCcHhHHHHHh
Confidence 44544 46788999999987 331 222 4 78999998888 778899999999998 999988754
Q ss_pred --------HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh-
Q 013839 160 --------WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS----AHNPTGVDPTEEQWREISYQFKV- 226 (435)
Q Consensus 160 --------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~----p~NPtG~~~~~~~l~~i~~~~~~- 226 (435)
++..|++++.++. .+++.+|+++++++++ ++++++++++ |+||||.+ .++++|+++|++
T Consensus 121 ~~g~~~~~l~~~G~~~~~v~~--~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~~ 192 (409)
T 3jzl_A 121 IRKQGQGSLKDFHIGYSSVPL--LENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKNI 192 (409)
T ss_dssp SSSSSSSCTGGGTCEEEECCC--CTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHHH
T ss_pred cccchhhHHHHcCCEEEEeCC--CCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHhh
Confidence 4567888888887 3457899999999997 6789999999 99999864 788999999999
Q ss_pred -cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHhh
Q 013839 227 -KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIAR 304 (435)
Q Consensus 227 -~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~~ 304 (435)
||+++++|++|..+.+... +. + ...+++++|+||.+|.+|. +.||+++ +++ +++.++....
T Consensus 193 ~~~~~livD~a~~~~~~~~~-----p~----~-~g~Div~~S~sK~lgg~~~~~GG~v~~---~~~----li~~l~~~~~ 255 (409)
T 3jzl_A 193 NPEVIVFVDNCYGEFVEYQE-----PP----E-VGADIIAGSLIKNPGGGLAKTGGYIAG---KEA----LVDLCGYRLT 255 (409)
T ss_dssp CTTCEEEEECTTCTTTSSCC-----SG----G-GTCSEEEEETTSGGGTTTCSSCEEEEE---CHH----HHHHHHHHHS
T ss_pred CCCCEEEEeCCcccccccCC-----cc----c-cCCeEEEECccccCCccCCceEEEEEe---CHH----HHHHHHHHhc
Confidence 9999999999987764311 11 1 1346899999999986653 3578854 888 7777766432
Q ss_pred cc----ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 305 AM----YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 305 ~~----~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
.. ..++....+.++...+ +.....+++..+++..+.+.|+++|.
T Consensus 256 ~~~~g~~~g~~~~~~~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g~ 303 (409)
T 3jzl_A 256 TPGIGREAGASLYSLLEMYQGF----------FLAPHVTAQAIKGARFTAAMLAEFGV 303 (409)
T ss_dssp CTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 1222221122222222 33456677888899999999999984
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=191.01 Aligned_cols=284 Identities=13% Similarity=0.077 Sum_probs=182.7
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchh-HHHHHHHHHHHh--CCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG-ACRLFAEFQRRF--HPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~-a~~~~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
++++.+++++ +.. ++ +. +|+||++ ++.++ +.++. .+|+.|+++++.|..+...++..|++++.++.
T Consensus 137 ~~~~~la~~~-g~~-----~~-~~--~t~g~te~a~~~a--l~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~ 205 (456)
T 2z67_A 137 KILESFFKQL-GLN-----VH-AI--ATPISTGMSISLC--LSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVET 205 (456)
T ss_dssp HHHHHHHHHT-TCC-----CE-EE--EESSCHHHHHHHH--HHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHc-CCC-----CC-EE--EeCcHHHHHHHHH--HHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEE
Confidence 3555555555 332 22 55 8999994 54434 23222 26788999999999999999999999988876
Q ss_pred cC-CCCCCcChHhHHHHh-hcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 173 YD-PDSKSLDFAALMDDI-KNA-PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 173 ~~-~~~~~~d~e~l~~~i-~~~-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
.+ ++++.+|+++|++++ +.. ..++.++++++||||||.+.+ +++|.++|+++|+++++|++|..+..+- ..
T Consensus 206 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~---~~ 279 (456)
T 2z67_A 206 VLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY---LE 279 (456)
T ss_dssp EEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH---HH
T ss_pred eccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh---hH
Confidence 31 345789999999999 420 136788888999999999865 5689999999999999999987665320 01
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
.....+.. ...+++.|++|.++ .+.++||++ +++++ +++.+...........+.+.+.++...+.
T Consensus 280 ~~~~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~--~~~~~----~~~~l~~~~~g~~~~~~~~~~~aal~~l~------ 344 (456)
T 2z67_A 280 KLKKAFKY--RVDAVVSSSDKNLL-TPIGGGLVY--STDAE----FIKEISLSYPGRASATPVVNTLVSLLSMG------ 344 (456)
T ss_dssp HHHHHHTS--CCSEEEEEHHHHHC-CCSSCEEEE--ESCHH----HHHHHHTTSCSCBCSHHHHHHHHHHHHHH------
T ss_pred HHHHhhCC--CCCEEEEcCCCCcC-CCCCeEEEE--EcCHH----HHhhcCcCCCCCCCCCHHHHHHHHHHHHH------
Confidence 11111111 33467889999765 568899996 44566 55555332111111122333444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCCccccccCcceeEecCC--C---HHHHHHHhhhccE---EEe---
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGL--T---PYQVDRLAKEFHI---YMT--- 394 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~--~---~~~~~~ll~~~gI---~i~--- 394 (435)
.+.+++..++..++++++.+.|+++ | +.+..++ +++. +.+ + .++...| .+.|| .+.
T Consensus 345 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~v~~~~-~~v~-~~~~~~~~~~~l~~~L-~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 345 --SKNYLELVKNQKNSKKLLDELLNDLSKKTG----GKFLDVE-SPIA-SCISVNSDPVEIAAKL-YNLRVTGPRGIKKT 415 (456)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCBCCCC-CSSE-EEEECSSCHHHHHHHH-HHTTEESCEEECTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcccccC----CEecCCC-CeEE-EEEecccHHHHHHHHH-HHcCCCcceEEeec
Confidence 1456778888999999999999887 5 2344455 4333 222 2 2444555 45665 343
Q ss_pred -----------CCC--cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 395 -----------QDG--RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 395 -----------pgg--Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
+.+ |++++ ..+++++++++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 223 88876 348899999999998754
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=194.13 Aligned_cols=327 Identities=11% Similarity=0.058 Sum_probs=204.6
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccc----cCCCeeeEecCCchhHHHHHHHHHHHhC
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVV----KEGRSAGVQALSGTGACRLFAEFQRRFH 141 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~----~~~~v~~~~t~gg~~a~~~~~~~~~~~~ 141 (435)
++..+.+++....+.....|....+..++.+++++++ ++.....+ ...+++ +|.||++|+.++. .+...
T Consensus 86 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v--~t~ggTeA~~~al--~~~~~ 161 (486)
T 1js3_A 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGV--IQGSASEATLVAL--LAART 161 (486)
T ss_dssp HHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEE--EESCHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeE--EcCCcHHHHHHHH--HHHHH
Confidence 4444555555544443556777677788888887776 23321000 012344 8999999987773 32211
Q ss_pred ---C------CC--------E--EEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC---CCcEEE
Q 013839 142 ---P------ES--------H--IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP---DSSFFL 199 (435)
Q Consensus 142 ---~------gd--------~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~v 199 (435)
+ || + |++++++|..+...++..|++++.+|+ ++++.+|+++|++++.+.. ..+.++
T Consensus 162 ~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~--d~~~~~d~~~L~~~i~~~~~~g~~p~~v 239 (486)
T 1js3_A 162 KVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFV 239 (486)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec--CCCCCCCHHHHHHHHHHHHhCCCCceEE
Confidence 1 43 3 788999999999999999999999997 3568899999999997321 123588
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++++|+||||.+ +++++|.++|++||+++++|++|..+..... +.... +.....-..++.+++|.++.| +++
T Consensus 240 v~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~--~~g~~~adsi~~~~hK~~~~p-~~~ 311 (486)
T 1js3_A 240 VATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHL--LNGVEFADSFNFNPHKWLLVN-FDC 311 (486)
T ss_dssp EEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGG--GTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH--HHHHH--hcCccccCeeEEchhhhcCCC-cce
Confidence 899999999976 5677999999999999999999977553210 01011 011112234567899999865 899
Q ss_pred cEEEEEecChhHHHHHHHHHH---HHhhc-----------------cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 280 GCLSILCVDSKQAAAIRSQIQ---QIARA-----------------MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~---~~~~~-----------------~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
||++ ++++..+ .+.+. .+... .......+.+.++...+.. +.+++..
T Consensus 312 G~l~--~~~~~~l---~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~--------~g~~~~~ 378 (486)
T 1js3_A 312 SAMW--VKRRTDL---TGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV--------KGLQAYI 378 (486)
T ss_dssp EEEE--ESCHHHH---HGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHH--------HHHHHHH
T ss_pred EEEE--EeCHHHH---HHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhH--------HHHHHHH
Confidence 9996 4455411 11111 00000 0001223444444444321 4567777
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCcccc-ccCcceeEec--CC---CHHHHHHHhhhccEEE-eCC---C----cEEecc--
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHI-TNQLGMFCFS--GL---TPYQVDRLAKEFHIYM-TQD---G----RISMAG-- 403 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~--~~---~~~~~~~ll~~~gI~i-~pg---g----Ris~~~-- 403 (435)
++..++++++.+.|++++. +.+. ++..+++.|. +. +.++.+.+. +.|+.+ .++ | |++++.
T Consensus 379 ~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQDPR---FEVCAEVTLGLVCFRLKGSDGLNEALLERIN-SARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEECSCCCSSEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEeCCCceeEEEEEecChHHHHHHHHHHHH-hcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 8888899999999988632 4443 3556665543 22 233445554 457543 332 2 999754
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
.+++++++++++|+++++++..+
T Consensus 455 ~t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 25679999999999998766543
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=180.58 Aligned_cols=225 Identities=15% Similarity=0.067 Sum_probs=160.9
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHHH----------h
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNIW----------R 161 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~~----------~ 161 (435)
+..++++.+++++ +.... ..++. +.+|++|+.++ +.+++.+||+|++++ |.|..+...+ +
T Consensus 66 ~~~~l~~~la~~~-g~~~~---~~~i~---~~sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~ 136 (431)
T 3ht4_A 66 GRDTLEKVYADVF-GAEAG---LVRPQ---IISGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFK 136 (431)
T ss_dssp HHHHHHHHHHHHT-TCSEE---CCBTT---SCSHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSG
T ss_pred hHHHHHHHHHHHh-CCCcc---cccce---eeCHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHH
Confidence 4456777777776 33211 11222 45889998888 777889999999999 9999888655 3
Q ss_pred hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCC
Q 013839 162 DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP-SAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQ 238 (435)
Q Consensus 162 ~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~-~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~ 238 (435)
..|++++.++. .+++.+|+++++++++ +++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|.
T Consensus 137 ~~G~~~~~v~~--~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~ 211 (431)
T 3ht4_A 137 EYNIGYNAVPL--TEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG 211 (431)
T ss_dssp GGTCEEEECCB--CTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred HcCCEEEEeCC--CCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence 47889999987 3357899999999997 678888888 599999999999999999999999 999999999998
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccc-cCCcccEEEEEecChhHHHHHHHHHHHHhhcccc----CCChh
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL-YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG----SPPVH 313 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~ 313 (435)
.+.++.. . . . ...+++++|+||.+|. .+...||+++ +++ +++.++........ +++..
T Consensus 212 ~~~~~~~---~--~----~-~g~Di~~~S~sK~lgg~~~~~GG~v~~---~~~----li~~l~~~~~~~~~g~~~~~~~~ 274 (431)
T 3ht4_A 212 EFIEEQE---P--C----H-VGADLMAGSLIKNPGGGIVKTGGYIVG---KEQ----YVEACAYRLTSPGIGAEAGASLY 274 (431)
T ss_dssp TTSSSCC---G--G----G-TTCSEEEEETTSGGGTTTCSSCEEEEE---CHH----HHHHHHHHHSCTTTTTSCSCCCS
T ss_pred hhccCCC---c--c----c-cCCeEEEcCccccCCCCCCCceEEEEe---cHH----HHHHHHHHhccCCcccccCccHH
Confidence 8875421 1 1 1 1245899999999653 1233489864 888 77777664432211 12111
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 314 GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 314 ~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
.+.++...+ +......++..+++..+.+.|+++|.
T Consensus 275 ~~~~~~~~l----------~~~~~~~~~~~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 275 SLQEMYQGF----------FLAPHVAGQALKGAIFTAAFLEKLGM 309 (431)
T ss_dssp CSHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhHh----------hhHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 122222222 33455667788888999999999885
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=179.68 Aligned_cols=227 Identities=11% Similarity=0.032 Sum_probs=163.6
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe---cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH--
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ---ALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI-- 159 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~---t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~-- 159 (435)
+.|+. .|...|++.+++++. .. .. ++ +.+|++|+.++ +.++++|||+|++++ |.|..+...
T Consensus 68 y~y~~-~~~~~Le~~lA~l~g-~e-------~a--lv~p~~~sGt~Ai~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g 134 (427)
T 3i16_A 68 YGYGD-IGRDSLDAVYARVFN-TE-------SA--LVRPHFVNGTHALGAA--LFGNLRPGNTMLSVCGEPYDTLHDVIG 134 (427)
T ss_dssp TCTTC-HHHHHHHHHHHHHHT-CS-------EE--EEETTCCSHHHHHHHH--HHHHCCTTCEEEESSSSCCGGGHHHHT
T ss_pred CCCCH-HHHHHHHHHHHHHhC-Cc-------ce--EEeCCCccHHHHHHHH--HHHHhCCCCEEEEeCCCccHHHHHHHh
Confidence 33444 467889999999883 32 11 24 78999998887 788899999999999 999988744
Q ss_pred ---------HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh
Q 013839 160 ---------WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS----AHNPTGVDPTEEQWREISYQFKV 226 (435)
Q Consensus 160 ---------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~----p~NPtG~~~~~~~l~~i~~~~~~ 226 (435)
++..|++++.++. .+++.+|++++++++++. +++++|++++ |+||||. ..++++|+++|++
T Consensus 135 ~~~~~~~~~l~~~G~~~~~v~~--~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~---i~dl~~i~~la~~ 208 (427)
T 3i16_A 135 ITENSNMGSLKEFGINYKQVDL--KEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALL---IEDIKSIVDCVKN 208 (427)
T ss_dssp CSCCCSSCCTGGGTCEEEECCC--CTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCC---HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHcCCEEEEecC--ccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCccc---HHHHHHHHHHHHH
Confidence 3567888888887 234679999999999742 3689999988 8888875 5789999999999
Q ss_pred --cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 227 --KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 227 --~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
+|+++++|++|..+.+.. . +. . ...+++++|+||.+|.+| .+.||+++ +++ ++++++...
T Consensus 209 ~~~g~~livD~a~~~~~~~~---~--p~----~-~gaDiv~~S~sK~lgg~g~~~gG~i~~---~~~----li~~l~~~~ 271 (427)
T 3i16_A 209 IRKDIICFVDNCYGEFMDTK---E--PT----D-VGADLIAGSLIKNIGGGIAPTGGYLAG---TKD----CIEKTSYRL 271 (427)
T ss_dssp HCTTSEEEEECTTTTTSSSS---C--GG----G-GTCSEEEEETTSGGGTTTCCSCEEEEE---CHH----HHHHHHHHH
T ss_pred hCCCCEEEEECCCccccccC---C--cc----c-cCCeEEEecCcccCCCCCCceEEEEEE---CHH----HHHHHHHhc
Confidence 999999999998776431 1 11 1 134689999999998665 56788864 888 777777643
Q ss_pred hccccC---CChhH-HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 304 RAMYGS---PPVHG-ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 304 ~~~~~~---~~~~~-q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
.....+ .+.+. ...+...+ +.+...+++..+++..+.+.|+++|.
T Consensus 272 ~~~~~g~~~~~~~~~a~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 272 TVPGIGGECGSTFGVVRSMYQGL----------FLAPHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp SCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCccCccCCccHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 221111 11121 22222222 33456778888899999999999984
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-23 Score=207.37 Aligned_cols=333 Identities=12% Similarity=0.052 Sum_probs=207.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...|||..|.....-|. .++.+++++.+++..+....| +.....+|.+.+++++.+ .+++. ++++|
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh-~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~--~~nSG 165 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGH-SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFPS-------IDLVR--FTNSG 165 (465)
Confidence 35678999988874222221 233444444455443322334 333455777777776621 34666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCC--CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQI--PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
++|+..+..+......+++|++.+++|.++...+. ..|. .++.++. .|++.|++.+++.++++++|+
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi 238 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAIL 238 (465)
Confidence 99999885433223455999999999987654332 1233 2222222 278889888875434677877
Q ss_pred eCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+...+|+||... +++.+++|.++|++||+++|+||+|. +..+. ......+ +...-+.||||.+| .|+|+
T Consensus 239 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~~----gv~pDi~t~sK~lg-~G~pi 308 (465)
T 2yky_A 239 VEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEML----GISADLTTLGKYIG-GGMSF 308 (465)
Confidence 766567799655 68889999999999999999999998 64321 1111111 11122458999999 49999
Q ss_pred cEEEEEecChhHHHHHHHHHHH-----HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQ-----IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
||+++ +++ +++.+.. .....+.+.+++++.++.+.|+.-. + +...+++.++.+++.+.|+
T Consensus 309 G~v~~---~~~----i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~------~--~~~~~~~~~~~~~l~~~L~ 373 (465)
T 2yky_A 309 GAFGG---RRD----LMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY------T--RQAASDLSASGDRFRANLN 373 (465)
Confidence 99964 777 7776665 1233456777888888777775321 1 2345556666666666665
Q ss_pred hhCCCCCccccccCcceeEecCCC------------------HHHHHHHhhhccEEEeCCC--cEEeccCCCCcHHHHHH
Q 013839 355 KLGSSLNWEHITNQLGMFCFSGLT------------------PYQVDRLAKEFHIYMTQDG--RISMAGVTTGNVNYLAN 414 (435)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~~~ll~~~gI~i~pgg--Ris~~~~~~e~i~~~~~ 414 (435)
++.....+....+..|.++|+.+. .+++..++ ++||.+.|++ -+++. .++++++++++
T Consensus 374 ~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~~~~~s~~-~t~edid~~l~ 451 (465)
T 2yky_A 374 RIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRGMYALSLE-IADAGRDAFAE 451 (465)
Confidence 542100111112334555555331 12335554 6899999876 35654 38999999999
Q ss_pred HHHHHHHhhh
Q 013839 415 AIHEVTRSEQ 424 (435)
Q Consensus 415 ~l~~~l~~~~ 424 (435)
+|.++++++.
T Consensus 452 ~l~~~l~~~~ 461 (465)
T 2yky_A 452 ALADFIGEQR 461 (465)
Confidence 9999987653
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=180.85 Aligned_cols=157 Identities=14% Similarity=0.024 Sum_probs=125.1
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~ 168 (435)
...++++.+++++... +.+ ++.+|++|+.++ +..++.+||+|+++.++|..+...+ +..|++++
T Consensus 59 ~~~~l~~~la~~~g~~-------~~v---~~~sGt~A~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGK-------AAL---ATASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVR 126 (421)
T ss_dssp HHHHHHHHHHHHHTCS-------EEE---EESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCC-------ceE---EecCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEE
Confidence 3578999999998332 123 467779999888 6666889999999999998877654 67898888
Q ss_pred ee-eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 169 TY-HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 169 ~v-~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
.+ +. .|+++++++++ +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|..+.+..
T Consensus 127 ~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~--- 190 (421)
T 2ctz_A 127 FTSRE-------ERPEEFLALTD---EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL--- 190 (421)
T ss_dssp ECCTT-------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC---
T ss_pred EECCC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccC---
Confidence 88 64 17899999997 67899999999999999988 6799999999999999999983343321
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
. ++ . ...++++.|+||.++.+|.|+|++++
T Consensus 191 ~--~~----~-~~~Di~~~s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 191 R--PL----A-WGAALVTHSLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp C--GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred C--cc----c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence 1 11 1 13468899999999989999999974
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=179.30 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=162.2
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe---cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH--
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ---ALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI-- 159 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~---t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~-- 159 (435)
+.|+. .|...|++.+++++ +.. ... + +.+|++|+.++ +.++++|||+|++++ |.|..+...
T Consensus 69 y~Y~~-~g~~~Le~~lA~l~-g~e-------~al--v~p~~~sGt~A~~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g 135 (427)
T 3hvy_A 69 YGYND-IGRDSLDRVYANIF-NTE-------SAF--VRPHFVNGTHAIGAA--LFGNLRPNDTMMSICGMPYDTLHDIIG 135 (427)
T ss_dssp TCTTC-HHHHHHHHHHHHHH-TCS-------EEE--EETTCCSHHHHHHHH--HHHTCCTTCEEEECSSSCCGGGHHHHT
T ss_pred CCCCc-hhHHHHHHHHHHHh-CCC-------ceE--EeCCCCcHHHHHHHH--HHHhcCCCCEEEEeCCCCchhHHHHhc
Confidence 44544 36788999999987 331 222 4 78999998887 788899999999999 999888743
Q ss_pred ---------HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh
Q 013839 160 ---------WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS----AHNPTGVDPTEEQWREISYQFKV 226 (435)
Q Consensus 160 ---------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~----p~NPtG~~~~~~~l~~i~~~~~~ 226 (435)
++..|++++.++. +++.+|++++++++++. +++++|++++ |+||||. ..++++|+++|++
T Consensus 136 ~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~---v~dl~~i~~ia~~ 208 (427)
T 3hvy_A 136 MDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLR---IAEIAEIIKSIRE 208 (427)
T ss_dssp CCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCC---HHHHHHHHHHHHH
T ss_pred cccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCcccc---HHHHHHHHHHHHH
Confidence 4567888888876 35689999999999742 3689999988 8888875 5789999999999
Q ss_pred --cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 227 --KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 227 --~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
+|+++|+|++|..+.+... +. . ...+++++|+||.+|.+| .+.||+++ +++ +++.++...
T Consensus 209 ~~~g~~livD~a~~~~~~~~~-----p~----~-~gaDiv~~S~sK~lgg~g~~~GG~i~~---~~~----li~~l~~~~ 271 (427)
T 3hvy_A 209 VNENVIVFVDNCYGEFVEEKE-----PT----D-VGADIIAGSLIKNIGGGIATTGGYIAG---KEE----YVTQATFRV 271 (427)
T ss_dssp HCSSSEEEEECTTCTTTSSSC-----GG----G-GTCSEEEEETTSGGGTTTCCSCEEEEE---CHH----HHHHHHHHH
T ss_pred hCCCCEEEEECCccccccCCC-----Cc----c-cCCeEEEECCcccccccccceEEEEEE---CHH----HHHHHHHHh
Confidence 8999999999987764321 11 1 134689999999998555 44577753 888 777777643
Q ss_pred hcccc----CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 304 RAMYG----SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 304 ~~~~~----~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
..... +++......+...+ ......+++..+++..+.+.|+++|.
T Consensus 272 ~~~~~g~~~~~~~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3hvy_A 272 TVPGIGGECGSTFGVMRSLYEGL----------FMAPHVTIEAVKGAVFCARIMELAGF 320 (427)
T ss_dssp SCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCcccccCCCHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22111 12111122222222 33456677888888999999999884
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=187.85 Aligned_cols=317 Identities=12% Similarity=0.083 Sum_probs=202.5
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh-------
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF------- 140 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~------- 140 (435)
....+++....+.....|....+..++.+++.+++ .+... .++++. ++.||++|+.++. ....
T Consensus 107 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~---~~~~~~--~t~ggtea~~~al--~~~~~~~~~~~ 179 (504)
T 2okj_A 107 GLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSS---KDGDGI--FSPGGAISNMYSI--MAARYKYFPEV 179 (504)
T ss_dssp HHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCS---SSCEEE--EESSHHHHHHHHH--HHHHHHHCTTH
T ss_pred HHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCC---CCCCEE--EeCCcHHHHHHHH--HHHHHHHhhHH
Confidence 33344455443333445766666566666664444 23321 134566 8999999998884 3322
Q ss_pred -CCC-----C-EEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCC
Q 013839 141 -HPE-----S-HIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNP 207 (435)
Q Consensus 141 -~~g-----d-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NP 207 (435)
.+| + +|+++.++|..+...++..|. +++.+|. ++++.+|+++|++++.+. ..++++|++++|+||
T Consensus 180 ~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~ 257 (504)
T 2okj_A 180 KTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTV 257 (504)
T ss_dssp HHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSS
T ss_pred hhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCC
Confidence 256 6 789999999999888888876 7888887 346899999999999742 125889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+.+ +++|.++|++||+++++|++|..+...... .... +.+.....+++.+++|.++.| .++|++++ .
T Consensus 258 tG~i~~---l~~I~~la~~~g~~lhvD~a~~~~~~~~~~-~~~~---~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~--~ 327 (504)
T 2okj_A 258 YGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRK-HRHK---LNGIERANSVTWNPHKMMGVL-LQCSAILV--K 327 (504)
T ss_dssp SCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTT-TGGG---GTTGGGCSEEEECTTSTTCCC-SCCEEEEE--S
T ss_pred CCCcCC---HHHHHHHHHHcCCEEEEehhhhhHHHhCHh-hHhh---cCCcccCCEEEECchhhcCCC-cceEEEEE--E
Confidence 998754 669999999999999999999877643110 0011 111113346788999999855 68999963 3
Q ss_pred ChhHHHHHHHHHHHH-hhcccc--------------------CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 288 DSKQAAAIRSQIQQI-ARAMYG--------------------SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~-~~~~~~--------------------~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
+++ +....... ..+... ....+.+.++..++.. +.+++..++..+++
T Consensus 328 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~--------~g~~~~~~~~~~~a 395 (504)
T 2okj_A 328 EKG----ILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT--------VGFENQINKCLELA 395 (504)
T ss_dssp STT----HHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred CHH----HHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH--------HHHHHHHHHHHHHH
Confidence 555 43322211 111100 0123444444444431 44667778888899
Q ss_pred HHHHHHHHhhCCCCCccccc---cCcceeEecCCC-------------------H-HHHHHHhhhccE-EEeC----C--
Q 013839 347 TTLRQNLEKLGSSLNWEHIT---NQLGMFCFSGLT-------------------P-YQVDRLAKEFHI-YMTQ----D-- 396 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~---~~~g~~~~~~~~-------------------~-~~~~~ll~~~gI-~i~p----g-- 396 (435)
+++.+.|++++. +.+.. +..+++.|.... . +..+.++ +.|+ .+.+ +
T Consensus 396 ~~l~~~L~~~~~---~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~~~~~~ 471 (504)
T 2okj_A 396 EYLYAKIKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQPQGDKA 471 (504)
T ss_dssp HHHHHHHTTCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSCEEEEEEETTEE
T ss_pred HHHHHHHhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcEEEEeeEECCce
Confidence 999999987632 44443 666766664211 1 2334554 5674 3331 2
Q ss_pred C--cEEecc--CCCCcHHHHHHHHHHHHHh
Q 013839 397 G--RISMAG--VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 g--Ris~~~--~~~e~i~~~~~~l~~~l~~ 422 (435)
+ |+++++ .+++++++++++|++++++
T Consensus 472 ~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 472 NFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 898862 3788899999999887754
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=185.85 Aligned_cols=337 Identities=13% Similarity=0.122 Sum_probs=194.9
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCC---cc---cHHHH----HHHHHhH
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISA---SV---STKMV----EESVKLV 105 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~---~g---~~~lr----~~ia~~l 105 (435)
++..+++-...+ .+.|.|-.++ + + +++.+.+++.. +.+....+|+.. .| ..++. +.+++++
T Consensus 42 ~~~~~~~e~~rq-~~~i~lias~----n--~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~ 113 (490)
T 2a7v_A 42 MWELLQREKDRQ-CRGLELIASE----N--F-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAF 113 (490)
T ss_dssp HHHHHHHHHHHH-HHSEECCTTC----C--C-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCceEECCC----C--C-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHc
Confidence 555554433222 2667777655 2 2 34444545444 333222234321 12 23454 5555555
Q ss_pred cCCCCccccCCCe-eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH--------HHhhCCC--CeeeeeecC
Q 013839 106 YGKDSDVVKEGRS-AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN--------IWRDAQI--PERTYHYYD 174 (435)
Q Consensus 106 ~~~~~~~~~~~~v-~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~ 174 (435)
+... ++. ..+++.+|++|+..+ +.++++|||+|+++++.|.++.. .+...|. +++.+++ +
T Consensus 114 -g~~~-----~~~~~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v-d 184 (490)
T 2a7v_A 114 -DLDP-----AQWGVNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-N 184 (490)
T ss_dssp -TCCT-----TTEEEECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCB-C
T ss_pred -CCCc-----ccCceEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc-c
Confidence 4431 122 112466899998888 88889999999999998865421 2234454 3445555 3
Q ss_pred CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHH
Q 013839 175 PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIR 253 (435)
Q Consensus 175 ~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~ 253 (435)
++++.+|++++++.+.+ .++++++++.++||+. . ++++|.++|++||+++++|+++. ++...+... .++
T Consensus 185 ~~~~~iD~d~le~~l~~--~~~klIi~~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~- 254 (490)
T 2a7v_A 185 PKTGLIDYNQLALTARL--FRPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPF- 254 (490)
T ss_dssp TTTCSBCHHHHHHHHHH--HCCSEEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGG-
T ss_pred cccCCcCHHHHHHHHhh--cCCcEEEEcCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCCcCC--CCC-
Confidence 45678999999999863 2467888888999863 2 47799999999999999999942 333222111 111
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecCh--------------hHHHHHHHHHHHHhhccc-cCCChhHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS--------------KQAAAIRSQIQQIARAMY-GSPPVHGILLV 318 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~-~~~~~~~q~~~ 318 (435)
+ ...+++.|+||++ .|+|.|++++ ++. + +.+.+++...... .+++.....++
T Consensus 255 ---~--~aDiv~~S~hK~l--~Gp~GG~i~~--~~~~~~~~~~~~~~~~~~----l~~~i~~~~~~g~qggp~~~~iaAl 321 (490)
T 2a7v_A 255 ---K--HADIVTTTTHKTL--RGARSGLIFY--RKGVKAVDPKTGREIPYT----FEDRINFAVFPSLQGGPHNHAIAAV 321 (490)
T ss_dssp ---G--TCSEEEEESSGGG--CSCSCEEEEE--ECSEEEEETTTEEEEECC----CHHHHHHHHTTTTCCSCCHHHHHHH
T ss_pred ---C--CCCEEEECCcccC--ccccchheee--ccchhcccccccchhhHH----HHHHHHHHhcccCCCCchHHHHHHH
Confidence 1 2358889999997 4678899864 232 3 4555655443322 33444444444
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecC-----CCHHHHHHHhhhccEE
Q 013839 319 ATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSG-----LTPYQVDRLAKEFHIY 392 (435)
Q Consensus 319 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~-----~~~~~~~~ll~~~gI~ 392 (435)
+.++... ..+..+++.+++.++++++.+.|.+.|+ .+.. .....++|+. ++.+.+.+.|++.||.
T Consensus 322 a~Al~~~-----~~~~~~~~~~~~~~na~~L~~~L~~~G~----~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~ 392 (490)
T 2a7v_A 322 AVALKQA-----CTPMFREYSLQVLKNARAMADALLERGY----SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 392 (490)
T ss_dssp HHHHHHH-----HSHHHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEE
T ss_pred HHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHcCc----EEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeE
Confidence 4444321 1133467788889999999999998874 4443 2234456663 3567777778889999
Q ss_pred EeC----C--------C-cEEec-----cCCCCcHHHHHHHHHHHHHh
Q 013839 393 MTQ----D--------G-RISMA-----GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 393 i~p----g--------g-Ris~~-----~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.+ + | ||+.. +.++++++++.+.|.+++..
T Consensus 393 v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 393 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 973 2 1 77542 24789999999999988863
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-21 Score=188.39 Aligned_cols=343 Identities=10% Similarity=-0.004 Sum_probs=208.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.+...-| ..++++++++.+++.. .....|+. ....++++.+++.+..... ...+++. ++
T Consensus 60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~--f~ 133 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLI--TM 133 (472)
T ss_dssp TTSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEE--EE
T ss_pred CCCCEEEECCCCHhhcccC-CCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEE--Ee
Confidence 3568899999998622222 2244455544444321 11112333 3356899999996633211 1145777 99
Q ss_pred CCchhHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCChhhHHHH-hhCCCCe---------
Q 013839 124 LSGTGACRLFAEFQRRF------H-----------------PE---SHIYFPDPTWSNHHNIW-RDAQIPE--------- 167 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~------~-----------------~g---d~Vlv~~p~y~~~~~~~-~~~g~~~--------- 167 (435)
+||++|+..++.+.... . || ++|++.+++|.++.... ...|...
T Consensus 134 ~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~ 213 (472)
T 1ohv_A 134 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF 213 (472)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC
T ss_pred CCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence 99999999996443211 1 46 89999999998775433 3333211
Q ss_pred ----eeeeecC-C--CC--C-----CcChHhHHHHhhcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCc
Q 013839 168 ----RTYHYYD-P--DS--K-----SLDFAALMDDIKNAP---DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGH 229 (435)
Q Consensus 168 ----~~v~~~~-~--~~--~-----~~d~e~l~~~i~~~~---~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~ 229 (435)
+.+|... + .. + ..|+++|++.+++.. .++++|+++..+|+||. ..+++.+++|.++|++||+
T Consensus 214 ~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 293 (472)
T 1ohv_A 214 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 293 (472)
T ss_dssp CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC
T ss_pred CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 1222100 0 00 0 126888998887421 16888888878889997 4689999999999999999
Q ss_pred eeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccC
Q 013839 230 FPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGS 309 (435)
Q Consensus 230 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (435)
++|+||+|.+++..+. ......+ +.. ...-+.||||.+ +.| ||++ +++ +. .+.......+.+
T Consensus 294 lli~DEv~~g~g~~g~---~~~~~~~-gv~-~~~Di~t~sK~~-l~G---G~~~----~~~----~~-~~~~~~~~~T~~ 355 (472)
T 1ohv_A 294 AFLVDEVQTGGGSTGK---FWAHEHW-GLD-DPADVMTFSKKM-MTG---GFFH----KEE----FR-PNAPYRIFNTWL 355 (472)
T ss_dssp EEEEECTTTTTTTTSS---SSGGGGG-CCS-SCCSEEEECGGG-SSE---EEEE----CGG----GS-CSSSSSSCCSSS
T ss_pred EEEEeCcccCCCCCCC---chhcccc-CCC-CCCCEEEEcccc-ccC---CccC----chh----hc-ccccccccCccC
Confidence 9999999987765431 1122111 110 001234899995 345 6763 555 42 122222244556
Q ss_pred CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCCC-----HHHH
Q 013839 310 PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGLT-----PYQV 382 (435)
Q Consensus 310 ~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~~-----~~~~ 382 (435)
.+.+++.++.++|+.-. + ....++++++++++.+.|+++ +.+..+....+.+. +.++.+. .+++
T Consensus 356 ~~~~~~aaa~aal~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~ 426 (472)
T 1ohv_A 356 GDPSKNLLLAEVINIIK------R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT-FCSFDTPDESIRNKLI 426 (472)
T ss_dssp SCHHHHHHHHHHHHHHH------H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT-EEEEECSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce-EEEEEeCChhHHHHHH
Confidence 77888888877774211 1 235677777888888888765 22211222445544 4444442 2344
Q ss_pred HHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 383 DRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 383 ~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..++ ++||.+.|+| ||+++ ..+++++++++++|+++++++
T Consensus 427 ~~l~-~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 427 SIAR-NKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHH-HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-HCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6665 5899999874 88654 238899999999999988653
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=185.32 Aligned_cols=322 Identities=12% Similarity=0.072 Sum_probs=204.5
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC--------
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH-------- 141 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~-------- 141 (435)
+..+.+++....+.....|....+..++.+++++++....+.+..++.++ ++.||++|+..+. .+...
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~--~t~ggt~a~~~al--~~a~~~~~~~~~~ 184 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGI--FSPGGAISNMYSI--MAARYKYFPEVKT 184 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEE--EESSHHHHHHHHH--HHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceE--ECCchHHHHHHHH--HHHHHHhhhhhhh
Confidence 33444444444333356788888889999999888732211111123555 8999999987773 33322
Q ss_pred ------CCCEEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCC
Q 013839 142 ------PESHIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 142 ------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG 209 (435)
+++.|+++.+.|..+...++..|+ +++.++. ++++.+|+++|++++.+. ...++++++++++||||
T Consensus 185 ~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~--d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G 262 (511)
T 3vp6_A 185 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 262 (511)
T ss_dssp HCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSC
T ss_pred cCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec--CCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCc
Confidence 567999999999999999999998 7888887 345899999999999742 12278999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+ +++++|+++|++||+++++|++|........ .. .. .+.+...-++++.+.+|.++.| ..+|+++ .+++
T Consensus 263 ~v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~--~~-~~-~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~--~~~~ 332 (511)
T 3vp6_A 263 AF---DPIQEIADICEKYNLWLHVDAAWGGGLLMSR--KH-RH-KLNGIERANSVTWNPHKMMGVL-LQCSAIL--VKEK 332 (511)
T ss_dssp CB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCT--TT-GG-GGTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESST
T ss_pred cc---ccHHHHHHHHHHcCCEEEEEccchhhHhhCh--hh-hh-hccCCccCCEEEECcccccCCC-cCeEEEE--EeCH
Confidence 97 4577999999999999999999876543210 00 00 0111123356678999998755 6678886 3465
Q ss_pred hHHHHHHHHHHHHhh-ccc-----------------c---CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 290 KQAAAIRSQIQQIAR-AMY-----------------G---SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~-~~~-----------------~---~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
+ +......... +.. . ....+...++...+. .+.+++..++..++.++
T Consensus 333 ~----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~~~~~a~~ 400 (511)
T 3vp6_A 333 G----ILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEY 400 (511)
T ss_dssp T----HHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHH
Confidence 5 4333321110 100 0 012232333333332 15577888889999999
Q ss_pred HHHHHHhhCCCCCccccc---cCcceeEec----CCC---------------HHHH-HHHhhhccEEEeC-----CC---
Q 013839 349 LRQNLEKLGSSLNWEHIT---NQLGMFCFS----GLT---------------PYQV-DRLAKEFHIYMTQ-----DG--- 397 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~---~~~g~~~~~----~~~---------------~~~~-~~ll~~~gI~i~p-----gg--- 397 (435)
+.+.|++.+. +.... +..+.+.|. +++ ...+ +.| .+.|+.+.. ++
T Consensus 401 l~~~L~~~pg---~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L-~~~G~~~~~~~~~~~~~~~ 476 (511)
T 3vp6_A 401 LYAKIKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALM-MESGTTMVGYQPQGDKANF 476 (511)
T ss_dssp HHHHHHSCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHH-HHHTSCEEEEEEETTEEEE
T ss_pred HHHHHhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHH-HhcCCEEEEEEEeCCceEE
Confidence 9999987632 44443 555555542 110 1134 444 456754432 22
Q ss_pred -cEEecc--CCCCcHHHHHHHHHHHHHhh
Q 013839 398 -RISMAG--VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 -Ris~~~--~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+++++ .+.++++.++++|+++-+.+
T Consensus 477 lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 477 FRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 888743 36788999988888765443
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-19 Score=173.54 Aligned_cols=272 Identities=12% Similarity=0.057 Sum_probs=170.8
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-------hC
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-------FH 141 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-------~~ 141 (435)
+++.++.+...+.. ..|.+..+..++++++++++... +.+ ++.+|++|+.++ +.++ +.
T Consensus 14 ~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i--~~~sGt~a~~~a--l~~~~~~~~~~~~ 78 (390)
T 3b8x_A 14 DDLEYKAIQSVLDS---KMFTMGEYVKQYETQFAKTFGSK--------YAV--MVSSGSTANLLM--IAALFFTKKPRLK 78 (390)
T ss_dssp CHHHHHHHHHHHHH---TCCSSCHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHTTSSSSCSCC
T ss_pred CHHHHHHHHHHHHc---CCCCCChHHHHHHHHHHHHHCCC--------cEE--EECCHHHHHHHH--HHHHHhhhhcCCC
Confidence 33444444444432 23566788899999999998322 233 688889998888 6665 67
Q ss_pred CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 142 PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 142 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
+||+|+++.|+|..+...++..|++++.++. +++++.+|+++|+++++ ++++++++++ ++|.. .++++|.
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~~---~~g~~---~~~~~i~ 148 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDI-DINTLNIDIESLKEAVT---DSTKAILTVN---LLGNP---NNFDEIN 148 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHCC---TTEEEEEEEC---GGGCC---CCHHHHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEec-CccccCcCHHHHHHHhC---cCCeEEEEEC---CccCh---hhHHHHH
Confidence 8999999999999999999999999999988 34458899999999997 5788888753 44443 4677999
Q ss_pred HHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe--cccccccccCCcccEEEEEecChhHHHHHHHHH
Q 013839 222 YQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ--SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI 299 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l 299 (435)
++|++||+++|+|++|......+. ..+ +. ..++... ..+|.++ +| +.|+++ +++++ +.+.+
T Consensus 149 ~l~~~~~~~li~D~a~~~g~~~~~-------~~~-g~-~~~~~~~s~~~~k~~~-~g-~gG~~~--~~~~~----l~~~~ 211 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESMGATFNN-------KCA-GT-FGLMGTFSSFYSNHIA-TM-EGGCIV--TDDEE----IYHIL 211 (390)
T ss_dssp HHHTTSCCEEEEECTTCTTCEETT-------EET-TS-SSSEEEEECCTTSSSC-SS-SCEEEE--ESCHH----HHHHH
T ss_pred HHHHHcCCEEEEECcCcccCEECC-------ccc-cc-ccceEEEEccCCCCCc-cC-CceEEE--eCCHH----HHHHH
Confidence 999999999999999874321111 011 11 1122222 2345553 33 347885 43445 55545
Q ss_pred HHHhhccc---------------------------cC----CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 300 QQIARAMY---------------------------GS----PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 300 ~~~~~~~~---------------------------~~----~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
+......+ .+ .+.+...++...+ +.+++..++.++++++
T Consensus 212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~ 281 (390)
T 3b8x_A 212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----------KKLPRFISVRRKNAEY 281 (390)
T ss_dssp HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 44321110 01 3333322222222 3455677778888888
Q ss_pred HHHHHHhhCCCCCcccccc--Cccee-Eec------CCCHHHHHHHhhhccEEEeC
Q 013839 349 LRQNLEKLGSSLNWEHITN--QLGMF-CFS------GLTPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~~--~~g~~-~~~------~~~~~~~~~ll~~~gI~i~p 395 (435)
+.+.|++++. +....+ ..+++ .++ +.+.+.+.+.|+++||.+.+
T Consensus 282 l~~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~ 334 (390)
T 3b8x_A 282 FLDKFKDHPY---LDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP 334 (390)
T ss_dssp HHHHHTTCSS---EEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred HHHHhcCCCC---cccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence 9999887631 333322 23332 222 24566665555678998875
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=181.76 Aligned_cols=318 Identities=13% Similarity=0.056 Sum_probs=197.3
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHH----HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--Hh--
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEE----SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RF-- 140 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~----ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~-- 140 (435)
++.++.++.....+.....|....+..++.+. +++++ +... .++++ +|+||++|+.+++.... .+
T Consensus 113 ~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~-g~~~----~~~~~--~t~ggt~a~~~al~~ar~~~~~~ 185 (497)
T 2qma_A 113 MPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKY-DLSE----KADGI--FTSGGTQSNQMGLMLARDWIADK 185 (497)
T ss_dssp HHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHT-TCCT----TCEEE--EESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHh-CCCC----CCCeE--EcCCchHHHHHHHHHHHHHHHHh
Confidence 33444444444433334446555555666666 44444 3221 24666 89999999988853211 12
Q ss_pred -------CC------CC-EEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEE
Q 013839 141 -------HP------ES-HIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLL 200 (435)
Q Consensus 141 -------~~------gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~ 200 (435)
.+ || .|+++.+.|..+...++..|. +++.+|. ++++.+|+++|++++.+. ..++.+++
T Consensus 186 ~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~~vv 263 (497)
T 2qma_A 186 LSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA--NADGTMDITKLDEVIAQAKAEGLIPFAIV 263 (497)
T ss_dssp HHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSSBCGGGHHHHHHHHHHTTCEEEEEE
T ss_pred hcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec--CCCCcCCHHHHHHHHHHHHHCCCcceEEE
Confidence 12 46 799999999888888888876 7888887 346889999999999742 11244888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH-hhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI-FLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++++||||..- ++++|.++|++||+++++|++|..+.... + ... +.+....++++.|++|.++.| .++
T Consensus 264 ~~~~~~~tG~~~---~l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~---~~~~~~gi~~~D~i~~s~hK~l~~p-~~~ 333 (497)
T 2qma_A 264 GTAGTTDHGAID---DLDFIADMAVKHDMWMHVDGAYGGALILS---S---HKSRLKGVERAHSISVDFHKLFYQT-ISC 333 (497)
T ss_dssp EEBSCTTTCCBC---CHHHHHHHHHHHTCEEEEEETTGGGGGGS---T---TGGGGTTGGGCSEEEEETTTTTCCC-SSC
T ss_pred EcCCCCCCCCCC---CHHHHHHHHHHcCCEEEEehhhhHHHHhC---c---chHhhcCcccCCEEEEcchhccCCC-cce
Confidence 889999999864 46799999999999999999998776431 1 111 111113347788999998855 699
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccC----C-------------ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGS----P-------------PVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~-------------~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
|++++ +++. .++.+.....+.... + ..+.++++...+.. +.+++..++.
T Consensus 334 G~l~~--~~~~----~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~--------~g~~~~~~~~ 399 (497)
T 2qma_A 334 GALLV--NDKS----NFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP--------KALGDMYDHL 399 (497)
T ss_dssp EEEEE--SCGG----GGGGGCC--------------------CCSCCCTHHHHHHHHHHTCH--------HHHHHHHHHH
T ss_pred EEEEE--eCHH----HHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH--------HHHHHHHHHH
Confidence 99963 3554 222221100000000 0 12223333344431 4566777888
Q ss_pred HHHHHHHHHHHHhhCCCCCcccc-ccCcceeEec--CC--C----HHHHHHHhhhccEEEeCC----C----cEEec--c
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHI-TNQLGMFCFS--GL--T----PYQVDRLAKEFHIYMTQD----G----RISMA--G 403 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~--~~--~----~~~~~~ll~~~gI~i~pg----g----Ris~~--~ 403 (435)
.++++++.+.|++++. +.+. ++..+++.|. +. . .+.+...+.+.|+.+.++ | |++++ .
T Consensus 400 ~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~ 476 (497)
T 2qma_A 400 LAQTLEVADMIRTNDQ---FELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPC 476 (497)
T ss_dssp HHHHHHHHHHHHTCTT---EEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHHHHHHHHHhhCCC---eEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCC
Confidence 8899999999987632 4443 4556544443 11 1 122323334578887652 2 99873 2
Q ss_pred CCCCcHHHHHHHHHHHHHh
Q 013839 404 VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~ 422 (435)
.+++++++++++|++++++
T Consensus 477 ~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 477 LTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3789999999999988765
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=182.34 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=187.4
Q ss_pred CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-HhhCCCCe
Q 013839 89 ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WRDAQIPE 167 (435)
Q Consensus 89 ~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~ 167 (435)
.+..-..++++.+|+++ +.+ ..+. +++|+++|+.++ +.+++.+||+|+++.|+|..+... ++..|+++
T Consensus 170 ~~~~~i~e~e~~lA~~~-gae------~~i~--v~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~ 238 (730)
T 1c4k_A 170 IHEGPAVAAEKHAARVY-NAD------KTYF--VLGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238 (730)
T ss_dssp TTBTHHHHHHHHHHHHT-TCS------EEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred CChHHHHHHHHHHHHHH-CCC------cEEE--ECCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEE
Confidence 34344678888888887 442 2344 677778998888 788899999999999999888877 88899999
Q ss_pred eeeeecCCCCCC----cChHhH-----HHHhhcCCCC---c----EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 168 RTYHYYDPDSKS----LDFAAL-----MDDIKNAPDS---S----FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 168 ~~v~~~~~~~~~----~d~e~l-----~~~i~~~~~~---~----~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
+.++.. .++++ +|+++| ++++.+..++ + +++++++| ||+|.+.+ +++|+++|++|++++
T Consensus 239 v~v~~~-~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 239 VYLQTN-RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYI 313 (730)
T ss_dssp EEECEE-ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred EEEeCC-ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeE
Confidence 888763 22333 789998 8888742101 3 78888888 68998865 669999999999999
Q ss_pred eeeccCCCc-cCCCCcccHHHHHH-hhhc-CCeEEEEecccccccccCCcccEEEEEecChhHHH--HH--HHHHHHHhh
Q 013839 232 FFDMAYQGF-ASGDLDKDAQAIRI-FLED-EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAA--AI--RSQIQQIAR 304 (435)
Q Consensus 232 i~Deay~~~-~~~~~~~~~~~~~~-~~~~-~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~--~~--~~~l~~~~~ 304 (435)
++|++|... .+++......++.. ..+. ..+++++.|+||.+ +|.+.|+++. .+++.... .. ...+.....
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~-v~~~~l~g~~~~i~~~~~~~~~~ 390 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIH-KKDSHIKGQLRYCDHKHFNNSFN 390 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEE-EECGGGTTSTTCCCHHHHHHHHH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEE-ecchhhcCcccccCHHHHHHHHH
Confidence 999998642 33310000001100 0011 23679999999985 5666665542 32432100 00 112222211
Q ss_pred -ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccccC--------------
Q 013839 305 -AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHITNQ-------------- 368 (435)
Q Consensus 305 -~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~-------------- 368 (435)
....+++.....++..++..-. .+.-.+..+++.++.+.+++.|++ +.. +.+..+.
T Consensus 391 ~~~stsp~~~~iaal~aA~~~l~-----~~~g~~~~~~~~~~a~~lr~~L~~~i~g---~~v~~p~~~~~~~~~~~~~~~ 462 (730)
T 1c4k_A 391 LFMSTSPFYPMYAALDVNAAMQE-----GEAGRKLWHDLLITTIEARKKLIKAGSM---FRPFVPPVVNGKKWEDGDTED 462 (730)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHTTCS---SEESSCSEETTEEGGGSCHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHhhhCCC---eEEcccccccccccccccccc
Confidence 1123344443333333332111 012244556677777778888876 321 1221110
Q ss_pred -----------------------cc-ee-----Eec---------------CCCHHHHHHHhhhccEEEeCCC----cEE
Q 013839 369 -----------------------LG-MF-----CFS---------------GLTPYQVDRLAKEFHIYMTQDG----RIS 400 (435)
Q Consensus 369 -----------------------~g-~~-----~~~---------------~~~~~~~~~ll~~~gI~i~pgg----Ris 400 (435)
.+ ++ +.+ +++...+.+.|+++||.+.+.+ |++
T Consensus 463 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~ 542 (730)
T 1c4k_A 463 MANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFL 542 (730)
T ss_dssp HTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEE
T ss_pred ccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEE
Confidence 11 11 111 2455666656667899997754 666
Q ss_pred ecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 401 MAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 401 ~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
++. .+.++++.++++|+++.+..
T Consensus 543 ~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 543 MTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhc
Confidence 532 37789999999999987654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=178.41 Aligned_cols=331 Identities=11% Similarity=0.050 Sum_probs=201.5
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-----CCeeeEecCCchhHHHHHHHHHH-H----
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-----GRSAGVQALSGTGACRLFAEFQR-R---- 139 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-----~~v~~~~t~gg~~a~~~~~~~~~-~---- 139 (435)
+..+.+++....+.....|....+..++.+.+++++....+.+... ..-.+++|.||++|+.++..... .
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 3444555554444435568888888899999988873222111000 00123479999999877642221 0
Q ss_pred ------------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCC
Q 013839 140 ------------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSA 204 (435)
Q Consensus 140 ------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p 204 (435)
+.++++|+++.++|..+...++..|++++.+|. + +++ +|+++|++++.+. ...+.+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~-d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQS-E-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECC-B-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEEC-C-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 113478999999999999999999999999998 3 456 9999999999742 122677888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
+|+||.+ +++++|+++|++||+++++|++|........ ..... .......+.+..+.+|.++.| ..+|++.
T Consensus 244 ~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~--~~~~~--~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~- 314 (475)
T 3k40_A 244 TTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFICP--EYRHL--MKGIESADSFNFNPHKWMLVN-FDCSAMW- 314 (475)
T ss_dssp CTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSG--GGGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEE-
T ss_pred CCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhCH--hhHHH--hcCcccCCEEEECchhccCCC-CceEEEE-
Confidence 9999987 4577999999999999999999876433210 01010 111112356778999987744 5577775
Q ss_pred EecChhHHHHHHHHHHHHhhc------------cccCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 285 LCVDSKQAAAIRSQIQQIARA------------MYGSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~------------~~~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
..+++.+.+.......+... ...+. ..+.++++...+. .+.+++..++..++++++
T Consensus 315 -~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~a~~l 385 (475)
T 3k40_A 315 -LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNFAKQF 385 (475)
T ss_dssp -ESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred -EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHH
Confidence 33554211111100000000 00000 1222333333332 145677888899999999
Q ss_pred HHHHHhhCCCCCcccccc-CcceeEec--CC---CHHHHHHHhhhccEEEeCC---C----cEEecc--CCCCcHHHHHH
Q 013839 350 RQNLEKLGSSLNWEHITN-QLGMFCFS--GL---TPYQVDRLAKEFHIYMTQD---G----RISMAG--VTTGNVNYLAN 414 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~-~~g~~~~~--~~---~~~~~~~ll~~~gI~i~pg---g----Ris~~~--~~~e~i~~~~~ 414 (435)
.+.|++++. +.+..+ ..+++.|. +. +.++.+++.++.++.+.|+ | |+++++ .++++++++++
T Consensus 386 ~~~L~~~~g---~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~ 462 (475)
T 3k40_A 386 GDLCVADSR---FELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462 (475)
T ss_dssp HHHHHHSTT---EEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHhcCCC---EEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHH
Confidence 999998742 455443 33333321 22 2334466655444444442 3 999764 26789999999
Q ss_pred HHHHHHHhhh
Q 013839 415 AIHEVTRSEQ 424 (435)
Q Consensus 415 ~l~~~l~~~~ 424 (435)
+|+++.+++.
T Consensus 463 ~i~~~~~~~~ 472 (475)
T 3k40_A 463 EVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-19 Score=173.32 Aligned_cols=274 Identities=12% Similarity=0.022 Sum_probs=169.4
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v 170 (435)
.++++.+++++ +.+ ++++. ++.|++.+.+.+.... .+.+||+|+++.|+|+.+...+ +..|++++.+
T Consensus 111 ~~~~~~la~~~-g~~-----~~~i~--~~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v 181 (438)
T 1wyu_A 111 FEYQTMIAELA-GLE-----IANAS--MYDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTL 181 (438)
T ss_dssp HHHHHHHHHHH-TSS-----EECSC--BSSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHh-CCC-----ccceE--EeCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEE
Confidence 46666677766 432 34666 7888885544442121 3579999999999999887655 4589999988
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. +++.+|+++ ++ ++++++++++| ||||.+.+ +++|.++|++||+++++|..-+.++.-. .
T Consensus 182 ~~---~~~~~d~~~----i~---~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~---~-- 242 (438)
T 1wyu_A 182 PL---EGGRTPLPE----VG---EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK---P-- 242 (438)
T ss_dssp CC---BTTBCCCCC----CC---TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC---C--
T ss_pred cC---cCCccCHHH----hC---CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC---C--
Confidence 76 235778777 44 57899999999 99999874 6799999999999999663211122111 1
Q ss_pred HHHHhhhcCCeEEEEecccccc----cccCCcccEEEEEecChhHHHHHHHHHHHH------------------------
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSM----GLYGHRVGCLSILCVDSKQAAAIRSQIQQI------------------------ 302 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~----g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~------------------------ 302 (435)
+ ..+ +..+++.| +|.| ++.|.|+||+++ +++ +++.+...
T Consensus 243 ~-~~~----g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~---~~~----~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~ 309 (438)
T 1wyu_A 243 P-GAY----GADIAVGD-GQSLGLPMGFGGPHFGFLAT---KKA----FVRQLPGRLVSETVDVEGRRGFILTLQAREQY 309 (438)
T ss_dssp H-HHH----TCSEEEEE-CTTTTCCCGGGCSCCEEEEE---CGG----GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHH
T ss_pred C-ccC----CCCEEEEC-CcccCCCccCCCCCeeEEEE---cHH----HHHhCCCceeccccccCCCcceeeeccccccc
Confidence 1 111 22345555 5544 466789999964 666 44433110
Q ss_pred hh--ccccCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeE--e
Q 013839 303 AR--AMYGSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFC--F 374 (435)
Q Consensus 303 ~~--~~~~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~--~ 374 (435)
.+ ..+.+. +.+...+++..+.... .+.+++..+++.++++++.+.|+++ | +.+..+. .+|. .
T Consensus 310 ~r~~~~t~~~~~~~~~~a~~aa~~l~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~-~~~~~~~ 379 (438)
T 1wyu_A 310 IRRAKAKSNITTNAQLTALMGAMYLAALG-----PEGLREVALKSVEMAHKLHALLLEVPG----VRPFTPK-PFFNEFA 379 (438)
T ss_dssp HHGGGSSCCCCSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTSTT----CEECSCS-SBCSEEE
T ss_pred cchhcccCCccchHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhcCCC----eEECCCC-CeEEEEE
Confidence 00 111222 1122211221132111 1446778888999999999999887 4 4444433 2332 1
Q ss_pred c--CCCHHHH-HHHhhhccEEE--eCC-----C--cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 375 S--GLTPYQV-DRLAKEFHIYM--TQD-----G--RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 375 ~--~~~~~~~-~~ll~~~gI~i--~pg-----g--Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
+ +.+.+.+ ..| .++||.+ .++ + |+++.. .+.+++++++++|++++
T Consensus 380 ~~~~~~~~~~~~~L-~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 380 LALPKDPEAVRRAL-AERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EECSSCHHHHHHHH-HHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHH-HHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 2 3354445 555 5679998 443 2 999863 27789999999988764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=177.54 Aligned_cols=324 Identities=13% Similarity=0.038 Sum_probs=204.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCcccc---CCCeeeEecCCchhHHHHHHHHHHH-----
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVK---EGRSAGVQALSGTGACRLFAEFQRR----- 139 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~---~~~v~~~~t~gg~~a~~~~~~~~~~----- 139 (435)
..+.+++....+.....|....+..++.+.+++++ ++.....+. ...-.+++|.||++|+..+.....-
T Consensus 93 ~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~ 172 (481)
T 4e1o_A 93 SLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILE 172 (481)
T ss_dssp HHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHH
Confidence 44455554444433566888888999999998887 333211000 0001234799999998877422110
Q ss_pred ------------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCC
Q 013839 140 ------------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSA 204 (435)
Q Consensus 140 ------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p 204 (435)
..++++|+++.++|..+...+...|.+++.+|. ++++.+|+++|++++++. ...+.+++.+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~ 250 (481)
T 4e1o_A 173 MKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVCATLG 250 (481)
T ss_dssp HHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 125789999999999999888888999999987 356899999999999742 122678888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+|+||.+ +++++|+++|++||+++++|++|........ ..+.. .+...-+.+..+.+|.++.| ..+|+++
T Consensus 251 ~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~-----~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~ 321 (481)
T 4e1o_A 251 TTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCP-----EFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFW 321 (481)
T ss_dssp CTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSG-----GGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEE
T ss_pred CCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhCh-----hhHHHhcCcccCCEEEEChHHhcCCC-CceEEEE
Confidence 9999976 4577999999999999999999876543211 11111 11112355678999998755 4467765
Q ss_pred EEecChhHHHHHHHH-HHHHhhcccc------------------CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 284 ILCVDSKQAAAIRSQ-IQQIARAMYG------------------SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~-l~~~~~~~~~------------------~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
..+++ .... +.....+... ....+.++++...+. .+.+++..++..+
T Consensus 322 --~~~~~----~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~g~~~~~~~~~~ 387 (481)
T 4e1o_A 322 --VKDKY----KLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VKNLQAHVRHGTE 387 (481)
T ss_dssp --ESBHH----HHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred --EeCHH----HHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence 33554 3221 1100000000 012333444444442 1456777888999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHHHHHHHhhhcc-EEEeCC---C----cEEecc--CCCCc
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPYQVDRLAKEFH-IYMTQD---G----RISMAG--VTTGN 408 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~ll~~~g-I~i~pg---g----Ris~~~--~~~e~ 408 (435)
+++++.+.|++++. +.+..+....++++.+ +.++.+++.+ .| +.+.|+ | |+++++ .++++
T Consensus 388 ~a~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~g~~~lR~~~~~~~tt~~d 463 (481)
T 4e1o_A 388 MAKYFESLVRNDPS---FEIPAKRHLGLVVFRLKGPNSLTENVLKEIAK-AGRLFLIPATIQDKLIIRFTVTSQFTTRDD 463 (481)
T ss_dssp HHHHHHHHHHTCTT---EECCSCCCSSEEEEEESSCHHHHHHHHHHHHH-HCSSBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHhcCCC---eEEecCCceeEEEEEeCCchHHHHHHHHHHHh-CCeEEEEeeEECCEEEEEEEeCCCCCCHHH
Confidence 99999999988742 4554433333444322 2234466654 56 444442 3 998754 25789
Q ss_pred HHHHHHHHHHHHHhh
Q 013839 409 VNYLANAIHEVTRSE 423 (435)
Q Consensus 409 i~~~~~~l~~~l~~~ 423 (435)
+++++++|+++.+++
T Consensus 464 i~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 464 ILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=174.67 Aligned_cols=321 Identities=13% Similarity=0.070 Sum_probs=196.9
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHH----HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-----hC
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEE----SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-----FH 141 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~----ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-----~~ 141 (435)
....+.+....+.....|....+..++.+. +++++ +.. ++++. ++.||++|+.++...... +.
T Consensus 123 ~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~-g~~-----~~~~~--~t~ggtea~~~al~~ar~~~~~~~~ 194 (515)
T 2jis_A 123 ALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALV-GWS-----SGDGI--FCPGGSISNMYAVNLARYQRYPDCK 194 (515)
T ss_dssp HHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHH-TCS-----SCEEE--EESSHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHh-CCC-----CCCeE--EcCCcHHHHHHHHHHHHHHHhhHHh
Confidence 333444444434434457666665555444 55555 332 34666 899999998777422210 12
Q ss_pred -CCC------EEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCC
Q 013839 142 -PES------HIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPT 208 (435)
Q Consensus 142 -~gd------~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPt 208 (435)
+|| +|+++.+.|+.+...++..|. +++.+|. ++++.+|+++|++++.+. ..++++|++++|+|||
T Consensus 195 ~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~t 272 (515)
T 2jis_A 195 QRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKA--DERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVL 272 (515)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred hcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEec--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCC
Confidence 575 899999999999888888888 8888887 346789999999999742 2258899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+.+ +++|.++|++||+++++|++|..+..... .... .+.+....++++.|++|.++.| .++|+++ +++
T Consensus 273 G~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~-~~~~---~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~--~~~ 342 (515)
T 2jis_A 273 GAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQ-THRH---LLDGIQRADSVAWNPHKLLAAG-LQCSALL--LQD 342 (515)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGG---GGTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESC
T ss_pred CCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhCh-hhHh---hcCCCccCCEEEECcccccCCC-CCeeEEE--EeC
Confidence 99865 66999999999999999999887765321 0000 1112223467889999998744 5789996 335
Q ss_pred h-hHHHHHHHHHHHHhh---c------ccc--------CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 289 S-KQAAAIRSQIQQIAR---A------MYG--------SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 289 ~-~~~~~~~~~l~~~~~---~------~~~--------~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+ +...........+.. . ... ....+.++++..++.. +.+++..++..++++++.
T Consensus 343 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~--------~g~~~~~~~~~~~a~~l~ 414 (515)
T 2jis_A 343 TSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGD--------QGLERRIDQAFVLARYLV 414 (515)
T ss_dssp CSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHH
Confidence 5 422221100111110 0 000 0112333344344421 446677788888999999
Q ss_pred HHHHhhCCCCCccccc-cCcceeEecCC--------C-HH----------HHHHHhhhccEEEe-----CC--C--cEEe
Q 013839 351 QNLEKLGSSLNWEHIT-NQLGMFCFSGL--------T-PY----------QVDRLAKEFHIYMT-----QD--G--RISM 401 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~-~~~g~~~~~~~--------~-~~----------~~~~ll~~~gI~i~-----pg--g--Ris~ 401 (435)
+.|++++. +.+.. +..+.+.|... + .+ .+...+.+.|+... ++ + |+++
T Consensus 415 ~~L~~~~g---~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~ 491 (515)
T 2jis_A 415 EEMKKREG---FELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVV 491 (515)
T ss_dssp HHHHTSTT---EEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEEC
T ss_pred HHHhcCCC---EEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEe
Confidence 99988632 44443 33454555211 1 11 13223345676442 22 1 9998
Q ss_pred c-c-CCCCcHHHHHHHHHHHHHh
Q 013839 402 A-G-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+ . .+++++++++++|++++++
T Consensus 492 ~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 492 ANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 4 2 3788999999999887653
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=177.06 Aligned_cols=172 Identities=11% Similarity=0.046 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
-..++++.+++.+ +.+ +.+. +++|+++|+..+ +.+++.|||+|+++.|+|..+...+...|++++.++.
T Consensus 206 ~v~~~ee~la~l~-G~d------~~i~--~~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~ 274 (755)
T 2vyc_A 206 AFGESEKYAARVF-GAD------RSWS--VVVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVP 274 (755)
T ss_dssp HHHHHHHHHHHHH-TCS------EEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECC
T ss_pred HHHHHHHHHHHHh-CCC------ceEE--ECCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence 3456666666666 542 2344 678888888888 7888999999999999999988888889999998876
Q ss_pred cCCCCCC----c-----ChHhHHHHhhcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeecc
Q 013839 173 YDPDSKS----L-----DFAALMDDIKNAPD-------SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 173 ~~~~~~~----~-----d~e~l~~~i~~~~~-------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Dea 236 (435)
. .++++ + |+++|++++++.+. +++++++++| ||||.+.+ +++|+++|++|++++++|++
T Consensus 275 ~-~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA 349 (755)
T 2vyc_A 275 S-RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_dssp C-BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECT
T ss_pred C-CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECc
Confidence 3 23333 4 99999999975321 2247888888 79998865 66999999999999999999
Q ss_pred CCCc-cCCCCcccHHHHHHh--hh-cCCeEEEEecccccccccCCcccEEE
Q 013839 237 YQGF-ASGDLDKDAQAIRIF--LE-DEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 237 y~~~-~~~~~~~~~~~~~~~--~~-~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
|... .+++...+..++ .. .+ ...+++++.|+||++ +|.+.|.++
T Consensus 350 ~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i 397 (755)
T 2vyc_A 350 WYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYI 397 (755)
T ss_dssp TCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEE
T ss_pred CchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeee
Confidence 8643 222100000111 11 12 245778999999985 567655444
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-17 Score=164.72 Aligned_cols=299 Identities=11% Similarity=0.073 Sum_probs=179.4
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCe
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
..|..-+.++++.+|+++ +.+ +.+. +++|+++|+..+ +.++++|||+|+++.++|..+...+...|+++
T Consensus 191 ~~~~g~i~eaE~~lA~~f-Ga~------~a~~--v~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~p 259 (715)
T 3n75_A 191 LDHSGPHKEAEQYIARVF-NAD------RSYM--VTNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTP 259 (715)
T ss_dssp TTTBTHHHHHHHHHHHHH-TCS------EEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred CCCcHHHHHHHHHHHHHh-CCC------CceE--ECcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEE
Confidence 344444578888888887 442 1233 566667888777 78889999999999999999999999999999
Q ss_pred eeeeecCCCCCCc---------ChHhHHHHhhcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeecc
Q 013839 168 RTYHYYDPDSKSL---------DFAALMDDIKNAPD--SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 168 ~~v~~~~~~~~~~---------d~e~l~~~i~~~~~--~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Dea 236 (435)
+.++.. .+++++ |++.|++++.+.+. .++++++++| ||+|.+.+.+ +|.++|++++ +++||+
T Consensus 260 v~v~~~-~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~---~I~ela~~~~--livDEA 332 (715)
T 3n75_A 260 IYFRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTD---FIKKTLDVKS--IHFDSA 332 (715)
T ss_dssp EEECCC-BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHH---HHHHHCCCSE--EEEECT
T ss_pred EEEecc-ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHH---HHHHHhCcCc--EEEccc
Confidence 998763 334554 89999999986431 1237888888 9999998655 7777777663 799999
Q ss_pred CCCcc-CCCCcccHHHHHHhhh--cCCe-EEEEecccccccccCCc-ccEEEEEecChhHHHHHHHHHHHHhhcc-ccCC
Q 013839 237 YQGFA-SGDLDKDAQAIRIFLE--DEHL-IGCAQSYAKSMGLYGHR-VGCLSILCVDSKQAAAIRSQIQQIARAM-YGSP 310 (435)
Q Consensus 237 y~~~~-~~~~~~~~~~~~~~~~--~~~~-~i~~~s~SK~~g~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 310 (435)
|.... +++. .+....... ..+. ++++.|++|+++ |+. .|++.+ . +.- ....+++..... +.++
T Consensus 333 H~~~~~f~~~---~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v-~-~~i----~~~~~~~~~~~~~STSp 401 (715)
T 3n75_A 333 WVPYTNFSPI---YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHV-K-GDV----NEETFNEAYMMHTTTSP 401 (715)
T ss_dssp TCTTGGGSGG---GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEE-E-SCC----CHHHHHHHHHHTSCSSC
T ss_pred cccccccCCc---cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEe-C-chh----hHHHHHHHHHhhcCCCc
Confidence 86543 3321 000111111 1233 367999999975 442 467653 2 332 122233322222 2345
Q ss_pred ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC--ccccccC-------------------
Q 013839 311 PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS-LN--WEHITNQ------------------- 368 (435)
Q Consensus 311 ~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~--~~~~~~~------------------- 368 (435)
+.+...++..++..-. ...-++.++++.++.+.+++.|++++.. .+ +.+..++
T Consensus 402 sy~~~AsldaA~~~~~-----~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf 476 (715)
T 3n75_A 402 HYGIVASTETAAAMMK-----GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGF 476 (715)
T ss_dssp CHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCC
T ss_pred hHHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccc
Confidence 5444444433332100 0122345566667777777777655310 00 0010000
Q ss_pred ----cceeE---------e-----------cCCCHHHHHHHhhhccEEEeCCC------cEEeccCCCCcHHHHHHHHHH
Q 013839 369 ----LGMFC---------F-----------SGLTPYQVDRLAKEFHIYMTQDG------RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 369 ----~g~~~---------~-----------~~~~~~~~~~ll~~~gI~i~pgg------Ris~~~~~~e~i~~~~~~l~~ 418 (435)
.+.+. . .|++...+.+.|+++||.+.-.+ -++++. +.++++.++++|.+
T Consensus 477 ~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~-~~~~~~~L~~aL~~ 555 (715)
T 3n75_A 477 KNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGI-DKTKALSLLRALTD 555 (715)
T ss_dssp TTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTC-CHHHHHHHHHHHHH
T ss_pred cccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCC-CHHHHHHHHHHHHH
Confidence 00000 0 13455677777788899997654 334444 67788889888887
Q ss_pred HHH
Q 013839 419 VTR 421 (435)
Q Consensus 419 ~l~ 421 (435)
+-+
T Consensus 556 ~~~ 558 (715)
T 3n75_A 556 FKR 558 (715)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=149.73 Aligned_cols=274 Identities=14% Similarity=0.099 Sum_probs=175.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCCCCEEE-EcCCCChh-hHHHHhhCCCCeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHPESHIY-FPDPTWSN-HHNIWRDAQIPERTY 170 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vl-v~~p~y~~-~~~~~~~~g~~~~~v 170 (435)
+.+.|+.+++++.... +++|+ + |.|||++++++ +..++ +||++. +....|.. +...++..|+++..+
T Consensus 52 ~~~~r~~la~ll~~~~-----~~~v~--f~t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~ 121 (361)
T 3m5u_A 52 HFGAQEKAKKLYELND-----DYEVL--FLQGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTV 121 (361)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CceEE--EEcCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEE
Confidence 4677888888884322 23566 6 99999999998 67777 888763 23223321 233456779999999
Q ss_pred eecCCCC-CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 171 HYYDPDS-KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 171 ~~~~~~~-~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
+. +..+ +..+++. + +. ++++++.+++.+|.||+..+. +++ +|+++++|.+ +.+...+.+
T Consensus 122 ~~-~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~-q~~g~~~id--- 181 (361)
T 3m5u_A 122 AS-SEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDAS-SDFFSRKVD--- 181 (361)
T ss_dssp EE-CTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECG-GGTTSSCCC---
T ss_pred ec-ccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcc-cccCCCCCC---
Confidence 87 2332 1146666 3 65 678888888888888998662 233 4999999998 444433222
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH-----------H--hhccccCCChhHHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ-----------I--ARAMYGSPPVHGIL 316 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~-----------~--~~~~~~~~~~~~q~ 316 (435)
..+..+++.|..|.+|.+| +|++++ +++ +.+.+.. . ....+.+++.....
T Consensus 182 --------~~~~d~~~~s~~K~~gp~G--~g~l~~---~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~ 244 (361)
T 3m5u_A 182 --------FSNIALFYGGVQKNAGISG--LSCIFI---RKD----MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIY 244 (361)
T ss_dssp --------CTTEEEEEEETTTTSSCTT--CEEEEE---EHH----HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred --------cccCCEEEEechhccCCCc--cEEEEE---cHH----HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHH
Confidence 1123578889999999777 577764 666 3333321 1 11233456666666
Q ss_pred HHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cc--C-cceeE--ecC---CCHHHHHHHh
Q 013839 317 LVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TN--Q-LGMFC--FSG---LTPYQVDRLA 386 (435)
Q Consensus 317 ~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~-~g~~~--~~~---~~~~~~~~ll 386 (435)
++..+++--. +. .++...++.+++++++++.|++++.- .... .+ . .+... ..+ ++.+ +...|
T Consensus 245 ~l~~al~~l~-----~~gG~~~i~~~~~~l~~~l~~~L~~~~g~--~~~~~~~~~rs~~ivsf~~~~~~~~~~~-~~~~L 316 (361)
T 3m5u_A 245 MFNLEMDWLL-----NQGGLDKVHEKNSQKATMLYECIDLSNGF--YKGHADKKDRSLMNVSFNIAKNKDLEPL-FVKEA 316 (361)
T ss_dssp HHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHHHTSTTS--EEESSCGGGBCSSEEEEEESSCTTHHHH-HHHHH
T ss_pred HHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHHCCCe--eeccCCHHHcCCeEEEEECCCchhhhHH-HHHHH
Confidence 6666654211 12 36778888999999999999988620 1111 11 1 12222 223 2333 43455
Q ss_pred hhccEEEeCC----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 387 KEFHIYMTQD----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 387 ~~~gI~i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
+++||.+.+| | |+|+... +.++++++++.|+++.++
T Consensus 317 ~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 317 EEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 7789999887 3 9998654 789999999999998764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=147.21 Aligned_cols=333 Identities=11% Similarity=0.028 Sum_probs=198.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-|. ..+++++++.+++..+... ..+..-..++.+.+++.+.+ .+.+. ++++|
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~~~~~~-~~~~~~~~~lae~l~~~~p~-------~~~v~--f~~SG 152 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQGGINL-TGHNLLEGRLARLICERFPQ-------IEQLR--FTNSG 152 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHHTCSCC-CSEESSHHHHHHHHHHHSTT-------CSEEE--EESSH
T ss_pred CCCCEEEEccccHHhhcccC-CCHHHHHHHHHHHhcCCCc-cCCcHHHHHHHHHHHHhCCC-------CCEEE--EeCch
Confidence 46788999988753122222 2334555555566543222 22233345777888877633 24677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-CCCee---eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-QIPER---TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~---~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
++|+..+..+.......++|+....+|.+....+... +...+ .... +. -|++.+++.+++..++..+|++.
T Consensus 153 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~-p~----nd~~~l~~~l~~~~~~iAavIvE 227 (454)
T 4ao9_A 153 TEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL-PY----NDAQTARAQIERHGPEIAVVLVE 227 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE-CT----TCHHHHHHHHHHTGGGEEEEEEC
T ss_pred HHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC-CC----chHHHHHHHHhhcCCceEEEEec
Confidence 9999998755544444588999998887653221111 11111 1111 11 37889999998776678888887
Q ss_pred CCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 203 SAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 203 ~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
......|.+. +++.+++|.++|++||+++|.||+..+ ..+. ......+ +....+ -+++|.+| .|+.+|.
T Consensus 228 Pv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~----~~a~e~~-gv~PDi---~t~gK~lg-gG~Piga 297 (454)
T 4ao9_A 228 PMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAP----HGLANKL-GIRSDL---TTLGKYIG-GGMSFGA 297 (454)
T ss_dssp SEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGST----TCHHHHH-TCCCSE---EEEEGGGG-TTSSCEE
T ss_pred cccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCcc----ccchhcc-CCCCcE---EEeccccC-CCCccee
Confidence 7777778765 677899999999999999999999753 2221 1122222 222222 35899998 7899998
Q ss_pred EEEEecChhHHHHHHHHHHHHh----hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 013839 282 LSILCVDSKQAAAIRSQIQQIA----RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL---- 353 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l---- 353 (435)
+.+ .++ +++.+.... ...+++.++++..++.+.|+.-. + +...+++.++.++|.+.|
T Consensus 298 ~~~---~~e----i~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~------~--~~~~~~~~~~g~~l~~~L~~l~ 362 (454)
T 4ao9_A 298 FGG---RAD----VMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF------T--PEAAGALAERGEALRARLNALC 362 (454)
T ss_dssp EEE---CHH----HHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS------C--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eee---HHH----HHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh------c--cChhHHHHHHHHHHHHHHHHHH
Confidence 864 788 776654321 12345566776666666553211 0 122233333444444444
Q ss_pred HhhCCCCCccccccCcceeEec-------------CCCHH----HHHHHhhhccEEEeCCCcEEec-cCCCCcHHHHHHH
Q 013839 354 EKLGSSLNWEHITNQLGMFCFS-------------GLTPY----QVDRLAKEFHIYMTQDGRISMA-GVTTGNVNYLANA 415 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~----~~~~ll~~~gI~i~pggRis~~-~~~~e~i~~~~~~ 415 (435)
++.+.+. .....|.++... ..+.+ +...++ ++||++.|.|++.++ ..|+++|++++++
T Consensus 363 ~~~~~~~---~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~~~~~~s~~~T~~dId~~l~a 438 (454)
T 4ao9_A 363 ANEGVAM---QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPRGFVVLSLPLTDADIDRYVAA 438 (454)
T ss_dssp HHHTBSC---EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTTCEEECCTTCCHHHHHHHHHH
T ss_pred hhCCCCE---EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCCCCEEEeCCCCHHHHHHHHHH
Confidence 4444321 222334333321 11222 234454 589999999966543 2489999999999
Q ss_pred HHHHHHhhh
Q 013839 416 IHEVTRSEQ 424 (435)
Q Consensus 416 l~~~l~~~~ 424 (435)
|++++.+..
T Consensus 439 l~~~l~~~~ 447 (454)
T 4ao9_A 439 IGSFIGGHG 447 (454)
T ss_dssp HHHHHHHSG
T ss_pred HHHHHHhcc
Confidence 999998754
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=151.76 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=177.9
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
.-+.+.|+.+++++...+ +++|+ + |.|||++++++ +..++.+||+|++..-+..+. ...++..| ++.
T Consensus 72 ~~~~~ar~~la~ll~~~~-----~~evi--f~t~~~T~a~n~a--i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~ 141 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLNIPS-----NYKVL--FCHGGGRGQFAGV--PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQ 141 (386)
T ss_dssp -CCHHHHHHHHHHHTCCT-----TEEEE--EEESCTTHHHHHH--HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEE
T ss_pred HHHHHHHHHHHHHhCCCC-----CceEE--EEcCCchHHHHHH--HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeE
Confidence 456789999999984422 23566 6 68999999998 777788999987554443333 23345677 777
Q ss_pred eeeec-CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 169 TYHYY-DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 169 ~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
.++.. .+++..+++++++.++. +++++|.+++.+|.||+. .+.+ +|. +|+++++|.+ +.+...+.+
T Consensus 142 ~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~pi~---~i~-----~g~~~~vDa~-qs~g~~pid 209 (386)
T 3qm2_A 142 IIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGIAIDETP---DFG-----PEVVVTADFS-STILSAPLD 209 (386)
T ss_dssp EEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTEECCCCC---CCC-----TTCCEEEECT-TTTTSSCCC
T ss_pred EEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCEecCchh---hhc-----CCCEEEEEcc-cccCCCCCC
Confidence 77762 02322378888877776 678888888888899996 5554 332 7999999999 444433222
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHH-------HHHHHHHHh--hccccCCChhHHHH
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAA-------IRSQIQQIA--RAMYGSPPVHGILL 317 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~-------~~~~l~~~~--~~~~~~~~~~~q~~ 317 (435)
+. + .+ +.+.|..|.+|.+| +|++.+ +++..+. +.+ +...+ .....+++.....+
T Consensus 210 -----v~---~-~~--~~~~s~hK~lGP~G--~g~l~v---~~~~~~~~~~~~p~~~~-~~~~~~~~~~~gTp~v~~i~~ 272 (386)
T 3qm2_A 210 -----VS---R-YG--VIYAGAQKNIGPAG--LTLVIV---REDLLGKAHESCPSILD-YTVLNDNDSMFNTPPTFAWYL 272 (386)
T ss_dssp -----GG---G-CS--EEEEETTTTTCCTT--EEEEEE---EGGGCSCCCTTSCGGGC-HHHHHHC-------CCSHHHH
T ss_pred -----cc---c-cC--EEEEecccccCCCc--cEEEEE---CHHHHhhhcccCCcHHH-HHHHhhcCCCCCCCcHHHHHH
Confidence 11 1 12 45688999999777 577764 4442110 000 01111 11223555566666
Q ss_pred HHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc-ce--eEecC--CCHHHHHHHhhhccE
Q 013839 318 VATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL-GM--FCFSG--LTPYQVDRLAKEFHI 391 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~--~~~~~--~~~~~~~~ll~~~gI 391 (435)
+..+++.-. +. .++...++.+++++++++.|++++............ +. |.+.+ ++.+++.. |+++||
T Consensus 273 l~~Al~~~~-----~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI 346 (386)
T 3qm2_A 273 SGLVFKWLK-----AQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGL 346 (386)
T ss_dssp HHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTE
T ss_pred HHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCC
Confidence 666664221 13 478888899999999999999876310000001111 22 22222 34444455 577899
Q ss_pred EEeCC----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 392 YMTQD----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 392 ~i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+| | |+|+... +.++++++++.|+++.++
T Consensus 347 ~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 347 HALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99887 3 9998654 789999999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=152.91 Aligned_cols=280 Identities=14% Similarity=0.083 Sum_probs=180.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCC--CCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHP--ESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~--gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
+.+.|+.+++++.... +++|+ + +.|||++++++ +..++.+ ||+|++..-++... ...++..|..++
T Consensus 60 ~~~ar~~la~ll~~~~-----~~evi--f~t~~~T~a~n~a--~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLAVPD-----NYKVI--FLQGGGCGQFSAV--PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINI 130 (377)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHHH--HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CCeEE--EEcCchHHHHHHH--HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceE
Confidence 4677888888884322 23566 6 58999999998 6666654 99998776554433 234556777766
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. +++++.++++++..+. +++++|.+++..|.||+..+. +|+++|+++++|.+ +.+...+.+
T Consensus 131 ~~~~--~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~-q~~g~~~id-- 194 (377)
T 3e77_A 131 VHPK--LGSYTKIPDPSTWNLN---PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMS-SNFLSKPVD-- 194 (377)
T ss_dssp CSCC--CSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECT-TTTTSSCCC--
T ss_pred Eecc--CCCcCCCCChHHhccC---CCccEEEEeCccCchheEchh--------hhccCCCEEEEEcc-cccCCCCCc--
Confidence 6665 3345677777766555 678888888888899999885 37789999999999 444433222
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHH-------HHHHHHHH--hhccccCCChhHHHHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAA-------IRSQIQQI--ARAMYGSPPVHGILLVA 319 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~-------~~~~l~~~--~~~~~~~~~~~~q~~~~ 319 (435)
+ +..+ +++.|..|.+|.+| +|++++ .++.++. +.+ +... ......+++....+++.
T Consensus 195 ---~----~~~~--~~~~s~~K~~gp~G--~g~l~~---~~~~l~~~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~ 259 (377)
T 3e77_A 195 ---V----SKFG--VIFAGAQKNVGSAG--VTVVIV---RDDLLGFALRECPSVLE-YKVQAGNSSLYNTPPCFSIYVMG 259 (377)
T ss_dssp ---G----GGCS--EEEEEGGGTTSCTT--CEEEEE---ETTSCSCCCTTSCGGGC-HHHHHTTTTCSSCCCHHHHHHHH
T ss_pred ---h----hhcC--EEEEecccccCCCc--cEEEEE---cHHHHhhccCCCCchhh-HHHHhhcCCCCCCchHHHHHHHH
Confidence 1 1112 46788999999888 577653 4442110 110 0111 11224456666666666
Q ss_pred HHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----cCcce---eEecCCC--H----HHHHHH
Q 013839 320 TILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT----NQLGM---FCFSGLT--P----YQVDRL 385 (435)
Q Consensus 320 ~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~g~---~~~~~~~--~----~~~~~l 385 (435)
.+|+--. +. .++.+.++.+++.+++++.|++++. +.... ...+. |...+++ . .++..+
T Consensus 260 ~al~~l~-----~~GG~~~i~~~~~~l~~~l~~~L~~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l 331 (377)
T 3e77_A 260 LVLEWIK-----NNGGAAAMEKLSSIKSQTIYEIIDNSQG---FYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKA 331 (377)
T ss_dssp HHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTSTT---SEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHH
Confidence 6664211 13 4788889999999999999998731 22111 12222 3334542 2 233444
Q ss_pred hhhccEEEeCC----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 386 AKEFHIYMTQD----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 386 l~~~gI~i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
+++||.+.+| | |+|+... +.++++++++.|++++++
T Consensus 332 -~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 332 -LELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp -HHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -HHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999887 3 9998654 789999999999998765
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=130.65 Aligned_cols=326 Identities=13% Similarity=0.118 Sum_probs=197.7
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCC------Cc---ccHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESIS------AS---VSTKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~------~~---g~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|=..+ -..++.+.++......+ ...+||. .. -...|....++.+++.+.. +.-+
T Consensus 54 ~~~ieLIASE-------N~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~V 122 (490)
T 3ou5_A 54 CRGLELIASE-------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGV 122 (490)
T ss_dssp HHSEECCTTC-------CCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEE
T ss_pred HcCceEecCC-------CcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCC
Confidence 4566776666 24566667666666522 2223332 22 1234444455666776532 1101
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH--------hhCC--CCeeeeeecCCCCCCcChHhHHHHh
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW--------RDAQ--IPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~--------~~~g--~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
-+...+|+.|+..+ ++++++|||+|+..+....+|..-- ...| .+.++|++ +++++.+|.|++++..
T Consensus 123 NVQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~v-d~~t~~IDyd~~~~~A 199 (490)
T 3ou5_A 123 NVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTA 199 (490)
T ss_dssp ECCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCE-ETTTTEECHHHHHHHH
T ss_pred CCCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCccccccccccccccccc-CCCCCcccHHHHHHHH
Confidence 22578999998888 9999999999999998777664321 1122 25666777 4667889999999988
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
.+ .++++|+.....+|--. +++++.++|++.|+++++|.++ .++.-++..++ ++ + .-.++.+|.
T Consensus 200 ~~--~kPklIi~G~SaY~r~i-----d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ps--P~----~--~ADvVTtTT 264 (490)
T 3ou5_A 200 RL--FRPRLIIAGTSAYARLI-----DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----K--HADIVTTTT 264 (490)
T ss_dssp HH--HCCSEEEECCSSCCSCC-----CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--GG----G--TCSEEEEES
T ss_pred hh--cCCCeEEECCccCcccc-----CHHHHHHHHhhcccEEEechhhhhhhhcccccCC--cc----c--cceEEeccc
Confidence 75 45788988766666532 4678899999999999999995 34444432211 22 1 236788999
Q ss_pred cccccccCCcccEEEEEecCh--------------hHHHHHHHHHHHHhhccccCCChhHH-HHHHHHhCChhhHHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDS--------------KQAAAIRSQIQQIARAMYGSPPVHGI-LLVATILSDPNLKSLWID 333 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~q-~~~~~~l~~~~l~~~~~~ 333 (435)
.|++ +|-|-|.+. ++.. + +.+++.+...+...+.|.... .+.+.++.+. ...
T Consensus 265 HKTL--rGPrGG~Il--~~~~~~~~~~k~~~~~~~~----~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea-----~~p 331 (490)
T 3ou5_A 265 HKTL--RGARSGLIF--YRKGVKAVDPKTGREIPYT----FEDRINFAVFPSLQGGPHNHAIAAVAVALKQA-----CTP 331 (490)
T ss_dssp SSTT--CSCSCEEEE--EECSEEEECC--CCEEECC----CHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH-----HSH
T ss_pred cccc--cCCCceEEE--eccccccccccccchhHHH----HHHHHHhhcCccccccchHHHHHHHHHHHHHH-----HhH
Confidence 9997 788988774 5332 4 666777766544444333333 3333334321 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeE-ec-----CCCHHHHHHHhhhccEEEe----CC-------
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC-FS-----GLTPYQVDRLAKEFHIYMT----QD------- 396 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~ll~~~gI~i~----pg------- 396 (435)
..+.+.++..++.+.|.+.|.+.|+ ++.....-.++ ++ +++...++++|++.||.+- |+
T Consensus 332 ~fk~Ya~qVv~NAkaLA~~L~~~G~----~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~ 407 (490)
T 3ou5_A 332 MFREYSLQVLKNARAMADALLERGY----SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITP 407 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC----eeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCC
Confidence 4567778888889999999999885 34432222233 22 5577889889999999885 32
Q ss_pred -C-cEEec-----cCCCCcHHHHHHHHHHHHH
Q 013839 397 -G-RISMA-----GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 397 -g-Ris~~-----~~~~e~i~~~~~~l~~~l~ 421 (435)
| ||+.. ++.+++++++.+-|.+++.
T Consensus 408 SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3 88742 3577888888888887764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=134.75 Aligned_cols=343 Identities=12% Similarity=-0.005 Sum_probs=191.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..||+..|.-...-|. ..+++++++.+++.. .....+.+.....+|.+.+++..-+.. .+.+. +++
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~--f~~ 132 (456)
T 4atq_A 61 VDGNSFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH-----AKRTV--LFN 132 (456)
T ss_dssp TTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-----CEEEE--EES
T ss_pred CCCCEEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCC-----CcEEE--EeC
Confidence 46678888877742111121 122333333333331 112223333444566666766653222 23566 789
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCC-------------CeeeeeecC----CCCCCcChHhHH
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQI-------------PERTYHYYD----PDSKSLDFAALM 186 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~----~~~~~~d~e~l~ 186 (435)
+|++|++.+..+........+|+....+|.+...... ..+- .+..+|... .....-+.+.++
T Consensus 133 sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 212 (456)
T 4atq_A 133 SGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAK 212 (456)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHH
T ss_pred ChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHH
Confidence 9999999998766655556889999999977643222 1111 122233210 011111223333
Q ss_pred HHhh---c--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 187 DDIK---N--APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 187 ~~i~---~--~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+. + .+++..++++...+.-.|.+. +++.+++|.++|++||+++|.||+..+|.-.+. .+....+ +...
T Consensus 213 ~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~---~~a~e~~-gv~P 288 (456)
T 4atq_A 213 RAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE---WFAVDHE-GVVP 288 (456)
T ss_dssp HHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-TCCC
T ss_pred HHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc---ccccccc-CCCC
Confidence 2222 1 134678888877677777764 677899999999999999999999888765431 1222222 2222
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
. | -+++|.+| .|..+|.+++ .++ +.+.+.......+++.++++..++.+.|+.-. + +...+
T Consensus 289 D-i--vt~gK~lg-gg~P~~av~~---~~~----i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~------~--~~l~~ 349 (456)
T 4atq_A 289 D-I--ITMAKGIA-GGLPLSAITG---RAD----LLDAVHPGGLGGTYGGNPVACAAALAAIDTME------Q--HDLNG 349 (456)
T ss_dssp S-E--EEECGGGG-TTSSCEEEEE---EHH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH------H--TTHHH
T ss_pred c-h--hhhhhccc-CcCCceeeEe---cHH----HHhcccccCCCCCCCCChHHHHhhHHHHHHHh------h--ccHHH
Confidence 2 2 34789988 8899998864 677 66666544445567777787777777664211 1 12333
Q ss_pred HHHHHHHHHHHHHHhh----CCC--CCccccccCcceeEecCC--------CH----HHHHHHhhhccEEEeCCC-----
Q 013839 341 RIQRKRTTLRQNLEKL----GSS--LNWEHITNQLGMFCFSGL--------TP----YQVDRLAKEFHIYMTQDG----- 397 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~----~~~--~~~~~~~~~~g~~~~~~~--------~~----~~~~~ll~~~gI~i~pgg----- 397 (435)
+.++.-+++.+.|+++ +.. ..+..+...| ++.-+.+ +. .....+ .++|+.+.+.|
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~G-l~~giel~~~~~~~~~~~~~~~v~~~~-~~~Gvl~~~~g~~~~~ 427 (456)
T 4atq_A 350 RARHIEELALGKLRELAAELSAGGGSVVGDIRGRG-AMLAIELVQPGSKEPNAELTKAVAAAC-LKEGVIILTCGTYGNV 427 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEET-TEEEEEEBCTTSCCBCHHHHHHHHHHH-HHTTEECEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCceEEeeecc-eEEEEEEecCCCCCcCHHHHHHHHHHH-HHCCCEEEecCCCCCE
Confidence 4444444455444433 110 0011122233 3332221 12 233444 46899998654
Q ss_pred -cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 398 -RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 -Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
||... ..+++++++++++|.++++.
T Consensus 428 irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 428 IRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 66542 34889999999999998864
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=128.14 Aligned_cols=280 Identities=13% Similarity=0.112 Sum_probs=165.5
Q ss_pred ecCCchhHHHHHHHHHHHhCC---C-CEEEEcCCCChhhHHHHhhCCCCeeeeee-cCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFHP---E-SHIYFPDPTWSNHHNIWRDAQIPERTYHY-YDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~---g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+++|+|++...+ +++.+.+ | |.|+++..++......+...|+++++++. .+++..++|++.+++++++.+...
T Consensus 139 lVnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~ 216 (501)
T 3hl2_A 139 VVPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDC 216 (501)
T ss_dssp EESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGG
T ss_pred EECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCc
Confidence 688999776666 5556653 4 99999999999999999999999999854 233457899999999998764344
Q ss_pred EEEEeC-CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 197 FFLLHP-SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~-~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
.++++. .++|-.+. .+++++|+++|++||+++++|+||...... ... -.......+.-++++.|..|.+-.+
T Consensus 217 i~~V~~Ttt~y~p~~---~ddI~eIaeIch~~gIpllVDeAhGah~~~---~~~-lp~sA~~~GrAD~vVqS~HK~llvp 289 (501)
T 3hl2_A 217 ILCIHSTTSCFAPRV---PDRLEELAVICANYDIPHIVNNAYGVQSSK---CMH-LIQQGARVGRIDAFVQSLDKNFMVP 289 (501)
T ss_dssp EEEEEEECSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTCTTCHH---HHH-HHHHHHHHSCCCEEEEEHHHHHCCC
T ss_pred EEEEEecCCCCCCcc---cccHHHHHHHHHHcCCeEEEeCcchhhhhh---hhh-hHHHHHhcCCCcEEEecccccceee
Confidence 444443 33442222 357889999999999999999998554311 001 1111222233567899999997544
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+. |.++ ...+++ +++++.........+.+.+...++ .+.-+. +..++..++..++.++|.+.|++
T Consensus 290 -IG-G~ii-~~~d~e----~l~~~~~~yPGr~S~Spsldl~~t--LL~lGr------~Gy~~ll~e~~ela~~L~~~L~~ 354 (501)
T 3hl2_A 290 -VG-GAII-AGFNDS----FIQEISKMYPGRASASPSLDVLIT--LLSLGS------NGYKKLLKERKEMFSYLSNQIKK 354 (501)
T ss_dssp -SS-CEEE-EESCHH----HHHHHHHTSCSCBCSHHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cC-ceEE-EeCCHH----HHHHHHHhCCCCCCCcHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4454 255666 555553321111122222322333 332221 44566666677777777777766
Q ss_pred hCCCCCccccc---cCcceeEecC-C------CHHHHHHHhhhcc---EEEeCCC-----------------------cE
Q 013839 356 LGSSLNWEHIT---NQLGMFCFSG-L------TPYQVDRLAKEFH---IYMTQDG-----------------------RI 399 (435)
Q Consensus 356 ~~~~~~~~~~~---~~~g~~~~~~-~------~~~~~~~ll~~~g---I~i~pgg-----------------------Ri 399 (435)
+....+-+.+. ...++-+.+. + +..++-.+|-..+ --+.+.| -+
T Consensus 355 la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl 434 (501)
T 3hl2_A 355 LSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYL 434 (501)
T ss_dssp HHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEE
T ss_pred HHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHH
Confidence 42110112222 2222222222 2 1234544444343 3343321 23
Q ss_pred Eec---cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 400 SMA---GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 400 s~~---~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.+ +++.+|++.++++|.+++.+.+.
T Consensus 435 ~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 435 NAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221 35889999999999999977653
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-12 Score=125.17 Aligned_cols=346 Identities=10% Similarity=0.066 Sum_probs=192.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CC-CCCCC-CcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EF-LESIS-ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.+++..||+..|.....-|.. .+++++++.+++... .. ..+.. ..-.-+|-+.|++... .+ -+++. ++
T Consensus 64 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p-~~-----~~~v~--f~ 134 (473)
T 4e3q_A 64 VNGRRYLDANSGLWNMVAGFD-HKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSP-FD-----SGRVF--YT 134 (473)
T ss_dssp TTCCEEEETTTTTTTCTTCSC-CHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSS-CS-----SCEEE--EE
T ss_pred CCCCEEEEcccCHHHhhccCC-CHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCC-CC-----ccEEE--Ee
Confidence 356778888777531212221 233444444444321 01 11111 1112234445544431 11 24677 89
Q ss_pred CCchhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHH-hhCCC-----------CeeeeeecC----CCCCC--
Q 013839 124 LSGTGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIW-RDAQI-----------PERTYHYYD----PDSKS-- 179 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~-~~~g~-----------~~~~v~~~~----~~~~~-- 179 (435)
++|++|++.+.++.... .++ .+|+...-+|.+..... ...|- ....++..+ .....
T Consensus 135 ~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 214 (473)
T 4e3q_A 135 NSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE 214 (473)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh
Confidence 99999999997554332 233 57888888887653322 21111 111121100 00000
Q ss_pred -----cChHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 180 -----LDFAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 180 -----~d~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
...+++++.+.+. ++...+|++...+.-.|++. +++.+++|.++|++||+++|.||+..+|+-.+. .+..
T Consensus 215 ~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~---~fa~ 291 (473)
T 4e3q_A 215 EQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN---TWGC 291 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS---SCHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc---hhHH
Confidence 0123455555432 34567888877777778765 567899999999999999999999988865431 2233
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHHHhCC
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~~l~~ 324 (435)
..+ +....++ +++|.++ .| +.+|.+++ .++ +.+.+.... ...+++.++++..++.+.|+.
T Consensus 292 e~~-gv~PDi~---t~~K~l~-gG~~Pl~av~~---~~~----i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~ 359 (473)
T 4e3q_A 292 VTY-DFTPDAI---ISSKNLT-AGFFPMGAVIL---GPE----LSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDV 359 (473)
T ss_dssp HHT-TCCCSEE---EECGGGG-TTSSCCEEEEE---CHH----HHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred Hhc-CCCCChH---Hhccccc-CCCCCcccccc---cHH----HHHHhccccccccccccCCCCCCCcchhhhhhhhhhh
Confidence 333 2222233 4799998 55 89998864 888 666554321 133556667766666666642
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec---C------CC-----HHHHHHHhhhcc
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS---G------LT-----PYQVDRLAKEFH 390 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~---~------~~-----~~~~~~ll~~~g 390 (435)
-. -+...++.++..++|.+.|+++.-...+......|-++.+- + .+ .+.+...+.++|
T Consensus 360 i~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~G 431 (473)
T 4e3q_A 360 VM--------NEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLG 431 (473)
T ss_dssp HH--------HSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTT
T ss_pred hc--------cccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCC
Confidence 11 12344556666677777777663211122223333322221 0 11 233434445689
Q ss_pred EEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 391 IYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 391 I~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+.|.| ||+.. ..+++++++++++|.+++++..
T Consensus 432 ll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 432 LICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999988 66532 3488999999999999998754
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-11 Score=115.28 Aligned_cols=211 Identities=13% Similarity=0.040 Sum_probs=124.8
Q ss_pred EecCCchhHHHHHHHHHHHhC----CCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCC-C
Q 013839 121 VQALSGTGACRLFAEFQRRFH----PESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAP-D 194 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~~~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~-~ 194 (435)
.+++|+|++..++ .++.++ +|+.|+++.-++......+...|+.++.++.. +++.+.+|++.+++++++.+ +
T Consensus 120 ~lV~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~ 197 (450)
T 3bc8_A 120 FVVPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE 197 (450)
T ss_dssp EEESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG
T ss_pred EEECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC
Confidence 4788988554444 333333 38999999999999999999999998887442 23457899999999998654 2
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH-HhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR-IFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~SK~~g 273 (435)
.+.+|+.+..+|.+|. .+++++|+++|++||+++++|+||...... ...+. .......-+.++.|..|.+.
T Consensus 198 ~~~~Vv~t~t~~g~g~---~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~-----~~~l~~~a~~~~~AD~~v~S~HK~l~ 269 (450)
T 3bc8_A 198 HILCLHSTTACFAPRV---PDRLEELAVICANYDIPHVVNNAYGLQSSK-----CMHLIQQGARVGRIDAFVQSLDKNFM 269 (450)
T ss_dssp GEEEEEEESSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHHHSCCCEEEEEHHHHHS
T ss_pred CEEEEEEECCcCCCce---ecCHHHHHHHHHHCCCeEEEECCCchhhhh-----hHhHHHHHhcccCCCEEEECCccCCC
Confidence 3344444333333443 356889999999999999999998653311 11111 11111234567889999976
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
.+ ...+++. ..+++ ..+++... +.......++.......+..+. +...+..++..+..+++.+.+
T Consensus 270 a~-~~~~~l~--~rd~~----~~~~~~~~--~~g~~s~SpsL~l~~~l~~~G~------~g~~~~i~~~~~~a~~l~~~l 334 (450)
T 3bc8_A 270 VP-VGGAIIA--GFNEP----FIQDISKM--YPGRASASPSLDVLITLLSLGC------SGYRKLLKERKEMFVYLSTQL 334 (450)
T ss_dssp CC-SSCEEEE--ESCHH----HHHHHHHH--SCSCBCSHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hccEEEE--ecCHH----HHHHHHHH--hhcCCcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 43 3334443 34666 44444332 1111222333333333332221 333444444555566666666
Q ss_pred Hhh
Q 013839 354 EKL 356 (435)
Q Consensus 354 ~~~ 356 (435)
+++
T Consensus 335 ~~~ 337 (450)
T 3bc8_A 335 KKL 337 (450)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=140.13 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=131.9
Q ss_pred HhHHHHhhc-----CCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 183 AALMDDIKN-----APDSSFFLLHPSA-HNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 183 e~l~~~i~~-----~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+.|++.+++ .+.++.+|++... ++..|... +++.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~e~~ 653 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTTELL 653 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTHHHH
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhhHhc
Confidence 567777652 2356778888764 78888876 788899999999999999999999998876542 1122222
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh------hccccCCChhHHHHHHHHhCC---h
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA------RAMYGSPPVHGILLVATILSD---P 325 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~q~~~~~~l~~---~ 325 (435)
+...++ .++||.++ .| +++|++++ +++ +++.+.... ...+.+.+++++.++.+.|+. .
T Consensus 654 -gv~PDi---itlsK~L~-gG~~Plgav~~---~~~----i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~ 721 (831)
T 4a0g_A 654 -GCKPDI---ACFAKLLT-GGMVPLAVTLA---TDA----VFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDP 721 (831)
T ss_dssp -SSCCSE---EEECGGGG-TTSSCCEEEEE---CHH----HHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCT
T ss_pred -CCCCcE---EEEecccc-cCccCcEEEEE---CHH----HHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhh
Confidence 222233 36999998 57 79999974 888 777665421 223456677777776666531 1
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCccccccCcceeEecCC--C----------HHHHHHHhhhccEE
Q 013839 326 NLKSLWIDEVKIMADRIQR-KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--T----------PYQVDRLAKEFHIY 392 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~----------~~~~~~ll~~~gI~ 392 (435)
++. +.+.+..+++++ ..+.+.+.+++.+. +......| .+..+.+ + ...+...+.++||.
T Consensus 722 ~l~----~~~~~~~~~l~~~l~~~l~~~l~~~~~---v~~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~ 793 (831)
T 4a0g_A 722 ETN----HNITSQGKTLRELWDEELVQQISSHSA---VQRVVVIG-TLFALELKADASNSGYASLYAKSLLIMLREDGIF 793 (831)
T ss_dssp TTC----TTBCTTSSBBCCCSCHHHHHHHHHSTT---EEEEEEET-TEEEEEEC---------CHHHHHHHHHHHHTTEE
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceeEeecc-cEEEEEEecCccccccchHHHHHHHHHHHHCCcE
Confidence 110 111111111111 01234445555542 33333334 3443322 1 12343334568999
Q ss_pred EeCCC---cEEe-ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MTQDG---RISM-AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~pgg---Ris~-~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.|.| ||+. ...++++|++++++|.++++++.
T Consensus 794 v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 794 TRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp CCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred EEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99987 7763 23489999999999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 435 | ||||
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 2e-99 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 6e-96 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-92 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 9e-92 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-91 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-87 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 2e-11 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-09 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 7e-09 |
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 301 bits (771), Expect = 2e-99
Identities = 170/406 (41%), Positives = 240/406 (59%), Gaps = 8/406 (1%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
+ V A + + F DP P K+NLGVGAYR D +P VL VR+ E +IA +
Sbjct: 5 VFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS 64
Query: 85 FLESISASV--STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH- 141
L + + + +L G DS ++E R GVQ+L GTGA R+ AEF R++
Sbjct: 65 SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYN 124
Query: 142 ----PESHIYFPDPTWSNHHNIWRDAQIPERTYH-YYDPDSKSLDFAALMDDIKNAPDSS 196
++ +Y PTW NH+ ++ A + + Y+D + + LD + D++NAP+ S
Sbjct: 125 GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFS 184
Query: 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256
F+LH AHNPTG DPT EQW++I+ K + FPFFD AYQGFASG+L+KDA AIR F+
Sbjct: 185 IFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFV 244
Query: 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGIL 316
+ + CAQS++K+ GLY RVG L+++ + + SQ+Q+I R + +PP G
Sbjct: 245 SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGAR 304
Query: 317 LVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376
+VA LSDP L W VK MADRI R+ LR LE L + W HIT+Q+GMF F+G
Sbjct: 305 IVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTG 364
Query: 377 LTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTRS 422
L P QV+ L + HIY+ GRI+M G+TT N++Y+A +IHE
Sbjct: 365 LNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK 410
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 291 bits (746), Expect = 6e-96
Identities = 200/399 (50%), Positives = 263/399 (65%), Gaps = 2/399 (0%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE 84
WW HV DPI GVTEAF D + K+NLGVGAYRDD G+P VL CVR+AEA IA +
Sbjct: 3 WWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK 62
Query: 85 FLESISASVST-KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG-ACRLFAEFQRRFHP 142
+ S +L G++S+ K GR VQ +SGTG QR F
Sbjct: 63 MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKF 122
Query: 143 ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
+Y P P+W NH I+RDA + + Y YYDP + SLDF M+DI P+ S LLH
Sbjct: 123 SRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA 182
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTGVDP +EQW+E++ K + +FDMAYQGFASGD+++DA A+R F+E +
Sbjct: 183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242
Query: 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATIL 322
+QSYAK+MGLYG R G +++C D+++A + SQ++ + R MY +PP++G + + IL
Sbjct: 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 302
Query: 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQV 382
+ P L+ W+ EVK MADRI RT L NL+K GSS NW+HIT+Q+GMFCF+GL P QV
Sbjct: 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQV 362
Query: 383 DRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
+RL KEF IYMT+DGRIS+AGV + NV YLA+AIH+VT+
Sbjct: 363 ERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 401
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 282 bits (722), Expect = 2e-92
Identities = 147/395 (37%), Positives = 226/395 (57%), Gaps = 2/395 (0%)
Query: 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF 85
++++ A DPI G+ + F AD P KINLG+G Y+D+ G+ VL V++AE + +E
Sbjct: 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 86 LESISASVST-KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
++ + + +L++GK S ++ + R+ Q GTGA R+ A+F +
Sbjct: 62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
++ +P+W NH +++ A + R Y YYD ++ +LDF AL++ + A L H
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTG+DPT EQW+ ++ KG P FD AYQGFA G ++DA+ +R F +
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKELIV 240
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
A SY+K+ GLY RVG +++ DS+ SQ++ RA Y +PP HG +VATILS+
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
L+++W E+ M RIQR R L++ G++ ++ I Q GMF FSGLT QV R
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 360
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
L +EF +Y GR+++AG+T N+ L AI V
Sbjct: 361 LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAV 395
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 281 bits (719), Expect = 9e-92
Identities = 162/406 (39%), Positives = 236/406 (58%), Gaps = 9/406 (2%)
Query: 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--G 82
++++ D + G+ + + D K++LG+GAYRDD G+P VL V+ AE I
Sbjct: 4 LFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS 63
Query: 83 SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP 142
S E + + + + K+++G SD ++E R VQ+LSGTGA + A+F +F P
Sbjct: 64 SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFP 123
Query: 143 ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202
+ +Y PTW+NH I+ + + TY Y+ ++KSLD ++ I+ AP+ S F+LH
Sbjct: 124 DKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHS 183
Query: 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262
AHNPTG+DPT EQW +I K H FD AYQGFA+GDLDKDA A+R+ +E +
Sbjct: 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTV 243
Query: 263 GC---AQSYAKSMGLYGHRVGCL----SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGI 315
QS+AK+ G+YG RVGC + + A+ SQ+ +I R+ +PP +G
Sbjct: 244 SPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGA 303
Query: 316 LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS 375
+VA +L P L W ++ M+ RI + R LR +L KLG+ NW+HI NQ GMF F+
Sbjct: 304 KIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFT 363
Query: 376 GLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421
GLTP V RL + +Y+ GR S+AG+ GNV Y+A AI EV R
Sbjct: 364 GLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVR 409
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 280 bits (717), Expect = 1e-91
Identities = 147/395 (37%), Positives = 213/395 (53%), Gaps = 3/395 (0%)
Query: 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL 86
V A DPI + E F DP K+NL +G Y ++ G LQ V EAEA++
Sbjct: 3 QKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG 62
Query: 87 ESISASV--STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
S+ + L++G D V+K+ R A +Q L G+GA ++ A+F +R+ PES
Sbjct: 63 ASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPES 122
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
++ DPTW NH I+ A TY +YD + + F L+ +K P S LLHP
Sbjct: 123 GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCC 182
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTG D T +QW + K + PF D+AYQGF +G ++DA AIR
Sbjct: 183 HNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLPALV 241
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
+ S++K LYG RVG LS++C D++ A + Q++ R Y SPP G +VA +L+D
Sbjct: 242 SNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLND 301
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
LK+ W+ EV+ M RI R L + L N++++ NQ GMF ++GL+ QVDR
Sbjct: 302 EALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDR 361
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
L +EF +Y+ GR+ +AG+ T NV +A A V
Sbjct: 362 LREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAV 396
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 270 bits (691), Expect = 1e-87
Identities = 130/395 (32%), Positives = 200/395 (50%), Gaps = 5/395 (1%)
Query: 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF 85
++ P A D I + F ADP KI+LGVG Y+D G +++ V AE ++ +E
Sbjct: 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61
Query: 86 LESISASVSTK-MVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES 144
++ + + +L+ G +K +A + + GTGA R E R +P+
Sbjct: 62 TKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDL 118
Query: 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204
++ DPTW NH +I +P +TY Y+D +++ +DF + D+ A LLH
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178
Query: 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264
HNPTG + T +QW EI+ + G P D+AYQGF G ++DA R+ +
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL-EEDAAGTRLIASRIPEVLI 237
Query: 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324
A S +K+ G+Y R GCL LC D+ + + + R Y PP HG +V+T+L+
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297
Query: 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDR 384
P L++ W+ E++ + + R R L L L S + + GMF G TP QV R
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKR 357
Query: 385 LAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419
+ +EF IYM D RI++AG+ + LA AI EV
Sbjct: 358 IKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 62.5 bits (151), Expect = 2e-11
Identities = 37/269 (13%), Positives = 72/269 (26%), Gaps = 26/269 (9%)
Query: 132 LFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN 191
+F P + P P W ++ + + A+ + + I
Sbjct: 103 IFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP 162
Query: 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251
L+ + NPTG+ T ++ R I+ G + D Y+ D +
Sbjct: 163 KTK---LLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIG 219
Query: 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPP 311
E + C +AK+ + G RVG L+ + +I +
Sbjct: 220 AASPEAYERSVVC-SGFAKTYAMTGWRVGFLAG-------PVPLVKAATKIQGHSTSNVC 271
Query: 312 VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGM 371
+ D V+ M +R + L + E
Sbjct: 272 TFAQYGAIAAYENSQ------DCVQEMLAAFAERRRYMLDALNAMP---GLECPKPDGAF 322
Query: 372 FCFSGLTPYQVD------RLAKEFHIYMT 394
+ F + L + +
Sbjct: 323 YMFPSIAKTGRSSLDFCSELLDQHQVATV 351
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 56.0 bits (134), Expect = 3e-09
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)
Query: 140 FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL 199
+ P P + ++ A Y+ D L+ L + + L
Sbjct: 107 LKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTR---AL 163
Query: 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259
+ S NPTG T++ EI+ D Y+ F D + + E
Sbjct: 164 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDD-ARHYSIASLDGMFE 222
Query: 260 HLIGCAQSYAKSMGLYGHRVGCLSILC 286
I ++K+ + G R+G ++
Sbjct: 223 RTITVN-GFSKTFAMTGWRLGFVAAPS 248
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 54.8 bits (131), Expect = 7e-09
Identities = 40/252 (15%), Positives = 76/252 (30%), Gaps = 22/252 (8%)
Query: 132 LFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN 191
LF FQ P + P W ++ + R A + D + I
Sbjct: 104 LFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163
Query: 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251
L+ S +NPTG +E ++ + D Y+ L +
Sbjct: 164 RTK---ALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL----LYEGEHF 216
Query: 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPP 311
+ EH + AK+ + G R+G + + ++R SP
Sbjct: 217 SPGRVAPEHTLTV-NGAAKAFAMTGWRIGYACG-------PKEVIKAMASVSRQSTTSPD 268
Query: 312 VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGM 371
L++ +++ + +R+R L + L LG + +
Sbjct: 269 TIAQWATLEALTNQEASRAFVEM---AREAYRRRRDLLLEGLTALG----LKAVRPSGAF 321
Query: 372 FCFSGLTPYQVD 383
+ +P D
Sbjct: 322 YVLMDTSPIAPD 333
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 435 | |||
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.92 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.89 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.88 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.87 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.87 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.86 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.86 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.82 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.82 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.78 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.77 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.77 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.76 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.76 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.75 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.74 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.74 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.74 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.71 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.71 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.7 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.7 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.68 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.68 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.68 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.67 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.67 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.67 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.67 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.66 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.66 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.64 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.62 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.61 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.61 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.61 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.61 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.59 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.57 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.57 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.56 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.55 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.55 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.54 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.53 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.53 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.52 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.5 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.47 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.42 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.35 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.31 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.31 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.17 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.01 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.56 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.51 |
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3e-60 Score=462.53 Aligned_cols=398 Identities=51% Similarity=0.884 Sum_probs=338.9
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia 102 (435)
|+|++++..|+|+++.+++.+++++++++|||++|.|+|+++.+++.+.++++...+. .+..++|+|+.|.++||++++
T Consensus 2 ~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia 81 (401)
T d7aata_ 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred CccccCCCCCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Confidence 7899999999999999999999888899999999998788888888888888877775 444568999999999999999
Q ss_pred HhHcCCCCccccCCCeeeEecCCchhHHHHHH-HHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 103 KLVYGKDSDVVKEGRSAGVQALSGTGACRLFA-EFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 103 ~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~-~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
+++.+.+...+.++++....+.+++++..++. .+.++++|||+|++++|+|++|...++.+|++++.+|+.+++++.++
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (401)
T d7aata_ 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 161 (401)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEecccccccccc
Confidence 99988887777788887444445555555444 35667899999999999999999999999999999999777788999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++.+.+.+....++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..........+....++
T Consensus 162 ~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T d7aata_ 162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcc
Confidence 99999988766678899999999999999999999999999999999999999999999997532222233334455678
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
++++.|+||.++++|||+||+++.....+....+...+....+..+.+++.+.|.+++..+.++.+..++.++.+.++++
T Consensus 242 ~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T d7aata_ 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999985221122222333344444456678899999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++++++.+.+.|++++.+..|.+..+++|||+|++++.+++++|++|+||++.||+|||++++++++|+.+.++|.++++
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCCHHHHHHHHHhCCEEECCCcEEEeccCCHHHHHHHHHHHHHHhC
Confidence 99999999999999987777888899999999999999999999999999999999999998899999999999998763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=1.4e-58 Score=451.86 Aligned_cols=396 Identities=41% Similarity=0.732 Sum_probs=338.5
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVEES 101 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~i 101 (435)
|+|++++..++++++.+++++++++++++|||++|.++++++.+++.+.++++...+. ....++|+|..|.++||+++
T Consensus 3 ~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ai 82 (412)
T d1yaaa_ 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred ChhhcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHH
Confidence 6899999999999999999999988999999999988788888888899998877765 33467899999999999999
Q ss_pred HHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 102 VKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 102 a~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++++.+.+.....++.+....+.++.+++.++..+...+.|||+|++++|+|+.|...++..|++++.+++.+++++.++
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~ 162 (412)
T d1yaaa_ 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD 162 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred HHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccccc
Confidence 99998887766667777644445555555555445667889999999999999999999999999999998777788999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH---HHhhhc
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI---RIFLED 258 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~---~~~~~~ 258 (435)
.+.+++.+.+.+++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++........ ....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T d1yaaa_ 163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred chhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence 99999988876677899999999999999999999999999999999999999999999997532111111 122345
Q ss_pred CCeEEEEecccccccccCCcccEEEEEecChhH-------HHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQ-------AAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.++++++.|+||.++++|+|+||+++ +.+. ...+........+..+.+++.++|.++..++.++.+.++|
T Consensus 243 ~~~~i~~~s~SK~~~~~G~RiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 319 (412)
T d1yaaa_ 243 VSPVFVCQSFAKNAGMYGERVGCFHL---ALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEE---ECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCeEEEEecCCccccCcCceEEEEE---chhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHH
Confidence 67899999999999999999999985 3221 1123333444456778899999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHH
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNY 411 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~ 411 (435)
.++++.++++++++++.+.+.|+.++.+..|.++.+++|||+|++++.+++++|++++||++.||+|||++++++++++.
T Consensus 320 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~ 399 (412)
T d1yaaa_ 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCHHHHHHHHHhCCEEECCCCEEEeccCCHHHHHH
Confidence 99999999999999999999999998877788899999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHh
Q 013839 412 LANAIHEVTRS 422 (435)
Q Consensus 412 ~~~~l~~~l~~ 422 (435)
+.++|+++++.
T Consensus 400 l~~ai~~v~k~ 410 (412)
T d1yaaa_ 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=2.3e-58 Score=450.81 Aligned_cols=403 Identities=42% Similarity=0.713 Sum_probs=342.8
Q ss_pred ccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHH
Q 013839 22 TVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVE 99 (435)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~ 99 (435)
..|+|+++++.++++++.++.++++++++++|||++|.|.|+++.+++.+.++++...+. ....++|.|..|.++||+
T Consensus 2 ~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lre 81 (412)
T d1ajsa_ 2 PPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRT 81 (412)
T ss_dssp CCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred CcChhhhCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHH
Confidence 458899999999999999999999888899999999988788888888889998887775 234567999999999999
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH-----HhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee-ec
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR-----RFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH-YY 173 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~-----~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~-~~ 173 (435)
++++++.+.++..++++++....+.++++++..+..++. +++|||+|++++|+|++|..+++..|++.+.++ ..
T Consensus 82 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~ 161 (412)
T d1ajsa_ 82 CASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred HHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccc
Confidence 999999888887788888886677788777766543322 258999999999999999999999999876654 43
Q ss_pred CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 174 DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+++.+..|++.+++.+....++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++...+..+..
T Consensus 162 ~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 241 (412)
T d1ajsa_ 162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred ccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhh
Confidence 45557889988888876655788999999999999999999999999999999999999999999999876332233444
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
...+..+.++++.|+||.++++|+|+||+++.....+....+...+.......+.+++.+.|.++..++.+....+++.+
T Consensus 242 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (412)
T d1ajsa_ 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred hhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHH
Confidence 45566788999999999999999999999862222333334555555556677889999999999999999888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHH
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLA 413 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~ 413 (435)
+++..+++++++++.+.+.|+.++.+..|.++.+++|||.|++++.+++++|++++||++.||+|||++++++++++++.
T Consensus 322 ~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~a 401 (412)
T d1ajsa_ 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVA 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCHHHHHHHHHhCCEEEeCCCeEEeccCCHHHHHHHH
Confidence 99999999999999999999999887778888999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHhhh
Q 013839 414 NAIHEVTRSEQ 424 (435)
Q Consensus 414 ~~l~~~l~~~~ 424 (435)
++|++++++++
T Consensus 402 ~aI~~av~~~~ 412 (412)
T d1ajsa_ 402 TSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999998753
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-58 Score=448.87 Aligned_cols=393 Identities=36% Similarity=0.600 Sum_probs=334.8
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia 102 (435)
||.+++.-+.|+++.+++++++++++++|||++|.|.++.+.+++.+.++++...+. ....++|+|..|.++||++++
T Consensus 1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred CcccCCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHH
Confidence 688999999999999999999888899999999988788887777889999888775 234567999999999999999
Q ss_pred HhHcCCCCccccCCCeeeEecCCchhH--HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 103 KLVYGKDSDVVKEGRSAGVQALSGTGA--CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 103 ~~l~~~~~~~~~~~~v~~~~t~gg~~a--~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
+++.+.+...++++++. .+.+++++ ..+.+.+..++.|||+|++++|+|++|...++.+|++++.+|+.++.++..
T Consensus 81 ~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~ 158 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVA--TIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV 158 (397)
T ss_dssp HHHTCSSCHHHHTTCEE--ECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSC
T ss_pred HHHhhccCCcCCcCcEE--EecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhcccc
Confidence 99988888778888888 55544443 223323566789999999999999999999999999999999976667888
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
|.+.+.+.+...+++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++ +...+......+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~ 237 (397)
T d3tata_ 159 RFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGL 237 (397)
T ss_dssp CHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCH-HHHHHHHHHHHTTTC
T ss_pred chHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCC-cccchhhhhhhhcCC
Confidence 9999888887666788999999999999999999999999999999999999999999999873 222334444455678
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
+++++.|+||.++++|||+||+++.....+....+...+....+..+.+++...|.++...+.+..+..++.++++.+++
T Consensus 238 ~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (397)
T d3tata_ 238 PALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRT 317 (397)
T ss_dssp CCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998532222333344455555556677889999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHH
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l 420 (435)
+++++++.+.+.|..++.+..|.+.++++|+|+|++++.+++++|++|+||++.||+|||++++++++++++.++|++++
T Consensus 318 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcCHHHHHHHHHhCCEEeCCCCEEEeccCCHHHHHHHHHHHHHhC
Confidence 99999999999998887666788889999999999999999999999999999999999998889999999999998764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-57 Score=442.93 Aligned_cols=392 Identities=37% Similarity=0.645 Sum_probs=317.4
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
||.++++.|+++++.+++++++++++++|||++|.|+++++.+++.+.++++...+. .+..++|+|..|.++||+++++
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~ 80 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CccccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHH
Confidence 588999999999999999998888889999999988788887887788888777665 3446689999999999999999
Q ss_pred hHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChH
Q 013839 104 LVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 183 (435)
++.+.+.....++.+....+.+++++..++..++..+.+||+|++|+|+|++|...+..+|++++.+++.+++++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccc
Confidence 99888776666777765667777777777766666789999999999999999999999999999999876777778888
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++++...+..++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..........+..++.+
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~ 239 (396)
T d2q7wa1 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEE
T ss_pred hHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhccccc
Confidence 88887776667889999999999999999999999999999999999999999999998741 22233444455678899
Q ss_pred EEecccccccccCCcccEEEEEecChhH---HHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQ---AAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++.|+||.++++|+|+||+++ +... ............+..+.+++...|.++..++.++.....+.++++.+++
T Consensus 240 ~~~s~sk~~~~~G~R~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (396)
T d2q7wa1 240 VASSYSKNFGLYNERVGACTL---VAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ 316 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEE---ECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-C
T ss_pred ccccccccccccCCCcccccc---chhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999975 3331 1222222223334567889999999999999998888888899999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHH
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l 420 (435)
+++++++.+.+.|++++.+..|.+..+++|+|.|++++.+++++|++++||++.||||||++++++++|+++.++|++++
T Consensus 317 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCHHHHHHHHHhCCEEECCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 99999999999999998877788889999999999999999999999999999999999999889999999999998864
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.8e-56 Score=435.10 Aligned_cols=391 Identities=33% Similarity=0.578 Sum_probs=329.6
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+++++++.++++++.+++++++++.+++|||++|.|.++++.+++.+.+++++..+. ....++|.|..|.++||+++++
T Consensus 1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~ 80 (394)
T d2ay1a_ 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Confidence 578899999999999999999888899999999998888888888889998888775 3335689999999999999999
Q ss_pred hHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChH
Q 013839 104 LVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 183 (435)
++.+.+.....++.+ ++.+|+++..+.+.++..+.+||+|++|+|+|++|...++.+|++++.+++.+++++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~ 157 (394)
T d2ay1a_ 81 LILGDGLKSETTATL---ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFE 157 (394)
T ss_dssp HHHGGGCCGGGEEEE---EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHH
T ss_pred HHhccccccccccce---eccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccch
Confidence 996655443223333 57777777666655777789999999999999999999999999999999876677788888
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++++.....+++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..............+++
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~ 236 (394)
T d2ay1a_ 158 GMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEE
T ss_pred hHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc-ccchhhhhhhhhccccc
Confidence 88888877667889999999999999999999999999999999999999999999998741 12222222233456789
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
++.|+||.++++|+|+||+++.....+....+...+.........+++...|.++...+.++.+.++|.++++.++++++
T Consensus 237 ~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (394)
T d2ay1a_ 237 IAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGML 316 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998622222223333444444455667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
++++.+.+.|++++.+..|.+..+++|||.|++++.+++++|++++||++.||+|||++++++++++++.++|.++
T Consensus 317 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 317 RLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCceeeECCCceeEEecCcCHHHHHHHHHhCCEEecCCCEEEecCCCHHHHHHHHHHHHHh
Confidence 9999999999998876678888999999999999999999999999999999999999988999999999998875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.9e-54 Score=419.29 Aligned_cols=355 Identities=14% Similarity=0.128 Sum_probs=295.5
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG 116 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 116 (435)
+.+..++++. .++++|+|++|+| ++ ++|+.+++.+...+..+ ..+|+++.|.++||+++++++...++..++++
T Consensus 18 i~~~a~~~~~-~g~~vi~l~~G~p-~~---~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~ 91 (388)
T d1j32a_ 18 IDAKAKAMKA-EGIDVCSFSAGEP-DF---NTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGAD 91 (388)
T ss_dssp THHHHHHHHT-TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHHHHHHHH-CCCCeEECCCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcccCCCCc
Confidence 4566666643 6789999999997 44 44555545444455454 56799999999999999999854444445688
Q ss_pred CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+|+ +|+|+++++.++ +.++++|||+|++++|+|++|...++..|++++.++..++++|.+|+++|++++. +++
T Consensus 92 ~i~--it~G~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~ 164 (388)
T d1j32a_ 92 NIL--VTNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT---PKT 164 (388)
T ss_dssp GEE--EESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC---TTE
T ss_pred eEE--EcCCHHHHHHHH--HHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC---CCC
Confidence 999 999999999998 7778899999999999999999999999999999988656678999999999987 788
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEeccccccccc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++++||||||.+++.+++++|+++|++|+++||+||+|..+.+++. ...++... .+..+++++++||||.|+++
T Consensus 165 ~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~i~~~S~SK~~~~~ 242 (388)
T d1j32a_ 165 KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred eEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCC--CCCCHHHhCcccccceeEecCChhhhhcc
Confidence 9999999999999999999999999999999999999999999988752 22233222 12236899999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ +++.+.+.......+++...|.++...+.... +++++.++.++++++.+.+.|++
T Consensus 243 GlRvG~~~~---~~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~ 309 (388)
T d1j32a_ 243 GWRVGFLAG---PVP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------DCVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp TTCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHeEEEEE---CHH----HHHHHHHhhhhccccccHHHHHHHhhcccchH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999964 888 88888877777778899999999888887654 78889999999999999999988
Q ss_pred hCCCCCccccccCcceeEecCC-----C-HHHHHHHhhhccEEEeCC---C-----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL-----T-PYQVDRLAKEFHIYMTQD---G-----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~-----~-~~~~~~ll~~~gI~i~pg---g-----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++. +.+..|++|+|+|+.+ + .++++++++++||.+.|| | |++|+. +++++++++++|+++++
T Consensus 310 ~~g---~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~-~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 310 MPG---LECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-DLDTIKRGMERLEKFLH 385 (388)
T ss_dssp CTT---CBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred CCC---CEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence 742 6788899999999865 3 356688888899999997 2 999976 88999999999999998
Q ss_pred hh
Q 013839 422 SE 423 (435)
Q Consensus 422 ~~ 423 (435)
.+
T Consensus 386 ~l 387 (388)
T d1j32a_ 386 GI 387 (388)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-53 Score=414.75 Aligned_cols=366 Identities=16% Similarity=0.151 Sum_probs=299.8
Q ss_pred cccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc
Q 013839 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
+++...+++.+.++.+... ..+++|+|+.|+| ++ ++|+.+.+.+..++..+ ..+|+++.|.++||+++++++.
T Consensus 4 ~~~~~~~~s~ir~~~~~~~--~~~dvi~l~~g~p-~~---~~p~~v~~~~~~a~~~~-~~~Y~~~~G~~~lr~aia~~~~ 76 (388)
T d1gdea_ 4 DRLELVSASEIRKLFDIAA--GMKDVISLGIGEP-DF---DTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLK 76 (388)
T ss_dssp HHHHHSCCCHHHHHHHHHH--HCTTCEECCCCSC-CS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhhhCCccHHHHHHHHHh--CCCCeEECCCCCC-CC---CCCHHHHHHHHHHHhcC-ccCCCCCcCCHHHHHHHHHHHH
Confidence 3444556666766665554 3478999999996 43 44444444444555454 5679999999999999999983
Q ss_pred CC-CCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhH
Q 013839 107 GK-DSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 107 ~~-~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 185 (435)
.. ......+++|. +|+|+++++.++ +.+++.|||+|++++|+|..|...++..|++++.+++.++++|++|+++|
T Consensus 77 ~~~~~~~~~~~~i~--~t~G~~~~l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 152 (388)
T d1gdea_ 77 KQNGIEADPKTEIM--VLLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDEL 152 (388)
T ss_dssp HHHCCCCCTTTSEE--EESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHH
T ss_pred hhccccCCChheee--eccCcchHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHH
Confidence 21 11122367888 899999999888 78889999999999999999999999999999999986666789999999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
++.++ ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+....+++|++
T Consensus 153 ~~~~~---~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~ 227 (388)
T d1gdea_ 153 KKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITV 227 (388)
T ss_dssp HHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEE
T ss_pred HHhCc---cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC--CCCChhhccCCCCeEEEE
Confidence 99887 6789999999999999999999999999999999999999999999987642 233444454556789999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
+||||.|+++|+|+||+++ +++ ++..+.+.......+++.+.|.++..++.+.. +.++++..++.++++
T Consensus 228 ~S~SK~~~~~GlR~G~ii~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~ 296 (388)
T d1gdea_ 228 NGFSKTFAMTGWRLGFVAA---PSW----IIERMVKFQMYNATCPVTFIQYAAAKALKDER----SWKAVEEMRKEYDRR 296 (388)
T ss_dssp EESTTTTTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHH
T ss_pred eCChhhccCccccEEEEEe---ecc----chhhhhhccccccccccccchhhHHHHHhhcc----chhHHHHHHHHHHHh
Confidence 9999999999999999974 888 88888887777788899999999999998764 446677888889999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCC-----CH-HHHHHHhhhccEEEeCC---C-------cEEeccCCCCcH
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNV 409 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i 409 (435)
++.+.+.|...+ +.+..|++|+|+|+.+ +. ++++++++++||.+.|| | |||++. +++++
T Consensus 297 ~~~~~~~l~~~~----~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~e~l 371 (388)
T d1gdea_ 297 RKLVWKRLNEMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKL 371 (388)
T ss_dssp HHHHHHHHHHTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHH
T ss_pred hhhhhhhhhhcc----ccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CHHHH
Confidence 999999998887 4577899999999865 33 45678888899999987 1 999975 78899
Q ss_pred HHHHHHHHHHHHhhh
Q 013839 410 NYLANAIHEVTRSEQ 424 (435)
Q Consensus 410 ~~~~~~l~~~l~~~~ 424 (435)
++++++|++++++.+
T Consensus 372 ~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 372 EEAMDRMERVLKERK 386 (388)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998654
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-53 Score=409.69 Aligned_cols=361 Identities=14% Similarity=0.104 Sum_probs=293.5
Q ss_pred cccCCCCCCchhhH---HHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHH
Q 013839 27 DHVAPAAKDPINGV---TEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 27 ~~~~~~~~~~~~~~---~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
.++....++++.+. .++++. .++++|+|++|+| ++ ++|+.+.+.+.+.+..+ ..+|+++.|.++||+++++
T Consensus 6 ~r~~~~~~s~~~~i~~~a~~~~~-~G~~vi~l~~g~p-~~---~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~lR~~ia~ 79 (382)
T d1b5pa_ 6 RRVQAMKPSATVAVNAKALELRR-QGVDLVALTAGEP-DF---DTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAE 79 (382)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHH-TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHh-CCCCeEECCCCCC-CC---CCCHHHHHHHHHHHhcC-CcCCCCCCCCHHHHHHHHh
Confidence 33444445555443 344443 5788999999997 44 45555545444555555 5679999999999999999
Q ss_pred hHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChH
Q 013839 104 LVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 183 (435)
++....+..+++++|+ +|+|+++++.++ +.+++++||+|++++|+|++|...++..|++++.+++.+++++.+|++
T Consensus 80 ~~~~~~~~~~~~~~i~--it~G~~~al~~~--~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 155 (382)
T d1b5pa_ 80 KFRRENGLSVTPEETI--VTVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE 155 (382)
T ss_dssp HHHHTTCCCCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHH
T ss_pred hhhhhcccccccccce--ecCCHHHHHHHH--HHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence 9966655567789999 999999999998 778899999999999999999999999999999999865667899999
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++++.+. ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...+. ....++++
T Consensus 156 ~l~~~~~---~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~---~~~~~~~i 227 (382)
T d1b5pa_ 156 RVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE--HFSPG---RVAPEHTL 227 (382)
T ss_dssp HHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--CCCGG---GTCTTTEE
T ss_pred HHHHhCC---CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC--CCCHH---HcCCCCEE
Confidence 9999887 6789999999999999999999999999999999999999999999998652 12222 23357899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++|+||.|+++|+|+||+++ +++ +++.+.+.......+++.+.|.++...+..... +..+....++.++
T Consensus 228 ~~~s~SK~~~~~GlR~G~~~~---~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 297 (382)
T d1b5pa_ 228 TVNGAAKAFAMTGWRIGYACG---PKE----VIKAMASVSRQSTTSPDTIAQWATLEALTNQEA---SRAFVEMAREAYR 297 (382)
T ss_dssp EEEESTTTTTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHH---HHHHHHHHHHHHH
T ss_pred EEecchhhccCcHhheEEEEE---CHH----HHHHHHHHHHhcccCcccccccccccccccccc---hhHHHHHHHHHHH
Confidence 999999999999999999964 888 888888877777788899998888887765432 3356677888899
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVN 410 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~ 410 (435)
++++.+.+.+...| +.+..|++|+|+|+.+ +...+.+++.++||.+.||. ||+++. ++|+++
T Consensus 298 ~~~~~~~~~l~~~g----~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~-~~e~l~ 372 (382)
T d1b5pa_ 298 RRRDLLLEGLTALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYAT-SEENLR 372 (382)
T ss_dssp HHHHHHHHHHHHHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCS-CHHHHH
T ss_pred hhhhHHHHHHhhcC----CeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcC-CHHHHH
Confidence 99999999999887 4677899999999855 45556555667899999982 999976 888999
Q ss_pred HHHHHHHHHH
Q 013839 411 YLANAIHEVT 420 (435)
Q Consensus 411 ~~~~~l~~~l 420 (435)
+++++|++++
T Consensus 373 ~al~rl~~~L 382 (382)
T d1b5pa_ 373 KALERFARVL 382 (382)
T ss_dssp HHHHHGGGGC
T ss_pred HHHHHHHHhC
Confidence 9999988753
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-51 Score=399.15 Aligned_cols=358 Identities=13% Similarity=0.090 Sum_probs=288.1
Q ss_pred hHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCe
Q 013839 39 GVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRS 118 (435)
Q Consensus 39 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v 118 (435)
...+++++ .+.++|+|++|+|. ...+++|..+.+++..++..+ ..+|+++.|.++||+++++++....+..++++++
T Consensus 20 ~~a~~l~~-~G~~vi~l~~G~P~-~~df~~p~~i~~a~~~a~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i 96 (395)
T d1xi9a_ 20 LPARELEK-KGIKVIRLNIGDPV-KFDFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDV 96 (395)
T ss_dssp -CHHHHHH-TTCCCEECCCCCGG-GTTCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHHHH-CCCCeEECCCCCCC-CCCCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHhhhhccccccccccc
Confidence 34455543 57889999999972 223355555555555555554 5679999999999999999985444444558899
Q ss_pred eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEE
Q 013839 119 AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFF 198 (435)
Q Consensus 119 ~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ 198 (435)
. +++|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.++..+++++.+|++++++.+. +++++
T Consensus 97 ~--i~~G~~~~~~~~--~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~---~~~~~ 169 (395)
T d1xi9a_ 97 R--VTAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT---DRTKA 169 (395)
T ss_dssp E--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC---TTEEE
T ss_pred c--cccccchhhhhh--hhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc---ccccE
Confidence 8 999999999888 7888999999999999999999999999999999998667789999999999887 78899
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
+++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .+.... ...+++|+++||||.|+++|+|
T Consensus 170 v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~---~~~~~~-~~~~~vi~~~S~SK~~~~~GlR 245 (395)
T d1xi9a_ 170 IAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH---ISPGSL-TKDVPVIVMNGLSKVYFATGWR 245 (395)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC---CCHHHH-CSSSCEEEEEESTTTTCCGGGC
T ss_pred EEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc---cchhhc-CCCCCEEEEeCcchhcccchhh
Confidence 999999999999999999999999999999999999999999886422 122222 3356899999999999999999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||+++ ..+......+.+.... ......+++.++|.++..++.+.. +++++.++.++++++.+.+.|++++.
T Consensus 246 vG~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~ 317 (395)
T d1xi9a_ 246 LGYMYF-VDPENKLSEVREAIDR-LARIRLCPNTPAQFAAIAGLTGPM------DYLKEYMKKLKERRDYIYKRLNEIPG 317 (395)
T ss_dssp CEEEEE-ECTTCTTHHHHHHHHH-HHHHTCCSCSHHHHHHHHHHHSCC------HHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred cEeeEe-cCHHHHHHHHHHHHHH-hhcCCCCcCHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999974 3344422223333322 234456788899999988887654 78889999999999999999998863
Q ss_pred CCCccccccCcceeEecCC-------CHHHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL-------TPYQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+.+..|++|+|+|+.+ +.+++.++++++||.+.|| | ||+++. +.|++++++++|+++++
T Consensus 318 ---~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal~rl~~~l~ 393 (395)
T d1xi9a_ 318 ---ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMK 393 (395)
T ss_dssp ---EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred ---ceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 5678899999999854 3456788888899999997 2 999976 88999999999999987
Q ss_pred h
Q 013839 422 S 422 (435)
Q Consensus 422 ~ 422 (435)
+
T Consensus 394 e 394 (395)
T d1xi9a_ 394 E 394 (395)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.1e-49 Score=389.85 Aligned_cols=369 Identities=12% Similarity=0.019 Sum_probs=292.2
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESV 102 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia 102 (435)
+.+++...+++...+..+... ..++|||+.|+| +. ++|....+.+.+++... ..++|+++.|.++||++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~~I~L~~G~P-d~---~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA 76 (418)
T d2r5ea1 4 LPKRYQGSTKSVWVEYIQLAA---QYKPLNLGQGFP-DY---HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALS 76 (418)
T ss_dssp CCGGGTTCCCCHHHHHHHHHH---HHCCEECSSSCC-SS---CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHH
T ss_pred hhhhhcCCCCCHHHHHHHHhc---CCCCEEccCCCC-CC---CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHH
Confidence 456777777766655544442 257899999997 54 34444444444444422 2457999999999999999
Q ss_pred HhHcCCCCcccc-CCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-----
Q 013839 103 KLVYGKDSDVVK-EGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD----- 176 (435)
Q Consensus 103 ~~l~~~~~~~~~-~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----- 176 (435)
+++....+..++ +++|+ +|+|+++|+.++ +..+++|||.|++++|+|+.+...+...|.+++.+++.++.
T Consensus 77 ~~~~~~~g~~~~p~~~I~--it~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 152 (418)
T d2r5ea1 77 KLYSQLVDRTINPMTEVL--VTVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTI 152 (418)
T ss_dssp HHHHHHHTSCCCTTTSEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCE
T ss_pred HHHHHHhCCCCCccceEE--EcCCCchhhhhh--hhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccch
Confidence 998433333334 47898 999999999998 78889999999999999999999999999999998874322
Q ss_pred ---CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 177 ---SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 177 ---~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
.+.++.+++.+... ..++++++++||||||.+++.+++++|+++|++|+++||+||+|..+.+++. ...++.
T Consensus 153 ~~~~~~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~s~~ 227 (418)
T d2r5ea1 153 SSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRIC 227 (418)
T ss_dssp EGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGG
T ss_pred hhhhhhhhHHHHhhhhh---ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCC--cccccc
Confidence 24567788777765 7889999999999999999999999999999999999999999999998752 233444
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh-hHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN-LKSLWI 332 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-l~~~~~ 332 (435)
.+.+..++++++.|+||.++++|+|+||+++ +++ +++.+.+.......+++.+.|.+++..+.... ..+..+
T Consensus 228 ~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~---~~~----~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 300 (418)
T d2r5ea1 228 TLPGMWERTITIGSAGKTFSLTGWKIGWAYG---PEA----LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPE 300 (418)
T ss_dssp GSTTTGGGEEEEEEHHHHTTCGGGCCEEEES---CHH----HHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred ccccccceeeeeecCCccccCCCcccccccc---cch----hhhhhhhcccccccccccchhhhccccccccccccccch
Confidence 5555667999999999999999999999963 888 88888887777778888999988876654221 011113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-----------------CHHHHHHHhhhccEEEeC
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----------------TPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~~~ll~~~gI~i~p 395 (435)
+++++.++.++.+++.+.+.|+++| +.+..|+||+|+|+++ +.+++..+++++||.+.|
T Consensus 301 ~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~P 376 (418)
T d2r5ea1 301 CYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIP 376 (418)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTT----CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBC
T ss_pred hhHHHHHHHHHHhhhhHHhhHhhcC----CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeC
Confidence 6778899999999999999999987 5788899999999743 235678888889999999
Q ss_pred C-------------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 396 D-------------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 396 g-------------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
| | ||||+. ++|++++++++|++++.
T Consensus 377 G~~F~~~~~~~~g~~~iRis~~~-~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 377 PSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKG 416 (418)
T ss_dssp GGGGSCGGGHHHHTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred chhhCCCCCccCCCCEEEEEecC-CHHHHHHHHHHHHHHHc
Confidence 7 1 999976 88999999999998764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.9e-49 Score=381.47 Aligned_cols=349 Identities=16% Similarity=0.149 Sum_probs=284.8
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
.+.+..++..+ .++++|+|+.|+| +. ++|..+.+++.+.+..+ ..+|+++.|.++||+++++++....+.++++
T Consensus 15 ~~~~~a~~~~~-~G~~vI~l~~G~p-~~---~~p~~i~~~~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~ 88 (375)
T d1o4sa_ 15 ELDAKAKALIK-KGEDVINLTAGEP-DF---PTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYKKDISP 88 (375)
T ss_dssp HHHHHHHHHHH-TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG
T ss_pred HHHHHHHHHHH-CCCCeEECCCcCC-CC---CCCHHHHHHHHHHHhcC-CcCCCCCcCCHHHHHHHHhhhhhcccccccc
Confidence 34455555544 5688999999997 43 44555555555555444 5679999999999999999985444444558
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
++++ +|+|+++|+.++ +.+++++||+|++++|+|+.+...+...|...+.++..+++++.+|.+.++.... ++
T Consensus 89 ~~i~--~t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 161 (375)
T d1o4sa_ 89 DQVV--VTNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---GK 161 (375)
T ss_dssp GGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC---TT
T ss_pred cccc--ccCcHHHHHHHH--HHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhc---cC
Confidence 8988 999999999988 8888999999999999999999999999999888887656678888888887766 67
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++... .......+..+++++++|+||.|+++
T Consensus 162 ~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~---~~~~~~~~~~~~~i~~~S~SK~~~l~ 238 (375)
T d1o4sa_ 162 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEF---TSILDVSEGFDRIVYINGFSKSHSMT 238 (375)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCC---CCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccc---cccccccCCCCCEEEEeechhhccCC
Confidence 899999999999999999999999999999999999999999998886422 22223446678999999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ ++..+...........+...+......+... ....++.++++++.+.+.|++
T Consensus 239 G~R~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~~~~~~~l~~ 302 (375)
T d1o4sa_ 239 GWRVGYLIS---SEK----VATAVSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQTFKERKNFVVERLKK 302 (375)
T ss_dssp GGCCEEEEC---CHH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc---ccc----chhhhhhhhccccccccccchhhhhhhcccc---------hhhhHHHHHHHHHHHHHHHHh
Confidence 999999964 777 7777777666666777777777776666543 345567788899999999998
Q ss_pred hCCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.| +.+..|++|+|+|+.+ +.+++.++++++||.+.|| | ||+++. +++++++++++|+++++
T Consensus 303 ~g----~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~-~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 303 MG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALDRIEDFLN 374 (375)
T ss_dssp TT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred cC----ceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 87 5678899999999976 3567788888899999997 2 999976 88999999999999875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-50 Score=392.76 Aligned_cols=365 Identities=13% Similarity=0.071 Sum_probs=290.6
Q ss_pred ccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHc
Q 013839 28 HVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
|+....+++..+..+.. .++++|+|++|+| +. ++|..+.+.+.+.+..+ ..++|+++.|.++||+++++++.
T Consensus 6 r~~~~~~~~~~~~~~~~---~~~dvI~l~~G~p-~~---~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~ 78 (418)
T d1w7la_ 6 RLDGIDYNPWVEFVKLA---SEHDVVNLGQGFP-DF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFG 78 (418)
T ss_dssp GGTTCCCCTHHHHHHHH---HTSCCEECCCCSC-SS---CCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHh---CCCCCEECCCCCC-CC---CCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHH
Confidence 44455555555554443 3578999999997 44 44444444344444433 24579999999999999999984
Q ss_pred CCCCcccc-CCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC----------C
Q 013839 107 GKDSDVVK-EGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD----------P 175 (435)
Q Consensus 107 ~~~~~~~~-~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----------~ 175 (435)
...+.+++ .++|+ +|+|+++|+.++ +.+++.+||+|++++|+|+.|...+...|++++.++..+ +
T Consensus 79 ~~~g~~~~~~~~I~--it~G~~~al~~~--~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~ 154 (418)
T d1w7la_ 79 ELLGQEIDPLRNVL--VTVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSS 154 (418)
T ss_dssp HHHTCCCCHHHHEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEG
T ss_pred HHhCCCCCccccee--eccCcHHHHHHH--HHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccc
Confidence 32222333 35788 999999999998 888899999999999999999999999999988887542 2
Q ss_pred CCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 176 DSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 176 ~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++.+|.+++..... +.++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+
T Consensus 155 ~~~~~d~~~~~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~--~~~~~~~~ 229 (418)
T d1w7la_ 155 SNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIASL 229 (418)
T ss_dssp GGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGS
T ss_pred cCcccchhhhhcccc---ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC--CCCCHHHc
Confidence 345677777776665 7889999999999999999999999999999999999999999999998752 33455566
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh-hHHHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN-LKSLWIDE 334 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-l~~~~~~~ 334 (435)
.+..++++++.|+||.+++||+|+||+++ +++ ++..+.+.......+++.+.|.++..++.+.. ..++..++
T Consensus 230 ~~~~~~~i~~~S~SK~~~~pG~RvG~~v~---~~~----~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 302 (418)
T d1w7la_ 230 PGMWERTLTIGSAGKTFSATGWKVGWVLG---PDH----IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSY 302 (418)
T ss_dssp TTTGGGEEEEEEHHHHTTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSH
T ss_pred cccccccceecccCccccCCCCccccccc---chh----hhhhhccccccccccccchhhHHHHHHhhhccccccccccc
Confidence 66668999999999999999999999974 888 88889888888888999999999888876432 11222366
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------------------CHHHHHHHhhhccEEEeCC
Q 013839 335 VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------------------TPYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------------------~~~~~~~ll~~~gI~i~pg 396 (435)
....++.++++++.+.+.|+++| +.+..|+||+|+|+.+ +.+++.++|+++||.+.||
T Consensus 303 ~~~~~~~~~~~r~~l~~~L~~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG 378 (418)
T d1w7la_ 303 FVQFPQAMQRCRDHMIRSLQSVG----LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPV 378 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT----CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEG
T ss_pred cccchhhhhhhhhhhhhhhhhcC----CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcc
Confidence 78889999999999999999987 5788899999999854 2356788999999999987
Q ss_pred C---------------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 397 G---------------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 397 g---------------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
. ||||+. +++++++++++|+++.
T Consensus 379 ~~F~~~~~~~~~~~~iRis~~~-~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 379 SIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWK 416 (418)
T ss_dssp GGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHH
T ss_pred hhhcCCCccCCCCCEEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 1 999976 8888999999998864
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=7.6e-49 Score=383.23 Aligned_cols=367 Identities=14% Similarity=0.125 Sum_probs=280.2
Q ss_pred CchhhHHHHHhcCCC-CCeeeeecceecCCCCCcccchHHHHHH-HHhcCCCCCCCCCCcccHHHHHHHHHhHcCC----
Q 013839 35 DPINGVTEAFLADPS-PYKINLGVGAYRDDKGRPVVLQCVREAE-AKIAGSEFLESISASVSTKMVEESVKLVYGK---- 108 (435)
Q Consensus 35 ~~~~~~~~~~~~~~~-~~~i~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~---- 108 (435)
+++..+.+.++..++ .++|+|++|+| +.+.+..+.+.+.+++ ..+......+|+|..|.++||+++|+++...
T Consensus 14 ~pir~~~~~~~~~~~~~~vI~L~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~ 92 (412)
T d1bw0a_ 14 NPIRTVSDNAKPSPSPKPIIKLSVGDP-TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHK 92 (412)
T ss_dssp CHHHHHHHTCCCCCSCSCCEECCCCCT-TTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHhcCCCCCCCCcEECcCCCC-CCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcc
Confidence 345444454543333 47899999997 5444344444444333 4444444678999999999999999998322
Q ss_pred --CCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHH
Q 013839 109 --DSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 109 --~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
....+++++|+ +|+|+++|+.++ +.+++++||+|++++|+|+.|...++..|++++.+++..++++.+++++++
T Consensus 93 ~~~~~~~~~~~I~--it~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~ 168 (412)
T d1bw0a_ 93 EELKSTIVKDNVV--LCSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIR 168 (412)
T ss_dssp TTTGGGCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHH
T ss_pred cccCCCCCCCeEE--Eecccccchhhh--hhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHH
Confidence 12346688999 999999999998 788899999999999999999999999999999999966667889999999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh---hhcCCeEE
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF---LEDEHLIG 263 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i 263 (435)
+... +.++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. ..+.... .+...+++
T Consensus 169 ~~~~---~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 243 (412)
T d1bw0a_ 169 RLKD---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKD--PNATFTSVADFETTVPRV 243 (412)
T ss_dssp HHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSC--TTCCCCCTTSSCCSCCEE
T ss_pred hhhh---ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCC--Cccccccccccccccccc
Confidence 8887 78899999999999999999999999999999999999999999999987532 1111111 12345789
Q ss_pred EEecccccccccCCcccEEEEEecChh-HHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSK-QAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+++|+||.++++|+|+||+++ . ++. ....++....+.... ..+++...|.++...+.+.. ++++.+.++++
T Consensus 244 ~~~s~SK~~~~~G~RvG~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 315 (412)
T d1bw0a_ 244 ILGGTAKNLVVPGWRLGWLLY-V-DPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTP-----QEHLDQIVAKI 315 (412)
T ss_dssp EEEESTTTTSCGGGCCEEEEE-E-CTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHH
T ss_pred cccccCccCccCCCCcccccc-c-chhhcchhhhhhhcccccc-ccCCchhhhhhccccccccc-----ccccccccchh
Confidence 999999999999999999974 2 211 011244444443333 34455565555555443321 37888999999
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----------CHHHHHHHhhhccEEEeCC------C--cEEeccC
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----------TPYQVDRLAKEFHIYMTQD------G--RISMAGV 404 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~ll~~~gI~i~pg------g--Ris~~~~ 404 (435)
+++++.+.+.|.+.. ++.+..|+||+|+|+.+ +.++++++++++||.+.|| | |||++.
T Consensus 316 ~~~r~~~~~~l~~~~---g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~- 391 (412)
T d1bw0a_ 316 EESAMYLYNHIGECI---GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR- 391 (412)
T ss_dssp HHHHHHHHHHHTTST---TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-
T ss_pred HHHHHHHHHHHHHhc---CceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcC-
Confidence 999999999997653 26788899999999743 2457788988899999997 2 999976
Q ss_pred CCCcHHHHHHHHHHHHHhh
Q 013839 405 TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++++|++++++.
T Consensus 392 ~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 392 PVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8899999999999998753
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-49 Score=380.65 Aligned_cols=356 Identities=12% Similarity=0.081 Sum_probs=289.6
Q ss_pred cccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc
Q 013839 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
++++..+. .++..+.++. .++++|||+.|+| ++ ++|....+.+...+..+ ..+|++..|.++||++||+++.
T Consensus 6 ~~~~~~~~-~~~~~~~~~a--~~~~~i~l~~G~P-d~---~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~LReaia~~~~ 77 (382)
T d1u08a_ 6 SKLPQLGT-TIFTQMSALA--QQHQAINLSQGFP-DF---DGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTE 77 (382)
T ss_dssp CSCCCCCC-CHHHHHHHHH--HHTTCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhCCCCCC-cHHHHHHHHh--ccCCCEEccCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHHH
Confidence 44555553 5666666665 3468999999997 54 44444434444454444 6789999999999999999984
Q ss_pred CCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhH
Q 013839 107 GKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 107 ~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 185 (435)
...+..+.++ +|+ +|+|+++++.++ +.+++++||.|++++|+|+.+...+...|+..+.++. +++++.+|++++
T Consensus 78 ~~~g~~~~~~~~I~--vt~G~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l 152 (382)
T d1u08a_ 78 RLYGYQPDADSDIT--VTAGATEALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQEF 152 (382)
T ss_dssp HHHSCCCCTTTTEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHHHH
T ss_pred HHhCCCCCCCceEE--eccchHHHHHHH--HhhcccccceEEEecccccchhhhhhhccccceeccc-ccccccCCHHHH
Confidence 3323233344 588 899999999998 8888999999999999999999999999988888877 466788999999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
++.+. ++++++++++||||||.+++.+++++|+++|++++++++.|++|..+.+.+.. ...........+++|++
T Consensus 153 ~~~~~---~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~ 227 (382)
T d1u08a_ 153 AALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG--HASVLAHPQLRERAVAV 227 (382)
T ss_dssp HHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC--CCCGGGSHHHHTTEEEE
T ss_pred hhhhc---cCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccc--cccccccccccCcEEEE
Confidence 98887 67899999999999999999999999999999999999999999888876432 22222233445789999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
.|+||.++++|+|+||+++ +++ ++..+.+.......+++.+.|.++..++.... ++.+..++.++++
T Consensus 228 ~s~SK~~~~pG~RiG~~v~---~~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~ 294 (382)
T d1u08a_ 228 SSFGKTYHMTGWKVGYCVA---PAP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEP------EHYLALPDFYRQK 294 (382)
T ss_dssp EEHHHHTTCGGGCCEEEEC---CHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT------HHHHTHHHHHHHH
T ss_pred eeccccccCCcccchhhhc---cch----hHHHHHhhhcccccccccccccccccccccch------HHHHHHHHHHHhh
Confidence 9999999999999999964 888 88888887777788999999999999997554 7788899999999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCC------C-HHHHHHHhhhccEEEeCC--------C----cEEeccCCC
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------T-PYQVDRLAKEFHIYMTQD--------G----RISMAGVTT 406 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~-~~~~~~ll~~~gI~i~pg--------g----Ris~~~~~~ 406 (435)
++.+.+.++..| +.+..++||+|+|+.+ + .+++.++++++||.+.|| + ||||+. ++
T Consensus 295 ~~~l~~~~~~~g----~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~ 369 (382)
T d1u08a_ 295 RDILVNALNESR----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KE 369 (382)
T ss_dssp HHHHHHHTTSSS----CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CH
T ss_pred hhhhhhhhccCC----cEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CH
Confidence 999998887666 5788899999999844 3 356788888899999987 1 999976 88
Q ss_pred CcHHHHHHHHHH
Q 013839 407 GNVNYLANAIHE 418 (435)
Q Consensus 407 e~i~~~~~~l~~ 418 (435)
|++++++++|++
T Consensus 370 e~l~~al~RL~~ 381 (382)
T d1u08a_ 370 STLLAAAERLRQ 381 (382)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.2e-47 Score=372.25 Aligned_cols=357 Identities=10% Similarity=0.045 Sum_probs=273.0
Q ss_pred hHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCe
Q 013839 39 GVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRS 118 (435)
Q Consensus 39 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v 118 (435)
+.........++++|+|++|+| |+ ++|+.+++++.+++..+ .++|+ .|.++||+++++++...++..+.+++|
T Consensus 20 ~~~~~~~~~~g~~vi~l~~g~p-df---~~p~~v~~al~~~~~~~-~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I 92 (394)
T d1c7na_ 20 DLMYSQNPEVGNEVVPLSVADM-EF---KNPPELIEGLKKYLDET-VLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWI 92 (394)
T ss_dssp HHHHHHCTTCCTTCCCCCSSSC-SS---CCCHHHHHHHHHHHHHC-CCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHHhHhcCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhCC-CcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcce
Confidence 3333333445679999999997 55 56666666555565544 56685 478999999999995443444558899
Q ss_pred eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHhHHHHhhcCCCCcE
Q 013839 119 AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 119 ~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+ +|+|+++++.++ +.++++|||+|++++|+|.++...+...|.+.+.++.... ..+.+|.+.++..+.. ++++
T Consensus 93 ~--vt~G~~~al~~~--~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~~~ 166 (394)
T d1c7na_ 93 I--NTAGVVPAVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNK 166 (394)
T ss_dssp E--EESSHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEE
T ss_pred E--eeccchhhhhhh--hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcc--ccce
Confidence 9 999999999998 7888999999999999999999999999999888876423 3366888888877752 5689
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH-hhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI-FLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. ..+... ..+..++++++.|+||.|+++|
T Consensus 167 ~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 244 (394)
T d1c7na_ 167 ALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE--HTVFQSIDEQLADKTITFTAPSKTFNIAG 244 (394)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred EEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCcc--ccchhhhhcccccceeecccccccccccc
Confidence 9999999999999999999999999999999999999999999987532 222211 2233468999999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||++ ++++. +.+.+.+.......++....+.+++...... ..++.++.++.++++++.+.+.++..
T Consensus 245 ~R~g~~~--~~~~~----i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (394)
T d1c7na_ 245 MGMSNII--IKNPD----IRERFTKSRDATSGMPFTTLGYKACEICYKE-----CGKWLDGCIKVIDKNQRIVKDFFEVN 313 (394)
T ss_dssp GCCEEEE--CCCHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--ccChh----hhhhhhhhhhhccccccccccchhhhhhhcc-----hhhhhcccccccchhhhhhhhhhhcc
Confidence 9999996 44666 6666666555444444444343333332211 13667788888888888888888776
Q ss_pred CCCCCccccccCcceeEecCC-----CH-HHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+. .+.+..++||+|+|+++ +. ++++.+++++||.+.|| | |||++. +++++++++++|++++
T Consensus 314 ~~--~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~eal~rl~~~l 390 (394)
T d1c7na_ 314 HP--EIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKAL 390 (394)
T ss_dssp CT--TSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred cc--ceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHH
Confidence 53 36677899999999854 44 45688888889999987 2 999975 8889999999999999
Q ss_pred Hhhh
Q 013839 421 RSEQ 424 (435)
Q Consensus 421 ~~~~ 424 (435)
++++
T Consensus 391 ~~Lk 394 (394)
T d1c7na_ 391 KDLK 394 (394)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8764
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.5e-47 Score=367.28 Aligned_cols=360 Identities=15% Similarity=0.096 Sum_probs=281.4
Q ss_pred cccCCCCCCchhhHH---HHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHH
Q 013839 27 DHVAPAAKDPINGVT---EAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~---~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+++.+..++++.+++ ++.+ ..+.++|+|+.|+| ++ ++|...++ ++.+...+ ..+|++..|.++||+++++
T Consensus 3 ~r~~~~~~~~i~~l~~~a~~~~-~~g~~vi~l~~G~p-~~---~~p~~~~~-al~~~~~~-~~~Y~~~~G~~~LR~aia~ 75 (389)
T d2gb3a1 3 DRVLLTEESPIRKLVPFAEMAK-KRGVRIHHLNIGQP-DL---KTPEVFFE-RIYENKPE-VVYYSHSAGIWELREAFAS 75 (389)
T ss_dssp HHHHSCCCCTTGGGHHHHHHHH-HTTCEEEECSSCCC-CS---CCCTHHHH-HHHHTCCS-SCCCCCTTCCHHHHHHHHH
T ss_pred hhhhcCCCCHHHHHHHHHHHHH-HcCCCEEECCCCCC-CC---CCCHHHHH-HHHhcCCC-CCCCCCCcCCHHHHHHHHH
Confidence 345555556665543 3332 36788999999997 43 55555444 44444444 6779999999999999999
Q ss_pred hHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChH
Q 013839 104 LVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 183 (435)
++....+..+++++|+ +|+|+++++..+ +..++.+||.|++++|+|+.+...++..|++++.++.. ++++..+.+
T Consensus 76 ~~~~~~g~~~~~~~I~--it~G~~~~l~~~--~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~ 150 (389)
T d2gb3a1 76 YYKRRQRVDVKPENVL--VTNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRR-MEEGFAIPQ 150 (389)
T ss_dssp HHHHTSCCCCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECC-GGGTSCCCT
T ss_pred HHHHhcCCCcccceEE--eccccccccccc--ccccccCCCeEEEeCCCCccccccccccCccccccccc-cccccchhh
Confidence 9965555556789999 999999999888 77788999999999999999999999999999888873 444455555
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
.+...+. +++++++++|||||||.+++.+++++|+++|++|+++||+||+|..+.+++.. . + ......++++
T Consensus 151 ~~~~~~~---~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~--~-~--~~~~~~~~~~ 222 (389)
T d2gb3a1 151 NLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEF--A-S--ALSIESDKVV 222 (389)
T ss_dssp TGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC--C-C--GGGSCCTTEE
T ss_pred hhhhhcc---cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccc--c-c--cccccccccc
Confidence 5555554 67899999999999999999999999999999999999999999999987521 1 1 1223457899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
++.|+||.++++|+|+||++ +.++. +....... .....+++.+.|.++..++...+ ++++..++.++
T Consensus 223 v~~s~sK~~~~~GlRiG~~~--~~~~~----i~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~ 289 (389)
T d2gb3a1 223 VIDSVSKKFSACGARVGCLI--TRNEE----LISHAMKL-AQGRLAPPLLEQIGSVGLLNLDD------SFFDFVRETYR 289 (389)
T ss_dssp EEEESTTTTTCGGGCCEEEE--CSCHH----HHHHHHHH-HHHSCCCCHHHHHHHHHHHTCCH------HHHHHHHHHHH
T ss_pred ccccccccccCcccceeeee--ccchh----HHHHHhhh-hhccccccccccccccccccccc------hhccccccccc
Confidence 99999999999999999996 43444 44444443 34456777888888888887553 77888999999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC---C-HHHHHHHhhh-----ccEEEeCC---------C----cEEe
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---T-PYQVDRLAKE-----FHIYMTQD---------G----RISM 401 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~ll~~-----~gI~i~pg---------g----Ris~ 401 (435)
++++.+.+.|+++|. ..+..+++|+|+|+.+ + .+++.+++++ +||.+.|| | ||++
T Consensus 290 ~~~~~~~~~L~~~~~---~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~ 366 (389)
T d2gb3a1 290 ERVETVLKKLEEHGL---KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIAC 366 (389)
T ss_dssp HHHHHHHHHHHHTTC---CCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEEC
T ss_pred ccchhhhhhhhhhcc---ccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEE
Confidence 999999999999975 3567789999999976 3 4456777665 47788775 1 9999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+. +++++++++++|++++++.
T Consensus 367 ~~-~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 367 VL-EKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHHh
Confidence 75 8899999999999998864
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-47 Score=371.44 Aligned_cols=355 Identities=17% Similarity=0.169 Sum_probs=280.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCc-cccCCCeeeEec
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSD-VVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~~~v~~~~t 123 (435)
.++++|+|+.|.| +.. ..|.+.++++...+.. ....+|+++.|.++||++|++++....+. .+++++|+ +|
T Consensus 36 ~~~~~I~l~~G~P-d~~--~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~--it 110 (420)
T d1vp4a_ 36 ADKDAISFGGGVP-DPE--TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLI--FT 110 (420)
T ss_dssp TSTTCEECCCCSC-CGG--GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEE--EE
T ss_pred CCCCcEecCCcCC-CCc--cCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeE--ec
Confidence 5689999999997 432 3455556666555431 12457999999999999999998433222 24588999 99
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc------CCCCcE
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN------APDSSF 197 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~------~~~~~~ 197 (435)
+|+++++.++ +.+++.|||+|++++|+|..|...++..|++++.++.. +. ++|++.+...+.+ ..+.+.
T Consensus 111 ~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 185 (420)
T d1vp4a_ 111 VGSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLE-DD--GMDLNVLERKLSEFDKNGKIKQVKF 185 (420)
T ss_dssp EHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred cchhhhHHHH--HHhhhccccccccccccccchhHHHHHHhhhccccccc-cc--ccccchhhhhhhhhHHHhhccccce
Confidence 9999999988 77788999999999999999999999999999999983 33 6788877655432 123456
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~ 277 (435)
++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++.. ..+... .+..+++++++|+||.++ +|+
T Consensus 186 ~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~--~~~~~~-~~~~~~~i~~~s~sk~~~-~G~ 261 (420)
T d1vp4a_ 186 IYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET--VDPIFK-IGGPERVVLLNTFSKVLA-PGL 261 (420)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC--CCCHHH-HHCTTTEEEEEESTTTTC-GGG
T ss_pred eeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcc--cccccc-cccccceeEEeccccccc-ccc
Confidence 7889999999999999999999999999999999999999999987522 112222 245678999999999986 999
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
|+||+++ +++ +++++.+.......+++.+.|.+++.++.... +.++++..++.++++++.+.+.|++..
T Consensus 262 RiG~~~~---~~~----~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 262 RIGMVAG---SKE----FIRKIVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp CEEEEEC---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccc---cch----hhhhhhhhhhhccccCchhhhhhhhhhccccc----ccccchhHHHHhhhhcccchhhhhhhh
Confidence 9999964 888 88888888777778899999999888887554 346677778888888888888887763
Q ss_pred CC-CCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCC---C---------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 358 SS-LNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQD---G---------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 358 ~~-~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pg---g---------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
.. .++.+..|+||+|+|+.+ +...+.++++++||.+.|| | ||||+..+++++++++++|++++
T Consensus 331 ~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l 410 (420)
T d1vp4a_ 331 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVV 410 (420)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHH
Confidence 21 146788899999999965 3334444567899999987 1 99997667889999999999999
Q ss_pred Hhhhhhh
Q 013839 421 RSEQETA 427 (435)
Q Consensus 421 ~~~~~~~ 427 (435)
++...++
T Consensus 411 ~~~~~~~ 417 (420)
T d1vp4a_ 411 LEYGKEK 417 (420)
T ss_dssp HHHHHHT
T ss_pred HHhhHhh
Confidence 8877443
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.5e-46 Score=365.84 Aligned_cols=354 Identities=11% Similarity=0.088 Sum_probs=278.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
..+++|+|+.|.| ++. ..|.+.++++...+.. ....+|+++.|.++||+++++++....+.++++++|+ +|+
T Consensus 27 ~~~~~i~l~~G~P-~~~--~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~--it~ 101 (403)
T d1wsta1 27 ETSDVISLAGGLP-APE--TFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIM--TVA 101 (403)
T ss_dssp TSSSCEECCCCCC-CGG--GSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEE--EES
T ss_pred CCCCcEECCCCCC-Ccc--ccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHee--ecc
Confidence 4578999999997 332 4456677666665541 1246799999999999999999854333445688999 999
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHH-HHhhcCCCCcEEEEeCC
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALM-DDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~-~~i~~~~~~~~~v~~~~ 203 (435)
|+++++.++ +.+++++||+|++++|+|..+...+...|++++.++..+...+........ ....+..+.+.++++++
T Consensus 102 G~~~al~~~--~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (403)
T d1wsta1 102 GSQQALDLI--GRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVST 179 (403)
T ss_dssp SHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCS
T ss_pred cchHHHHHH--HHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhhhhccccccccccccc
Confidence 999999998 777889999999999999999999999999999998843221112222222 22333345678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++.. .+..+++++++|+||.++ +|+|+||++
T Consensus 180 p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~--~~~~~~~-~~~~~~~i~~~S~SK~~~-~G~RiG~~i 255 (403)
T d1wsta1 180 FQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE--PTPPIKH-FDDYGRVIYLGTFSKILA-PGFRIGWVA 255 (403)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGG-GCSSSCEEEEEESTTTTC-GGGCCEEEE
T ss_pred cCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC--CCCcccc-cCCCCcEEEEccccceec-Ccccccccc
Confidence 999999999999999999999999999999999999998752 2223322 245679999999999996 999999997
Q ss_pred EEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Q 013839 284 ILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE 363 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 363 (435)
+ +++ +++.+.........+.+...|.+.+.++.... .++++++.++.+.++++.+.+.|.+... ..+.
T Consensus 256 ~---~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~ 323 (403)
T d1wsta1 256 A---HPH----LIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY----LDEHIPKIIEFYKPRRDAMLEALEEYMP-EGVE 323 (403)
T ss_dssp E---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTCE
T ss_pred c---chH----HHHHHHHHHhhhccccccchhhhHHhhhhccc----cchhHHHHHHHHHHHHHHHHHHHHhhcc-CCeE
Confidence 5 888 88888887777778889999988888776654 4466788889999999999999987632 2466
Q ss_pred ccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC------------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 364 HITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG------------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 364 ~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg------------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+..|++|+|+|+.+ +.+.+.+++.++||.+.||. ||+++..+++++++++++|++++++..
T Consensus 324 ~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 324 WTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp ECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999955 44555445567899999861 999986688899999999999998643
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.5e-45 Score=361.25 Aligned_cols=316 Identities=16% Similarity=0.222 Sum_probs=255.3
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCC--ccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-
Q 013839 86 LESISASVSTKMVEESVKLVYGKDS--DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD- 162 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~- 162 (435)
.+|+++.|.++||++||+++....+ ..+++++|+ +|+|+++++.++ +.+++.|||+|++++|+|+.+...+..
T Consensus 77 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Iv--it~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~ 152 (428)
T d1iaya_ 77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV--MAGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWR 152 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE--EEEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTT
T ss_pred ccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEE--EcCCHHHHHHHH--HHHhCCCCCEEEEccCCchHHHHHHHHh
Confidence 4699999999999999999843332 234578998 999999999998 778899999999999999999887764
Q ss_pred CCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC
Q 013839 163 AQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG 239 (435)
Q Consensus 163 ~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~ 239 (435)
.|++++++++...+++.+|++.++.++.. ..++++++++++||||||.+++.+++++|+++|++|+++||+||+|.+
T Consensus 153 ~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~ 232 (428)
T d1iaya_ 153 TGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA 232 (428)
T ss_dssp TCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG
T ss_pred cCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccc
Confidence 58899999885556789999988766432 346789999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHhhh-------cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCCh
Q 013839 240 FASGDLDKDAQAIRIFLE-------DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPV 312 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (435)
+.+++. ...++..+.+ ..+++++++|+||.|+++|+|+||++ +.++. +.+.++.... ....+.
T Consensus 233 ~~~~~~--~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~--~~~~~----l~~~~~~~~~--~~~~~~ 302 (428)
T d1iaya_ 233 TVFDTP--QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIY--SFNDD----VVNCARKMSS--FGLVST 302 (428)
T ss_dssp GCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEE--ESCHH----HHHHHHHHHT--TSCCCH
T ss_pred cccCcc--cccccccccchhhccccccceEEEEecCCCcccCCCccccccc--ccccc----hhhhhhhhhc--cccccc
Confidence 998753 2223333221 35689999999999999999999996 44566 6666655432 345777
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC-----------HHH
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT-----------PYQ 381 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~ 381 (435)
..|.++++.+..... .++++++.+++++++++.+.+.|+..| +.+..+++|+|+|+++. .++
T Consensus 303 ~~~~~~~a~l~~~~~---~~~~~~~~~~~l~~r~~~~~~~L~~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l 375 (428)
T d1iaya_ 303 QTQYFLAAMLSDEKF---VDNFLRESAMRLGKRHKHFTNGLEVVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSL 375 (428)
T ss_dssp HHHHHHHHHTTCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHH
T ss_pred ccccchhhhhhhhcc---ccccccccccccchhHHHHHHHHHhCC----CEEecCCcceEEEEECccccccCCCCCHHHH
Confidence 788887777776542 345678888999999999999999887 56788999999998652 235
Q ss_pred HHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 382 VDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 382 ~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++.+++++||.+.|| | ||+|+..++++++++++||++++..
T Consensus 376 ~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 376 WRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 678888899999987 1 9999765667899999999999865
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7e-46 Score=356.79 Aligned_cols=343 Identities=16% Similarity=0.128 Sum_probs=279.6
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
.++..+.++.+ ..+.|||++|.| +. ++|+..++++.+.+ .. ..+|+++.|.++||++||+++ +.+ +
T Consensus 13 ~~~~~~~~la~--~~~~I~ls~g~p-~~---~~p~~i~~al~~~l-~~-~~~Y~~~~G~~elr~aiA~~~-~~~-----~ 78 (368)
T d1v2da_ 13 SIFPRMSGLAQ--RLGAVNLGQGFP-SN---PPPPFLLEAVRRAL-GR-QDQYAPPAGLPALREALAEEF-AVE-----P 78 (368)
T ss_dssp -CHHHHHHHHH--HHTCEECCCCSC-SS---CCCHHHHHHHHHHT-TT-SCSCCCTTCCHHHHHHHHHHH-TSC-----G
T ss_pred CHHHHHHHHhc--cCCCEEecCCCC-CC---CCCHHHHHHHHHHh-hc-ccCCCCCcCCHHHHHHHHhhc-ccC-----C
Confidence 45665555542 346899999997 43 44444544444444 33 467999999999999999998 332 6
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~~ 194 (435)
++|+ +|+|+++++.++ +..++.+||.|++++|+|..+...++..|.+++.+++. +.+++.+|++.+++.+. +
T Consensus 79 ~~Ii--it~G~~~al~~~--~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~---~ 151 (368)
T d1v2da_ 79 ESVV--VTSGATEALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT---P 151 (368)
T ss_dssp GGEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC---T
T ss_pred ccee--eccchHHHHHHH--hhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhc---c
Confidence 7888 999999999998 77788999999999999999999999999998888763 23457899999999987 6
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~ 274 (435)
.++++++++||||||.+++.+++++|+++|++|++++|+||+|..+.+.... .... ....++.+++.|+||.+++
T Consensus 152 ~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~sk~~~~ 226 (368)
T d1v2da_ 152 RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP--RRLR---EFAPERTFTVGSAGKRLEA 226 (368)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC--CCHH---HHCTTTEEEEEEHHHHTTC
T ss_pred CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccc--cccc---cccccccceeecccccccc
Confidence 7899999999999999999999999999999999999999999877765421 1111 2335678889999999999
Q ss_pred cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 275 YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 275 ~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
+|+|+||++. +++ +++.+.+.......+++.+.|.++..++.... +.++++..++.++++++.+.+.|+
T Consensus 227 ~G~R~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~l~ 295 (368)
T d1v2da_ 227 TGYRVGWIVG---PKE----FMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLR 295 (368)
T ss_dssp GGGCCEEEEC---CTT----THHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc---ccc----ccchhhhhhhcccccccccccccccccccccc----chhhHHHHHHHHHHhhhhhhhhHH
Confidence 9999999963 777 88888887777778899999999888886543 335788889999999999999999
Q ss_pred hhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 355 KLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
++| +.+..+++|+|+|++++.....++++++||.++|| + |||++. ++|++++++++|++++
T Consensus 296 ~~g----~~~~~p~g~~~~~~~l~~~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 296 AMG----LRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368 (368)
T ss_dssp HTT----CCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred hcC----cEEecCCceeEEEEeCCccHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence 987 56888999999999886545566788899999986 1 999976 8899999999999874
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=1.1e-45 Score=362.55 Aligned_cols=345 Identities=16% Similarity=0.195 Sum_probs=268.5
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhc-------C-----CCCCCCCCCcccHHHHHHHHHhHcCCCC--ccccCC
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIA-------G-----SEFLESISASVSTKMVEESVKLVYGKDS--DVVKEG 116 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~ 116 (435)
.+|+|++++ | ....+.+++.+..-. . ....+|+++.|.++||+++|+++....+ .+++++
T Consensus 37 G~i~l~~~e----n--~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe 110 (431)
T d1m7ya_ 37 GIIQMGLAE----N--QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN 110 (431)
T ss_dssp SBEECSSCC----C--CSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred cEEEeeccc----c--cccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 489999998 3 223333443332210 0 0123699999999999999999843322 245688
Q ss_pred CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCCeeeeeecCCCCCCcChHhHHHHhhc---C
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIPERTYHYYDPDSKSLDFAALMDDIKN---A 192 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~ 192 (435)
+|+ +|+|+++++.++ +.++++|||+|++++|+|+.+...+.. .|++++++++..++++.+|++.+++.+.+ .
T Consensus 111 ~I~--it~G~~~al~~~--~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~ 186 (431)
T d1m7ya_ 111 HLV--LTAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR 186 (431)
T ss_dssp GEE--EEEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT
T ss_pred eEE--ECCCHHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhc
Confidence 999 999999999999 777889999999999999999888874 57889999886556688999999887754 2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh---------hcCCeEE
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL---------EDEHLIG 263 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~---------~~~~~~i 263 (435)
..++++++++|||||||.+++.+++++|+++|++|+++||+||+|..+.|++. ...++..+. +..++++
T Consensus 187 ~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 187 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC--CCCCHHHHhhhcccccccccCceEE
Confidence 35789999999999999999999999999999999999999999999998752 233333321 1235899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++|+||.||++|+|+||++. +++ ++....... ......+...|.++++.+.+... ..++.++.+++++
T Consensus 265 ~~~s~SK~~~~~G~RiG~~~~---~~~----~i~~~~~~~-~~~~~~~~~~~~~~~a~l~~~~~---~~~~~~~~~~~~~ 333 (431)
T d1m7ya_ 265 VVYSLSKDLGLPGFRVGAIYS---NDD----MVVAAATKM-SSFGLVSSQTQHLLSAMLSDKKL---TKNYIAENHKRLK 333 (431)
T ss_dssp EEEESSSSSCCGGGCEEEEEE---SCH----HHHHHHHHH-GGGSCCCHHHHHHHHHHHHCHHH---HHHHHHHHHHHHH
T ss_pred EEecCcccccCCCCccceecc---chh----hhHHHHHHH-hccccccccccchhhhhhccchh---hhhhhhhhhhhhh
Confidence 999999999999999999964 555 444343323 33456777777777777765432 3457788899999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCCC-----------HHHHHHHhhhccEEEeCC--------C--cEEec
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT-----------PYQVDRLAKEFHIYMTQD--------G--RISMA 402 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gI~i~pg--------g--Ris~~ 402 (435)
++++.+.+.|++.| +.+.++++|+|+|+++. .++++++++++||.+.|| | ||+|+
T Consensus 334 ~~~~~l~~~L~~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a 409 (431)
T d1m7ya_ 334 QRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA 409 (431)
T ss_dssp HHHHHHHHHHHTTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS
T ss_pred hhhhhhhhhhhcCC----cEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC
Confidence 99999999999887 56888999999999651 245688888899999997 2 99997
Q ss_pred cCCCCcHHHHHHHHHHHHHh
Q 013839 403 GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 403 ~~~~e~i~~~~~~l~~~l~~ 422 (435)
..+++++++++++|++++++
T Consensus 410 ~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 410 NLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp SSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 65677899999999999875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-45 Score=353.32 Aligned_cols=343 Identities=10% Similarity=0.022 Sum_probs=262.7
Q ss_pred eeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHH
Q 013839 52 KINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACR 131 (435)
Q Consensus 52 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~ 131 (435)
+|+|++|+| |+ ++|+...+++.+.+..+ ..+|++..| +++|+++++++....+.++++++|+ +|+|+++++.
T Consensus 1 ~~~~~~~~~-df---~~p~~i~eal~~~~~~~-~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~--it~G~~~~l~ 72 (361)
T d1d2fa_ 1 LLPFTISDM-DF---ATAPCIIEALNQRLMHG-VFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVV--YGPSVIYMVS 72 (361)
T ss_dssp CEECCSSSC-SS---CCCHHHHHHHHHHHTTC-CCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEE--EESCHHHHHH
T ss_pred CcCcCCCCC-CC---CCCHHHHHHHHHHHhCC-CCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEE--EeCCHHHHHH
Confidence 589999997 65 55555555555555554 567999888 7899999999855555556688998 9999999998
Q ss_pred HHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC-CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCC
Q 013839 132 LFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD-PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGV 210 (435)
Q Consensus 132 ~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~ 210 (435)
.+ +.++++|||+|++++|+|.+|...++..|.+++.++... .+++.+|++.+++.+.+ ++++++++++||||||.
T Consensus 73 ~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~p~NPTG~ 148 (361)
T d1d2fa_ 73 EL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGK 148 (361)
T ss_dssp HH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCC
T ss_pred HH--hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc--CCceeEEeccccccccc
Confidence 88 777889999999999999999999999999998887643 34467999999999863 57899999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChh
Q 013839 211 DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSK 290 (435)
Q Consensus 211 ~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~ 290 (435)
+++.+++++|+++|+++++++|+||+|.++.+++.. ..++. ....++++++.|+||.++++|+|+||+++ . +..
T Consensus 149 ~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~--~~~~~--~~~~~~~v~~~s~SK~~~~~g~R~g~~~~-~-~~~ 222 (361)
T d1d2fa_ 149 VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP--HIPWS--NVARGDWALLTSGSKSFNIPALTGAYGII-E-NSS 222 (361)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC--CCCGG--GTCCSSEEEEECSHHHHTCGGGCCEEEEE-C-SHH
T ss_pred ccchhhhhhhhhhhhhhheeeeeccccccccccccc--ccccc--cccccccccccccccccccccccceeeec-c-hhH
Confidence 999999999999999999999999999999886522 22222 22356899999999999999999999974 3 444
Q ss_pred HHHHHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 291 QAAAIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 291 ~~~~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
..+.. +...... ...+++...+.++...+... .++.++.++.++++++.+.+.+..... .+.+..|++
T Consensus 223 ~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~p~g 291 (361)
T d1d2fa_ 223 SRDAY---LSALKGRDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMNAAFP--ELNWQIPQS 291 (361)
T ss_dssp HHHHH---HHHHHTTSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHCS--SCCCCCCSB
T ss_pred HHHHH---hhhcccccccccchhhhHHHHHHHhhcc------chhhhcccccchhhHHHHHHHhhhhcc--cccccccCc
Confidence 22222 2222222 22334444444333333322 256677888888888888888876642 356778999
Q ss_pred ceeEecCC-----CH-HHHHHHhhhccEEEeCC---C-------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 370 GMFCFSGL-----TP-YQVDRLAKEFHIYMTQD---G-------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 370 g~~~~~~~-----~~-~~~~~ll~~~gI~i~pg---g-------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
|+|+|+.+ +. +++.++++++||.+.|| | |+|++. +++++++++++|++++++++
T Consensus 292 g~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 292 TYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred eeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999854 44 45678888889999987 1 999975 88999999999999998753
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=6.4e-40 Score=313.37 Aligned_cols=336 Identities=13% Similarity=0.086 Sum_probs=249.4
Q ss_pred CCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccc
Q 013839 34 KDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVV 113 (435)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (435)
.+.+.+..+++.. +..++|||+.|+. ..++|+.+.+.+..++ .. ...|++ .+.++||+++|+++ +..
T Consensus 7 gg~~~~~~~~~g~-~p~~~idls~~~n----p~~~p~~~~~a~~~~~-~~-~~~Yp~-~~~~~Lr~aia~~~-~v~---- 73 (355)
T d1lc5a_ 7 GGNIREPATVLGI-SPDQLLDFSANIN----PLGMPVSVKRALIDNL-DC-IERYPD-ADYFHLHQALARHH-QVP---- 73 (355)
T ss_dssp SCCCHHHHHHHTS-CGGGSEECSSCCC----TTCCCHHHHHHHHHTG-GG-GGSCCC-TTCHHHHHHHHHHH-TSC----
T ss_pred CCHHHHHHHHhCC-ChhheEEccCCCC----CCCCCHHHHHHHHHHH-HH-hccCCC-CChHHHHHHHHHHh-CCC----
Confidence 3446677777753 3447999999972 2234444444444433 23 455844 56799999999998 432
Q ss_pred cCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 114 KEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 114 ~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
+++|+ ++.|+++++.++ +. .+ .|+.++++.|+|..|.......+++++.+++..++++.++ +.+++.+.
T Consensus 74 -~~~I~--~~~g~~~~~~~~--~~-~~-~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~--- 142 (355)
T d1lc5a_ 74 -ASWIL--AGNGETESIFTV--AS-GL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALT--- 142 (355)
T ss_dssp -GGGEE--EESSHHHHHHHH--HH-HH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC---
T ss_pred -HHHEE--ecccHHHHHHHH--Hh-hh-ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccc---
Confidence 67888 888888887665 33 23 4566777889999998888889999999998545555555 55666665
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
+++++++++|||||||.+++.+++++|+++|++|++++|+||+|.++.+.+. . ........+++++++|+||.+|
T Consensus 143 ~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~--~---~~~~~~~~~~~i~~~S~SK~~~ 217 (355)
T d1lc5a_ 143 PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--G---FIPALKDNPHIWVLRSLTKFYA 217 (355)
T ss_dssp TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--C---SGGGCTTCTTEEEEEESTTTTT
T ss_pred cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecc--c---ccccccccccceeecccccccc
Confidence 6789999999999999999999999999999999999999999999887642 1 1122344678999999999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
++|+|+||++ ++++. +...+++. . ...+.+.++|.++..++.+. ++..+.+++++++++.+.+.|
T Consensus 218 l~GlR~G~~i--~~~~~----~~~~~~~~-~-~~~~~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l 282 (355)
T d1lc5a_ 218 IPGLRLGYLV--NSDDA----AMARMRRQ-Q-MPWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQAL 282 (355)
T ss_dssp CTTTCCEEEE--CCCHH----HHHHHHHH-S-CTTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccee--ccchh----hhHHHHhh-c-CCcccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHH
Confidence 9999999996 42343 44444443 2 33578889999999999875 566777888999999999999
Q ss_pred HhhCCCCCccccccCcceeEecCCC---HHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 354 EKLGSSLNWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
.+++. +.+ .|.+|+|+|+++. .++++.+ .++||.++|+. |||++ +++++++++++|++++
T Consensus 283 ~~~~~---~~~-~p~~~~f~~~~~~~~~~~~~~~L-~~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 283 CQLPL---LTV-YPGRANYLLLRCEREDIDLQRRL-LTQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 355 (355)
T ss_dssp HTSTT---EEE-CCCSSSEEEEEESCTTCCHHHHH-HTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred hhcCC---cEE-CCCCCEEEEEECCCCHHHHHHHH-HHCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHhC
Confidence 98863 444 4567789998662 3345555 56899999862 99984 6788899999998864
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-39 Score=308.80 Aligned_cols=312 Identities=13% Similarity=0.143 Sum_probs=241.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++++|.|++|+. .++.|...++++.+++..+ ..+|.|..|.++||+++++++...+ +.+++|+ +|+|+
T Consensus 16 ~~~~d~~~l~~~en----p~~~p~~i~~~~~~~~~~~-~~~~yp~~g~~~Lr~aia~~~~~~~---v~~d~I~--it~G~ 85 (334)
T d2f8ja1 16 TEKRDKTYLALNEN----PFPFPEDLVDEVFRRLNSD-ALRIYYDSPDEELIEKILSYLDTDF---LSKNNVS--VGNGA 85 (334)
T ss_dssp CCCCCSEECSSCCC----SSCCCHHHHHHHHHHCCTT-GGGSCCCSSCHHHHHHHHHHHTCSS---CCGGGEE--EEEHH
T ss_pred ccCCCceEEECCCC----CCCCCHHHHHHHHHHhhcc-hhcCCCCCCcHHHHHHHHHHhcccC---CCcceEE--ecCcc
Confidence 46789999999983 2356667777777777655 3445577899999999999985443 4478998 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++++.++ + .+||+|++++|+|..|...++..|++++.+|+. ++. ..+ +.. .+++++++++||||
T Consensus 86 ~~~l~~l--~----~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~-~~~-~~~-----~~~---~~~~~~l~l~nP~N 149 (334)
T d2f8ja1 86 DEIIYVM--M----LMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-KDL-RIP-----EVN---VGEGDVVFIPNPNN 149 (334)
T ss_dssp HHHHHHH--H----HHSSEEEECSSCCHHHHHHHHHHTCCEEECCCC-TTS-CCC-----CCC---CCTTEEEEEESSCT
T ss_pred hhHHHHH--h----hhccccccccccccccccchhccCCcccccccc-ccc-ccc-----ccc---cccceEEEeccccc
Confidence 9887665 3 357999999999999999999999999999983 332 221 111 25789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++ +.++++++|+||+|.++.+... . ......+++++++|+||.++++|+|+||+++
T Consensus 150 PtG~~~s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~~---~----~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~-- 216 (334)
T d2f8ja1 150 PTGHVFEREEIER----ILKTGAFVALDEAYYEFHGESY---V----DFLKKYENLAVIRTFSKAFSLAAQRVGYVVA-- 216 (334)
T ss_dssp TTCCCCCHHHHHH----HHTTTCEEEEECTTGGGTCCCC---G----GGGGTCSSEEEEEESTTTSSCTTTCEEEEEE--
T ss_pred ccceeecHHHhhc----cccceeEEeecccchhhccccc---c----cccccCceEEEEecCccccchhhhhhhhccc--
Confidence 9999999886655 3567999999999987765431 1 1224467899999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ ++.++.+... ..+.+.++|.++..++.+. ++.+..+++++++++.+.+.|+++| +++.+
T Consensus 217 -~~~----~i~~l~~~~~--~~~~s~~~~~~a~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~ 278 (334)
T d2f8ja1 217 -SEK----FIDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMG----YRITD 278 (334)
T ss_dssp -CHH----HHHHHHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHT----CEECC
T ss_pred -chH----HHHHHHHhhc--ccccchhhhhhcccccccc-------cchhhHHHHHHHHHHHHHHHHHHCC----CeECC
Confidence 888 8888887653 4567888999888888764 6677888999999999999999997 46777
Q ss_pred cCcceeEecCC---CHHHHHHHhhhccEEEeCCC---cEEeccCCCCcHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG---RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 367 ~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg---Ris~~~~~~e~i~~~~~~l~~ 418 (435)
++|+ |+|+.+ +.+.+.+.|.++||.++++. |||++ +.+++++++++|++
T Consensus 279 ~~g~-f~~~~~~~~~~~~~~~~L~~~GI~vr~~~~~vRis~g--~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 279 SRGN-FVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIG--KREENDMILRELEV 333 (334)
T ss_dssp CCSS-EEEEECCHHHHHHHHHHHHHTTEECEEETTEEEEECC--CHHHHHHHHHHHHH
T ss_pred CCce-EEEEECCCCCHHHHHHHHHHCCCEECCCCCeEEEEcC--CHHHHHHHHHHHhc
Confidence 7766 677765 33445444467899998652 99985 56778888888765
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-38 Score=298.78 Aligned_cols=314 Identities=16% Similarity=0.180 Sum_probs=239.0
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
....|.|+.|+. +. ..+.. +.......||++ +..+||+++|+++ +. ++++|+ +|+|+++
T Consensus 26 ~~~~i~L~~ne~--p~--~~~~~--------~~~~~l~rYPd~-~~~~Lr~~ia~~~-gv-----~pe~I~--it~Gs~e 84 (354)
T d1fg7a_ 26 GNGDVWLNANEY--PT--AVEFQ--------LTQQTLNRYPEC-QPKAVIENYAQYA-GV-----KPEQVL--VSRGADE 84 (354)
T ss_dssp TTCSEECSSCCC--SS--CCCCC--------CCCCCTTSCCCS-SCHHHHHHHHHHH-TS-----CGGGEE--EESHHHH
T ss_pred CCCCEEeeCCCC--CC--CCCHH--------HHHHHHhcCCCC-cHHHHHHHHHHHh-CC-----ChHHee--eccCchH
Confidence 356789998872 11 22221 112224558654 5689999999998 43 378999 9999999
Q ss_pred HHHHHHHHHHHhCCCC-EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPES-HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
++.++ +.+++.||| .|+++.|+|..|...++..|++++.++. .++|++|+++++.++ .+++++++++||||
T Consensus 85 ai~~~--~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~----~~~~~v~~~~pnNP 156 (354)
T d1fg7a_ 85 GIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKL----DGVKVVYVCSPNNP 156 (354)
T ss_dssp HHHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSC----TTEEEEEEESSCTT
T ss_pred HHHHH--HHHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhcc----cccceeeccCCCcc
Confidence 99999 788889998 5889999999999999999999998887 457899999998765 46899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.++++.+.+.+++ +.++|+||+|.+|.++. .........+++++++||||.||++|+|+||+++
T Consensus 157 tG~~~~~~~~~~~~~~~~~-~~~~iidd~~~~f~~~~------~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~--- 226 (354)
T d1fg7a_ 157 TGQLINPQDFRTLLELTRG-KAIVVADEAYIEFCPQA------SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA--- 226 (354)
T ss_dssp TCCCCCHHHHHHHHHHHTT-TCEEEEECTTGGGSGGG------CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE---
T ss_pred ceeEeeecccccccccccc-cccccccccchhhcccc------ccchhhcccccceEEeCCccccCCCccccccccc---
Confidence 9999999999988887764 66788888888877542 1112234567899999999999999999999975
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+... ..+.+.+.|.++..++.+.. ........+++.+.++.+.+.+.+++. +....+
T Consensus 227 ~~~----~i~~l~~~~~--~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~r~~l~~~l~~~~~---~~~~~p 292 (354)
T d1fg7a_ 227 NEE----VINLLMKVIA--PYPLSTPVADIAAQALSPQG-----IVAMRERVAQIIAEREYLIAALKEIPC---VEQVFD 292 (354)
T ss_dssp CHH----HHHHHHHHSC--SSCSCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTT---EEEECC
T ss_pred cch----hhhhhhhhcC--ccchhhHHHHHHHHHHhhhc-----cccccccchhhhhHHHHHHHHHHhCCC---cceeCC
Confidence 888 8888877543 34566777777777766543 144556667788888999999998874 445567
Q ss_pred CcceeEecCC-CHHHHHHHhhhccEEEeCCC---------cEEeccCCCCcHHHHHHHHH
Q 013839 368 QLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG---------RISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 368 ~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---------Ris~~~~~~e~i~~~~~~l~ 417 (435)
.+++|+|+.+ +.+.+.+.|.++||.+++++ |||++ +++++++++++|+
T Consensus 293 ~~~~f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig--t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 293 SETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALR 350 (354)
T ss_dssp CSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC--CHHHHHHHHHHHh
Confidence 7889999977 44444344456899998762 99984 5677888888775
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=5e-35 Score=282.54 Aligned_cols=326 Identities=11% Similarity=0.072 Sum_probs=233.3
Q ss_pred CCCeeeeecceecCCCCCcccchHHH--HHHHHhc-CC-CCCCCCCCcc----cHHHHHHHHHhHcCCCCccccCCCeee
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVR--EAEAKIA-GS-EFLESISASV----STKMVEESVKLVYGKDSDVVKEGRSAG 120 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~--~~~~~~~-~~-~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~v~~ 120 (435)
..-++|++.|+| ....+.++ ....++. .+ ...+|....+ .++|+++|++.+...++...+..+|+
T Consensus 55 ~~~~~~~~~gdp------~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Iv- 127 (425)
T d2hoxa1 55 QGCSADVASGDG------LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIV- 127 (425)
T ss_dssp TTCCEECCSCCC------GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEE-
T ss_pred CCceeeCCCCCC------CCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEE-
Confidence 357899999997 23333222 2223322 22 1223443322 38999999998732222212234577
Q ss_pred EecCCchhHHHHHHHHHHH--------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 121 VQALSGTGACRLFAEFQRR--------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+++|++++++++ +.++ +.|||+|+++.|+|+.|....+..+.+...+ .+|.+.++++++
T Consensus 128 -vG~Gsteli~~~--~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~--------~~D~~~~~~~~~-- 194 (425)
T d2hoxa1 128 -FGVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSN-- 194 (425)
T ss_dssp -EESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSC--
T ss_pred -ECCCHHHHHHHH--HHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCcc--------CCCHHHHHhhCC--
Confidence 899999999988 6666 5799999999999999999999888765544 356777776666
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
+++++++++|||||||.+.. +..+++.+|+||+|.+..+.+ +....+++|+++|+||.|
T Consensus 195 -~~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~----------~~~~~~~~Ivl~S~SK~f 253 (425)
T d2hoxa1 195 -PEQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP----------IKYKADEDILLFTMSKFT 253 (425)
T ss_dssp -GGGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC----------CCSCBCCSEEEEEHHHHT
T ss_pred -CCceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccc----------hhhhcCCeEEEEeCHHhc
Confidence 68899999999999998742 334689999999997655432 234457899999999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH-----HHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK-----SLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~-----~~~~~~~~~~~~~~~~~~~ 347 (435)
|++|||+||++ ++++. +++++.++......+++.++|.++..+|+..... ....+..+..++.++++++
T Consensus 254 glaGlRiGw~i--~~~~~----i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 327 (425)
T d2hoxa1 254 GHSGSRFGWAL--IKDES----VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV 327 (425)
T ss_dssp SCGGGCCEEEE--ECCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred cCcchheeeEE--eCCHH----HHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 44777 8888888888778899999999998888643100 0012345667888888999
Q ss_pred HHHHHHHhhCCC------C-----CccccccCcceeEecCC---CHHHHHHHhhhccEEEeCC---C------cEEeccC
Q 013839 348 TLRQNLEKLGSS------L-----NWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQD---G------RISMAGV 404 (435)
Q Consensus 348 ~l~~~l~~~~~~------~-----~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg---g------Ris~~~~ 404 (435)
.+.+.|++.+.. . .+....+..+.|.|+.. +.+++.++|+++||.++|| | |||+..
T Consensus 328 ~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~- 406 (425)
T d2hoxa1 328 NITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK- 406 (425)
T ss_dssp HHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-
T ss_pred HHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecC-
Confidence 999999876521 0 01112234455777754 2345677888999999997 2 999977
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 013839 405 TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~ 422 (435)
++|++++++++|++++++
T Consensus 407 ~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 407 TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 888999999999999863
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=3.1e-26 Score=218.32 Aligned_cols=293 Identities=15% Similarity=0.072 Sum_probs=193.0
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEE-Ec-CCCChhhHHHHhhCCC
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIY-FP-DPTWSNHHNIWRDAQI 165 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vl-v~-~p~y~~~~~~~~~~g~ 165 (435)
+.+..+.+++++..++.+.+.. .++++ +++||++|+..+ +.++ .+||.|+ ++ .|+|..+...++..|+
T Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~-----~e~~~--~~~~~~~a~~~~--l~al-~~~~~vi~~~~~~~~~~~~~~~~l~g~ 115 (366)
T d2aeua1 46 IGSSYFAEKVNEYGLKHLGGDE-----NDKCV--GFNRTSSAILAT--ILAL-KPKKVIHYLPELPGHPSIERSCKIVNA 115 (366)
T ss_dssp THHHHHHHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHH--HHHH-CCSEEEEECSSSSCCTHHHHHHHHTTC
T ss_pred cCchhhHHHHHHHHHHHccCCC-----ccEEE--EeCCHHHHHHHH--HHHh-CCCCEEEEecCCCcchhHHHHHHhcCC
Confidence 3344677889999988885543 24566 899999998877 6664 5666654 44 5899999999999998
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++ +. + |+++++++++ ++++++++++|+||+ +++.+++++|+++|++||+++|+||+|....++..
T Consensus 116 ~~v--~~---~----d~e~l~~~i~---~~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~ 181 (366)
T d2aeua1 116 KYF--ES---D----KVGEILNKID---KDTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLF 181 (366)
T ss_dssp EEE--EE---S----CHHHHHTTCC---TTEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT
T ss_pred eEE--CC---C----CHHHHHHhcC---CCceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccc
Confidence 754 32 1 7899999888 789999999999986 36788999999999999999999999976544311
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
. ..... . ...++++.|+||.+ +|+|+||+++ +++ +++.++..++....+++++.|.++...|+..
T Consensus 182 ~-~~~~~-~----~~~di~~~S~sK~~--~g~~~G~i~~---~~~----~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl 246 (366)
T d2aeua1 182 N-QPPAL-K----LGADLVVTSTDKLM--EGPRGGLLAG---KKE----LVDKIYIEGTKFGLEAQPPLLAGIYRALKNF 246 (366)
T ss_dssp T-CCCHH-H----HTCSEEEEETTSSS--SSCSCEEEEE---EHH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHC
T ss_pred c-CCCHh-h----cCceEEEecccccc--cccceeEEEe---cHH----HHHHHHHHHhcccccCCHHHHHHHHHHHHhc
Confidence 0 01111 1 12358889999976 5899999975 888 8888888887777788888888888777532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----------CHHHHHHHhhhccEEEeC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----------TPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~ll~~~gI~i~p 395 (435)
...+ ++++.+..++......+.+......... .......+.+.+|+|.+. +.+++.+|++++||.+.|
T Consensus 247 ~~~r-~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip 324 (366)
T d2aeua1 247 NLER-IRKAFERAKNFDLSKIEKLNKELKAIDD-NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITIT 324 (366)
T ss_dssp CHHH-HHHHHHHHHHCCCHHHHHHHHHHTTTCT-TEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECST
T ss_pred cHHH-HHHHHHHHHHHHHHHHhhhhcccccccc-ccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEE
Confidence 2110 1111111111111111222222221111 011223344555666532 235678889999999988
Q ss_pred C-----C----cEEeccCCCCc--HHHHHHHHHHHHH
Q 013839 396 D-----G----RISMAGVTTGN--VNYLANAIHEVTR 421 (435)
Q Consensus 396 g-----g----Ris~~~~~~e~--i~~~~~~l~~~l~ 421 (435)
+ + |||++..+.++ .++++++|.+.++
T Consensus 325 ~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 325 VAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp TSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence 6 2 99986533333 4666666655554
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.7e-24 Score=206.23 Aligned_cols=287 Identities=13% Similarity=0.081 Sum_probs=188.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY 173 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 173 (435)
...+++.+|+++ +. +++. +|+||++|+.++ +.++++|||+|+++.++|......++..|++++.+|..
T Consensus 49 ~~~~~~~~A~~~-g~-------e~~~--~t~g~t~a~~~~--~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~ 116 (364)
T d2e7ja1 49 HDFIHNQLPKFL-GC-------DVAR--VTNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT 116 (364)
T ss_dssp HHHHHTHHHHHT-TS-------SEEE--EESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHh-Cc-------CEEE--EECcHHHHHHHH--HHHHhCCCcEEEeecccccccchHHHhccceEEEeeec
Confidence 355788899887 33 2555 899999999888 78889999999999999988888889999999999986
Q ss_pred CCCCCCcChHhHHHHhhcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 174 DPDSKSLDFAALMDDIKNA--PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
+..++.+|++++++++++. ..+++++++++|+||||.+.+ +++|+++|++||+++++|++|.....+ .+
T Consensus 117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~---~~--- 187 (364)
T d2e7ja1 117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---VS--- 187 (364)
T ss_dssp CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---CC---
T ss_pred cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh---hc---
Confidence 5667899999999999653 234678889999999999876 568999999999999999998543322 11
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc--------cccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA--------MYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~q~~~~~~l~ 323 (435)
.... ..+++++|++|.++.+| ++||+++ +++ +++.+.+.... ...........++.+.+.
T Consensus 188 ~~~~----g~D~~~~S~~K~~~~~g-~~g~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (364)
T d2e7ja1 188 LKEI----GADFIVGSGHKSMAASG-PIGVMGM---KEE----WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP 255 (364)
T ss_dssp HHHH----TCSEEEEEHHHHSSCCS-SCEEEEE---CTT----TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH
T ss_pred cccc----ccceeeeccccccCCCC-CEEEEEE---CHH----HHHHHHhhccccCcccccccccccchhHHHHHHHHHH
Confidence 1111 23578899999999676 7899964 666 44433221111 011112222223323332
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------------CHHHHHHHhhhccE
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------------TPYQVDRLAKEFHI 391 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~ll~~~gI 391 (435)
. ..+..+...+.+ ++++.+.+.|+.+|... + ...+......+... ........+.+.++
T Consensus 256 ~------~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (364)
T d2e7ja1 256 H------VRERIKRWDEEV-EKARRFAAEMEKLGIKQ-L-GDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKI 326 (364)
T ss_dssp H------HHHHGGGHHHHH-HHHHHHHHHHHHTTCEE-E-SSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTE
T ss_pred H------HHHHHHHHHHHH-HHHHHHHHHHHHcCCee-c-CCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCC
Confidence 1 112333333333 45566778888877421 0 01111111222211 11233444455677
Q ss_pred EEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 392 YMTQDG-----RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 392 ~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
.....| |++....+++++++++++|++++++
T Consensus 327 ~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 327 HGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp ECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 654333 5554344889999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=5.6e-22 Score=190.60 Aligned_cols=321 Identities=15% Similarity=0.097 Sum_probs=203.7
Q ss_pred cCCCCCcccchHHHHHHHHhcCCCCCCCCCCc------------ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 61 RDDKGRPVVLQCVREAEAKIAGSEFLESISAS------------VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~------------g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+|.++..++++.+.+++...... ...|+++. -+.++|+.+|+++ +.+ +++|. ++.|+++
T Consensus 6 lD~aa~~p~~~~v~ea~~~~~~~-~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l-g~~-----~~~I~--~~~~~t~ 76 (391)
T d1p3wa_ 6 LDYSATTPVDPRVAEKMMQFMTM-DGTFGNPASRSHRFGWQAEEAVDIARNQIADLV-GAD-----PREIV--FTSGATE 76 (391)
T ss_dssp CBTTTCCCCCHHHHHHHHTTTST-TSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH-TCC-----GGGEE--EESSHHH
T ss_pred eeCccccCCCHHHHHHHHHHHHh-ccccCCCchhhhHHHHHHHHHHHHHHHHHHHHc-CCC-----CCcEE--EECCHHH
Confidence 34444455666666666665432 12233321 1346788999998 433 56888 9999999
Q ss_pred HHHHHHHHH--HHhCCCCEEEEcCCCChhhHHHHh---hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 129 ACRLFAEFQ--RRFHPESHIYFPDPTWSNHHNIWR---DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 129 a~~~~~~~~--~~~~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
++..+.... ..+.+||+|++.++.|+.+...++ ..|+++..++. ++++.+|++.++++++ ++|+++++++
T Consensus 77 ~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~~~~~i~---~~T~lv~is~ 151 (391)
T d1p3wa_ 77 SDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP--QRNGIIDLKELEAAMR---DDTILVSIMH 151 (391)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECC--CTTSCCCHHHHHHHCC---TTEEEEECCS
T ss_pred HHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCC--CCCCeEcHHHHHHhCC---CCcEEEEEEC
Confidence 988874221 235799999999999988765544 56899999987 3456889999999998 8899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
++||||..++.+ +|+++|++||+++++|.++...... .+ + ...+..+++.|..|.+|.+|. |++.
T Consensus 152 ~~n~tG~~~~~~---~I~~~~~~~~~~~ivD~~~~~g~~~-~d-----~----~~~~~D~~~~s~~k~~g~~g~--g~~~ 216 (391)
T d1p3wa_ 152 VNNEIGVVQDIA---AIGEMCRARGIIYHVDATQSVGKLP-ID-----L----SQLKVDLMSFSGHKIYGPKGI--GALY 216 (391)
T ss_dssp BCTTTCCBCCHH---HHHHHHHHHTCEEEEECTTTBTTBC-CC-----T----TTSCCSEEEEESTTTTSCSSC--EEEE
T ss_pred CCCCCeeECCHH---HHHHHhccCCcEEEEeeccccCCcc-cc-----c----hhccccccccccccccCCCce--EEEE
Confidence 999999998855 8999999999999999986433321 11 1 112345778899999987774 6664
Q ss_pred EEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 284 ILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+ .++ ......... .......+.....++...+... .+......+++++.+..+.+.|..+
T Consensus 217 ~---~~~----~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~ 283 (391)
T d1p3wa_ 217 V---RRK----PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA------KEEMATEMERLRGLRNRLWNGIKDI 283 (391)
T ss_dssp E---CBT----TBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred E---ecc----hhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHH------HHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 3 444 222221110 1112223333333333333221 1334444566677777777777666
Q ss_pred CCCCCcccc----ccCcceeEecCCCHHHHHHHhhhccEEEeCC-------------------------C--cEEeccC-
Q 013839 357 GSSLNWEHI----TNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD-------------------------G--RISMAGV- 404 (435)
Q Consensus 357 ~~~~~~~~~----~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg-------------------------g--Ris~~~~- 404 (435)
+... +... .+....+.+.+...+.+...++ +|.++.| | |+|++..
T Consensus 284 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~n 360 (391)
T d1p3wa_ 284 EEVY-LNGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 360 (391)
T ss_dssp TTEE-ECSCTTTSCTTEEEEEETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTC
T ss_pred cCee-ecccccccCceEEEEEeCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCC
Confidence 4310 1111 1122233444666665544444 4444322 2 9998543
Q ss_pred CCCcHHHHHHHHHHHHHhhhhh
Q 013839 405 TTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
|.+|+++++++|+++++++++.
T Consensus 361 t~edid~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 361 TEEEIDYTIELVRKSIGRLRDL 382 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999987753
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.1e-21 Score=182.93 Aligned_cols=332 Identities=12% Similarity=0.100 Sum_probs=215.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC---CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL---ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++++.|||+.++|+.....|.+.+.+.++++....+... .+....-+.+|.+.+++++ +.. ... +++
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~-g~e-------~al--~~~ 112 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL-GME-------DAI--LYS 112 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TCS-------EEE--EES
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh-cCC-------ceE--Eec
Confidence 568899999988755433344444444444443322111 1112344567888888887 432 344 799
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHH---HhhcCCCCcEEEEe
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMD---DIKNAPDSSFFLLH 201 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~---~i~~~~~~~~~v~~ 201 (435)
+|..|...+ +.++..++|.|++..-.+..+...+...++++..++.+ |.+++++ ...+......++++
T Consensus 113 SG~~An~~~--i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~ 183 (401)
T d1fc4a_ 113 SCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIAT 183 (401)
T ss_dssp CHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred chhhhhHHH--HHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEE
Confidence 999998887 77788899999999999988888888888887776542 4445544 44444455677777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
....+..|...+ ++++.++|++||+++|+||++..+..+..... ....+...++.+++++|+||.+| |...|+
T Consensus 184 egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G--~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~ 256 (401)
T d1fc4a_ 184 DGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRG--SHEYCDVMGRVDIITGTLGKALG--GASGGY 256 (401)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCC--HHHHTTCTTCCSEEEEESSSTTC--SSSCEE
T ss_pred cCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCc--cchhccCCCCCeEEEeecccccc--cCCccc
Confidence 777666775554 77999999999999999999877776531111 22222223456789999999995 333477
Q ss_pred EEEEecChhHHHHHHHHHHHHhhc-ccc-CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIARA-MYG-SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+.+ +++ +++.++..... .+. ..++....++...+... ...++.++++.++.+++++.+...+.
T Consensus 257 v~g---~~~----~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~-------~~~~~~~~~l~~~~~~~~~~l~~~g~- 321 (401)
T d1fc4a_ 257 TAA---RKE----VVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQMSAAGF- 321 (401)
T ss_dssp EEE---CHH----HHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccC---CHH----HHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc-------ccCHHHHHHHHHHHHHHHhhhcccCC-
Confidence 753 888 77777655432 222 23333333333333211 23356788899999999999999874
Q ss_pred CCccccccCccee-EecCCC---HHHHHHHhhhccEEEeC-------CC----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 360 LNWEHITNQLGMF-CFSGLT---PYQVDRLAKEFHIYMTQ-------DG----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 360 ~~~~~~~~~~g~~-~~~~~~---~~~~~~ll~~~gI~i~p-------gg----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.....+..+. +.++-. .++.+.| .++||.+.+ -| ||++. ..|+|+|++++++|+++.+++
T Consensus 322 ---~~~~~~~pIv~v~~~~~~~a~~~~~~L-~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 322 ---TLAGADHAIIPVMLGDAVVAQKFAREL-QKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ---CBCCSSSSEEEEEEECHHHHHHHHHHH-HHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---ccCCCCCCEEEEEECCHHHHHHHHHHH-HHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 2333343322 233432 2344555 568999864 23 88874 358999999999999998876
Q ss_pred h
Q 013839 424 Q 424 (435)
Q Consensus 424 ~ 424 (435)
.
T Consensus 398 g 398 (401)
T d1fc4a_ 398 G 398 (401)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.87 E-value=2e-20 Score=177.57 Aligned_cols=328 Identities=15% Similarity=0.104 Sum_probs=215.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
.++++++|+.++|+.. ...+..++.+.+.+. .+ ...-++...-+.+|.+.+|+++ +.. . ++
T Consensus 43 ~~~~~~~FsSndYLGL---~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~-g~e-------~--al 109 (396)
T d2bwna1 43 GKQDITVWCGNDYLGM---GQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-QKE-------A--AL 109 (396)
T ss_dssp CEEEEEECSCSCTTSG---GGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-TCS-------E--EE
T ss_pred CCeEEEEEEcccccCc---CCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh-CCC-------c--ee
Confidence 3478999999998544 444444444444443 22 1122333344568888888887 332 2 33
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLL 200 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~ 200 (435)
++++|..|...+...++...+||.|+...-.+......++..+++++.++. + |++++++.+... +.+.++|+
T Consensus 110 l~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H---n----d~~~l~~l~~~~~~~~~~~iv 182 (396)
T d2bwna1 110 VFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH---N----DVAHLRELIAADDPAAPKLIA 182 (396)
T ss_dssp EESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT---T----CHHHHHHHHHHSCTTSCEEEE
T ss_pred eeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeec---c----hHHHhhhHHhhhcccCceeEE
Confidence 788999888777433334678899988888888888888899999888754 2 667777766543 34567888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
+....+.+|.+.+ +.+|.+++++|++++++||++.....++.... -...+....+.+++++||||++|..| |
T Consensus 183 ~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G--~~~~~~~~~~~di~~gTlsKa~g~~G---g 254 (396)
T d2bwna1 183 FESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAG--VAERDGLMHRIDIFNGTLAKAYGVFG---G 254 (396)
T ss_dssp EESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC--HHHHHTCGGGCSEEEEESSSTTCSCC---E
T ss_pred EEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecccccc--chhhcCCceeeeeeeecccccccccc---c
Confidence 8888888898877 45889999999999999999766555432111 22222223456799999999999888 8
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhc-cccCCChhHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARA-MYGSPPVHGILL-VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
++. + +++ +++.++...+. .+.++.++.+.+ +.+.+.-.. ....++.++++..+.+++++.+..+|+
T Consensus 255 ~v~--~-~~~----~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~-----~~~~~~~r~~l~~~~~~~~~~l~~~g~ 322 (396)
T d2bwna1 255 YIA--A-SAR----MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK-----TAEGQKLRDAQQMHAKVLKMRLKALGM 322 (396)
T ss_dssp EEE--E-CHH----HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccc--h-hHH----HHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 875 3 888 88888776553 333333333333 222222100 023355677788888999999999885
Q ss_pred CCCccccccCcc-eeEecCCC---HHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLG-MFCFSGLT---PYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 359 ~~~~~~~~~~~g-~~~~~~~~---~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+ ....... ..+++|-. .+...++|+++||.+.+. | ||++.. .|.+||++++++|+++
T Consensus 323 ~----~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 323 P----IIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp C----BCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred C----cCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 3 3333332 22344542 234466777889988642 3 888743 4889999999999876
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.1e-20 Score=178.21 Aligned_cols=324 Identities=14% Similarity=0.101 Sum_probs=216.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++++.+||+..+|... ..-+.+++.+.+++. .+ ....++...-+.+|.+.+|+++ +.. . ++
T Consensus 36 ~g~~~l~f~s~dYLGl---~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~-g~e-------~--al 102 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGL---SHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL-GYS-------R--AL 102 (383)
T ss_dssp TTEEEEECSCCCTTSG---GGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-TCS-------E--EE
T ss_pred CCeEEEEEEccccccc---CCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc-CCC-------c--eE
Confidence 5678999999887444 333344444444443 21 1222444455678999999988 432 3 33
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++++|..|...+ +.++..++|.|++....+......++..+.+++.++. .|++++++.+.+.++...+|++
T Consensus 103 ~~~SG~~an~~~--i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~ 173 (383)
T d1bs0a_ 103 LFISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT 173 (383)
T ss_dssp EESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred EecccchhhHHH--HHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEe
Confidence 789999998887 7888899999999999998888888888887776653 3889999999877677889999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
+.+.+.+|.+.+.+ +|.++|++|++++++||++.....+. .........+. ...+.+.|++|.+|.+| |+
T Consensus 174 e~v~s~~G~i~pl~---~l~~l~~~~~~~livDeah~~gv~G~---~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~ 243 (383)
T d1bs0a_ 174 EGVFSMDGDSAPLA---EIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AA 243 (383)
T ss_dssp ESBCTTTCCBCCHH---HHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EE
T ss_pred cCCCCCCCcccchh---HHHHHHHhcCcEEEeecceeeeecCC---cccchHHHcCC-ccccccccccccccccc---cc
Confidence 99999999988755 78888999999999999987766553 11222222222 34556789999999887 88
Q ss_pred EEEEecChhHHHHHHHHHHHHhh-ccccCCChhHH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIAR-AMYGSPPVHGI-LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+.+ +.+ +++.++.... ..+..+..+.+ .++..++.-. + ....+..++++.++..++.+.|.++|.
T Consensus 244 v~~---~~~----~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~---~--~~~~~~~~~~l~~~~~~~~~~l~~~g~- 310 (383)
T d1bs0a_ 244 VLC---SST----VADYLLQFARHLIYSTSMPPAQAQALRASLAVI---R--SDEGDARREKLAALITRFRAGVQDLPF- 310 (383)
T ss_dssp EEE---CHH----HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHHHTTSSC-
T ss_pred ccc---chh----HHHHHHhhchhhhhcccccchHHHHHHHHHHHH---H--hhhhHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 854 777 7777766544 22332333322 2222332211 0 133456677888888999999988874
Q ss_pred CCccccccCcc-eeEecCCC--HHHHHHHhhhccEEEeC-------CC----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 360 LNWEHITNQLG-MFCFSGLT--PYQVDRLAKEFHIYMTQ-------DG----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 360 ~~~~~~~~~~g-~~~~~~~~--~~~~~~ll~~~gI~i~p-------gg----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
........ ..++++-. ...+.+.|.++||++.+ -| ||++.. .++|+|+++++.|.++
T Consensus 311 ---~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 311 ---TLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ---EECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ---ccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 33333332 22344432 22333344568999864 23 888743 4889999999988753
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=3.8e-21 Score=180.27 Aligned_cols=314 Identities=12% Similarity=0.011 Sum_probs=194.4
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEE
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYF 148 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv 148 (435)
|.+.+++++.....+ ...|++.....+|++.+|+++ |.+ +.+ +++||++|+.++ +.++..+||.+++
T Consensus 12 p~p~v~~A~~~a~~g-~~~yg~~p~~~~le~~lA~~~-G~~-------~~~--~~~sGt~A~~~a--l~a~~~~g~~~~~ 78 (343)
T d1m6sa_ 12 PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKE-------AAL--FVPSGTMGNQVS--IMAHTQRGDEVIL 78 (343)
T ss_dssp CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHT-TCS-------EEE--EESCHHHHHHHH--HHHHCCTTCEEEE
T ss_pred CCHHHHHHHHhhhcC-CcccCCCHHHHHHHHHHHHHH-CCC-------eEE--EeCCHHHHHHHH--HHHHhccCCceec
Confidence 345566666554434 345888778899999999987 442 344 789999998887 7888889999999
Q ss_pred cCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCC-cEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 149 PDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDS-SFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 149 ~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~-~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
..+.+..+.. .....+..+..++. ..+..|++.+++.+... .++ ...++.+.++|++|.+.+.+++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 155 (343)
T d1m6sa_ 79 EADSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC 155 (343)
T ss_dssp ETTCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred cccccceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence 9988765533 22233334444443 33567999999888643 122 34666677889999999999999999
Q ss_pred HHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 222 YQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
++|++|++++++|+++..+........ .. ..... .... + ++|..+..|.+.|+.+. ..+ .+.....
T Consensus 156 ~~~~~~g~~~~~D~a~~~~~~~~~~~~--~~-~~~~~-~~~~-~--~~~~~~~~g~~~~~~~~---~~~----~~~~~~~ 221 (343)
T d1m6sa_ 156 TIAKEHGINVHIDGARIFNASIASGVP--VK-EYAGY-ADSV-M--FCLSKGLCAPVGSVVVG---DRD----FIERARK 221 (343)
T ss_dssp HHHHHHTCEEEEEETTHHHHHHHHCCC--HH-HHHHT-CSEE-E--EESSSTTCCSSCEEEEE---CHH----HHHHHHH
T ss_pred HHHHhcCeEEEeccccccccccccccc--hh-hhccc-cccc-c--ccccccccccccccccc---cHH----HHhhhHh
Confidence 999999999999999765442210000 00 01111 1222 2 33333335566677753 666 5555555
Q ss_pred HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----
Q 013839 302 IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---- 377 (435)
Q Consensus 302 ~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---- 377 (435)
.......+.+.....++...... .......+...++...+.+.+..++. .....+..+.++|+.+
T Consensus 222 ~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~ 290 (343)
T d1m6sa_ 222 ARKMLGGGMRQAGVLAAAGIIAL--------TKMVDRLKEDHENARFLALKLKEIGY---SVNPEDVKTNMVILRTDNLK 290 (343)
T ss_dssp HHHHHTCCCSSTHHHHHHHHHHH--------HHSSTTHHHHHHHHHHHHHHHHHHTC---BCCGGGCCSSEEEEECTTSS
T ss_pred hCcccccccchhHHHHHhhhhhh--------hhhHHHHHHHHHHHHHhhhHHHHhcc---CccCCCCCceEEEEEeCCCc
Confidence 44433344444433333322211 11112223344444555666666653 2233344455677643
Q ss_pred -CHHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 378 -TPYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 378 -~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
+...+...|+++||.+.|.| ||+++. .++|+|++++++|+++++++
T Consensus 291 ~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44444444467899999875 887643 47899999999999999875
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.86 E-value=4.4e-21 Score=183.57 Aligned_cols=284 Identities=15% Similarity=0.073 Sum_probs=184.2
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHH----HHhhCCCCee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHN----IWRDAQIPER 168 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~ 168 (435)
..++|+.+|+++ +.+ +++|+ +|+|+++|+.++ +.++ +.+||+|++.++.|+.... ..+..|++++
T Consensus 52 ~~~~r~~la~~~-~~~-----~~~i~--~~~g~t~a~~~~--~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~ 121 (381)
T d1elua_ 52 IAQLRQALAETF-NVD-----PNTIT--ITDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYR 121 (381)
T ss_dssp HHHHHHHHHHHT-TSC-----GGGEE--EESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHh-CCC-----cccEE--EECChHHHhhhc--chhhhhcCCceEEEeccccceeeecccccccccccccc
Confidence 346788888887 333 56888 899999999888 6665 6799999999999976544 3445789998
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh----cCceeeeeccCCCccCCC
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV----KGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~----~~~~vi~Deay~~~~~~~ 244 (435)
.+|..+......+.+.+++.+. ++++++++++++||||..++.+ +|.++|++ +++++++|.++......
T Consensus 122 ~v~~~~~~~~~~~~~~l~~~i~---~~t~~v~i~~~~n~tG~~~~~~---~I~~l~~~~~~~~~~~~~vD~~~~~g~~~- 194 (381)
T d1elua_ 122 FFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVLPLA---EIMAVCRRHQGNYPVRVLVDGAQSAGSLP- 194 (381)
T ss_dssp EECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBCCHH---HHHHHHHHCCSSSCCEEEEECTTTBTTBC-
T ss_pred ccccccccccchHHHHHHhhhc---ccccccccccccccccccchhh---HHHHHHhhccccccccccccccccccccc-
Confidence 8887422222222344555554 7899999999999999999876 66777776 46899999986432211
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH----------------------
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI---------------------- 302 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~---------------------- 302 (435)
.+ ....+.++++.|+.|.++.| .++|++.+ .++ ....+...
T Consensus 195 ~~---------~~~~~~D~~~~s~~K~~~~p-~G~g~l~~---~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 257 (381)
T d1elua_ 195 LD---------FSRLEVDYYAFTGHKWFAGP-AGVGGLYI---HGD----CLGEINPTYVGWRSITYGAKGEPTGWAEGG 257 (381)
T ss_dssp CC---------TTTSCCSEEEEESSSTTCCC-TTCEEEEE---CTT----TGGGCCCCSCCTTTEEECTTSCEEEECSGG
T ss_pred cc---------cccccccccccccccccccc-chhhHHHh---hHH----HHHhcCcccccccccccccccccccccccc
Confidence 11 12234578899999998733 55677754 555 33322210
Q ss_pred hhccccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc---ccCcceeEec--C
Q 013839 303 ARAMYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI---TNQLGMFCFS--G 376 (435)
Q Consensus 303 ~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~g~~~~~--~ 376 (435)
.+.....++.....++.+++.... .. ..+...++..++++++.+.|++++. +..+ .+.++++.|. +
T Consensus 258 ~~~~~gt~~~~~~~~~~~a~~~~~-----~~g~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~vsf~~~~ 329 (381)
T d1elua_ 258 KRFEVATSAYPQYAGLLAALQLHQ-----RQGTAEERYQAICQRSEFLWRGLNQLPH---VHCLATSAPQAGLVSFTVDS 329 (381)
T ss_dssp GGGCCSCCCHHHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHHSTT---EEESCSSCCSSSEEEEEECS
T ss_pred cccccccccchhhhhhhhhhhhHH-----HhcccccchhhhhhHHHHHHHHHhcCCC---eEecCCCCccccEEEEEcCC
Confidence 001122344444444444443211 01 1234456777788899999998753 3333 3456655442 3
Q ss_pred -CCHHHHHHHhhhccEEEeCC---C--cEEeccC-CCCcHHHHHHHHHHH
Q 013839 377 -LTPYQVDRLAKEFHIYMTQD---G--RISMAGV-TTGNVNYLANAIHEV 419 (435)
Q Consensus 377 -~~~~~~~~ll~~~gI~i~pg---g--Ris~~~~-~~e~i~~~~~~l~~~ 419 (435)
.+.+.+.+.|+++||.++.. + |+|++.. |.+|+++++++|+++
T Consensus 330 ~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 330 PLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp SSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 35566666678899998642 2 9997543 679999999998763
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.4e-18 Score=167.22 Aligned_cols=288 Identities=15% Similarity=0.140 Sum_probs=197.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHH--HHHhCCCCEEEEcCCCChhhHH----HHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF--QRRFHPESHIYFPDPTWSNHHN----IWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~--~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~ 167 (435)
+.+.|+.+++++.... ++++. ++.++|+++..++.. ...+.+||+|++.+-.|+.... ..+..|+++
T Consensus 68 ~e~~R~~ia~~l~~~~-----~~~i~--~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v 140 (405)
T d1jf9a_ 68 MENVRKRASLFINARS-----AEELV--FVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAEL 140 (405)
T ss_dssp HHHHHHHHHHHTTCSC-----GGGEE--EESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHcCCCC-----ccccc--ccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEE
Confidence 5577889999985333 35777 899999999887522 1246799999999988876543 345679999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.+|. ..++.+|++.+++++. ++|++++++..+|.||..++.+ +|+++|+++|+++++|.+.. ....+.
T Consensus 141 ~~~~~--~~~g~~~~~~~~~~i~---~~t~lv~~~~v~~~tG~~~pi~---~i~~~~~~~g~~~~vD~~q~-~g~~~i-- 209 (405)
T d1jf9a_ 141 RVIPL--NPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTENPLA---EMITLAHQHGAKVLVDGAQA-VMHHPV-- 209 (405)
T ss_dssp EEECB--CTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBCCHH---HHHHHHHHTTCEEEEECTTT-TTTSCC--
T ss_pred EEECC--CCCCcCCHHHHHHhcc---CCcEEEEEecCCCcccccCchH---HhhhHHHHcCCeeeccccee-cccccc--
Confidence 99998 3456899999999988 8899999999999999999866 88999999999999999943 332222
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH----------------------hhc
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI----------------------ARA 305 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----------------------~~~ 305 (435)
+ +.. .+-++++.|..|.+|.+| +|++.+ +++ ..+.+... .+.
T Consensus 210 d---~~~----~~~D~~~~s~hK~~Gp~G--~g~l~v---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 273 (405)
T d1jf9a_ 210 D---VQA----LDCDFYVFSGHKLYGPTG--IGILYV---KEA----LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRF 273 (405)
T ss_dssp C---HHH----HTCSEEEEEGGGTTSCSS--CEEEEE---CHH----HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGG
T ss_pred c---hhh----cCCceeeccccccccCCC--ceeeee---chh----hhcccCcccccccccCccccccccccccchhhh
Confidence 1 111 145788999999998777 577754 666 44332210 011
Q ss_pred cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEe--cCCCHHH
Q 013839 306 MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCF--SGLTPYQ 381 (435)
Q Consensus 306 ~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~--~~~~~~~ 381 (435)
...+++.....++..+++-.. +...+...++.....+.+.+.++..+. .....+ ..+.+.+ .+.+.+.
T Consensus 274 e~GT~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~L~~~~~~~l~~~~~---~~~~~~~~r~~ivsf~~~~~~~~~ 345 (405)
T d1jf9a_ 274 EAGTPNTGGIIGLGAALEYVS-----ALGLNNIAEYEQNLMHYALSQLESVPD---LTLYGPQNRLGVIAFNLGKHHAYD 345 (405)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCTTCCSEEEEEETTCCHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHhhhhcCCc---ccccCCcCcCcEEEEEcCCCCHHH
Confidence 123455555555555554211 123455566666666777777776653 222222 2343332 3567777
Q ss_pred HHHHhhhccEEEeCC--------------C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 382 VDRLAKEFHIYMTQD--------------G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 382 ~~~ll~~~gI~i~pg--------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+...|+++||.++.| | |+|++.. +.+|+++++++|+++++-+
T Consensus 346 ~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 346 VGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp HHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 766778899998743 2 9998643 7789999999999987653
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=6e-19 Score=168.22 Aligned_cols=287 Identities=17% Similarity=0.173 Sum_probs=184.6
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHH-H-HHHhCCCCEEEEcCCCChhhHHHH---hhCCCCeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAE-F-QRRFHPESHIYFPDPTWSNHHNIW---RDAQIPERT 169 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~-~-~~~~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~ 169 (435)
.+.|+.+++++ +.+ +++|. ++.|+|+++..++. + .....+|+.|++....|+.+.... +..|++++.
T Consensus 47 ~~aR~~ia~l~-~~~-----~~~i~--~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~ 118 (376)
T d1eg5a_ 47 EKAREKVAKVL-GVS-----PSEIF--FTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKY 118 (376)
T ss_dssp HHHHHHHHHHH-TSC-----GGGEE--EESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHc-CCC-----CCcEE--EECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEE
Confidence 45688899888 443 56888 99999999888852 2 234568899999998887776544 566999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
+|+ ++++.+|+++++++++ ++|+++++++++|+||..++.+++.++++ +++.++++++|.+.. +...+.+
T Consensus 119 vp~--~~~~~id~~~l~~~i~---~~t~lv~is~v~~~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q~-~g~~~~d--- 188 (376)
T d1eg5a_ 119 VPV--DSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQPVEDVTRIVK-KKNKETLVHVDAVQT-IGKIPFS--- 188 (376)
T ss_dssp CCB--CTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBCCHHHHHHHHH-HHCTTCEEEEECTTT-TTTSCCC---
T ss_pred EcC--CCCCeECHHHHHHhcC---CCceEEEEECCccccceeeeehhhhhhhh-hcccCceeEEEeeec-ccccccc---
Confidence 998 3457899999999998 78999999999999999998885544433 344589999998843 2222111
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHHHh
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVATIL 322 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~~l 322 (435)
....+.+++++|++|.+|.+|.++.|+ .++ .. ++... .......+......+....
T Consensus 189 ------~~~~~~D~~~~s~~K~~gp~G~~~l~~-----~~~----~~--~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T d1eg5a_ 189 ------LEKLEVDYASFSAHKFHGPKGVGITYI-----RKG----VP--IRPLIHGGGQERGLRSGTQNVPGIVGAARAM 251 (376)
T ss_dssp ------CTTTCCSEEEEEGGGGTSCTTCEEEEE-----CTT----SC--CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHH
T ss_pred ------ccccCccceecccceeecCCCceeEEe-----ccC----cc--cCCcccCCCCcccccCCcccchhhhhHHHHh
Confidence 122345789999999999888766665 333 10 11100 1111223333333333332
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ccccccCcceeEecCCCHHHHHHHhhhccEEEeCC----
Q 013839 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN--WEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD---- 396 (435)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg---- 396 (435)
... .................+.+.|...+.... ..........+.+.+...+.+...|+++||.+++|
T Consensus 252 ~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~ 325 (376)
T d1eg5a_ 252 EIA------VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACT 325 (376)
T ss_dssp HHH------HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC-----
T ss_pred hcc------ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhc
Confidence 211 122333444455555666777765532100 01111112233344677788877788899998754
Q ss_pred -------------C----------cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 397 -------------G----------RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 -------------g----------Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
| |+|++.. |++|+++++++|++++.-
T Consensus 326 ~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 326 SKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp -------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 9997543 789999999999998863
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=7.1e-18 Score=157.52 Aligned_cols=327 Identities=14% Similarity=0.045 Sum_probs=194.0
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+...+|+..++ . .+.|.+.+++.+...+....|.+.....++|+.+++++ +.+ ..++ +|+||++|
T Consensus 2 ~~~~~f~s~n~---~---g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~-g~~------~~v~--f~~sGt~A 66 (345)
T d1v72a1 2 PPALGFSSDNI---A---GASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIF-ERD------VEVF--LVPTGTAA 66 (345)
T ss_dssp CCCCBCSCGGG---C---CCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHH-TSC------CEEE--EESCHHHH
T ss_pred CCCcCcCCCCC---C---CCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHH-CCC------cEEE--ECCchHHH
Confidence 34567776664 1 12334444555433333456878778889999999998 442 3455 79999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC----CCcEEEEeC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP----DSSFFLLHP 202 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~----~~~~~v~~~ 202 (435)
+..+ +...+.+++.+++....+..+.. .....+..+..++. ..+...+++.+++.+.... .....++.+
T Consensus 67 n~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (345)
T d1v72a1 67 NALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACVSI 142 (345)
T ss_dssp HHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEE
T ss_pred HHHH--HHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceeeee
Confidence 8887 66677788887777755443322 22344555554432 4456789999999987531 123455666
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
++.|++|...+.++++++.++|++|+++++.|+++....... ...................+..|..+.. .+..
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 216 (345)
T d1v72a1 143 TQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS---LGCSPAEMTWKAGVDALSFGATKNGVLA---AEAI 216 (345)
T ss_dssp ESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH---HTCCTTTTTGGGTCCEEEECCGGGTCSS---CEEE
T ss_pred eccccccccccchhhhhHHHHHHhcCceeeecccccceeccc---cccCHHHhhccccccccccCcccccccc---cccc
Confidence 788999999999999999999999999999999975433210 0000000001112233333344333212 2333
Q ss_pred EEEecChhHHHHHHHHHHHHhhccccCCChhHHHH--HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 283 SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL--VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~--~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
. ..... ................+.....+ ....+.+. ...+...+..++...+.+.+.+++.
T Consensus 217 ~--~~~~~----~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~g-- 280 (345)
T d1v72a1 217 V--LFNTS----LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD--------LWLRNARKANAAAQRLAQGLEGLGG-- 280 (345)
T ss_dssp E--ESSGG----GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHHHHTTCTT--
T ss_pred c--cchhh----hhhhccccccccccccchhhHHhhhhHHHHHHh--------hhhhhccchhhHHHHHHHHHHhcCC--
Confidence 2 22433 22222221122222222222222 22233332 2234445555566667777777753
Q ss_pred CccccccCcceeEecCCCHHHHHHHhhhccEEEeCC--C----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 361 NWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD--G----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 361 ~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg--g----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+....+..+.++++.+..+.++.++ ++||.+.++ | ||+++. .|+|+|++++++|+++
T Consensus 281 -~~~~~p~~~niv~~~~~~~~~~~L~-~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 281 -VEVLGGTEANILFCRLDSAMIDALL-KAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp -EEEESCCCSSEEEEEECHHHHHHHH-HTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred -cEeccCCCccEEEEEcCHHHHHHHH-HcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5566666677888888888778775 478887544 2 888753 3789999999999864
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.77 E-value=8.9e-17 Score=154.55 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=195.6
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHH--HHHhCCCCEEEEcCCCChhhHH----HHhhCCCCe
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEF--QRRFHPESHIYFPDPTWSNHHN----IWRDAQIPE 167 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~--~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~ 167 (435)
+.+.|+.+++++.... ++.+. ++.++++++.+++.. ...+.+||+|++.+-.|+.... ..+..|+++
T Consensus 68 ~e~aR~~ia~llga~~-----~~~i~--~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v 140 (408)
T d1t3ia_ 68 YEAVRNKVAKFINARS-----PREIV--YTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 140 (408)
T ss_dssp HHHHHHHHHHHTTCSC-----GGGEE--EESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHhCCCC-----cccEE--eecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceE
Confidence 3467888988884332 34566 788888888877422 1246789999999988876543 344568888
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
..+|. ..+...+.+.+++.+. +++++++++..+|-||..++.+ +|.++|+++|+++++|.+ +.++..+.+
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~---~~t~lv~i~~~~~~tG~~~p~~---~i~~~~~~~g~~~ivDa~-q~~g~~~id- 210 (408)
T d1t3ia_ 141 KFVQL--DEQESFDLEHFKTLLS---EKTKLVTVVHISNTLGCVNPAE---EIAQLAHQAGAKVLVDAC-QSAPHYPLD- 210 (408)
T ss_dssp EEECB--CTTSSBCHHHHHHHCC---TTEEEEEEESBCTTTCBBCCHH---HHHHHHHHTTCEEEEECT-TTTTTSCCC-
T ss_pred eeeec--cccccccHHHhhhccC---CCceEEEEecccccccccCcHH---HHhhhhhccCceeeeccc-eeccccccc-
Confidence 88887 3456789999999887 7899999999999999999865 888999999999999998 444433221
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------hcc
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------RAM 306 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~ 306 (435)
+.. .+.++++.|..|.+|.+| +|++.+ .++ ......... +.-
T Consensus 211 ----~~~----~~~D~~~~s~hK~~gp~G--~g~l~v---~~~----~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e 273 (408)
T d1t3ia_ 211 ----VQL----IDCDWLVASGHKMCAPTG--IGFLYG---KEE----ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFE 273 (408)
T ss_dssp ----HHH----HTCSEEEEEGGGTTSCTT--CEEEEE---CHH----HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGC
T ss_pred ----ccc----cCCceEEeccccccCCCC--cccccc---chh----hhhcCCceecCCcccccccccccccCCchhhhc
Confidence 111 134688999999987666 577754 766 443322110 111
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc------ccCccee--EecCCC
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI------TNQLGMF--CFSGLT 378 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~g~~--~~~~~~ 378 (435)
..+++.....++..+++-- .+...++++++..+..+++.+.++..+. +... ....+.. ...+.+
T Consensus 274 ~Gt~~~~~~~~l~~al~~~-----~~~g~~~i~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~iv~f~~~~~~ 345 (408)
T d1t3ia_ 274 AGTPAIAEAIALGAAVDYL-----TDLGMENIHNYEVELTHYLWQGLGQIPQ---LRLYGPNPKHGDRAALASFNVAGLH 345 (408)
T ss_dssp CSSCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHTCTT---EEEESCCGGGSCBCSEEEEEETTBC
T ss_pred CCcHHHHHHHHHHHHHHHH-----HHcCHHHHHHHHHHHHhHHhhhhccCcc---ccccCCCccccCcceEEEEEeCCCC
Confidence 2344555555555555321 1123456667777788888888877653 2222 1223333 334778
Q ss_pred HHHHHHHhhhccEEEeCC--------------C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 379 PYQVDRLAKEFHIYMTQD--------------G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg--------------g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+...|+++||.+..| | |||+... |.+|++++++.|+++++.
T Consensus 346 ~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 346 ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 777766778899998754 2 9998543 789999999999998864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.77 E-value=1.3e-16 Score=154.86 Aligned_cols=304 Identities=15% Similarity=0.082 Sum_probs=192.1
Q ss_pred CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh
Q 013839 82 GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR 161 (435)
Q Consensus 82 ~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~ 161 (435)
.+ ...|.......+|.+.+++++ |.. .. +.+++|+.|+.++ +.+++++||+|+.... +......+.
T Consensus 66 ~G-Dd~Y~~dpt~~~lE~~~a~l~-G~e-------~a--l~~~SGt~An~~a--~~~l~~~Gd~Vi~~~~-f~~~~~~i~ 131 (456)
T d1c7ga_ 66 IG-DEAYAGSENFYHLEKTVKELF-GFK-------HI--VPTHQGRGAENLL--SQLAIKPGQYVAGNMY-FTTTRFHQE 131 (456)
T ss_dssp SC-CCCSSSCHHHHHHHHHHHHHH-CCS-------EE--EEESSHHHHHHHH--HHHHCCTTEEEEESSC-CHHHHHHHH
T ss_pred cc-chhccCCchHHHHHHHHHHHh-CCC-------eE--EECCCHHHHHHHH--HHHhcCCCCeEecCcc-hHHHHHHHH
Confidence 44 344888888899999999998 442 33 3799999999888 7888999999987765 444444556
Q ss_pred hCCCCeeeeeec--------CCCCCCcChHhHHHHhhcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCcee
Q 013839 162 DAQIPERTYHYY--------DPDSKSLDFAALMDDIKNAP-DSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 162 ~~g~~~~~v~~~--------~~~~~~~d~e~l~~~i~~~~-~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~v 231 (435)
..|+.++.+... +...+.+|++.|++.+++.. ..+.++++.+++|+. |..++.+++++|.++|++||+.+
T Consensus 132 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~ 211 (456)
T d1c7ga_ 132 KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKI 211 (456)
T ss_dssp HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred HcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEE
Confidence 677776554321 12346789999999997642 445788899999986 67889999999999999999999
Q ss_pred eeeccCCCc----------cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 232 FFDMAYQGF----------ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 232 i~Deay~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
++|++.... .+.+ .+...+..-.- ..-.++..|++|.++.++ .|+++ +++++ +.++.+.
T Consensus 212 ~~D~a~~~~~a~~~~~~~~~~~~--~~i~~i~~~~~-~~ad~~s~s~~K~~~~~~--GG~i~--~~~~~----l~~~~r~ 280 (456)
T d1c7ga_ 212 FYDATRCVENAYFIKEQEAGYEN--VSIKDIVHEMF-SYADGCTMSGKKDCLVNI--GGFLC--MNDEE----MFSAAKE 280 (456)
T ss_dssp EEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHH-TTCSEEEEETTTTTCCSS--CEEEE--ESCHH----HHHHHHH
T ss_pred EEEcchhhcchhhhcccccccCC--CChhhhccccc-cccccEEEeccccccccc--eeEEE--cCCHH----HHHHHHH
Confidence 999985311 1111 11222211000 122456678999987543 25553 55666 5544443
Q ss_pred Hhh-----ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC
Q 013839 302 IAR-----AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG 376 (435)
Q Consensus 302 ~~~-----~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~ 376 (435)
... ....+.+.....+++..+.... .....++-.++.++|.+.|.+.|.+ +..+.++...+++
T Consensus 281 ~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~--------~~~~l~~r~~~~~~L~e~L~~~g~~----vv~p~g~~~v~vd 348 (456)
T d1c7ga_ 281 LVVVYEGMPSYGGLAGRDMEAMAIGLREAM--------QYEYIEHRVKQVRYLGDKLREAGVP----IVEPTGGHAVFLD 348 (456)
T ss_dssp HHHHHTCCTTTTTCCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHHHTTCC----BCSSCCSSEEEEE
T ss_pred hccccCCCcccchhhHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHHhccCC----cccCCCCcceeEe
Confidence 321 1122233333333322222110 0112223344557888899988853 5556666555441
Q ss_pred -------C------CHHHHHHHhhhccEEEeCCC---------------------cEEecc--CCCCcHHHHHHHHHHHH
Q 013839 377 -------L------TPYQVDRLAKEFHIYMTQDG---------------------RISMAG--VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 377 -------~------~~~~~~~ll~~~gI~i~pgg---------------------Ris~~~--~~~e~i~~~~~~l~~~l 420 (435)
+ ..+.+..++.+.||...+.| |+++.. .|.++|++++++|+++.
T Consensus 349 a~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~ 428 (456)
T d1c7ga_ 349 ARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp HHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred chhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHH
Confidence 1 12355666667899765421 888752 37899999999999987
Q ss_pred Hh
Q 013839 421 RS 422 (435)
Q Consensus 421 ~~ 422 (435)
++
T Consensus 429 ~~ 430 (456)
T d1c7ga_ 429 QH 430 (456)
T ss_dssp TT
T ss_pred hh
Confidence 64
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.76 E-value=3.5e-17 Score=151.53 Aligned_cols=312 Identities=11% Similarity=0.037 Sum_probs=182.9
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD 150 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~ 150 (435)
|.+.+++.+........|++.....++|+.+++++ +.. +++|. +|+||++|+.++ +...+.+++.+++..
T Consensus 14 P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~-g~~-----~~~v~--~tsggtean~~a--~~~~~~~~~~~~~~~ 83 (340)
T d1svva_ 14 PKILDLMARDNMTQHAGYGQDSHCAKAARLIGELL-ERP-----DADVH--FISGGTQTNLIA--CSLALRPWEAVIATQ 83 (340)
T ss_dssp HHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHH-TCT-----TSEEE--EESCHHHHHHHH--HHHHCCTTEEEEEET
T ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHh-CCC-----cceEE--EcCCHHHHHHHH--HHHHhhhcccccccc
Confidence 33444444433333566888888899999999998 432 45777 899999998887 777888999999998
Q ss_pred CCChhhHHHHh--hCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 013839 151 PTWSNHHNIWR--DAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFK 225 (435)
Q Consensus 151 p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~ 225 (435)
+.+..+..... ..+........ .....+.+......... ...+..++++.+.|++|.+...+++..+.+.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (340)
T d1svva_ 84 LGHISTHETGAIEATGHKVVTAPC---PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCK 160 (340)
T ss_dssp TSHHHHSSTTHHHHTTCCEEEECC---TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHH
T ss_pred ccceeeeecccccccceeeeeccc---ccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccc
Confidence 88766543222 23333333322 22233444444333221 122344444455566777788899999999999
Q ss_pred hcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-
Q 013839 226 VKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR- 304 (435)
Q Consensus 226 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~- 304 (435)
+++.+++.|++|........ ........... ...+...+..|.. .+.+.++.. . ... ..........
T Consensus 161 ~~g~~~~~d~a~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~--~-~~~----~~~~~~~~~~~ 228 (340)
T d1svva_ 161 EHGLYLFLDGARLASALSSP-VNDLTLADIAR--LTDMFYIGATKAG--GMFGEALII--L-NDA----LKPNARHLIKQ 228 (340)
T ss_dssp HHTCEEEEECTTHHHHHTST-TCCCCHHHHHH--HCSEEEEECTTTT--CSSCEEEEE--C-SGG----GCTTHHHHHHH
T ss_pred cccceeeeeccceeeeeccc-ccccccccccc--cceeeecCCcccc--ccccccccc--c-chh----hhhhhhhhccc
Confidence 99999999999754322111 00111111111 1233334444443 333344443 2 333 2222222221
Q ss_pred -ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHH
Q 013839 305 -AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVD 383 (435)
Q Consensus 305 -~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 383 (435)
............++...+... ......++..++++.+.+.|+..|. .+..|..+.++++.++.+...
T Consensus 229 ~~~~~~~~~~~~aa~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~g~----~~~~p~~~~~v~~~~~~~~~~ 296 (340)
T d1svva_ 229 RGALMAKGWLLGIQFEVLMKDN--------LFFELGAHSNKMAAILKAGLEACGI----RLAWPSASNQLFPILENTMIA 296 (340)
T ss_dssp TTCCCTTTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHHHHHHTTC----CBSSCCSSSEECBEEEHHHHH
T ss_pred ccCccchhhHHHHHHHHHhhhh--------HHHHHHHHHHHHHhhhHHHHhcCCC----eeecCCCceEEEEeCCHHHHH
Confidence 222222233333333344432 2344556677788888899998874 556566677888888877777
Q ss_pred HHhhh---ccEEEeCCC----cEEecc-CCCCcHHHHHHHHHHH
Q 013839 384 RLAKE---FHIYMTQDG----RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 384 ~ll~~---~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+++++ .++.+.+.| ||+++. .|+++|++++++|+++
T Consensus 297 ~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 297 ELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp HHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 77654 344455555 997642 3889999999998863
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.9e-17 Score=157.08 Aligned_cols=294 Identities=12% Similarity=0.075 Sum_probs=187.6
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH--HHhhCCCCeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN--IWRDAQIPERTY 170 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v 170 (435)
-+.+.|+.+++.+...+. ..|+ ++.|||++++.+ +..++.+||++++....+..... .....+..+..+
T Consensus 53 i~~ea~~~l~~llg~~~~-----~~ii--~~gsgT~a~~~~--i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (388)
T d1h0ca_ 53 IMDEIKEGIQYVFQTRNP-----LTLV--ISGSGHCALEAA--LVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPM 123 (388)
T ss_dssp HHHHHHHHHHHHHTCCCS-----EEEE--ESSCHHHHHHHH--HHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCC
T ss_pred HHHHHHHHHHHHhCCCCC-----cEEE--EcCcHHHHHHHH--HHHhhccCCceeeecccceeeeecccccccccccccc
Confidence 356778888777743321 1355 788899999998 88888999999999887765433 344566666666
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. .....+|.+++++.+.+ .+++++++++.+|.||+..+.+ +|.++|++||+++++|.+.. +...+.+
T Consensus 124 ~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~n~tG~i~pi~---~i~~~~~~~g~~~~vD~~qs-~g~~~~d---- 191 (388)
T d1h0ca_ 124 TK--DPGGHYTLQEVEEGLAQ--HKPVLLFLTHGESSTGVLQPLD---GFGELCHRYKCLLLVDSVAS-LGGTPLY---- 191 (388)
T ss_dssp BC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---THHHHHHTTTCEEEEECTTT-TTTSCCC----
T ss_pred cc--CCccccchHHHHHHhcc--CCcceEEEeeeeeccccccCHH---HHHHHhhcccccceeccccc-ccccccc----
Confidence 55 44567888888887764 4578888899999999998765 89999999999999999943 3322111
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-----------------------hccc
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-----------------------RAMY 307 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~ 307 (435)
.+..+.++++.|..|.++.++ .+|++++ +++ .++.+.... ....
T Consensus 192 -----~~~~~~D~~~~s~~K~~~gp~-g~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (388)
T d1h0ca_ 192 -----MDRQGIDILYSGSQKALNAPP-GTSLISF---SDK----AKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYH 258 (388)
T ss_dssp -----TTTTTCSEEEEESSSTTCCCT-TCEEEEE---CHH----HHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCC
T ss_pred -----ccccccceecccccccccCCC-ceEEEee---cHH----HHHhhhhccccccccccccchhhhhhhhcccccccc
Confidence 122244677788888875443 2455543 666 333332110 0111
Q ss_pred cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcce--eEec-CCCHHH-H
Q 013839 308 GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGM--FCFS-GLTPYQ-V 382 (435)
Q Consensus 308 ~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~--~~~~-~~~~~~-~ 382 (435)
..++.....++..++..- .+..++...++..+..+++++.++..+......... ...+. |... +.+.+. .
T Consensus 259 ~t~~~~~~~~~~~al~~~-----~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~~~~~ 333 (388)
T d1h0ca_ 259 HTIPVISLYSLRESLALI-----AEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIV 333 (388)
T ss_dssp SCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHH-----HHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCHHHHH
Confidence 223333333333333211 123356777788888888999998887521111101 11122 2221 566554 4
Q ss_pred HHHhhhccEEEeCCC--------cEE-ec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 383 DRLAKEFHIYMTQDG--------RIS-MA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 383 ~~ll~~~gI~i~pgg--------Ris-~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
..+++++||.+..|. ||| ++ ..+.+++++++++|++++++++.
T Consensus 334 ~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 334 SYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp HHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 777777899998762 999 54 23678999999999999998774
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=2.6e-16 Score=149.67 Aligned_cols=278 Identities=12% Similarity=0.046 Sum_probs=178.0
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
....+|.+.+++++... ..+ .+++||.|+.++ +.++ +.+||+|++++.+|......+...|++++.+
T Consensus 31 ~~v~~~E~~la~~~g~~--------~ai--~~~sgt~Al~~a--l~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~ 98 (376)
T d1mdoa_ 31 PKNQELEAAFCRLTGNQ--------YAV--AVSSATAGMHIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMV 98 (376)
T ss_dssp HHHHHHHHHHHHHHCCS--------EEE--EESCHHHHHHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHCcC--------eEE--EeCCHHHHHHHH--HHHhCCCCCCEEEEecccccccccchhccccceeee
Confidence 34689999999998433 233 788999999998 6666 7899999999999999999999999999999
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
++ +++++.+|+++|+++++ ++|++|++. |..|... ++++|.++|+++|++||+|.+.........
T Consensus 99 d~-~~~~~~~d~~~l~~~i~---~~tkaIi~~---h~~G~~~---~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~----- 163 (376)
T d1mdoa_ 99 DV-DRDTLMVTPEHIEAAIT---PQTKAIIPV---HYAGAPA---DLDAIYALGERYGIPVIEDAAHATGTSYKG----- 163 (376)
T ss_dssp CB-CTTTCCBCHHHHHHHCC---TTEEEECCB---CGGGCCC---CHHHHHHHHHHHTCCBCEECTTCTTCEETT-----
T ss_pred cc-cccccCCCHHHHHHhcC---CCCeEEEEe---CCCCCcc---chhHHHHHHHhcCceEEeccchhccCeeCC-----
Confidence 98 56778999999999998 788988874 4567654 466899999999999999999543321100
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccc-----------------------
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMY----------------------- 307 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------- 307 (435)
...+..+..++..+.+|.++ .|. .|.+ ++.+++ +.++++.+.....
T Consensus 164 ---~~~g~~g~~~~Sf~~~K~l~-~g~-GG~i--~t~~~~----l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~ 232 (376)
T d1mdoa_ 164 ---RHIGARGTAIFSFHAIKNIT-CAE-GGIV--VTDNPQ----FADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGY 232 (376)
T ss_dssp ---EETTSSSEEEEECCTTSSSC-SSS-CEEE--EESCHH----HHHHHHHHTBTTEECC-----------CCEESSCCC
T ss_pred ---eecccccCccccCCCcCCCC-CCC-CCEE--EEechh----HHHHHHhhcccCCcccccccccccccccccchhccc
Confidence 01122233333344468886 343 3554 365776 6665555432111
Q ss_pred -cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----cceeEec-------
Q 013839 308 -GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----LGMFCFS------- 375 (435)
Q Consensus 308 -~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~------- 375 (435)
..++.+.......-| +.+.+..++.++.++.+.+.|++++. ....... ..++.++
T Consensus 233 n~~~~~~~Aai~~~qL----------~~~~~~~~~r~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (376)
T d1mdoa_ 233 KYNLPDLNAAIALAQL----------QKLDALNARRAAIAAQYHQAMADLPF---QPLSLPSWEHIHAWHLFIIRVDEAR 299 (376)
T ss_dssp BCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHHTSSC---EECCCCSSCEECCCSCEEEECCHHH
T ss_pred ccccchhhhhhhhhhh----------hhhhHHHHHHhhhhhhhhhhcccccc---ccccccccccccccccccccccccc
Confidence 111111111111111 33445555666677778888887653 1111111 1112222
Q ss_pred -CCCHHHHHHHhhhccEEEeCC----------------C----------c-EEe---ccCCCCcHHHHHHHHHHHH
Q 013839 376 -GLTPYQVDRLAKEFHIYMTQD----------------G----------R-ISM---AGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 376 -~~~~~~~~~ll~~~gI~i~pg----------------g----------R-is~---~~~~~e~i~~~~~~l~~~l 420 (435)
+.+.+.+.+.|++.||.++.. + | +++ ..+++++++++++.|++++
T Consensus 300 ~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 300 CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 123445555557899988632 1 2 333 2357799999999998875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=8.8e-16 Score=143.96 Aligned_cols=212 Identities=13% Similarity=0.101 Sum_probs=153.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 169 (435)
...|.+.+++.-.+.. ++++++|..|+..+ +++++.+||+|++++..|.+....++ ..|.++..
T Consensus 61 ~~~LE~~la~LEg~~~----------a~~~~SGmaAi~~~--l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~ 128 (392)
T d1gc0a_ 61 LNLLEARMASLEGGEA----------GLALASGMGAITST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 128 (392)
T ss_dssp HHHHHHHHHHHHTCSE----------EEEESSHHHHHHHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCCcc----------eeehhhHHHHHHHH--HHhhccCCCeeecccccchhhhhhhhhhhccCCccccc
Confidence 4567777777764332 34799999999888 88899999999999999988877655 45777766
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. -|+++++++++ +++++|++.+|.|||..+.+ +++|+++|+++|+++++|..|..
T Consensus 129 ~d~-------~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~at---------- 185 (392)
T d1gc0a_ 129 VDM-------ADLQALEAAMT---PATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCT---------- 185 (392)
T ss_dssp ECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTH----------
T ss_pred CCc-------cCHHHHHHhCC---CCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccC----------
Confidence 643 37899999998 78999999999999988775 55999999999999999998632
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH--HHhhccccCCChhHHHHHHHHhCChhh
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ--QIARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
++..-+-...-+|++.|.+|.++-.|.-+|.+++ + +.+ .+.+++ .........+++...+.+..-+++
T Consensus 186 -P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~-~-~~~----~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T--- 255 (392)
T d1gc0a_ 186 -PYLQRPLELGADLVVHSATKYLSGHGDITAGIVV-G-SQA----LVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT--- 255 (392)
T ss_dssp -HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEE-E-CHH----HHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT---
T ss_pred -ccccChHHhCCCEEEEecceeecCCccccccccc-c-hhH----HHHHHHHHHHHHccCCcCChhhHHHHHhcccc---
Confidence 1111111224578999999999645555555542 4 666 554433 223334556677766666666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++...+.+.|++++
T Consensus 256 -------L~lRm~~~~~nA~~lA~~L~~hp 278 (392)
T d1gc0a_ 256 -------LNLRMDRHCANAQVLAEFLARQP 278 (392)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566777788888888998775
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.74 E-value=2.1e-15 Score=141.37 Aligned_cols=273 Identities=13% Similarity=0.102 Sum_probs=185.3
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v 170 (435)
..|.+.+++.-.+.. ++.+++|..|+..+ +++++.+||+|++++..|.+....+ ...|.++..+
T Consensus 66 ~~LE~~la~LEgg~~----------a~~~sSGmaAi~~~--l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~v 133 (397)
T d1y4ia1 66 DALEKKLAVLERGEA----------GLATASGISAITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 133 (397)
T ss_dssp HHHHHHHHHHHTCSE----------EEEESSHHHHHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCcc----------ceeehHHHHHHHHH--HhhccCCCCeeeeecccccccchhhhcccCCCceEeecc
Confidence 456666666653321 44689999999888 8889999999999999998776654 4678888777
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. -|++.++++++ +++++|++.+|.|||..+.+ +++|+++|+++|+++++|..|..-..-.
T Consensus 134 d~-------~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~~------ 194 (397)
T d1y4ia1 134 DA-------GKPEEIRAAMR---PETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------ 194 (397)
T ss_dssp CT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------
T ss_pred CC-------CCHHHHHHhcC---CCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccCc------
Confidence 43 27899999997 78999999999999987765 5699999999999999999975422211
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH--HHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ--QIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ + ..-+|++.|.+|.++-.+--+|.+++ + +++ .+.+.+ .........+++...+.+..-|+.
T Consensus 195 Pl----~-~GaDivihS~TKyi~Ghsdvl~G~v~-~-~~~----~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T---- 259 (397)
T d1y4ia1 195 PL----Q-LGADIVVHSVTKYINGHGDVIGGIIV-G-KQE----FIDQARFVGLKDITGGCMSPFNAWLTLRGVKT---- 259 (397)
T ss_dssp GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE-E-CHH----HHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT----
T ss_pred ch----h-cCCCEEEEehhhhcCCCcceeeeccC-C-CHH----HHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc----
Confidence 11 1 13469999999999766666776653 4 666 444332 323334556777777777666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc---------------ccccCcceeEec-CCCHHHHHHHhhhccEE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE---------------HITNQLGMFCFS-GLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------------~~~~~~g~~~~~-~~~~~~~~~ll~~~gI~ 392 (435)
+....++..++...+.+.|+.++.-..+. .....+|++.|. .-+.+...++++.-.+.
T Consensus 260 ------L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~ 333 (397)
T d1y4ia1 260 ------LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELC 333 (397)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCcc
Confidence 34555677788888889998875310000 011136666654 22334445555543333
Q ss_pred E---eCC-------------------------C------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 393 M---TQD-------------------------G------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 393 i---~pg-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
. .-| | |+|++- |+.+.+++.|.++++.
T Consensus 334 ~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl---Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 334 LLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL---EDPEDIINDLEHAIRK 394 (397)
T ss_dssp EECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred ceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc---CCHHHHHHHHHHHHHH
Confidence 2 111 1 999864 8888888988888864
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.74 E-value=2.5e-15 Score=140.62 Aligned_cols=273 Identities=12% Similarity=0.064 Sum_probs=184.3
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v 170 (435)
..|.+.+++.-.+. . ++.+++|..|+. + +++++.+||+|++..+.|.+....++ ..|.++..+
T Consensus 52 ~~le~~la~LE~~~--------~--a~~fsSGMaAis-a--ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 118 (380)
T d1ibja_ 52 DALESLLAKLDKAD--------R--AFCFTSGMAALS-A--VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 118 (380)
T ss_dssp HHHHHHHHHHHTCS--------E--EEEESSHHHHHH-H--HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred HHHHHHHHHHcCCc--------e--EEehhhHHHHHH-H--HHHhhCCCCEEEEEecccccccchhhhhhcccccccccc
Confidence 45666666655332 2 337899999975 3 57789999999999999988877665 356665555
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. .|.+++++++. +++++|++.+|.|||..+.+ +++|+++|+++|+++|+|+.+.......
T Consensus 119 d~-------~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~------ 179 (380)
T d1ibja_ 119 NT-------TKLDEVAAAIG---PQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR------ 179 (380)
T ss_dssp CT-------TSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC------
T ss_pred Cc-------chHHHHHHHhc---cCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccccc------
Confidence 32 37889999987 78999999999999988875 5599999999999999999975432211
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
++ ...-+|++.|.+|.++-.|--+|-.++ .++++ +.+.++.........+++...+.+..-+++
T Consensus 180 Pl-----~~GaDiVvhS~TKyi~GhsDv~~G~v~-~~~~~----~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T------ 243 (380)
T d1ibja_ 180 PL-----ELGADIVMHSATKFIAGHSDVMAGVLA-VKGEK----LAKEVYFLQNSEGSGLAPFDCWLCLRGIKT------ 243 (380)
T ss_dssp GG-----GTTCSEEEEETTTTTTCSSCCCCEEEE-ECSHH----HHHHHHHHHHHTTCBCCHHHHHHHHHHHTT------
T ss_pred cc-----ccCCCEEEecccceeccccCccccccc-cchhh----HHHHHHhhccccCCcCCHHHHHHHHhcchh------
Confidence 11 124579999999999766666655543 44566 666666665555666777777777666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc---------------cccCcceeEecCCCHHHHHHHhhhccEEE--
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH---------------ITNQLGMFCFSGLTPYQVDRLAKEFHIYM-- 393 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~~ll~~~gI~i-- 393 (435)
+....++..++...+.+.|++.+.-..+.+ ....+|++.+.--+.+...++++.-.+.-
T Consensus 244 ----l~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a 319 (380)
T d1ibja_ 244 ----MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIA 319 (380)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEEC
T ss_pred ----hhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEe
Confidence 345667778888888899987753111111 01124444443224454555544433211
Q ss_pred -eCC-------------------------C------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 394 -TQD-------------------------G------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 394 -~pg-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
.-| | |+|++- |+.+.+++.|.++++.
T Consensus 320 ~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---E~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 320 VSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 377 (380)
T ss_dssp SCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred eccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 111 1 999854 8888899999988865
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=6.3e-15 Score=137.86 Aligned_cols=276 Identities=14% Similarity=0.087 Sum_probs=185.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 169 (435)
...|.+.+++.-.+. . ++.+++|..|+..+ +++++.+||+|++.+..|.+....+. ..|.++..
T Consensus 52 ~~~le~~la~LEgg~--------~--a~~~sSGMaAi~~~--l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~ 119 (384)
T d1cs1a_ 52 RDVVQRALAELEGGA--------G--AVLTNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 119 (384)
T ss_dssp HHHHHHHHHHHHTCS--------E--EEEESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHhCCC--------c--eEEecChHHHHHHH--Hhhcccccceecccccccchhhhhhhhhhccccccccc
Confidence 346666777665332 2 44799999999888 88889999999999999987755544 34544444
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccCCCCccc
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FASGDLDKD 248 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~~~~~~~ 248 (435)
+. . .|.+.+++++. +++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..|.. +...
T Consensus 120 ~d---~----~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~----- 181 (384)
T d1cs1a_ 120 VD---Q----GDEQALRAALA---EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN----- 181 (384)
T ss_dssp EC---T----TCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-----
T ss_pred cc---C----CCHHHHHhhcc---ccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccccc-----
Confidence 42 2 37889999998 78999999999999988775 55999999999999999999743 2222
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ + ..-+|++.|.+|.++-.|--+|-+++ +.+++ +...+..........+++...+.+..-|++
T Consensus 182 --Pl----~-~GaDiVvhS~TKyi~Ghsdv~~G~vv-~~~~~----~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T---- 245 (384)
T d1cs1a_ 182 --PL----A-LGADLVLHSCTKYLNGHSDVVAGVVI-AKDPD----VVTELAWWANNIGVTGGAFDSYLLLRGLRT---- 245 (384)
T ss_dssp --GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE-ESSHH----HHHHHHHHHHHHTCBCCHHHHHHHHHHHTT----
T ss_pred --cc----c-cCCCEEEEccccccccCCCccccccc-CCchh----hhhhhhhhhhhhhhccccccHHHHhhccch----
Confidence 11 1 23578999999999756665666553 54666 555555555555566777777766666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc---------------cccCcceeEec-CCCHHHHHHHhhhccEE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH---------------ITNQLGMFCFS-GLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~-~~~~~~~~~ll~~~gI~ 392 (435)
+....++..++...+.+.|+.++.-..+.+ ....+|++.+. .-+.+.+.+++++-.+.
T Consensus 246 ------L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~ 319 (384)
T d1cs1a_ 246 ------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLF 319 (384)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSS
T ss_pred ------hHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcc
Confidence 345556777888888889887652100000 11124544443 22455555555544332
Q ss_pred E---eCCC-------------------------------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 M---TQDG-------------------------------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i---~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
. .=|| |+|++- |+.+.+++.|.++++...
T Consensus 320 ~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---Ed~eDLi~Dl~~AL~aa~ 382 (384)
T d1cs1a_ 320 TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAAN 382 (384)
T ss_dssp EEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHT
T ss_pred eeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHHHhc
Confidence 2 1111 888854 888889999988887644
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.71 E-value=6.5e-16 Score=151.14 Aligned_cols=306 Identities=13% Similarity=0.093 Sum_probs=181.5
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCC-------CEEEEcCCCChhhHH
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE-------SHIYFPDPTWSNHHN 158 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g-------d~Vlv~~p~y~~~~~ 158 (435)
..|....+..+|.+.+++++ +. +.++ ++++|++|+.++ +..++++| +.++...+.+..+..
T Consensus 69 ~~y~~~~~~~~le~~~a~l~-g~-------~~~~--~~~sGt~A~~~a--~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~ 136 (465)
T d1ax4a_ 69 EAYAGSRNYYDLKDKAKELF-NY-------DYII--PAHQGRGAENIL--FPVLLKYKQKEGKAKNPVFISNFHFDTTAA 136 (465)
T ss_dssp CCSSSCHHHHHHHHHHHHHH-CC-------CEEE--EESSHHHHHHHH--HHHHHHHHHHTTCCSSCEEEESSCCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHH-CC-------CEEE--ECCCcHHHHHHH--HHHHHHHHHhcCCCCCeEEeccchhhhhHH
Confidence 44888888999999999997 44 2555 899999999998 44444333 334555555555666
Q ss_pred HHhhCCCCeeeeee--------cCCCCCCcChHhHHHHhhcCCC-CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcC
Q 013839 159 IWRDAQIPERTYHY--------YDPDSKSLDFAALMDDIKNAPD-SSFFLLHPSAHNPTG-VDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 159 ~~~~~g~~~~~v~~--------~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~ 228 (435)
.....|+.++.+.. .++..+.+|++++++++++..+ .+.++++..++|..| ..++.+++++|.++|++||
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 66777877655422 1234578999999999976433 456666666666664 5679999999999999999
Q ss_pred ceeeeeccCCCcc----------CCCCcccHHHHH-HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH
Q 013839 229 HFPFFDMAYQGFA----------SGDLDKDAQAIR-IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS 297 (435)
Q Consensus 229 ~~vi~Deay~~~~----------~~~~~~~~~~~~-~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~ 297 (435)
+++|+|+++.... ..+ .....+. .... ...++..|.+|.+ .+++.|+++ +++.........
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~d~~s~s~~k~~--~~~~~g~l~--~~~~~~~~~~~~ 288 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYK--YADALTMSAKKDP--LLNIGGLVA--IRDNEEIFTLAR 288 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGG--GCSEEEEETTSTT--CCSSCEEEE--ESSCHHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccc--cchhhhcccccc--ccceeEeecccCc--ccccceeEe--ecchHHHHHhhh
Confidence 9999999974211 000 0111111 1111 1234455666665 566678885 323221111111
Q ss_pred HHHHHhh--ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec
Q 013839 298 QIQQIAR--AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS 375 (435)
Q Consensus 298 ~l~~~~~--~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~ 375 (435)
....... ....+.......++...+.. ...+...++..++.+++.+.|++.+. ....+.++.+++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~e--------~~~~~~~~~~~~~~~~l~~~L~~~g~----~~v~~~~~~~~~~ 356 (465)
T d1ax4a_ 289 QRCVPMEGFVTYGGLAGRDMAAMVQGLEE--------GTEEEYLHYRIGQVKYLGDRLREAGI----PIQYPTGGHAVFV 356 (465)
T ss_dssp HHHHHHTCSTTTTTCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTTC----CBCSSCCSSEEEE
T ss_pred ccccccccCCCcchhhHHHHHHHhhhhHH--------hhhHHHHHHHHHHHHHHHHHHHhhcC----ccccCCCcceeee
Confidence 1111111 11222233322222222211 11123334445567788999998874 3555666655543
Q ss_pred CC-------------CHHHHHHHhhhccEEEeCCC---------------------cEEec--cCCCCcHHHHHHHHHHH
Q 013839 376 GL-------------TPYQVDRLAKEFHIYMTQDG---------------------RISMA--GVTTGNVNYLANAIHEV 419 (435)
Q Consensus 376 ~~-------------~~~~~~~ll~~~gI~i~pgg---------------------Ris~~--~~~~e~i~~~~~~l~~~ 419 (435)
+. ....+..++.+.||...+.+ |+++. ..|+|++++++++|.++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v 436 (465)
T d1ax4a_ 357 DCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 436 (465)
T ss_dssp ESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred ehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 21 12345667778899865321 77753 23789999999999998
Q ss_pred HHhh
Q 013839 420 TRSE 423 (435)
Q Consensus 420 l~~~ 423 (435)
+++.
T Consensus 437 ~~~~ 440 (465)
T d1ax4a_ 437 KEKF 440 (465)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.70 E-value=2.3e-14 Score=134.44 Aligned_cols=272 Identities=14% Similarity=0.072 Sum_probs=182.5
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v 170 (435)
..|.+.+++.-.+. . ++.+++|..|+..+ +++++.+||+|++....|.+....++ ..|.++..+
T Consensus 70 ~~LE~~la~LEgg~--------~--a~~~sSGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 137 (398)
T d1qgna_ 70 VVLEEKISALEGAE--------S--TLLMASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 137 (398)
T ss_dssp HHHHHHHHHHHTCS--------E--EEEESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhCCc--------e--EEEecCcchHHHHH--Hhhcccccccccccccccchhhhhhcccccccccccccc
Confidence 45667777765332 2 34799999999888 88889999999999999988876654 456666655
Q ss_pred eecCCCCCCcChHhHHH-HhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc-CCCCccc
Q 013839 171 HYYDPDSKSLDFAALMD-DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA-SGDLDKD 248 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~-~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~-~~~~~~~ 248 (435)
+. .+.+..++ .+. +++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..+..-. +.+
T Consensus 138 ~~-------~~~~~~~~~~~~---~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~P---- 200 (398)
T d1qgna_ 138 DP-------ADVGALELALNQ---KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKA---- 200 (398)
T ss_dssp CS-------SCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCT----
T ss_pred cc-------cchhhhhhhhcc---ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCCc----
Confidence 32 13444444 445 78999999999999987765 6699999999999999999974322 221
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
+ + ..-+|++.|.+|.++-.|--+|..+ +.+++ ++..++.........+++...+.+..-|++
T Consensus 201 ---l----~-~GaDiVihS~TKy~~Ghsdv~~G~v--~~~~~----~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---- 262 (398)
T d1qgna_ 201 ---L----A-LGADLVLHSATKFLGGHNDVLAGCI--SGPLK----LVSEIRNLHHILGGALNPNAAYLIIRGMKT---- 262 (398)
T ss_dssp ---T----T-TTCSEEEECTTTTTTCSSSCCCEEE--EECHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHGGG----
T ss_pred ---h----h-hCCCEEEEechhhcCcccceeehhh--cchhh----hhhhhhhhcccCCCcCCHHHHHHHHhcchH----
Confidence 1 1 2357899999999976666555554 33777 666666666655666777776666666643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc---------------cccCcceeEec-CCCHHHHHHHhhhccEE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH---------------ITNQLGMFCFS-GLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~-~~~~~~~~~ll~~~gI~ 392 (435)
+....++..++...+.+.|++++.-..+.+ ....||++.|. .-+.+.+.++++.-.+.
T Consensus 263 ------L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~ 336 (398)
T d1qgna_ 263 ------LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP 336 (398)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcc
Confidence 445667778888888899987753100000 11225555553 22455555554443332
Q ss_pred E-eC--C-------------------------C------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 393 M-TQ--D-------------------------G------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 393 i-~p--g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
. .+ | | |+|++- |+.+.+++.|.++++.
T Consensus 337 ~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl---Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 337 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDS 397 (398)
T ss_dssp EECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred eeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHhc
Confidence 2 11 1 1 899854 8888889999888864
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=2.4e-15 Score=143.19 Aligned_cols=279 Identities=14% Similarity=0.087 Sum_probs=174.6
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHh---CCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRF---HPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK 190 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~---~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~ 190 (435)
+.+. +|.|||++++++ +..++ .+||+|++..-.+... ....+..|.....+.. .+.+...+.+.+++.+.
T Consensus 58 ~~i~--~t~sgT~a~~~~--~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (382)
T d2bkwa1 58 QPFV--LAGSGTLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP-LKIGESVPLELITEKLS 132 (382)
T ss_dssp EEEE--EESCTTHHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC-SSTTSCCCHHHHHHHHH
T ss_pred eEEE--EeCcHHHHHHHH--HHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccc-cCCCCccchhHHHHHhh
Confidence 4566 899999999998 55553 6899999988766543 2345566766665543 24455678888888876
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
+ ++++++++++.+|.||...+.+ ++.+.|++ +++++++|.+ +.++..+.+ .+..+-++++.|.
T Consensus 133 ~--~~~~~v~~~~~~~~tg~~~~~~---~~~~~~~~~~~~~~~~vDa~-qs~g~~pid---------~~~~giD~~~~s~ 197 (382)
T d2bkwa1 133 Q--NSYGAVTVTHVDTSTAVLSDLK---AISQAIKQTSPETFFVVDAV-CSIGCEEFE---------FDEWGVDFALTAS 197 (382)
T ss_dssp H--SCCSEEEEESEETTTTEECCHH---HHHHHHHHHCTTSEEEEECT-TTTTTSCCC---------TTTTTCSEEEEES
T ss_pred h--ccchheeeeeccccccccccch---hhhhhccccccceeeeeecc-ccccccccc---------ccccCeeEEeecc
Confidence 4 4567888889999999998877 55555554 5699999999 444332221 1223457888999
Q ss_pred cccc-cccCCcccEEEEEecChhHHHHHHHHH-------------------HHH---hhccccCCChhHHHHHHHHhCCh
Q 013839 269 AKSM-GLYGHRVGCLSILCVDSKQAAAIRSQI-------------------QQI---ARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 269 SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l-------------------~~~---~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
.|.+ |.+| +|++++ +++..+...... ... .+.....++....+++..+|+.-
T Consensus 198 ~K~l~gP~G--~g~l~v---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~ 272 (382)
T d2bkwa1 198 QKAIGAPAG--LSISLC---SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI 272 (382)
T ss_dssp SSTTCCCSC--EEEEEE---CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred cccCcCCCc--hhhhhc---cHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH
Confidence 9988 6677 577764 777333221111 000 01223355555556666666421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEecCCCHHHHHHHhhhccEEEeCCC-----
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFSGLTPYQVDRLAKEFHIYMTQDG----- 397 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg----- 397 (435)
..+..+...++.++.++.+++.+........+...+. ..++..+...+.+.+..+|+++||.+.+|.
T Consensus 273 -----~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~~~ 347 (382)
T d2bkwa1 273 -----LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIG 347 (382)
T ss_dssp -----HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTG
T ss_pred -----HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChhhc
Confidence 1234566667777788888888865421101111111 113333334466677777789999999872
Q ss_pred ----cEE-eccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 398 ----RIS-MAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 ----Ris-~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
||+ ++.. ++++++++++.|..+.+.++
T Consensus 348 ~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 348 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 998 5432 56778888888876655554
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=1.5e-15 Score=142.26 Aligned_cols=315 Identities=16% Similarity=0.110 Sum_probs=185.5
Q ss_pred CCCcccchHHHHHHHHhcCCCCCCCCC--CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC
Q 013839 64 KGRPVVLQCVREAEAKIAGSEFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH 141 (435)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~ 141 (435)
+||...++.+.+++..-. ...+.+ ..-..+.++.+.+.+ +.. .+.+. ++.|||.+++.+ +..++.
T Consensus 6 PGP~~v~~~V~~am~~~~---~~hr~~~f~~i~~~~~~~l~~ll-~~~-----~~~i~--~~gsgT~a~e~~--~~nl~~ 72 (348)
T d1iuga_ 6 PGPVRLHPKALEALARPQ---LHHRTEAAREVFLKARGLLREAF-RTE-----GEVLI--LTGSGTLAMEAL--VKNLFA 72 (348)
T ss_dssp SSSCCCCHHHHHHHHSCC---CCTTSHHHHHHHHHHHHHHHHHH-TCS-----SEEEE--EESCHHHHHHHH--HHHHCC
T ss_pred CCCCCCCHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHh-CCC-----CCEEE--EeCchHHHHHHH--HHhccc
Confidence 344555556555544322 221222 112345555555555 332 12344 789999999998 888899
Q ss_pred CCCEEEEcCCCChh--hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 013839 142 PESHIYFPDPTWSN--HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWRE 219 (435)
Q Consensus 142 ~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~ 219 (435)
+||+|++..-++.+ +...++.+|.++..+.. +.+..++++++ .. ++++.+++++..+.||...+.+ +
T Consensus 73 ~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~---~~---~~~~~v~~~h~eTstG~~~~i~---~ 141 (348)
T d1iuga_ 73 PGERVLVPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDV---AK---EGYAGLLLVHSETSTGALADLP---A 141 (348)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTS---CC---SSCSEEEEESEETTTTEECCHH---H
T ss_pred ccccceeecchHHHHHHHHHHHhcCcccccccc--cCCCccccccc---cc---cCCCeeEEEecchhhhhhccHH---H
Confidence 99999888776433 34566778877776665 33334454442 12 5667888888899999988866 7
Q ss_pred HHHHHHhc--CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHH-
Q 013839 220 ISYQFKVK--GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAI- 295 (435)
Q Consensus 220 i~~~~~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~- 295 (435)
|.++|++| +.++++|.+ +.+...+.+. +...-++++.|..|.+ |.|| +|++++ +++.++++
T Consensus 142 i~~~~~~~~~~~l~~vDav-ss~g~~~i~~---------d~~~iD~~~~~sqK~l~gppG--~~~v~~---s~~~le~~~ 206 (348)
T d1iuga_ 142 LARAFKEKNPEGLVGADMV-TSLLVGEVAL---------EAMGVDAAASGSQKGLMCPPG--LGFVAL---SPRALERLK 206 (348)
T ss_dssp HHHHHHHHCTTCEEEEECT-TTBTTBCCCS---------GGGTCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHTCC
T ss_pred HHHHHHhhhccceeechhh-hccccccccc---------ccccCCEEEeccccceecCCc--eeeeee---chHHHhhhc
Confidence 77888776 478888988 4443322221 2223567788899988 7777 577764 77643321
Q ss_pred --------HHHHHHHh-hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 296 --------RSQIQQIA-RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 296 --------~~~l~~~~-~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
...+.... .....+++....+++..+|+... +...+..++.+..++.+++.++..|....-+...
T Consensus 207 ~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~------~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s 280 (348)
T d1iuga_ 207 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL------PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFS 280 (348)
T ss_dssp CCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG------GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBC
T ss_pred ccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHhhhhhhhhhccChhhcC
Confidence 11122111 13345666667777777764211 1122233333434455555556665421001111
Q ss_pred cCcceeEec-CCCHHHHHHHhhhccEEEeCC-----C---cEEe-ccCCCCcHHHHHHHHHHHHHhh
Q 013839 367 NQLGMFCFS-GLTPYQVDRLAKEFHIYMTQD-----G---RISM-AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 367 ~~~g~~~~~-~~~~~~~~~ll~~~gI~i~pg-----g---Ris~-~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+.-..+... +++.+.+...|+++||.+.+| | ||+. +..+.++++.++++|+++++++
T Consensus 281 ~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 281 PAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp TTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111112222 677777766678899999887 2 8874 3457889999999999998764
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=5.4e-15 Score=139.48 Aligned_cols=295 Identities=15% Similarity=0.109 Sum_probs=177.3
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~ 169 (435)
.-..+.|+.+++++... +++....++.|||++++.+ +..+..+++.+++....+... .......+.....
T Consensus 33 ~~~~~~r~~l~~l~~~~------~~~~~i~~t~s~T~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (361)
T d1m32a_ 33 GVVEQIRQQLTALATAS------EGYTSVLLQGSGSYAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 104 (361)
T ss_dssp TTHHHHHHHHHHHHCSS------SSEEEEEEESCHHHHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhCCC------CCCEEEEECCCHHHHHHHH--HHHhhhhccccceeeehhhhhhHHHHhhhhhccccc
Confidence 34578999999988433 2343333778889999988 777778888887776654332 2334455555555
Q ss_pred eeecCCCCCCcCh--HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 170 YHYYDPDSKSLDF--AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 170 v~~~~~~~~~~d~--e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
+.. ......+. +....... ++++++.+++.+|-||...+.+ +|.++|++||+++++|.++.... .+.+
T Consensus 105 ~~~--~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tG~~~~i~---~i~~~~~~~g~~~~vDa~qs~G~-~~~d- 174 (361)
T d1m32a_ 105 YDC--GEVARPDVQAIDAILNAD---PTISHIAMVHSETTTGMLNPID---EVGALAHRYGKTYIVDAMSSFGG-IPMD- 174 (361)
T ss_dssp EEC--CTTSCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHH---HHHHHHHHHTCEEEEECTTTTTT-SCCC-
T ss_pred ccc--cccCCccchhhHHHHHhc---cCccceEEEeeecccccchhhh---hhhhhhcccceeeEeecccccCc-cccc-
Confidence 443 22222222 23333333 6788999999999999988754 88999999999999999954332 2221
Q ss_pred cHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHH--------------HHHHHHHHhhccccCCCh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAA--------------IRSQIQQIARAMYGSPPV 312 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~ 312 (435)
.+..+.++++.|..|.+ |.+| +|++.+ +++..+. ..............+++.
T Consensus 175 --------~~~~~~D~~~~s~~K~l~gp~G--~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 241 (361)
T d1m32a_ 175 --------IAALHIDYLISSANKCIQGVPG--FAFVIA---REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPT 241 (361)
T ss_dssp --------TTTTTCSEEEEESSSTTCCCSS--EEEEEE---EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCH
T ss_pred --------ccccccceEEeeecccccCCCC--ceEEEe---chhhhhhhccccccccccchhhhccccccccccCCCCCc
Confidence 12235678888999987 4456 566653 4441110 011111112223345666
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec-----CCCHHHHHHHhh
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS-----GLTPYQVDRLAK 387 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~ll~ 387 (435)
....++...+.... + ........++.+...+.+.+.++..+............+...+. +.+...+...|.
T Consensus 242 ~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~ 317 (361)
T d1m32a_ 242 HTVLAFAQALKELA--K--EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLK 317 (361)
T ss_dssp HHHHHHHHHHHHHH--H--HTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH--H--hcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHH
Confidence 66555555553211 0 11244555667777788888888877421111101111222221 235555655567
Q ss_pred hccEEEeCCC-------cEEe-ccCCCCcHHHHHHHHHHHHH
Q 013839 388 EFHIYMTQDG-------RISM-AGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 388 ~~gI~i~pgg-------Ris~-~~~~~e~i~~~~~~l~~~l~ 421 (435)
++||.+.+|+ |||. +..+++|+++++++|+++|.
T Consensus 318 ~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~ 359 (361)
T d1m32a_ 318 EQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY 359 (361)
T ss_dssp HTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred HCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 8999998763 9984 34488999999999998864
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.68 E-value=3.3e-14 Score=130.89 Aligned_cols=272 Identities=14% Similarity=0.066 Sum_probs=178.2
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeeeee
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERTYH 171 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~ 171 (435)
.|.+.+++.-.+. . ++.+++|..|+..+ +++++++||+|+++.+.|.+.... ++..|.++.+++
T Consensus 2 aLE~~la~Leg~~--------~--a~~~sSGMaAi~~~--l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d 69 (331)
T d1pffa_ 2 ALEGKIAKLEHAE--------A--CAATASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTCS--------E--EEEESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCC--------e--EEEECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence 3666777776333 2 34789999998887 888999999999999999876554 457788877765
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcCceeeeeccCCCccCCCCcccHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQ-FKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~-~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
. -|.+.++++++ ++++++++.+|.||+..+.+.+ +++++ ++++++++|+|..+....
T Consensus 70 ~-------~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d~~---~~~~~~a~~~~~~~vVDnT~atp~--------- 127 (331)
T d1pffa_ 70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVIDIE---DAVKQARKQKDILVIVDNTFASPI--------- 127 (331)
T ss_dssp T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHTTSSSCEEEEECTTTHHH---------
T ss_pred c-------cchhhHhhhcc---cccceeeeecccccccccccch---hhhhhhhcccCceEEeeccccccc---------
Confidence 3 27788999887 7899999999999998887655 66666 467899999999864221
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCChhhH
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
..-+-...-+|++.|.+|.++-.|--+|..++ . +++ .....+.. .......+++...+.+..-+
T Consensus 128 --~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~-~-~~~----~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl------ 193 (331)
T d1pffa_ 128 --LTNPLDLGVDIVVHSATKYINGHTDVVAGLVC-S-RAD----IIAKVKSQGIKDITGAIISPHDAWLITRGT------ 193 (331)
T ss_dssp --HCCGGGGTCSEEEEETTTTTSSSSSCCCEEEE-E-CHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHH------
T ss_pred --cccccccCCCEEEecchhhcCCCCcccccccc-c-ccc----chhhhhhhhhhhccCCCCCHHHHHHHHHHH------
Confidence 11111123478999999999656666665542 4 555 44333321 12223445555444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc---------------cccCcceeEecCCCHHHHHHHhhhccEEE
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH---------------ITNQLGMFCFSGLTPYQVDRLAKEFHIYM 393 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~~ll~~~gI~i 393 (435)
+-+....++..++...+.+.|++++.-..+.+ ....++++.+.--+.+.+.++++.-.+.-
T Consensus 194 ----~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~ 269 (331)
T d1pffa_ 194 ----LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVS 269 (331)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSE
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcce
Confidence 44566778888888999999998764211111 11235555444224455555555544322
Q ss_pred ---eCCC-------------------------------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 394 ---TQDG-------------------------------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 394 ---~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
.-|| |+|++- |+.+.+++.|.++++.
T Consensus 270 ~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl---E~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 270 LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC---ENVQDIIDDLKQALDL 329 (331)
T ss_dssp ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHT
T ss_pred ecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee---CCHHHHHHHHHHHHHH
Confidence 1121 899854 8888888888888764
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.67 E-value=3.2e-15 Score=144.78 Aligned_cols=273 Identities=11% Similarity=0.033 Sum_probs=167.3
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee-cCCCCCCcChHhHHHHhhcC--CCCcEEE
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY-YDPDSKSLDFAALMDDIKNA--PDSSFFL 199 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~e~l~~~i~~~--~~~~~~v 199 (435)
..|+++++.+++.......++++|+++.-.++.+...+...|++++.++. .+.+.+.+|+++|++++.+. ...+.++
T Consensus 136 ~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v 215 (434)
T d2z67a1 136 PISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV 215 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEE
Confidence 34444454444222223447899999999999888889999999887753 23445789999999999753 2357788
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++..|++++|..-+ +++|.++|++||+++++|++|...... .......+....-++++.|.+|.++.+ ...
T Consensus 216 ~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~-----~~~~~~~~~~~~~D~~~~s~hK~l~~~-~g~ 286 (434)
T d2z67a1 216 LSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLLTP-IGG 286 (434)
T ss_dssp EEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHCCC-SSC
T ss_pred EeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhh-----ccccccccccCCcceEEEcCccccccC-CCc
Confidence 88899999998754 669999999999999999998543311 111111122234567788999988743 334
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
|++. ..+++ +++++...........+.....+....+.. +..+...++..++++++.+.|+++...
T Consensus 287 ~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~--------~g~~~~~~~~~~~a~~l~~~L~~l~~~ 352 (434)
T d2z67a1 287 GLVY--STDAE----FIKEISLSYPGRASATPVVNTLVSLLSMGS--------KNYLELVKNQKNSKKLLDELLNDLSKK 352 (434)
T ss_dssp EEEE--ESCHH----HHHHHHTTSCSCBCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--cCcHH----HHHHHHhhcccccccchHHHHHHHHHHHHH--------hcchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 4553 45776 666665543322233333333333333322 334445555666666666666654110
Q ss_pred CCcccccc--CcceeEecCCCHHHHHHHhhhccEEEeCC-------C------------cEEecc-CCCCcHHHHHHHHH
Q 013839 360 LNWEHITN--QLGMFCFSGLTPYQVDRLAKEFHIYMTQD-------G------------RISMAG-VTTGNVNYLANAIH 417 (435)
Q Consensus 360 ~~~~~~~~--~~g~~~~~~~~~~~~~~ll~~~gI~i~pg-------g------------Ris~~~-~~~e~i~~~~~~l~ 417 (435)
.+...... ...++...+.+...+...|.+.||..... | |++.+- .|+|+|++++++|+
T Consensus 353 ~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~ 432 (434)
T d2z67a1 353 TGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLE 432 (434)
T ss_dssp SSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHh
Confidence 01223222 23334444667776655567789864311 1 555432 38899999999987
Q ss_pred H
Q 013839 418 E 418 (435)
Q Consensus 418 ~ 418 (435)
+
T Consensus 433 k 433 (434)
T d2z67a1 433 K 433 (434)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.67 E-value=1.2e-15 Score=146.46 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=167.8
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHH----HHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAE----FQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~----~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 170 (435)
.+.|+.+++++. .. ++++. ++.++|+++..+.. +.....+|+.|++.+-.+..........+.++..+
T Consensus 73 e~~R~~iA~llg-a~-----~~ei~--~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 144 (404)
T d1qz9a_ 73 ERLGNRLATLIG-AR-----DGEVV--VTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQ 144 (404)
T ss_dssp HHHHHHHHTTTT-CC-----TTSEE--ECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhC-CC-----CCcEE--EecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeee
Confidence 478888988884 33 56888 89999999877642 12234688888888866655443333333333333
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. ..+...+++.++++++ ++|++|++++.+|.||..++.+ +|+++|+++++++++|.+.. ++..+. +
T Consensus 145 ~~--~~~~~~~~~~~~~~i~---~~T~lV~i~~v~~~tG~~~pv~---~i~~~~~~~~~~~~vD~~q~-~g~~~~--~-- 211 (404)
T d1qz9a_ 145 GY--TLRLVDSPEELPQAID---QDTAVVMLTHVNYKTGYMHDMQ---ALTALSHECGALAIWDLAHS-AGAVPV--D-- 211 (404)
T ss_dssp SC--EEEEESSGGGHHHHCS---TTEEEEEEESBCTTTCBBCCHH---HHHHHHHHHTCEEEEECTTT-TTTSCC--C--
T ss_pred ce--eccccccchhHHHhcC---CCceEEEEecccccccceecHH---HHhccccccccceeEEeecc-cccccc--c--
Confidence 32 1123567889999998 8899999999999999998755 89999999999999999843 332222 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-----------------------hccc
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-----------------------RAMY 307 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~ 307 (435)
+.. .+.+++..|..|.+..+....|++.. +++ ..+.+.... ....
T Consensus 212 -~~~----~~~d~~~~s~~K~~~~~~g~~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (404)
T d1qz9a_ 212 -LHQ----AGADYAIGCTYKYLNGGPGSQAFVWV---SPQ----LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLC 279 (404)
T ss_dssp -HHH----HTCSEEEECSSSTTCCCTTCCCEEEE---CTT----TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCC
T ss_pred -ccc----ccceEEEEechhhcccCCceEEEEEe---chh----hhhhCCccccccCCccccccccccccccccchhhhh
Confidence 111 13456777888876433333566653 544 322221000 0111
Q ss_pred cCCChhHHHHHHH---HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-----CcceeEecCCCH
Q 013839 308 GSPPVHGILLVAT---ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-----QLGMFCFSGLTP 379 (435)
Q Consensus 308 ~~~~~~~q~~~~~---~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~g~~~~~~~~~ 379 (435)
..++......+.. .+.... .+..++...........+.+.+.... ++.++.| .++...+...+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~~~~---~~~i~~p~~~~~r~~~vsf~~~~~ 351 (404)
T d1qz9a_ 280 GTQPITSLAMVECGLDVFAQTD-----MASLRRKSLALTDLFIELVEQRCAAH---ELTLVTPREHAKRGSHVSFEHPEG 351 (404)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHHHHHHHHTTS---CCEECSCSSGGGBCSEEEEECTTH
T ss_pred hhccchhHHHHHHHHHHHHHhh-----HHHHHHHHHHhHHHHHHHHHhhccCC---CEEEECCCCccceeeEEEEecCCH
Confidence 1222222222222 222211 02222222222222222333333221 2444332 245544544466
Q ss_pred HHHHHHhhhccEEEe--CCC--cEEec--cCCCCcHHHHHHHHHHHHHhh
Q 013839 380 YQVDRLAKEFHIYMT--QDG--RISMA--GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 380 ~~~~~ll~~~gI~i~--pgg--Ris~~--~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+.+.+.|.++||.+. .+| |||++ .-|.+|++++++.|++++++.
T Consensus 352 ~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 352 YAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp HHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 666555678999763 234 99985 237899999999999999763
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.67 E-value=1.8e-15 Score=140.03 Aligned_cols=321 Identities=17% Similarity=0.240 Sum_probs=210.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCC------Ccc---cHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESIS------ASV---STKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~------~~g---~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|-..+ -..++.++++......+ ...+|+. ..- +..+....++.+++....
T Consensus 23 ~~~l~LiaSE-------N~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~a-------- 87 (405)
T d1kl1a_ 23 HAKIELIASE-------NFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA-------- 87 (405)
T ss_dssp HHSEECCTTC-------CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEE--------
T ss_pred HcCceEeccC-------CcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcc--------
Confidence 4678887776 23456666666655422 1222322 221 223333444566676432
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-----HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-----WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
-+...+|+.|...+ +.++++|||+|+..++..+++... ......+.+.|++ +.+++.+|.+++++.+.+ .
T Consensus 88 nVqp~SGs~An~av--~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~-d~~~~~ID~d~l~~~a~~--~ 162 (405)
T d1kl1a_ 88 NVQPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV-DPETHVIDYDDVREKARL--H 162 (405)
T ss_dssp ECCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHH--H
T ss_pred eeeccCchHHHHHH--HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEecc-chhcccccHHHHHHHHHh--h
Confidence 33578999998888 899999999999999777665432 1122346677777 567789999999999886 4
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++|++....+|--. +++++.++|++.|++++.|.++ .++..++..++ ++ ..-.++.+|..|++
T Consensus 163 kPklIi~G~S~y~r~~-----d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~--P~------~~aDvvt~tThKtl- 228 (405)
T d1kl1a_ 163 RPKLIVAAASAYPRII-----DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN--PV------PYAHFVTTTTHKTL- 228 (405)
T ss_dssp CCSEEEECCSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--ST------TTCSEEEEESSSTT-
T ss_pred CcceEEeccccccccc-----ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCC--hh------hhhhheeccccccc-
Confidence 5788888766666532 4779999999999999999995 33433332111 11 12367788999997
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILL-VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
+|-|.|.+. + +.+ +.+++.+...+...+.+.....+ .+.++.+. +....+.+.++..++++.|.+.
T Consensus 229 -rGPrgg~I~--~-~~~----~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea-----~~~~fk~Ya~qvv~NAkaLa~~ 295 (405)
T d1kl1a_ 229 -RGPRGGMIL--C-QEQ----FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA-----LQDDFKAYAKRVVDNAKRLASA 295 (405)
T ss_dssp -CCCSCEEEE--E-CHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH-----HSHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCceEE--e-cch----hHHHHHhhhCcccccCcchhHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHH
Confidence 688888875 5 777 77777776665444444333333 33333321 2244567778888889999999
Q ss_pred HHhhCCCCCcccccc--CcceeEec-----CCCHHHHHHHhhhccEEEe----CC---------C-cEEec-----cCCC
Q 013839 353 LEKLGSSLNWEHITN--QLGMFCFS-----GLTPYQVDRLAKEFHIYMT----QD---------G-RISMA-----GVTT 406 (435)
Q Consensus 353 l~~~~~~~~~~~~~~--~~g~~~~~-----~~~~~~~~~ll~~~gI~i~----pg---------g-Ris~~-----~~~~ 406 (435)
|.+.|+ ++... ..- .+++ +++...++++|++.||.+- |+ | ||+.. ++.+
T Consensus 296 L~~~G~----~vv~ggTd~H-~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e 370 (405)
T d1kl1a_ 296 LQNEGF----TLVSGGTDNH-LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL 370 (405)
T ss_dssp HHHTTC----EEGGGSCSSS-EEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCH
T ss_pred HhcCCc----eeecCCCccc-eeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCH
Confidence 999885 44432 222 3333 4577788888899999886 22 3 88743 3578
Q ss_pred CcHHHHHHHHHHHHHh
Q 013839 407 GNVNYLANAIHEVTRS 422 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~ 422 (435)
+++.++.+.|.++++.
T Consensus 371 ~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 371 EEMDEIAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988854
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.67 E-value=1.4e-14 Score=137.82 Aligned_cols=173 Identities=14% Similarity=0.051 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYH 171 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 171 (435)
-...+.+.+++++... ..+ .+++||.|+.++ +.++ +.+||+|++|..+|......+...|++++.++
T Consensus 35 ~v~~fE~~~a~~~g~~--------~~v--~~~SGt~Al~la--l~~l~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d 102 (384)
T d1b9ha_ 35 EVNSFEREFAAHHGAA--------HAL--AVTNGTHALELA--LQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVD 102 (384)
T ss_dssp HHHHHHHHHHHHTTCS--------EEE--EESCHHHHHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCcC--------eEE--EeCCHHHHHHHH--HHHcCCCCCCEEEEecccccccccccccccccccccc
Confidence 3578999999988333 333 799999999998 6654 68999999999999999999999999999998
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. +++++.+|++.+++.+. ++++++++ .+..|.. .++++|.++|+++++++|+|.+......... . .
T Consensus 103 ~-~~~~~~~d~~~~~~~i~---~~tk~i~~---~~~~g~~---~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g-~---~ 168 (384)
T d1b9ha_ 103 V-DAATYNLDPEAVAAAVT---PRTKVIMP---VHMAGLM---ADMDALAKISADTGVPLLQDAAHAHGARWQG-K---R 168 (384)
T ss_dssp B-CTTTCCBCHHHHHHHCC---TTEEEECC---BCGGGCC---CCHHHHHHHHHHHTCCBCEECTTCTTCEETT-E---E
T ss_pred c-cccccccchhhhccccc---cccccccc---ccccccc---cccccchhhhhhhhhhhhhhhceecccccCC-E---e
Confidence 8 56778999999999987 78888865 3445543 4577999999999999999999654332110 0 1
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
....++-.++..+.+|.++ .|. .|.++ +.+++ +.+.++.+
T Consensus 169 ---~g~~g~~~~~Sf~~~K~i~-~g~-GG~i~--t~~~~----~~~~~~~~ 208 (384)
T d1b9ha_ 169 ---VGELDSIATFSFQNGKLMT-AGE-GGAVV--FPDGE----TEKYETAF 208 (384)
T ss_dssp ---GGGSSSCEEEECCTTSSSC-SSS-CEEEE--ECTTC----HHHHHHHH
T ss_pred ---cCcccccceeccccccccc-ccc-cchhh--hhhHH----HHHHHHHH
Confidence 1122344555556689986 343 35553 55677 55555443
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=4.1e-15 Score=144.51 Aligned_cols=281 Identities=12% Similarity=0.051 Sum_probs=167.9
Q ss_pred eEecCCchhHHHHHHHHHH---HhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcC-CC
Q 013839 120 GVQALSGTGACRLFAEFQR---RFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNA-PD 194 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~-~~ 194 (435)
+.++.||+++...+. +++ ...+++.|+++...+......+...|++++.|+.. +.+++.+|+++|++++.+. .+
T Consensus 115 ~~~~~~~t~~~~~~~-l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~ 193 (445)
T d3bc8a1 115 CFVVPMATGMSLTLC-FLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE 193 (445)
T ss_dssp EEEESSCHHHHHHHH-HHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG
T ss_pred ccccccchHHHHHHH-HHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhcccc
Confidence 346788876544432 222 23467999999999999999999999998887532 3456899999999999753 24
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~ 274 (435)
++.+++++.|+|++|..-+ +++|+++|++||+++++|++|...... .........+.++-.++..|.+|.++.
T Consensus 194 ~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~----~~~~~~~~~~~~~vd~~~~s~hK~~~~ 266 (445)
T d3bc8a1 194 HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSK----CMHLIQQGARVGRIDAFVQSLDKNFMV 266 (445)
T ss_dssp GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH----HHHHHHHHHHHSCCCEEEEEHHHHHSC
T ss_pred CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhh----ccccchhccCcCCcceEEecCcccccc
Confidence 5788999999999998754 669999999999999999997643311 011111112233445778899998774
Q ss_pred cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 275 YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 275 ~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
|. ..|+++ ..+.+ +.+.+...........+.+.+.+....+.. +......+...++.+++.+.|+
T Consensus 267 p~-g~~~l~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~L~ 331 (445)
T d3bc8a1 267 PV-GGAIIA--GFNEP----FIQDISKMYPGRASASPSLDVLITLLSLGC--------SGYRKLLKERKEMFVYLSTQLK 331 (445)
T ss_dssp CS-SCEEEE--ESCHH----HHHHHHHHSCSCBCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCceee--eCChH----HHHHHHHHHhhcccCcchHHHHHHHHHHhh--------hcchhhHHHHHHHHHHHHHHHH
Confidence 43 345554 44666 555555433222222333333333222221 2233444444445555555554
Q ss_pred hh----CCCCCccccccCcceeEec---C------CCHHHHHHHhhhccEEEeC----C-------------C-------
Q 013839 355 KL----GSSLNWEHITNQLGMFCFS---G------LTPYQVDRLAKEFHIYMTQ----D-------------G------- 397 (435)
Q Consensus 355 ~~----~~~~~~~~~~~~~g~~~~~---~------~~~~~~~~ll~~~gI~i~p----g-------------g------- 397 (435)
++ +. .....+......+. . .+...+...|.+.||.... + |
T Consensus 332 ~l~~~~~~---~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~ 408 (445)
T d3bc8a1 332 KLAEAHNE---RLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYP 408 (445)
T ss_dssp HHHHHTTC---CBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCS
T ss_pred HHHhhcCc---eeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCC
Confidence 43 32 11111222222222 1 1233343334567764221 1 1
Q ss_pred ----cEEec-cCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 398 ----RISMA-GVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 398 ----Ris~~-~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
|++.+ ..+++|+++++++|.+++++.+++
T Consensus 409 ~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 409 CAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 55543 237899999999999999987754
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.1e-14 Score=133.69 Aligned_cols=274 Identities=11% Similarity=0.094 Sum_probs=180.4
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v 170 (435)
..|.+.+++.-.+. . ++.+++|..|+..+ +++++.+||+|++....|.+....++ ..|.++..+
T Consensus 61 ~~le~~la~LEg~~--------~--a~~~~SGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~ 128 (391)
T d1cl1a_ 61 FSLQQAMCELEGGA--------G--CVLFPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWF 128 (391)
T ss_dssp HHHHHHHHHHHTCS--------E--EEEESSHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhCCc--------c--EEEeccccceeeeh--hhcccCCCCeEEEecccccchhhhhhhcccccccccccc
Confidence 35555565554222 2 34799999999888 88899999999999999988776654 456666655
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCCCccCCCCccc
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~~~~~~~~~~~ 248 (435)
+. .|.+.++++++ ++++++++.+|.||+..+.+. ++++++|++ +|+++|+|+.+.....-.
T Consensus 129 d~-------~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~Di---~~i~~~a~~~~~g~~~vVDnT~atP~~~~---- 191 (391)
T d1cl1a_ 129 DP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHDV---PAIVAAVRSVVPDAIIMIDNTWAAGVLFK---- 191 (391)
T ss_dssp CT-------TCGGGGGGTCC---TTEEEEEEESSCTTTCCCCCH---HHHHHHHHHHCTTCEEEEECTTTTTTSSC----
T ss_pred cC-------ccccccccccc---cccceeeecccCccccccccc---HHHHHHHHhccCCcEEEEeccccchhhhc----
Confidence 32 26778888777 789999999999999888765 477777765 599999999975433211
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
++ + ..-+|++.|.+|.++-.|--+|-+++ . +++ +...+..........+++...+.+..-|++
T Consensus 192 --Pl----~-~GaDivvhS~TKy~~GhsdvlgG~vv-~-~~~----~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T---- 254 (391)
T d1cl1a_ 192 --AL----D-FGIDVSIQAATKYLVGHSDAMIGTAV-C-NAR----CWEQLRENAYLMGQMVDADTAYITSRGLRT---- 254 (391)
T ss_dssp --GG----G-GTCSEEEEETTTTTTCSSSCCCEEEE-E-CTT----THHHHHHHHHHTTCCCCHHHHHHHHHHHTT----
T ss_pred --cc----c-cccceEEeecchhcccccccccccee-c-ccc----ccccchhhhhcccccCCchhhhhhhccchh----
Confidence 11 1 13478899999999755555555542 4 666 555555555555566677766666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc---------------cccCcceeEec---CCCHHHHHHHhhhcc
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH---------------ITNQLGMFCFS---GLTPYQVDRLAKEFH 390 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~---~~~~~~~~~ll~~~g 390 (435)
+....++..++...+.+.|++++.-..+.+ ....+|++.+. +.+.+.+.+.++.-.
T Consensus 255 ------L~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~ 328 (391)
T d1cl1a_ 255 ------LGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFS 328 (391)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCC
Confidence 345566777888888899988753110100 11224544433 235555555554333
Q ss_pred EEE---eCC-----------------------C------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 391 IYM---TQD-----------------------G------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 391 I~i---~pg-----------------------g------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+.. .-| | |+|++- |+.+.+++.|.++++++
T Consensus 329 l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl---Ed~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 329 LFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL---EDVDDLIADLDAGFARI 390 (391)
T ss_dssp SCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS---SCHHHHHHHHHHHHHHT
T ss_pred cceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHhh
Confidence 222 111 1 999854 88888998888888653
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.64 E-value=2.5e-14 Score=137.66 Aligned_cols=336 Identities=13% Similarity=0.072 Sum_probs=190.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.-...-|. -.+++++++..++... .....+. ...+.+++.+...... .+.+. ++++|
T Consensus 49 ~~G~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~-~~~~~~~----~~~~~la~~~~~~~~~---~~~v~--f~~sG 117 (427)
T d2gsaa_ 49 VDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKG-TSFGAPC----ALENVLAEMVNDAVPS---IEMVR--FVNSG 117 (427)
T ss_dssp TTSCEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTC-SCCSSCC----HHHHHHHHHHHHHSTT---CSEEE--EESSH
T ss_pred CCCCEEEEechhHHHHhccC-CcHHHHHHHHHHHHhc-Cccccch----hHHHHHHHHHHhhCCc---ccccc--ccCCc
Confidence 46789999987752122222 2334445555555443 2222222 2333444444211111 23555 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh--------hCCCCee---eeeecCC--CCCCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR--------DAQIPER---TYHYYDP--DSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--------~~g~~~~---~v~~~~~--~~~~~d~e~l~~~i~~~~ 193 (435)
++|++.+..+........+|+....+|.+...... ..+.... ..+.... .....|++.+++.+.+.+
T Consensus 118 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 197 (427)
T d2gsaa_ 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENP 197 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCC
Confidence 99999997666555455789988888876532211 1111100 0000000 001248899999998776
Q ss_pred CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
.+..++++..-..-.|.. .+++.+++|.++|++||+++|.||+..++..+. .+....+ +....++ .++|.+
T Consensus 198 ~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~----~~~~~~~-gi~PDi~---~~gK~l 269 (427)
T d2gsaa_ 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAY----GGVQEKF-GVTPDLT---TLGKII 269 (427)
T ss_dssp TTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT----TCHHHHT-TCCCSEE---EECGGG
T ss_pred CCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecc----cchHHhc-CCCHHHH---hhhhcc
Confidence 677777776544445654 477789999999999999999999988775432 2233333 2222333 368888
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhh---ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR---AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
| .|..+|.+++ .++ +.+.+..... ..+.+.++++..++.+.|+.-. + +...++++++.+++
T Consensus 270 g-gG~p~~a~~~---~~~----i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~------~--~~l~~~~~~~g~~l 333 (427)
T d2gsaa_ 270 G-GGLPVGAYGG---KRE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR------Q--PGTYEYLDQITKRL 333 (427)
T ss_dssp G-TTSCCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHHHHHH
T ss_pred C-CCcceeeeee---hHH----HHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhh------h--hhHHhhhhHHHHHH
Confidence 7 7888888754 777 7665544221 2455677777777666653210 0 11223333333334
Q ss_pred HHHH----HhhCCCCCccccccCcceeEec--C-C----------CHH---HH-HHHhhhccEEEeCCC--c--EEeccC
Q 013839 350 RQNL----EKLGSSLNWEHITNQLGMFCFS--G-L----------TPY---QV-DRLAKEFHIYMTQDG--R--ISMAGV 404 (435)
Q Consensus 350 ~~~l----~~~~~~~~~~~~~~~~g~~~~~--~-~----------~~~---~~-~~ll~~~gI~i~pgg--R--is~~~~ 404 (435)
.+.| ++.+.+ +. ....++++.+. . . +.+ .+ ..++ ++||.+.|++ + +++ ..
T Consensus 334 ~~~L~~l~~~~~~~--~~-v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll-~~Gv~l~p~~~~~~~~~l-~~ 408 (427)
T d2gsaa_ 334 SDGLLAIAQETGHA--AC-GGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQFEAGFTSL-AH 408 (427)
T ss_dssp HHHHHHHHHHTTCC--CE-EEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTTSCEECCT-TC
T ss_pred HHHHHHHHhhcCCC--cE-EcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHH-HCCEEECCCCCcceeCCC-CC
Confidence 3333 444432 12 22334443321 1 1 212 23 3444 6899999986 3 233 24
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 013839 405 TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~ 422 (435)
|+++|++++++|++++++
T Consensus 409 Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 409 TEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999999865
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.1e-14 Score=135.42 Aligned_cols=324 Identities=15% Similarity=0.177 Sum_probs=205.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCC------CCCCc---ccHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLE------SISAS---VSTKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------Y~~~~---g~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|-..+ | ..++.++++......+ ...+ |...+ -+..|....++.+++.... +|
T Consensus 26 ~~~i~LiaSE----N---~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a-----nV- 92 (416)
T d1dfoa_ 26 EEHIELIASE----N---YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA-----NV- 92 (416)
T ss_dssp HHSEECCTTC----C---CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-----EC-
T ss_pred HcCceEecCc----c---cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc-----ee-
Confidence 5778887777 2 3456666666655422 1222 32221 1233344445556666432 33
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-----hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-----DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
...+|+.|+..+ +.++++|||+|+..++..+++...-. ....+.+.+++ ++ ++.+|.+++++...+ .
T Consensus 93 --qp~SGs~AN~av--~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~-d~-~~~IDyd~l~~~a~~--~ 164 (416)
T d1dfoa_ 93 --QPHSGSQANFAV--YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGI-DA-TGHIDYADLEKQAKE--H 164 (416)
T ss_dssp --CCSSHHHHHHHH--HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECB-CS-SSSBCHHHHHHHHHH--H
T ss_pred --ecccCccHHHHH--HHHhcCCCCeeeeccccccccccccccccccCceEEEEeccc-CC-ccCccHHHHHHHHHH--h
Confidence 478999998888 89999999999999988877643211 22235666666 33 457999999999875 4
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++|+.....+|- .-+++++.++|++.|++++.|.++ .++.-++.-++ ++ ..-.++.+|.+|++
T Consensus 165 kPklIi~G~S~y~r-----~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~s--P~------~~aDvvt~tThKtl- 230 (416)
T d1dfoa_ 165 KPKMIIGGFSAYSG-----VVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPN--PV------PHAHVVTTTTHKTL- 230 (416)
T ss_dssp CCSEEEEECSSCCS-----CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC--CT------TTSSEEEEESSSTT-
T ss_pred ccceEEeccccccc-----ccCHHHHHHHHHhcCceEEcchhhhhcceeccccCC--cc------cccceeeeehhhcc-
Confidence 56788876555543 224779999999999999999995 22322221101 11 12368899999997
Q ss_pred ccCCcccEEEEEec--ChhHHHHHHHHHHHHhhccccCCChhHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCV--DSKQAAAIRSQIQQIARAMYGSPPVHGILL-VATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 274 ~~G~RvG~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+|.|-|.+. ++ .++ +.+++.+...+...+.+.....+ .+.++.+. .....+.+.++..++.+.|.
T Consensus 231 -rGPrggiI~--~~~~~~~----~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea-----~~~~fk~Y~~qvv~NA~~La 298 (416)
T d1dfoa_ 231 -AGPRGGLIL--AKGGSEE----LYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA-----MEPEFKTYQQQVAKNAKAMV 298 (416)
T ss_dssp -CCCSCEEEE--ESSCCHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCceEEE--eccchHh----HHHHHHhhhCcccccCccHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHH
Confidence 688888885 53 245 67777776655444444333333 33334321 01344677788888899999
Q ss_pred HHHHhhCCCCCccccccCcceeE-ec-----CCCHHHHHHHhhhccEEEe----CC---------C-cEEec-----cCC
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFC-FS-----GLTPYQVDRLAKEFHIYMT----QD---------G-RISMA-----GVT 405 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~ll~~~gI~i~----pg---------g-Ris~~-----~~~ 405 (435)
+.|.+.|+ .+.....-.++ ++ +++...++.+|++.||.+- |+ | ||+.. ++.
T Consensus 299 ~~L~~~G~----~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~ 374 (416)
T d1dfoa_ 299 EVFLERGY----KVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFK 374 (416)
T ss_dssp HHHHHTTC----EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCC
T ss_pred HHHHhCCc----ccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCC
Confidence 99999885 44432222222 33 4577889889999999874 32 3 88743 357
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++.+-|.++++...
T Consensus 375 e~d~~~iA~~I~~~l~~~~ 393 (416)
T d1dfoa_ 375 EAEAKELAGWMCDVLDSIN 393 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 7899999999988886433
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=1.9e-13 Score=128.91 Aligned_cols=216 Identities=14% Similarity=0.041 Sum_probs=147.2
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v 170 (435)
..|.+.|++.-.+. . ++.+++|..|+..+ +++++.+||+|+++...|.+....++ ..|.++..+
T Consensus 61 ~~LE~~la~LE~~~--------~--a~~~~SGmaAi~~~--~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 128 (421)
T d2ctza1 61 DVLEKRLAALEGGK--------A--ALATASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHTCS--------E--EEEESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred HHHHHHHHHHhCCC--------e--EEEecChHHHHHHH--HHhhcccccceeecCCcCCchhHHHHHHHhhccccceec
Confidence 35555666555332 2 34799999998888 88899999999999999988876554 677777766
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC--CccCCCCccc
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ--GFASGDLDKD 248 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~--~~~~~~~~~~ 248 (435)
+. . -+.+..++.++ +++++|++.+|.|||..+.+ +++|+++|+++|+++|+|+.+. .+...
T Consensus 129 d~---~---~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~----- 191 (421)
T d2ctza1 129 SR---E---ERPEEFLALTD---EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR----- 191 (421)
T ss_dssp CT---T---CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC-----
T ss_pred cc---c---cCcchhccccC---CCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceecc-----
Confidence 43 1 13455556666 78999999999999988765 5699999999999999999974 22222
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHH---------------------H-----HHHHH-HHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQA---------------------A-----AIRSQ-IQQ 301 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~---------------------~-----~~~~~-l~~ 301 (435)
++ ...-+|++.|.+|.++-.|.-+|-+++ ..+.... + .++.+ ...
T Consensus 192 --Pl-----~~GaDiVvhS~TKyl~GHsD~l~G~vv-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (421)
T d2ctza1 192 --PL-----AWGAALVTHSLTKWVGGHGAVIAGAIV-DGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263 (421)
T ss_dssp --GG-----GGTCSEEEEETTTTTTCSSCCCCEEEE-ECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHT
T ss_pred --cc-----ccCCcEEEEechhhccCCCCeEEEEEE-cCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHH
Confidence 11 124579999999999767777776653 3222100 0 01111 112
Q ss_pred HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 302 IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 302 ~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
..+.....+++...+.+..-|++ +....++..++...+.+.|++.+
T Consensus 264 ~~~~~G~~~sP~~a~l~~rgl~T----------L~lRm~~~~~nA~~vA~~L~~hp 309 (421)
T d2ctza1 264 GLRDQGQALGPFEAWVVLLGMET----------LSLRAERHVENTLHLAHWLLEQP 309 (421)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHhccCCCCHHHHHHHhcCCcc----------hhhHHHHHHHHHHHHHhhhccCC
Confidence 22234556777777766666654 34556677778888888998875
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.61 E-value=4.4e-14 Score=134.54 Aligned_cols=292 Identities=11% Similarity=0.110 Sum_probs=175.6
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCCCeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQIPERTY 170 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v 170 (435)
-..+.|+.+++.+...+ .+.|. ++.|||++++.+ +..++.+|++|++..-...+.. .....++...+.+
T Consensus 51 i~~~~r~~L~~ll~~~~-----~~~i~--~~gsgT~a~ea~--~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (388)
T d2ch1a1 51 TMDEVKDGLRYIFQTEN-----RATMC--VSGSAHAGMEAM--LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTI 121 (388)
T ss_dssp HHHHHHHHHHHHHTCCC-----SCEEE--ESSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCC-----CeEEE--EcCcHHHHHHHH--HHHhccccccccccccccccccchhhhhhhccccccc
Confidence 34677788877774322 12333 677889999988 8888889999998876664443 3455667777666
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
.. .+....+.+..++.... .+++++++++.+|.||...+.+ ++.++|++++.++++|.+.. +...+.+
T Consensus 122 ~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~~~~~---~i~~~~~~~~~~~~vD~~ss-~g~~pid---- 189 (388)
T d2ch1a1 122 EG--PPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQPLE---GVGQICHQHDCLLIVDAVAS-LCGVPFY---- 189 (388)
T ss_dssp EC--CTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---THHHHHHHTTCEEEEECTTT-BTTBCCC----
T ss_pred cc--ccccccchhhhhhhhcc--CCcceeeeeecccccccccchh---hhcchhccccceeeeeeeec-ccccccc----
Confidence 65 44456777777777653 4578888889999999998776 88889999999999999943 3322221
Q ss_pred HHHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHh----------------------h-cc
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIA----------------------R-AM 306 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~----------------------~-~~ 306 (435)
.+..+.++++.|-.|.++ .+| +|++.. +++ .++...... . ..
T Consensus 190 -----~~~~~~d~~~~s~~K~~~gp~G--~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (388)
T d2ch1a1 190 -----MDKWEIDAVYTGAQKVLGAPPG--ITPISI---SPK----ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRY 255 (388)
T ss_dssp -----TTTTTCCEEECCCC-CCCCCSS--CEEEEE---CHH----HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred -----hhccCceEEEEccccccCCCCe--EEEEec---cHH----HHHhhhcccCccccccccchhhhhhhccccccccc
Confidence 122345677788888764 344 455543 666 333322110 0 11
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC-cce--eEec-CCCHHHH
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ-LGM--FCFS-GLTPYQV 382 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~--~~~~-~~~~~~~ 382 (435)
...++.....++..++.... ........++.+.........+...+........... .+. |.+. +++.+.+
T Consensus 256 ~~t~~~~~i~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~~~l 330 (388)
T d2ch1a1 256 HHTVASNLIFALREALAQIA-----EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKV 330 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHH
T ss_pred CccchHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCHHHH
Confidence 12233333333333332110 1223334444444444555555555432111111111 122 2222 5665544
Q ss_pred -HHHhhhccEEEeCCC--------cEE-eccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 383 -DRLAKEFHIYMTQDG--------RIS-MAGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 383 -~~ll~~~gI~i~pgg--------Ris-~~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
..+++++||.+.+|. ||| ++.. +.|++++++++|+++|+..+
T Consensus 331 ~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 331 SQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp HHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 666677899998862 999 6544 56899999999999998754
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.61 E-value=3.2e-14 Score=134.86 Aligned_cols=315 Identities=16% Similarity=0.122 Sum_probs=183.6
Q ss_pred CCcccchHHHHHHHHhcCCCCCCCCC--CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCC
Q 013839 65 GRPVVLQCVREAEAKIAGSEFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP 142 (435)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~ 142 (435)
|+..+++.|.+++... . ...+.+ ..-+.+.|+.+++.+...+ ...|. ++.||+++++.+ +..++.+
T Consensus 25 GP~~v~~~Vl~am~~~--~-~~hr~~ef~~i~~~~r~~l~~ll~~~~-----~~~i~--~~g~gT~~~~~~--~~~~~~~ 92 (377)
T d1vjoa_ 25 GPSNAHPSVLQAMNVS--P-VGHLDPAFLALMDEIQSLLRYVWQTEN-----PLTIA--VSGTGTAAMEAT--IANAVEP 92 (377)
T ss_dssp SCCCCCHHHHHHHSSC--C-CCTTSHHHHHHHHHHHHHHHHHHTCCC-----SCEEE--ESSCHHHHHHHH--HHHHCCT
T ss_pred CCCCCCHHHHHHhCcC--C-CCCCCHHHHHHHHHHHHHHHHHhCCCC-----CeEEE--EcCcHHHHHHHH--HHhcccc
Confidence 3345555555444321 1 222332 2335677888888773322 12344 678889999988 7888899
Q ss_pred CCEEEEcCCCChhhH--HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 013839 143 ESHIYFPDPTWSNHH--NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREI 220 (435)
Q Consensus 143 gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i 220 (435)
|+++++..-.+.... ......+.....+.. +.+...+.+..+....+ +.++++.+++.+|.||...+.+ +|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~i~---~i 165 (377)
T d1vjoa_ 93 GDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALET--HRPAILALVHAETSTGARQPLE---GV 165 (377)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---TH
T ss_pred ccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeeechh---hh
Confidence 999988876664432 233445555555443 33345566666655442 4567888888899999988755 89
Q ss_pred HHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH
Q 013839 221 SYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ 300 (435)
Q Consensus 221 ~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~ 300 (435)
.++|+++|.++++|.+.. ++..+.+ .+..+.++++.|..|.++.++ .+|++.. .++ .++...
T Consensus 166 ~~~~~~~g~~~~vDa~~~-~g~~~~~---------~~~~~~d~~~~s~~K~~~gp~-g~~~~~~---~~~----~~~~~~ 227 (377)
T d1vjoa_ 166 GELCREFGTLLLVDTVTS-LGGVPIF---------LDAWGVDLAYSCSQKGLGCSP-GASPFTM---SSR----AIEKLQ 227 (377)
T ss_dssp HHHHHHHTCEEEEECTTT-TTTSCCC---------TTTTTCSEEECCSSSTTCSCS-SCEEEEE---CHH----HHHHHH
T ss_pred hhhhhhccceEEEecchh-hhhhhhc---------ccccccceeeecccccccCCC-EEEEecc---hhh----HHhhhh
Confidence 999999999999999953 2222111 122345677888888765333 2455542 666 333222
Q ss_pred HHh-------------------hccccCCChhHH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 301 QIA-------------------RAMYGSPPVHGI-LLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 301 ~~~-------------------~~~~~~~~~~~q-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
... .....+++.... .++..+.... -....+...++.+++.+.+.+.+...+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~ 302 (377)
T d1vjoa_ 228 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI-----AQEGLANCWQRHQKNVEYLWERLEDIGLSL 302 (377)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred ccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhh-----hhcCchHHHHHHHHHhhhhhhhhhccCcee
Confidence 111 111222222222 2222222111 113356777788888888999998876421
Q ss_pred Ccccc-ccCcce-eEec-CCCHHHH-HHHhhhccEEEeCC-----C---cEE-eccC-CCCcHHHHHHHHHHHHH
Q 013839 361 NWEHI-TNQLGM-FCFS-GLTPYQV-DRLAKEFHIYMTQD-----G---RIS-MAGV-TTGNVNYLANAIHEVTR 421 (435)
Q Consensus 361 ~~~~~-~~~~g~-~~~~-~~~~~~~-~~ll~~~gI~i~pg-----g---Ris-~~~~-~~e~i~~~~~~l~~~l~ 421 (435)
..... ...+.. |... +++.+.+ ..|++++||.+..| | ||| ++.. +.|++++++++|+++++
T Consensus 303 ~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 303 HVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp SSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 11110 111111 2222 4566555 66778889999775 2 998 4432 57889999999998873
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=4.6e-13 Score=125.59 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=134.2
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
++.+++|..|+.. ++.++.+||+|++....|.+....+. ..|.++..++ .+.++++++++ ++
T Consensus 73 a~~~sSGmaAi~~---~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~--------~~~~~~~~~i~---~~ 138 (393)
T d1n8pa_ 73 GLAFSSGSATTAT---ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN--------DLLNDLPQLIK---EN 138 (393)
T ss_dssp EEEESCHHHHHHH---HHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES--------SHHHHHHHHSC---SS
T ss_pred EEEecCchhHHHh---hhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee--------cchHHHHHHhh---hh
Confidence 3468899888754 45678899999999999988877665 4455554442 24578888887 78
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFK----VKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
+++|++.+|.||+..+.+.+ +|+++|+ ++|+++|+|..|.. ++..-+-...-+|++.|.+|.
T Consensus 139 t~lv~~EspsNP~l~v~Di~---~ia~~a~~~~~~~g~~lvVDnT~at-----------P~~~~Pl~~GADiVvhS~TKy 204 (393)
T d1n8pa_ 139 TKLVWIETPTNPTLKVTDIQ---KVADLIKKHAAGQDVILVVDNTFLS-----------PYISNPLNFGADIVVHSATKY 204 (393)
T ss_dssp EEEEEECSSCTTTCCCCCHH---HHHHHHHHHTTTTTCEEEEECTTTH-----------HHHCCGGGGTCSEEEEETTTT
T ss_pred cceeEecCcchhhhhccchh---hhhhhhhhhcccCCceEEEecCccC-----------cccCCchhhCCCEEEEccccc
Confidence 99999999999998887655 6666666 78999999998632 111111122457999999999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQ 351 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
++-.|-=+|-++ +..+++ +.+.++.........+++...+.+..-+++ +....++..++...+.+
T Consensus 205 i~GhsDv~~G~v-~~~~~~----~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T----------l~lR~~~~~~nA~~lA~ 269 (393)
T d1n8pa_ 205 INGHSDVVLGVL-ATNNKP----LYERLQFLQNAIGAIPSPFDAWLTHRGLKT----------LHLRVRQAALSANKIAE 269 (393)
T ss_dssp TTCSSCCCCEEE-EESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccccee-eecchh----HHHHHHHHHhhcCCCCChHHHHHHHhCCcc----------hhhHHHHHHHHHHHHHH
Confidence 865554444443 244666 666677666555566777766666666654 34455666777777788
Q ss_pred HHHhh
Q 013839 352 NLEKL 356 (435)
Q Consensus 352 ~l~~~ 356 (435)
.|+..
T Consensus 270 ~L~~~ 274 (393)
T d1n8pa_ 270 FLAAD 274 (393)
T ss_dssp HHTSC
T ss_pred HHHhc
Confidence 88643
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.60 E-value=1.6e-12 Score=122.10 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=179.1
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v 170 (435)
..|.+.+++.-.+. . ++.+++|..|+..+ +++++.+||+|++.+..|.+.... +...|.++..+
T Consensus 62 ~~le~~la~LEg~~--------~--a~~~sSGmaAi~~~--~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~ 129 (394)
T d1e5ea_ 62 SNLEGKIAFLEKTE--------A--CVATSSGMGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFI 129 (394)
T ss_dssp HHHHHHHHHHHTCS--------E--EEEESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCc--------c--eeeeccchHHHHHH--HHhhcccccccccccceeehhhHhHHHHhhccceeeecc
Confidence 35656666554322 2 34689999999887 888999999999999999776554 44678777777
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH-hcCceeeeeccCCCccCCCCcccH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFK-VKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
+. -|.++++++++ +++++|++.+|.|||..+.+.+ ++++.++ ++++++|+|..+..-..-.
T Consensus 130 d~-------~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~Di~---~~~~~~~~~~g~~vvvDnT~atP~~~~----- 191 (394)
T d1e5ea_ 130 NT-------AIPGEVKKHMK---PNTKIVYFETPANPTLKIIDME---RVCKDAHSQEGVLVIADNTFCSPMITN----- 191 (394)
T ss_dssp CT-------TSTTHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHTSTTCEEEEECTTTCTTTCC-----
T ss_pred CC-------CCHHHHHHhhc---ccccEEEEeccCCcceeeehhh---hhhhccccccCeEEEecCcccCcccCC-----
Confidence 53 26778999998 7899999999999998877644 7777665 4689999999874333211
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCChhh
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
++ + ..-+|++.|.+|.++-.+.=+|.+++ + +.+ .+...+.. .......+++...+.+..-|++
T Consensus 192 -Pl----~-~GaDiVvhS~TKy~~GhsDv~~G~v~-~-~~~----~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T--- 256 (394)
T d1e5ea_ 192 -PV----D-FGVDVVVHSATKYINGHTDVVAGLIC-G-KAD----LLQQIRMVGIKDITGSVISPHDAWLITRGLST--- 256 (394)
T ss_dssp -GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE-E-CHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT---
T ss_pred -ch----h-cCCCEEEechhhhcCCCccccccccc-c-hhh----HHHHHHHHHHHHhhCCCCChHHHHHHHhhchh---
Confidence 11 1 13479999999998655555555542 4 666 55444322 2233445666666666565654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc---------------cccCcceeEecCC-CHHHHHHHhhhccE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH---------------ITNQLGMFCFSGL-TPYQVDRLAKEFHI 391 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~~~-~~~~~~~ll~~~gI 391 (435)
+....++..++...+.+.|++++.-..+.+ ....||++.|.-. +.+...++++.-.+
T Consensus 257 -------L~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l 329 (394)
T d1e5ea_ 257 -------LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKL 329 (394)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSS
T ss_pred -------HHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCc
Confidence 455667788888889999988753100100 1122566665422 33445555555443
Q ss_pred EE-eC--CC-------------------------------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 392 YM-TQ--DG-------------------------------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 392 ~i-~p--gg-------------------------------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.. .+ || |+|++- |+.+.+++.|.++++.+
T Consensus 330 ~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl---Ed~eDLi~Dl~qAl~~l 392 (394)
T d1e5ea_ 330 ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDAL 392 (394)
T ss_dssp SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred cceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHHh
Confidence 22 11 11 899854 78888888888887654
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=1.3e-13 Score=130.58 Aligned_cols=331 Identities=15% Similarity=0.093 Sum_probs=196.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-|. -.+++++.+.+++.+.... +..-..+.+..+++.+....... .+++. ++++|
T Consensus 34 ~dG~~ylD~~~g~~~~~lGh-~hp~v~~a~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~--~~~v~--f~~sG 105 (387)
T d1vefa1 34 AEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAM---PQTLPTPMRGEFYRTLTAILPPE--LNRVF--PVNSG 105 (387)
T ss_dssp TTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCC---CTTSCCHHHHHHHHHHHHTSCTT--EEEEE--EESSH
T ss_pred CCCCEEEEcchhHHhhhhcC-CcHHHHHHHHHHHHhhccc---ccccCCchHHHHHHHhhhhcccc--ceeec--cccCc
Confidence 36688899877642111221 1223333344444321111 11111244555555542221110 23566 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
++|++.+..+........+|+....+|.+.......... .+..+|. .|.+.|++.+.
T Consensus 106 seA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~--- 175 (387)
T d1vefa1 106 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVD--- 175 (387)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCC---
T ss_pred hHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcC---
Confidence 999999976665555558899999888765433222111 1122221 27889998886
Q ss_pred CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
+...+|++.......|.. .+++.+++|.++|++||+++|.||+..+|+..+. .+....+ +....++ +++|.+
T Consensus 176 ~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~~~~~~-~v~PDi~---~~gK~l 248 (387)
T d1vefa1 176 EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEHF-GIVPDIL---TLAKAL 248 (387)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCSEE---EECGGG
T ss_pred CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC---CcccccC-CcCCcee---eecccC
Confidence 567788775555556764 5788899999999999999999999988854432 1122222 2222233 378998
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
+ .|.-++.+++ .++ +...+.......+.+.++++..++.+.|+.-. -....++.++..+++.+.
T Consensus 249 ~-gG~~~~~~~~---~~~----~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~--------~~~~~~~v~~~g~~l~~~ 312 (387)
T d1vefa1 249 G-GGVPLGVAVM---REE----VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE--------RTRLWERAAELGPWFMEK 312 (387)
T ss_dssp G-TTSSCEEEEE---EHH----HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--------HHTTHHHHHHHHHHHHHH
T ss_pred C-CCcccccccc---cee----eeeccccCCccccCCCCcchhhhcccchhhcc--------cccccchHhhhhHHHHHH
Confidence 8 7887777754 566 55555443334566777887777777664211 124456667777788888
Q ss_pred HHhhCCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 353 LEKLGSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 353 l~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
|+++..+ .+......| ++.-+.+ ....+..++.+.|+.+.+.| |++.+ ..+++++++++++|++++
T Consensus 313 L~~l~~~-~v~~vrg~G-l~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 313 LRAIPSP-KIREVRGMG-LMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp HHTSCCT-TEEEEEEET-TEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCC-ceEEEeecc-eEEEEEEeCCchHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 8877532 122222233 3332322 34455555566788877654 66642 348999999999998876
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.57 E-value=7.9e-14 Score=131.14 Aligned_cols=326 Identities=13% Similarity=0.121 Sum_probs=195.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCC------CC---cccHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESI------SA---SVSTKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~------~~---~g~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|-..+ -..++.++++...... ....+|+ .. +-+..+....|+.+++.+.. ++-+
T Consensus 27 ~~~l~LiaSE-------N~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a----~w~v 95 (463)
T d2a7va1 27 CRGLELIASE-------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGV 95 (463)
T ss_dssp HHSEECCTTC-------CCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT----TEEE
T ss_pred hcCeeEeccC-------CcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCch----hccC
Confidence 4567887776 2455666666665552 2222232 22 22344455556667776532 1111
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH--------hhCC--CCeeeeeecCCCCCCcChHhHHHHh
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW--------RDAQ--IPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~--------~~~g--~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
-+...+|+.|+..+ +.++++|||+|+..++...++..-- ...| .+...|.+ +++++.+|.+++++..
T Consensus 96 NVqp~SGs~An~av--~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~-d~~~~~IDyd~~~~~a 172 (463)
T d2a7va1 96 NVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTA 172 (463)
T ss_dssp ECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCB-CTTTCSBCHHHHHHHH
T ss_pred CccccccHHHHHHH--HHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeec-cCCCCcCcHHHHHHHH
Confidence 22578899998888 8999999999999887776664221 1122 24555665 4566789999999998
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
.+ .++++|+.....+|--. +++++.++|++.|++++.|.++ .++.-++.-++ ++ + .-.++.+|.
T Consensus 173 ~~--~kPklIi~G~S~y~r~~-----d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s--P~----~--~aDvvt~tT 237 (463)
T d2a7va1 173 RL--FRPRLIIAGTSAYARLI-----DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----K--HADIVTTTT 237 (463)
T ss_dssp HH--HCCSEEEECCSSCCSCC-----CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCC--GG----G--TCSEEEEES
T ss_pred hh--cCCceEEeccccccccc-----CHHHHHHHhhcccceEEechhhhhHHhhhhhhcC--hh----h--hhhhhhchh
Confidence 75 45789988766666533 5678999999999999999995 34443332111 22 1 235788899
Q ss_pred cccccccCCcccEEEEEecCh--------------hHHHHHHHHHHHHhhccccCCChhHHHH-HHHHhCChhhHHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDS--------------KQAAAIRSQIQQIARAMYGSPPVHGILL-VATILSDPNLKSLWID 333 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~q~~-~~~~l~~~~l~~~~~~ 333 (435)
.|+| +|-|.|.+. +... + +.+++.+...+...+.+...+.+ .+.++.+. ...
T Consensus 238 HKTl--rGPrgGiIl--~~~~~~~~~~~~~~~~~~~----~~~~i~~avFPg~qggph~h~iAa~Ava~~ea-----~~~ 304 (463)
T d2a7va1 238 HKTL--RGARSGLIF--YRKGVKAVDPKTGREIPYT----FEDRINFAVFPSLQGGPHNHAIAAVAVALKQA-----CTP 304 (463)
T ss_dssp SGGG--CSCSCEEEE--EECSEEEEETTTEEEEECC----CHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH-----HSH
T ss_pred hhhh--cCCCceEEE--EcccccccccccCccchhH----HHHHhhhhcCcccchhhhhhhHHHHHHHHHHh-----cCc
Confidence 9997 788977774 5332 5 66777776655444444333333 33333321 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeE-ec-----CCCHHHHHHHhhhccEEEe----CC-------
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC-FS-----GLTPYQVDRLAKEFHIYMT----QD------- 396 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~ll~~~gI~i~----pg------- 396 (435)
..+.+.++..++.+.|.+.|.+.|+ .+.....-.++ ++ +++...+++.|++.||.+- |+
T Consensus 305 ~fk~Ya~qVv~NAk~La~~L~~~G~----~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~ 380 (463)
T d2a7va1 305 MFREYSLQVLKNARAMADALLERGY----SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITP 380 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC----eeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCC
Confidence 4567778888888999999998885 34433222233 33 4477888888899999985 22
Q ss_pred -C-cEEec-----cCCCCcHHHHHHHHHHHHH
Q 013839 397 -G-RISMA-----GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 397 -g-Ris~~-----~~~~e~i~~~~~~l~~~l~ 421 (435)
| ||+.. ++.++++.++.+-|.++++
T Consensus 381 sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 381 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3 88743 3467888888888887764
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4e-14 Score=138.23 Aligned_cols=308 Identities=13% Similarity=0.069 Sum_probs=181.4
Q ss_pred CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCE---------EEEcCCCChh
Q 013839 85 FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESH---------IYFPDPTWSN 155 (435)
Q Consensus 85 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~---------Vlv~~p~y~~ 155 (435)
...|.......+|.+.+++++ +.. .++ .+++|++|+.++ +..++.+||. +......+..
T Consensus 67 d~~Y~~~~~~~~le~~~a~l~-G~~-------~~~--~~~sGt~A~~~a--~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 134 (467)
T d2v1pa1 67 DEAFSGSRSYYALAESVKNIF-GYQ-------YTI--PTHQGRGAEQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDT 134 (467)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT-CCS-------EEE--EECSSTTTHHHH--HHHHHHHHHHHHCCCTTTCEEEESSCCHH
T ss_pred chhhcCCchHHHHHHHHHHHH-CCC-------EEE--ECCCCHHHHHHH--HHHHhhccceEecCCCCcEEEEecccccc
Confidence 345888888899999999987 432 334 799999999988 5555555543 4444455555
Q ss_pred hHHHHhhCCCCeeeeeecC--------CCCCCcChHhHHHHhhcC-CCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHH
Q 013839 156 HHNIWRDAQIPERTYHYYD--------PDSKSLDFAALMDDIKNA-PDSSFFLLHPSAHNPT-GVDPTEEQWREISYQFK 225 (435)
Q Consensus 156 ~~~~~~~~g~~~~~v~~~~--------~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~ 225 (435)
........|+.++.++... .....+|++++++.+.+. ++.+.++++.+.+|.. |..++.+++++|.++|+
T Consensus 135 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~ 214 (467)
T d2v1pa1 135 TQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214 (467)
T ss_dssp HHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHH
T ss_pred cHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHH
Confidence 6667778888887776521 113578999999998754 2345677777776654 67889999999999999
Q ss_pred hcCceeeeeccCCCc----------cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH
Q 013839 226 VKGHFPFFDMAYQGF----------ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI 295 (435)
Q Consensus 226 ~~~~~vi~Deay~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~ 295 (435)
+||+++++|++.... .+.+ .....+..- -.....++..|.+|.++. ...|++. + +.+.....
T Consensus 215 ~~g~~l~~D~a~~~~~~~~~~~~~~~~~~--~~~~~i~~~-~~~~~d~~s~s~~K~~~~--~~gg~i~--~-~~~~~~~~ 286 (467)
T d2v1pa1 215 KYDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRE-TYKYADMLAMSAKKDAMV--PMGGLLC--M-KDDSFFDV 286 (467)
T ss_dssp HTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHH-HGGGCSEEEEESSSTTCC--SSCEEEE--E-CSGGGHHH
T ss_pred HcCCEEEEechhhhccccccccccccccC--Ccccccchh-hcccCCEEEecCCCCCCC--CCceeEE--e-cchhhhhH
Confidence 999999999995211 1111 111111110 011235666788888763 3345553 4 44422222
Q ss_pred HHHHHHHhh-----ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc-
Q 013839 296 RSQIQQIAR-----AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL- 369 (435)
Q Consensus 296 ~~~l~~~~~-----~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 369 (435)
....+.... ....+.+.....++...+... ....+.++..++.+++.+.|.+.+. .+.++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~l~~~L~~~~~----~v~~~~~~ 354 (467)
T d2v1pa1 287 YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG--------MNLDWLAYRIAQVQYLVDGLEEIGV----VCQQAGGH 354 (467)
T ss_dssp HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHHTTC----CEEEECSS
T ss_pred HHhhcccccccccCcchhhhHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHHHHHHHhcCC----cccCCCcc
Confidence 222222211 111223333333332222211 1123334445667788888888764 2222222
Q ss_pred ceeEec-----CC------CHHHHHHHhhhccEEEeCCC---------------------cEEec--cCCCCcHHHHHHH
Q 013839 370 GMFCFS-----GL------TPYQVDRLAKEFHIYMTQDG---------------------RISMA--GVTTGNVNYLANA 415 (435)
Q Consensus 370 g~~~~~-----~~------~~~~~~~ll~~~gI~i~pgg---------------------Ris~~--~~~~e~i~~~~~~ 415 (435)
..+... .. ....+..++.+.||.....| |+++. ..|+|+|++++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~ 434 (467)
T d2v1pa1 355 AAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434 (467)
T ss_dssp CEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHH
T ss_pred ceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHH
Confidence 112211 11 12345667778898664221 88763 2378999999999
Q ss_pred HHHHHHhhh
Q 013839 416 IHEVTRSEQ 424 (435)
Q Consensus 416 l~~~l~~~~ 424 (435)
|+++.++..
T Consensus 435 l~~v~~~~~ 443 (467)
T d2v1pa1 435 FKHVKENAA 443 (467)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHHHH
Confidence 999987543
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=9.2e-14 Score=133.63 Aligned_cols=347 Identities=11% Similarity=0.012 Sum_probs=190.6
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC--CcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...||+..|.-...-| .-.+++++++.+++.......... .....++-+.+.+.+-+.. .+.+. +++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~v~--f~~ 108 (425)
T d1sffa_ 37 VEGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDF-----AKKTL--LVT 108 (425)
T ss_dssp TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSS-----CEEEE--EES
T ss_pred CCCCEEEEcCcCHHhhccc-CCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcc-----cceee--eec
Confidence 4678999999885312122 123344555555554321111111 1112334444444442221 12455 799
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCC-------------eeeee--ecCCCCCCcCh-HhHHH
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIP-------------ERTYH--YYDPDSKSLDF-AALMD 187 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~-------------~~~v~--~~~~~~~~~d~-e~l~~ 187 (435)
+|++|.+.+..+......-.+|+....+|.+...... ..|.. ....+ ........... +..++
T Consensus 109 sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (425)
T d1sffa_ 109 TGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR 188 (425)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHH
T ss_pred cccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHH
Confidence 9999999997666555555788988888877654332 22211 01111 10000000000 11111
Q ss_pred Hh--hcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 188 DI--KNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 188 ~i--~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
.+ .....+..++++..-+...|.. .+++.+++|.++|++||+++|.||+..++...+. .+....+ +....
T Consensus 189 ~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~---~~a~~~~-gv~PD--- 261 (425)
T d1sffa_ 189 IFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAMEQM-GVAPD--- 261 (425)
T ss_dssp HHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-TSCCS---
T ss_pred HHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch---hhHHHhc-CCCcc---
Confidence 11 1223456777776555556654 5788899999999999999999999988654331 1122222 22222
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+.+++|.+| .|+.+|.+++ +++ +.+.+.......+++.++++..++.+.|+.-. +. +..+...+.-..
T Consensus 262 i~~~gK~l~-gG~P~~av~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--~~--~~~~~~~~~g~~ 329 (425)
T d1sffa_ 262 LTTFAKSIA-GGFPLAGVTG---RAE----VMDAVAPGGLGGTYAGNPIACVAALEVLKVFE--QE--NLLQKANDLGQK 329 (425)
T ss_dssp EEEECGGGG-TSSCCEEEEE---EHH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH--HT--THHHHHHHHHHH
T ss_pred ceecccccC-CCcceEEEEE---cHH----HHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH--Hh--hhhhhhhhhhhh
Confidence 334899998 7889998865 777 76666554445567777888777777764211 00 112222222222
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEec----C---C-CH----HHHHHHhhhccEEEeCCC------cEEec-cCC
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFS----G---L-TP----YQVDRLAKEFHIYMTQDG------RISMA-GVT 405 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~----~---~-~~----~~~~~ll~~~gI~i~pgg------Ris~~-~~~ 405 (435)
.++.+.+.+++.+. +......|.++.+. . . +. .+..+++ ++||.+.+.| ||+.. ..+
T Consensus 330 l~~~l~~~~~~~~~---v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~g~~~n~i~~~PpL~it 405 (425)
T d1sffa_ 330 LKDGLLAIAEKHPE---IGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPYYNVLRILVPLTIE 405 (425)
T ss_dssp HHHHHHHHHHTCTT---EEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTTSCEEEECCCTTCC
T ss_pred hhhhhhhhHhhCCc---eEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHH-HCCCEEeccCCCCCEEEEECCCCCC
Confidence 33333344444442 22333445443321 0 1 22 2345554 5899998764 56532 248
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
+++|++++++|.+++++++
T Consensus 406 ~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 406 DAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998865
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=5.2e-13 Score=128.84 Aligned_cols=347 Identities=13% Similarity=0.071 Sum_probs=204.3
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~g 125 (435)
+....+|..... .+..+.+.+++....+.....+.......++.+.+.+++ ++.... ..+...+.+|.|
T Consensus 52 g~~~~n~asf~~------t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~--~~~~~~G~~t~G 123 (450)
T d1pmma_ 52 GNARQNLATFCQ------TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAP--KNGQAVGTNTIG 123 (450)
T ss_dssp CCGGGBCSCCSC------CCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCC--TTSCCSEEEESS
T ss_pred CCcccccccccc------CCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCcc--ccCCCcCeeeCc
Confidence 333456666542 222334445555543321232332233345555544444 232100 012334568999
Q ss_pred chhHHHHHHHHHHH-h--------CCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 126 GTGACRLFAEFQRR-F--------HPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 126 g~~a~~~~~~~~~~-~--------~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
|++|+.++...... + .++ ..+++....+..+...++..|++++.++. +++++.+|++.|+++++ +.
T Consensus 124 gSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~-~~~~~~~d~~~L~~~i~---~~ 199 (450)
T d1pmma_ 124 SSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPM-RPGQLFMDPKRMIEACD---EN 199 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCC-BTTBCSCCHHHHHHHCC---TT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeee-cCCCCcCcHHHHHHHhh---hC
Confidence 99998887422111 1 122 35677777888888899999999999988 45668999999999998 67
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHH---HHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISY---QFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~---~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
+.+|+.+.++|.||.+-+.+++..|++ .|+++++++.+|.+|.++... .... ..........-+.+..|.+|.+
T Consensus 200 t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p-~~~~--~~~~~~~~~~aDSi~~s~HK~~ 276 (450)
T d1pmma_ 200 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP-FVAP--DIVWDFRLPRVKSISASGHKFG 276 (450)
T ss_dssp EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH-HHCT--TCCCSTTSTTEEEEEEETTTTT
T ss_pred ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee-eech--hhhhhhcccceeEeecChhhcc
Confidence 899999999999999988886665554 477899999999998665310 0000 0000012234567788999987
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHH--------hhccccCCChh-HHH-HHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQI--------ARAMYGSPPVH-GIL-LVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~-~q~-~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+ ....+||+. .++++ ........ ....+...+.. .+. .+-..+..- -.+..++..++.
T Consensus 277 ~-~p~g~g~l~--~r~~~----~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~-----G~~G~~~~~~~~ 344 (450)
T d1pmma_ 277 L-APLGCGWVI--WRDEE----ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL-----GREGYTKVQNAS 344 (450)
T ss_dssp C-CCSSCEEEE--ESSGG----GSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred C-CCCCeeEEE--ecChh----hhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhh-----hHHHHHHHHHHH
Confidence 6 335589986 34554 21111000 00011111111 111 111112111 125567788888
Q ss_pred HHHHHHHHHHHHhhCCCCCcccccc---C--cceeEec-------CCCHHHHHHHhhhccEEEe----CC-C------cE
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITN---Q--LGMFCFS-------GLTPYQVDRLAKEFHIYMT----QD-G------RI 399 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~---~--~g~~~~~-------~~~~~~~~~ll~~~gI~i~----pg-g------Ri 399 (435)
.++.+++.+.|++.+. +.+..+ . -+.+.|- +++...+...|.++|+.+. |. . |+
T Consensus 345 ~~la~~l~~~L~~~~~---~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRv 421 (450)
T d1pmma_ 345 YQVAAYLADEIAKLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRI 421 (450)
T ss_dssp HHHHHHHHHHHHTTSC---EEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCC---eEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEE
Confidence 8899999999998863 444321 1 2223332 3455566556677897653 22 1 88
Q ss_pred Eecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 400 SMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 400 s~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+.. .+.+.++++++.|+++++++++
T Consensus 422 vv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 422 MCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8743 3678899999999999988764
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.2e-13 Score=128.68 Aligned_cols=331 Identities=13% Similarity=0.050 Sum_probs=193.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCC-CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLE-SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..||+..|.-...-|. ..+++++++.+++....... +....-...+.+.+++.. +. +.+. ++++
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh-~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~v~--~~~s 106 (404)
T d2byla1 38 VEGRKYFDFLSSISAVNQGH-CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-NY-------HKVL--PMNT 106 (404)
T ss_dssp TTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH-TC-------SEEE--EESS
T ss_pred CCCCEEEEecCCHHHHhhcC-CCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc-cc-------cccc--cccC
Confidence 36788999988853121222 23345555555665321111 111122234444444443 32 3566 8999
Q ss_pred chhHHHHHHHHHHHh-------C-CCCEEEEcCCCChhhHHHHhhCCCC-------------eeeeeecCCCCCCcChHh
Q 013839 126 GTGACRLFAEFQRRF-------H-PESHIYFPDPTWSNHHNIWRDAQIP-------------ERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 126 g~~a~~~~~~~~~~~-------~-~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~ 184 (435)
|++|.+.+..+.... . ....++...-+|.+........... +..+| ..|++.
T Consensus 107 GseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p-------~~d~~~ 179 (404)
T d2byla1 107 GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIP-------YNDLPA 179 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEEC-------TTCHHH
T ss_pred ccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEec-------ccCHHH
Confidence 999999997554321 1 2246776666665432222111111 11122 137889
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
+++.+.+ ++..++++.......|.. .+++.+++|.++|++||+++|.||+..+|.-.+. .+....+ +... +|
T Consensus 180 l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~a~~~~-gv~P-Di 252 (404)
T d2byla1 180 LERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDYE-NVRP-DI 252 (404)
T ss_dssp HHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCC-SE
T ss_pred HHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc---cchhhhc-CCCC-CE
Confidence 9998863 456777775555556744 5788899999999999999999999988754431 1222222 2222 22
Q ss_pred EEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 264 ~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+ +++|.++ .| +.+|.+++ +++ +.+.+.......+.+.++++..++.+.|+.-. -+...++.
T Consensus 253 ~--~~gK~l~-gG~~p~~av~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--------~~~l~~~~ 314 (404)
T d2byla1 253 V--LLGKALS-GGLYPVSAVLC---DDD----IMLTIKPGEHFSTYGGNPLGCRVAIAALEVLE--------EENLAENA 314 (404)
T ss_dssp E--EECGGGG-TTSSCCEEEEE---CHH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--------HTTHHHHH
T ss_pred E--EECchhh-CCCccceeeee---chh----hhhccCCCCCCcCCCcCHHHHHHHHHHHHHHH--------hcCchhhh
Confidence 2 6899998 55 78888864 777 66655544444566777887777777775311 12345556
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCcceeEec--C---CCH-HHHHHHhhhccEEEeCC-C---cEEec-cCCCCcHHH
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--G---LTP-YQVDRLAKEFHIYMTQD-G---RISMA-GVTTGNVNY 411 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~---~~~-~~~~~ll~~~gI~i~pg-g---Ris~~-~~~~e~i~~ 411 (435)
++..+++.+.|+++..+ .+......|-++.+. . ... +.+.+++ ++||.+.+. + |++.. ..+++++++
T Consensus 315 ~~~g~~l~~~l~~l~~~-~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~-~~Gvl~~~~~~~~i~l~PpL~it~~~id~ 392 (404)
T d2byla1 315 DKLGIILRNELMKLPSD-VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR-DNGLLAKPTHGDIIRFAPPLVIKEDELRE 392 (404)
T ss_dssp HHHHHHHHHHHHTSCTT-TEEEEEEETTEEEEEECCCSSCCHHHHHHHHH-HTTEECEEEETTEEEECCCTTCCHHHHHH
T ss_pred hHhhHHHHHHHHhhccc-cceeeeecccEEEEEEecCCchhHHHHHHHHH-hCCeEEecCCCCEEEEECCcCCCHHHHHH
Confidence 66677788888776432 122223333332221 1 123 3446554 689999874 3 55532 348999999
Q ss_pred HHHHHHHHHHh
Q 013839 412 LANAIHEVTRS 422 (435)
Q Consensus 412 ~~~~l~~~l~~ 422 (435)
++++|.+++++
T Consensus 393 ~~~~l~~al~~ 403 (404)
T d2byla1 393 SIEIINKTILS 403 (404)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998864
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=9.4e-13 Score=126.27 Aligned_cols=346 Identities=9% Similarity=-0.035 Sum_probs=193.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.++...||+..|.-...-| --.+++++++.+++.......+. +.....++.+.+.+... .. .+.+. +++
T Consensus 40 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~-----~~~v~--f~~ 110 (429)
T d1s0aa_ 40 SDGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTP-QP-----LECVF--LAD 110 (429)
T ss_dssp TTSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSC-TT-----CCEEE--EES
T ss_pred CCCCEEEECcccHHHHhhc-CCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhc-cC-----cceee--ecc
Confidence 3567899998874211112 11233334444444321111011 11112233344433331 11 24566 899
Q ss_pred CchhHHHHHHHHHHHh-----CCCCEEEEcCCCChhhHHHH-hhCCC-------------CeeeeeecC----CCCCCcC
Q 013839 125 SGTGACRLFAEFQRRF-----HPESHIYFPDPTWSNHHNIW-RDAQI-------------PERTYHYYD----PDSKSLD 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~-~~~g~-------------~~~~v~~~~----~~~~~~d 181 (435)
+|++|++.+..+.... .+..+|+....+|.+..... ...+. .....|... .....-+
T Consensus 111 sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (429)
T d1s0aa_ 111 SGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGG
T ss_pred ccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhh
Confidence 9999999887544432 23368888888886553322 21111 111111100 1112234
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSA-HNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.+++.+.+.++...++++... ++-.|. ..+++.+++|.++|++||+++|.||+..+|+..+. .+....+ +..
T Consensus 191 ~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~---~~~~~~~-~v~ 266 (429)
T d1s0aa_ 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEHA-EIA 266 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCC
T ss_pred hhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc---ccccccc-eec
Confidence 56666666555566777777544 355555 45889999999999999999999999998855431 1122222 222
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh-----hccccCCChhHHHHHHHHhCChhhHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-----RAMYGSPPVHGILLVATILSDPNLKSLWIDE 334 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~ 334 (435)
..++ +++|.++-.+..+|.+++ .++ +.+.+.... ...+.+.++++..++.+.|+.-.
T Consensus 267 PDi~---~~gK~l~gG~~p~~av~~---~~~----i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~-------- 328 (429)
T d1s0aa_ 267 PDIL---CLGKALTGGTMTLSATLT---TRE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE-------- 328 (429)
T ss_dssp CSEE---EECGGGGTSSSCCEEEEE---CHH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH--------
T ss_pred cccc---ccccccccccccccchhh---HHH----HHhccCCCCCcceeecCCCCCCcccchhhhccccccc--------
Confidence 2233 378998745578888864 787 766665421 13455667777777766664211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC---cEEec-cCCC
Q 013839 335 VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG---RISMA-GVTT 406 (435)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg---Ris~~-~~~~ 406 (435)
-+...++.++.-+++.+.|+++..+..+......|. +.-+.+ +...+...+.++|+.+.+.| ||+.. ..++
T Consensus 329 ~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl-~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~it~ 407 (429)
T d1s0aa_ 329 SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGA-IGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILP 407 (429)
T ss_dssp TCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETT-EEEEEESSCBCHHHHHHHHHHTTEECCCBTTEEEECCCTTCCH
T ss_pred cccccchhhHHHHHHHHHHHHhccCCceEEEeeccc-EEEEEecCcccHHHHHHHHHHCCcEEEecCCEEEEeCCcCCCH
Confidence 123455666666777777766532212222333333 332222 34455444456899999988 66532 2489
Q ss_pred CcHHHHHHHHHHHHHhhh
Q 013839 407 GNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~~ 424 (435)
++|++++++|.+++++..
T Consensus 408 ~eid~~~~~l~~al~e~~ 425 (429)
T d1s0aa_ 408 QQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp HHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999886543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.53 E-value=5.4e-13 Score=126.23 Aligned_cols=175 Identities=10% Similarity=-0.091 Sum_probs=116.3
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
...|.+.+++++... . ++.+++||.|+.++ +.++ +.+||+|++|+-+|......+..+|++++.+++
T Consensus 23 ~~~fE~~~~~~~~~~--------~--~~~~~SgT~Al~la--l~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di 90 (374)
T d1o69a_ 23 VNRFEQSVKDYSKSE--------N--ALALNSATAALHLA--LRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDC 90 (374)
T ss_dssp HHHHHHHHHHHHCCS--------E--EEEESCHHHHHHHH--HHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCcC--------e--EEEeCCHHHHHHHH--HHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEeccc
Confidence 578999999998333 2 33799999999988 6655 779999999999999999999999999999988
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+++....+.+..+..... .++++++++. +..|... ++++|.++|++++++||+|.+........ .
T Consensus 91 -~~~~~~~~~~~~~~~~~~-~~~~~aii~~---~~~G~~~---d~~~i~~~~~~~~i~vIED~a~a~g~~~~----~--- 155 (374)
T d1o69a_ 91 -DETYNIDVDLLKLAIKEC-EKKPKALILT---HLYGNAA---KMDEIVEICKENDIVLIEDAAEALGSFYK----N--- 155 (374)
T ss_dssp -CTTSSBCHHHHHHHHHHC-SSCCCEEEEE---CGGGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEET----T---
T ss_pred -ccccccccccccccchhc-cccccccccc---ccccchh---hhHHHHHHhhccCcchhhhhhhhhcceEC----C---
Confidence 344444444443322221 1567777763 4455443 56799999999999999999954433211 0
Q ss_pred HHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
......++-.++....+|.++..| .|.++ +.+++ +.+.++.+.
T Consensus 156 ~~~G~~gd~~~fSf~~~K~l~tge--GG~i~--tnn~~----~~~~~~~~~ 198 (374)
T d1o69a_ 156 KALGTFGEFGVYSYNGNKIITTSG--GGMLI--GKNKE----KIEKARFYS 198 (374)
T ss_dssp EETTSSSSEEEEECCTTSSSCCSS--CEEEE--ESCHH----HHHHHHHHT
T ss_pred eecCCCCceEEEeccCcccccccc--ceeeh--hhhHH----HHHhhcccc
Confidence 011112333333444468887433 25553 66777 666666543
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.53 E-value=2e-13 Score=133.04 Aligned_cols=312 Identities=13% Similarity=0.072 Sum_probs=163.2
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc-hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCC
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG-TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQI 165 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg-~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~ 165 (435)
+.|..-+.++++.+|+++ |.+ +.. ++.+| ++++.++ +.++++|||+|+++..++......... .+.
T Consensus 62 ~~~~~~i~eae~~~A~~~-ga~-------~a~--f~~~Gtt~~n~a~--i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~ 129 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVY-NAD-------KTY--FVLGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGG 129 (462)
T ss_dssp TTTBTHHHHHHHHHHHHT-TCS-------EEE--EESSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh-CCC-------eEE--EECCchHHHHHHH--HHHhcCCCCeEEecccchHHHHHHHHHHhcC
Confidence 445444678888888887 442 233 55555 5555555 677899999999999998777654443 344
Q ss_pred Ceeeeeec-CCCC--CCc-----ChHhHHHHhhc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 166 PERTYHYY-DPDS--KSL-----DFAALMDDIKN------APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 166 ~~~~v~~~-~~~~--~~~-----d~e~l~~~i~~------~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.++..+.. ++.+ .++ +.+.+...+.+ ...++..+++...+|-.|.+.+ +++|+++|++||+++
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l 206 (462)
T d1c4ka2 130 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYI 206 (462)
T ss_dssp EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEE
Confidence 43333221 2221 122 22222222211 0133433333344566777654 569999999999999
Q ss_pred eeeccCCCccCCCCcccHHHHHHhhh----cCCeEEEEecccccccccCCcccEEEEEecChhHHHH-----HHHHHHHH
Q 013839 232 FFDMAYQGFASGDLDKDAQAIRIFLE----DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAA-----IRSQIQQI 302 (435)
Q Consensus 232 i~Deay~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~-----~~~~l~~~ 302 (435)
++|+++...... .+........... ....++++.|++|.+|.++ .|.++. ..+.. +.. -...+++.
T Consensus 207 ~vD~A~~~~~~~-~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~-~~~~~-~~~~~~~~~~~~~~~~ 281 (462)
T d1c4ka2 207 EFDSAWVGYEQF-IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIH-KKDSH-IKGQLRYCDHKHFNNS 281 (462)
T ss_dssp EEECTTCCGGGS-SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEE-EECGG-GTTSTTCCCHHHHHHH
T ss_pred EEechhhccccc-cCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEE-ecccc-ccccchhhhHHHHHHh
Confidence 999997543321 1011111100000 1134789999999998554 355542 32322 100 00112221
Q ss_pred hh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--------------------
Q 013839 303 AR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN-------------------- 361 (435)
Q Consensus 303 ~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------------------- 361 (435)
.. ....+++......+..+..... ....++..++..++.+.+++.+.+++....
T Consensus 282 ~~~~~t~sp~~~~~asl~~a~~~~~-----~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 356 (462)
T d1c4ka2 282 FNLFMSTSPFYPMYAALDVNAAMQE-----GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDM 356 (462)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHH
T ss_pred hhhcccCCchHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhh
Confidence 11 2223344333333332221110 133455566666677777777776542100
Q ss_pred -----------------cccccc-------------------CcceeEecCCCHHHHHHHhhhccEEEeCCC----cEEe
Q 013839 362 -----------------WEHITN-------------------QLGMFCFSGLTPYQVDRLAKEFHIYMTQDG----RISM 401 (435)
Q Consensus 362 -----------------~~~~~~-------------------~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg----Ris~ 401 (435)
+..... ..+-+.-.|++...+.+.|+++||.+...+ |+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~ 436 (462)
T d1c4ka2 357 ANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLM 436 (462)
T ss_dssp TTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEEC
T ss_pred hcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEe
Confidence 000000 000011114456677667788999775443 7776
Q ss_pred cc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 402 AG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 402 ~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+. .|++++++++++|+++.+...
T Consensus 437 s~~~T~edid~li~aL~ei~r~~~ 460 (462)
T d1c4ka2 437 TPAETPAKMNNLITQLLQLQRLIE 460 (462)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 43 388999999999999866543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.52 E-value=3.4e-13 Score=127.20 Aligned_cols=326 Identities=17% Similarity=0.172 Sum_probs=206.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCC------CCCCccc---HHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLE------SISASVS---TKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------Y~~~~g~---~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
...|+|-..+ -..++.++++......+ ...+ |....-. ..+....++.+++.+.. .+-+
T Consensus 31 ~~~l~LIaSE-------N~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~----~~~a 99 (470)
T d1rv3a_ 31 RVGLELIASE-------NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ----CWGV 99 (470)
T ss_dssp HSSEECCTTC-------CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT----TEEE
T ss_pred HcCceEecCC-------CcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChh----hccc
Confidence 5678887777 24556666666655522 1222 3332222 22233333566665421 1223
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----------hCCCCeeeeeecCCCCCCcChHhHHHHh
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----------DAQIPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----------~~g~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
-+...+|+.|...+ +.+++.|||+|+..++..+++...-. ....+.+.|++ +++++.+|.+++++..
T Consensus 100 nVqp~SGs~An~av--~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v-~~~~~~IDyd~l~~~a 176 (470)
T d1rv3a_ 100 NVQPYSGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEENA 176 (470)
T ss_dssp ECCCSSHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHHH
T ss_pred cccccCCccHHHHH--HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEE-ecccCcccHHHHHHHH
Confidence 34688999998888 89999999999998876655533211 11234667777 4667889999999998
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
.+ .++++|+.....+|-= -+++++.++|.+.|++++.|.++ .++.-++.-++ ++ + .-.++.+|.
T Consensus 177 ~~--~kPklIi~G~S~y~r~-----~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s--Pl----~--~aDvvt~tT 241 (470)
T d1rv3a_ 177 RL--FHPKLIIAGTSCYSRN-----LDYGRLRKIADENGAYLMADMAHISGLVVAGVVPS--PF----E--HCHVVTTTT 241 (470)
T ss_dssp HH--HCCSEEEECCSSCCSC-----CCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC--GG----G--TCSEEEEES
T ss_pred Hh--hCcceEeechhhcccc-----CCHHHHHHHHhccCCeEEecchhhhhhccccccCC--hh----h--eeeeeeeeh
Confidence 75 4578898876666653 25678999999999999999995 33333322111 11 1 236889999
Q ss_pred cccccccCCcccEEEEEecCh--------------hHHHHHHHHHHHHhhccccCCChhHH-HHHHHHhCChhhHHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDS--------------KQAAAIRSQIQQIARAMYGSPPVHGI-LLVATILSDPNLKSLWID 333 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~q-~~~~~~l~~~~l~~~~~~ 333 (435)
.|++ +|-|.|.+. +... + +.+++.+...+...+.+...+ .+.+.++.+. ...
T Consensus 242 HKtl--rGPrgGiI~--~~~~~~~~~~~~~~~~~~~----~~~~i~~avFPg~qggph~~~IAa~Ava~~ea-----~~~ 308 (470)
T d1rv3a_ 242 HKTL--RGCRAGMIF--YRRGVRSVDPKTGKEILYN----LESLINSAVFPGLQGGPHNHAIAGVAVALKQA-----MTP 308 (470)
T ss_dssp SGGG--CCCSCEEEE--EECSBCC-------CCBCC----HHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH-----TSH
T ss_pred hhhc--cCCcceEEE--EccccccccccccchhHHH----HHHHHhhhcCccccccchhhHHHHHHHHHHHh-----cCh
Confidence 9997 688878774 4332 3 667777766544444333333 3333344321 113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeE-ec-----CCCHHHHHHHhhhccEEEe----CC-------
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC-FS-----GLTPYQVDRLAKEFHIYMT----QD------- 396 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~ll~~~gI~i~----pg------- 396 (435)
..+.+.++..++.+.|.+.|.+.|+ .+.....-.++ ++ +++...++++|++.||.+- |+
T Consensus 309 ~fk~Ya~qvv~NAk~La~~L~~~G~----~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~ 384 (470)
T d1rv3a_ 309 EFKEYQRQVVANCRALSAALVELGY----KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRP 384 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc----eeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCC
Confidence 4567778888888999999998885 33332222233 22 5688889998999999884 22
Q ss_pred -C-cEEec-----cCCCCcHHHHHHHHHHHHH
Q 013839 397 -G-RISMA-----GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 397 -g-Ris~~-----~~~~e~i~~~~~~l~~~l~ 421 (435)
| ||+.. ++.++++.++.+-|.++++
T Consensus 385 sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 385 SGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3 88742 3577888888888887774
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=2.3e-12 Score=121.70 Aligned_cols=299 Identities=10% Similarity=-0.004 Sum_probs=176.8
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCC--CEE
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPE--SHI 146 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~g--d~V 146 (435)
.+-...+.+.+..+ . |..-.-...|.+.+++++... .++ .+++|+.|+.++ +.++ +.+| |+|
T Consensus 12 ~~~~~~v~~~l~~~-~--~~~G~~v~~fE~~~~~~~g~k--------~ai--~~~Sgt~Al~~a--l~al~~~~~~~~eV 76 (371)
T d2fnua1 12 KEDKKAVLEVLNSK-Q--LTQGKRSLLFEEALCEFLGVK--------HAL--VFNSATSALLTL--YRNFSEFSADRNEI 76 (371)
T ss_dssp HHHHHHHHHHHTSS-C--CSSSHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHSSCCCTTSCEE
T ss_pred HHHHHHHHHHHcCC-C--ccCCHHHHHHHHHHHHHHCcC--------eEE--EEecHHHHHHHH--HHHhcccCCCCCee
Confidence 34444455555443 2 332234678999999998333 333 799999999888 5554 3344 589
Q ss_pred EEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 013839 147 YFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV 226 (435)
Q Consensus 147 lv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~ 226 (435)
++|.-+|......+...|++++.++. +.+. .++.+++++.+. ++++++++. +..|... ++++|.++|++
T Consensus 77 i~p~~t~~a~~~ai~~~G~~pv~vDi-~~~~-~~~~~~~~~~~~---~~t~avi~v---h~~G~~~---~~~~i~~~~~~ 145 (371)
T d2fnua1 77 ITTPISFVATANMLLESGYTPVFAGI-KNDG-NIDELALEKLIN---ERTKAIVSV---DYAGKSV---EVESVQKLCKK 145 (371)
T ss_dssp EECSSSCTHHHHHHHHTTCEEEECCB-CTTS-SBCGGGSGGGCC---TTEEEEEEE---CGGGCCC---CHHHHHHHHHH
T ss_pred ecccccccccceeeeccCcccccccc-cccc-cccchhhhhhcc---chhhccccc---ccccccc---ccccccccccc
Confidence 99999999999999999999999998 3443 566788877776 788888864 4556654 45689999999
Q ss_pred cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc
Q 013839 227 KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM 306 (435)
Q Consensus 227 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (435)
+++++|+|.+......... . . ....++-.++....+|.++. |. .|.+ ++.+++ +.+.++......
T Consensus 146 ~~i~lIEDaaqa~Ga~~~~-~---~---~G~~g~~~~~Sf~~~K~l~~-g~-GG~i--~t~~~~----~~~~~~~~~~~g 210 (371)
T d2fnua1 146 HSLSFLSDSSHALGSEYQN-K---K---VGGFALASVFSFHAIKPITT-AE-GGAV--VTNDSE----LHEKMKLFRSHG 210 (371)
T ss_dssp HTCEEEEECTTCTTCEETT-E---E---TTSSSSEEEEECCTTSSSCC-SS-CEEE--EESCHH----HHHHHHHHTBTT
T ss_pred cchhhccchhhccCceecc-c---c---CCcccccccccccccccccc-cc-ceEE--Eeechh----hhhhcccccccc
Confidence 9999999999544332110 0 0 11122333444444799874 43 3555 366777 666665543211
Q ss_pred ----------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----
Q 013839 307 ----------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT---- 366 (435)
Q Consensus 307 ----------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 366 (435)
...++.+....+..-|+ .+++..++-+++.+.+.+.|++.+. +....
T Consensus 211 ~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~----------~l~~~~~~R~~~~~~y~~~l~~~~~---~~~~~~~~~ 277 (371)
T d2fnua1 211 MLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK----------KAPFLMQKREEAALTYDRIFKDNPY---FTPLHPLLK 277 (371)
T ss_dssp EEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHTTCSS---EEESGGGCS
T ss_pred cccccccccccccccccccccchhhhhhhhhhh----------hccchhhhhhhhhhhhccccccccc---ccccccccc
Confidence 11133332222222222 2233333333444555666765532 22111
Q ss_pred cCcceeEe---cCC----CHHHHHHHhhhccEEEeCC----------------C----------c-EEe---ccCCCCcH
Q 013839 367 NQLGMFCF---SGL----TPYQVDRLAKEFHIYMTQD----------------G----------R-ISM---AGVTTGNV 409 (435)
Q Consensus 367 ~~~g~~~~---~~~----~~~~~~~ll~~~gI~i~pg----------------g----------R-is~---~~~~~e~i 409 (435)
....++.+ +.. +.+.+.+.|+++||.+.+. + | +++ ..++++++
T Consensus 278 ~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di 357 (371)
T d2fnua1 278 DKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV 357 (371)
T ss_dssp SCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHH
Confidence 11222221 111 2345555557899998743 1 2 333 24588999
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
+++++.|.+++++
T Consensus 358 ~~I~~~i~~~~~~ 370 (371)
T d2fnua1 358 QNIAHSVLKTFES 370 (371)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988764
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.47 E-value=6.9e-12 Score=119.42 Aligned_cols=342 Identities=9% Similarity=-0.010 Sum_probs=179.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcc-cHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASV-STKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++...||+..|.-...-|. -.+++++++.+++...... ...... ..++.+.+...+.+. +.+. ++.+
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~v~--~~~s 104 (404)
T d1z7da1 36 VNDKRYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTIC-SRAFFSVPLGICERYLTNLLGY-------DKVL--MMNT 104 (404)
T ss_dssp TTCCEEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCC-CTTSEEHHHHHHHHHHHHHHTC-------SEEE--EESS
T ss_pred CCCCEEEEccccHHHHhhhc-CcHHHHHHHHHHHHhCCCc-ccccchHHHHHHHHhhhhcccc-------ceee--eecc
Confidence 35688999988753121121 1334555555565532111 111111 112222322223232 2455 7899
Q ss_pred chhHHHHHHHHHHHh-------C-CCCEEEEcCCCChhhHHHHhhCC----CCeeeeeecCCCCC---CcChHhHHHHhh
Q 013839 126 GTGACRLFAEFQRRF-------H-PESHIYFPDPTWSNHHNIWRDAQ----IPERTYHYYDPDSK---SLDFAALMDDIK 190 (435)
Q Consensus 126 g~~a~~~~~~~~~~~-------~-~gd~Vlv~~p~y~~~~~~~~~~g----~~~~~v~~~~~~~~---~~d~e~l~~~i~ 190 (435)
|++|...+..+.... . ....++...-+|.+......... .+....|.. +... .-+.+.++..+.
T Consensus 105 gs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 183 (404)
T d1z7da1 105 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFA-PQFSKVPYDDLEALEEELK 183 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTCHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCC-ccccccccchHHHHHHHhc
Confidence 999998886443321 1 12357777777765433222111 000011100 0000 124566666664
Q ss_pred cCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA 269 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 269 (435)
.++..+|++...+...|... +++.+++|.++|++||+++|.||+..+|+-.+. .+....+ +....++ +++
T Consensus 184 --~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~---~~~~e~~-gv~PDiv---t~g 254 (404)
T d1z7da1 184 --DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHY-NVKPDVI---LLG 254 (404)
T ss_dssp --STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE---EEC
T ss_pred --CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc---ccccccc-CCCCCEE---EEc
Confidence 24567777766666677755 667799999999999999999999887754321 1222222 2222233 689
Q ss_pred ccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 270 KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 270 K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
|.++-.+..+|.+++ +++ +.+.+.......+.+.++++..++.+.|+.-. + .+..+...+.-....+.+
T Consensus 255 K~l~gG~~p~~~v~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~--~--~~~~~~~~~~~~~~~~~l 323 (404)
T d1z7da1 255 KALSGGHYPISAVLA---NDD----IMLVIKPGEHGSTYGGNPLAASICVEALNVLI--N--EKLCENAEKLGGPFLENL 323 (404)
T ss_dssp GGGGTTSSCCEEEEE---CHH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH--H--TTHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccccc---hHH----HHccCCCCCcCcCCCCCcchhhhhhhhhhhhh--c--chhhhhhccchhHHHHHH
Confidence 999833377888864 777 76666554445566777887777777764211 0 012222222223333334
Q ss_pred HHHHHhhCCCCCccccccCcceeEec----CCCHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 350 RQNLEKLGSSLNWEHITNQLGMFCFS----GLTPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
.+.+++.+. +..+...|.++.+. ......+...+.++||.+.+.| ||..+ ..+++++++++++|.+++
T Consensus 324 ~~~~~~~~~---v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 324 KRELKDSKI---VRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp HHHHTTCTT---EEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC---eEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 444444442 22233334333322 1233334333456899998765 67632 248999999999999999
Q ss_pred Hhh
Q 013839 421 RSE 423 (435)
Q Consensus 421 ~~~ 423 (435)
+++
T Consensus 401 k~~ 403 (404)
T d1z7da1 401 KFF 403 (404)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.42 E-value=2.6e-11 Score=116.51 Aligned_cols=344 Identities=10% Similarity=0.048 Sum_probs=180.1
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..||+..|.-...-|. -.+++++++.+++.... ...+.. ....++-+.+++... .. -+++. +++
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~-~~~~~la~~L~~~~~-~~-----~~~v~--f~~ 107 (431)
T d1zoda1 38 ADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLFSEMLS-RPVVDLATRLANITP-PG-----LDRAL--LLS 107 (431)
T ss_dssp TTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCCTTCCC-HHHHHHHHHHHHHSC-TT-----CCEEE--EES
T ss_pred CCCCEEEEcccCHHhhhhcC-CCHHHHHHHHHHHhhcccccccccc-HHHHHHHHHHHHhCC-cc-----cceee--ecc
Confidence 35688999988742121221 22334444444443211 111211 122233333433321 11 24677 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC------------eeeeeecCC---C----CCCc---Ch
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP------------ERTYHYYDP---D----SKSL---DF 182 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~------------~~~v~~~~~---~----~~~~---d~ 182 (435)
+|++|++.+..+.......++|+...-+|.+........+.. ...++.... . .... ++
T Consensus 108 sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (431)
T d1zoda1 108 TGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAEL 187 (431)
T ss_dssp CHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHH
T ss_pred cccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhH
Confidence 999999999866655555588888888887764433222111 111111000 0 0001 12
Q ss_pred HhHHHHhh-cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 183 AALMDDIK-NAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 183 e~l~~~i~-~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+...+. ..+....++++..-+.-.|.. .+++.+++|.++|++||+++|.||+..++...+. ......+ +...
T Consensus 188 ~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~---~~~~~~~-gv~P 263 (431)
T d1zoda1 188 DYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTP 263 (431)
T ss_dssp HHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCC
T ss_pred HHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc---ccccccC-CCCc
Confidence 33333332 223456777776554445554 5888999999999999999999999988765432 1122222 2222
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh--hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA--RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIM 338 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~ 338 (435)
.+ -+++|.++ .|.-++.+++ .++ +........ ...+.+.++++..++.+.|..-. .+ +..++.
T Consensus 264 Di---~~~gK~l~-gG~p~~av~~---~~~----~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~-~~---~~~~~~ 328 (431)
T d1zoda1 264 DI---LTLSKTLG-AGLPLAAIVT---SAA----IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ-RD---GLVARA 328 (431)
T ss_dssp SE---EEECHHHH-TTSSCEEEEE---CHH----HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH-HT---THHHHH
T ss_pred ch---hccccccc-cccccceeee---eec----chhhhhcccccccCCCCCCcchHHHHHHHHHHhh-hh---hhhHHH
Confidence 23 34789988 7788877764 666 555544422 23456677776666666554211 00 112222
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec----CC--------CHHHHHHHhhhccEE----EeCC-C---c
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS----GL--------TPYQVDRLAKEFHIY----MTQD-G---R 398 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~----~~--------~~~~~~~ll~~~gI~----i~pg-g---R 398 (435)
.+.-+...+.+.+.+.+.+. +......|.++... .- .......+ .++|+. ..++ + |
T Consensus 329 ~~~g~~l~~~l~~~~~~~~~---i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~-~~~Gl~~~~~~~~~~~~~i~ 404 (431)
T d1zoda1 329 NVMGDRLRRGLLDLMERFDC---IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITREC-MNLGLSMNIVQLPGMGGVFR 404 (431)
T ss_dssp HHHHHHHHHHHHHHHHHCTT---EEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHH-HHTTEECCEECCTTSCCEEE
T ss_pred HHHHHHHhhhhhhhhhcCCC---eEEEeecceEEEEEEecCCcccCccHHHHHHHHHHH-HHhCcccCeeeecCCCCEEE
Confidence 22222233333444444442 22233444443321 00 12233444 457875 2333 3 5
Q ss_pred EEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 399 ISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 399 is~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
++.. ..+++++++++++|.+++++.
T Consensus 405 l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 405 IAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6532 248899999999999999763
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=1.5e-11 Score=118.96 Aligned_cols=341 Identities=9% Similarity=-0.018 Sum_probs=178.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.-...-|.. .+++++++.+++... ....+. ......+.+.+++.+...... .-+++. ++
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~-~~~~~~~a~~lae~l~~~~~~--~~~~v~--f~ 123 (461)
T d1ohwa_ 50 VDGNRMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALG-ILPPENFVEKLRESLLSVAPK--GMSQLI--TM 123 (461)
T ss_dssp TTSCEEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTT-TSCBTTHHHHHHHTGGGGCCT--TCCEEE--EE
T ss_pred CCCCEEEEcccCHHHHhhcCC-cHHHHHHHHHHHhhhhhccccccc-ccchHHHHHHHHHHHHhhhcc--Ccceee--ee
Confidence 467889999877531212222 223444333333211 011111 111224567777776322111 134666 89
Q ss_pred CCchhHHHHHHHHHHHh--------------------------CCCCEEEEcCCCChhhHHHHhh-CCCC----------
Q 013839 124 LSGTGACRLFAEFQRRF--------------------------HPESHIYFPDPTWSNHHNIWRD-AQIP---------- 166 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~--------------------------~~gd~Vlv~~p~y~~~~~~~~~-~g~~---------- 166 (435)
++|++|++.+..+.... .+...|+....+|.+....... .|-.
T Consensus 124 ~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~ 203 (461)
T d1ohwa_ 124 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF 203 (461)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCC
T ss_pred cchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCccccccccccc
Confidence 99999999986544321 1235788888888765333222 1111
Q ss_pred -eeeeeecCCC-C-----------CCcChHhHHHHh---hcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCc
Q 013839 167 -ERTYHYYDPD-S-----------KSLDFAALMDDI---KNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGH 229 (435)
Q Consensus 167 -~~~v~~~~~~-~-----------~~~d~e~l~~~i---~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~ 229 (435)
....+..... . ...+.+++++.+ .+.++...+|++...+...|.. .+++.+++|.++|++||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gi 283 (461)
T d1ohwa_ 204 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 283 (461)
T ss_dssp CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC
T ss_pred CCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCc
Confidence 0011110000 0 011234444443 3344667788887766666755 578889999999999999
Q ss_pred eeeeeccCCCccCCCCcccHHHHHHhhhcC-CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcccc
Q 013839 230 FPFFDMAYQGFASGDLDKDAQAIRIFLEDE-HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG 308 (435)
Q Consensus 230 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (435)
++|.||+..++...+. .+....+ +.. .-+++ +++|.++ . |+.. . ... + ..........+.
T Consensus 284 llI~DEV~tG~gRtG~---~~~~e~~-gi~~~PDiv--~~gK~l~-~----g~~~--~-~~~----~-~~~~~~~~~~T~ 344 (461)
T d1ohwa_ 284 AFLVDEVQTGGGSTGK---FWAHEHW-GLDDPADVM--TFSKKMM-T----GGFF--H-KEE----F-RPNAPYRIFNTW 344 (461)
T ss_dssp EEEEECTTTCSSTTSS---SSGGGGG-CCSSCCSEE--EECGGGS-S----EEEE--E-CGG----G-SCSSTTSSCCSC
T ss_pred ceeccccccccccccc---ccccccc-ccccCchhh--hhhhccc-c----cccc--c-ccc----c-cccccccccccc
Confidence 9999999988865431 1222222 111 12233 5788875 2 4443 2 332 2 111111223445
Q ss_pred CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCC-CH----HH
Q 013839 309 SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL-TP----YQ 381 (435)
Q Consensus 309 ~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~-~~----~~ 381 (435)
+.++++..++.+.|+.-. + +...++.++..++|.+.|+++. .+..+..+...|- +.-+.+ +. +.
T Consensus 345 ~g~p~~~aaa~a~l~~i~------~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl-~~~ie~~~~~~~~~i 415 (461)
T d1ohwa_ 345 LGDPSKNLLLAEVINIIK------R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT-FCSFDTPDESIRNKL 415 (461)
T ss_dssp SSCHHHHHHHHHHHHHHH------H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT-EEEEECSSHHHHHHH
T ss_pred ccccccchhhcccchhhh------h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE-EEEEEcCCHHHHHHH
Confidence 566676666666664211 1 1233444445555555555431 1111222333333 333433 22 23
Q ss_pred HHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 382 VDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 382 ~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
+..+ .++|+.+.+.| ||... ..+++++++++++|.+++.+
T Consensus 416 ~~~~-~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 416 ISIA-RNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHH-HHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 3544 46899998855 66532 34899999999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.31 E-value=4.1e-12 Score=119.40 Aligned_cols=286 Identities=10% Similarity=0.016 Sum_probs=151.6
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchh-HHHHHHHHHHHhCCCCEEEEcCCCCh--hhHHHHhhCCCCeeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG-ACRLFAEFQRRFHPESHIYFPDPTWS--NHHNIWRDAQIPERTYH 171 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~-a~~~~~~~~~~~~~gd~Vlv~~p~y~--~~~~~~~~~g~~~~~v~ 171 (435)
.+.|+.+++++...+ ..+++ ++.|++. ++..+ +..++.+|+++++..-... .+..+.+..|.++..+.
T Consensus 51 ~~~r~~l~~l~~~~~-----~~~i~--~~~gs~t~~~ea~--~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~ 121 (361)
T d2c0ra1 51 NEAQARLLALLGNPT-----GYKVL--FIQGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAAS 121 (361)
T ss_dssp HHHHHHHHHHTTCCS-----SEEEE--EESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHhCCCC-----CCEEE--EECCCchHHHHHH--HhccccCCCceEEEeechhhhhhhhhhhhcCceeeeec
Confidence 456666766663322 12444 5555544 43443 5567788898876654332 23445667787777766
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. +.....+++.+++.+. ..+...+ +|.||...+.. ++.++|+++|+++++|.+ +.+...+.+
T Consensus 122 ~--~~~~~~~~~~~~~~~~---~~~~~~v----~~~tg~~~~~~---~i~~~~~~~~al~~vDav-ss~g~~~id----- 183 (361)
T d2c0ra1 122 S--EASNYMTLPKLQEIQL---QDNAAYL----HLTSNETIEGA---QFKAFPDTGSVPLIGDMS-SDILSRPFD----- 183 (361)
T ss_dssp C--GGGTTCSCCCGGGCCC---CTTEEEE----EEESEETTTTE---ECSSCCCCTTSCEEEECT-TTTTSSCCC-----
T ss_pred c--ccccccchhhhhhhcc---cCcceEE----EEecccceecc---eEEEeeccCCceEEEEee-ccccccccc-----
Confidence 5 3334677777777665 3333333 67888887765 677889999999999999 444332221
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHH--------HHHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAA--------AIRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
..+..+.+.|.+|.++++|. +++++ . .+...+ ............ ....+.....++...+.
T Consensus 184 ------~~~~di~~~s~~k~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (361)
T d2c0ra1 184 ------LNQFGLVYAGAQKNLGPSGV--TVVIV-R-EDLVAESPKHLPTMLRYDTYVKNNSL-YNTPPSFGIYMVNEVLK 252 (361)
T ss_dssp ------GGGCSEEEEETTTTTCCSSC--EEEEE-E-GGGSSSCCTTSCGGGCHHHHHHTTTC-SSCCCHHHHHHHHHHHH
T ss_pred ------cccceeEEEecccccccccC--cEEEE-E-hHHhhhCccccccccccccccccccc-cccccceeeehhhhHHH
Confidence 11234556678999987773 23322 2 332100 001112221221 12222222222212111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc---ccCcceeEec--CCCHHHHHHHhhhccEEEeCC--
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI---TNQLGMFCFS--GLTPYQVDRLAKEFHIYMTQD-- 396 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~g~~~~~--~~~~~~~~~ll~~~gI~i~pg-- 396 (435)
... .........++.+..+..+................ ......-..+ +.+.+.+...|+++||.+.+|
T Consensus 253 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~ 328 (361)
T d2c0ra1 253 WIE----ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHR 328 (361)
T ss_dssp HHH----HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCT
T ss_pred hhh----hccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCC
Confidence 000 00122334444445555555554443211001111 1111111111 224456667778999999987
Q ss_pred --C--cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 397 --G--RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 --g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
| |||+.. .+.|+++++++.|+++.++
T Consensus 329 ~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 329 SVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 2 999754 3789999999999997665
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.31 E-value=7.5e-11 Score=114.12 Aligned_cols=333 Identities=12% Similarity=0.059 Sum_probs=194.6
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc---CCCCcc--ccCCCeeeEecCCchhHHHHHHHHHHH--h
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY---GKDSDV--VKEGRSAGVQALSGTGACRLFAEFQRR--F 140 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~---~~~~~~--~~~~~v~~~~t~gg~~a~~~~~~~~~~--~ 140 (435)
.+...+.+.+..+.+.....|.......++-+.+.+|+. +..... -...+-.+++|.||++|+..++....- +
T Consensus 85 ~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~ 164 (476)
T d1js3a_ 85 SYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVV 164 (476)
T ss_dssp CHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHH
Confidence 344455555555554434445555555667777777762 221100 001233455899999998877522111 1
Q ss_pred ------CCC---------CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeC
Q 013839 141 ------HPE---------SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHP 202 (435)
Q Consensus 141 ------~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~ 202 (435)
.+| -.|++++-++......+...|..+..+|+ .+++.+|++.|++.+++. ...+.+|+.+
T Consensus 165 ~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~--d~~~~md~~~L~~~i~~~~~~g~~p~~Vvat 242 (476)
T d1js3a_ 165 RRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFVVAT 242 (476)
T ss_dssp HHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEecc--CCCCCcCHHHHHHHHHHHHhcCCCcEEEeec
Confidence 111 14677777888888888889999988987 446899999999999753 3446778888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
..++.||.+= ++++|.++|++|++|+.+|.+|.++..... ..... +.+...-+-+..+++|.++.|. .+|.+
T Consensus 243 aGtt~~G~iD---pl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~--~~~~~--~~gi~~aDSit~d~HK~l~~P~-~~g~~ 314 (476)
T d1js3a_ 243 LGTTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHL--LNGVEFADSFNFNPHKWLLVNF-DCSAM 314 (476)
T ss_dssp BSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGG--GTTGGGCSEEEECHHHHSSCCS-SCEEE
T ss_pred CCCccceeec---cHHHHHHHHHhcCcEEEEecccchhhhhhc--chhhh--hcCCcccceeeecCccccccCC-cceee
Confidence 8899999874 466999999999999999999877553211 11111 1111223455678899988664 45666
Q ss_pred EEEecChhHHHHHHH----HHHHH----------hhcccc---CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 283 SILCVDSKQAAAIRS----QIQQI----------ARAMYG---SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~----~l~~~----------~~~~~~---~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
. ..++........ .+... ...... ....+..+++...+.. +..++..++..+.
T Consensus 315 l--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~--------~g~~~~i~~~~~l 384 (476)
T d1js3a_ 315 W--VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV--------KGLQAYIRKHVQL 384 (476)
T ss_dssp E--ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred c--ccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhH--------hHHHHHHHHHHHH
Confidence 4 445442111000 00000 000000 1112222233233321 5567777778888
Q ss_pred HHHHHHHHHhhCCCCCcccc-ccCcceeEe--cCCC---HHHHHHHhhhccEEEeCC---C----cEEecc--CCCCcHH
Q 013839 346 RTTLRQNLEKLGSSLNWEHI-TNQLGMFCF--SGLT---PYQVDRLAKEFHIYMTQD---G----RISMAG--VTTGNVN 410 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~--~~~~---~~~~~~ll~~~gI~i~pg---g----Ris~~~--~~~e~i~ 410 (435)
++++.+.+++.+. ++.. ++.-+...| .+.+ .+..+++.++-.+.+.+. | |+++++ .++++++
T Consensus 385 A~~l~~~l~~~~~---fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did 461 (476)
T d1js3a_ 385 SHEFEAFVLQDPR---FEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVR 461 (476)
T ss_dssp HHHHHHHHHHCTT---EEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHhcCCC---eEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHH
Confidence 8999999988753 5444 444444333 2332 334465544333555443 4 988764 3567899
Q ss_pred HHHHHHHHHHHhh
Q 013839 411 YLANAIHEVTRSE 423 (435)
Q Consensus 411 ~~~~~l~~~l~~~ 423 (435)
.+++.|+++.+++
T Consensus 462 ~~~~~i~~~a~~l 474 (476)
T d1js3a_ 462 LAWEHIRGLAAEL 474 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887764
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=6.3e-11 Score=110.73 Aligned_cols=290 Identities=12% Similarity=-0.021 Sum_probs=151.7
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYH 171 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~ 171 (435)
+.+.|+.+++++...+ +..|+ ++.|++++...+ ....+..+++.+++..-.+... ....+..|...+.+.
T Consensus 48 ~~~~r~~l~~l~~~~~-----~~~v~--~~~gs~t~~~~a-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1bjna_ 48 AEEAEKDFRDLLNVPS-----NYKVL--FCHGGGRGQFAA-VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHH-HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHhCCCC-----CCEEE--EECCchHHHHhh-hhhcccccccccceecccchhhhhHHHHhhcCccceeec
Confidence 4677888888884432 12445 666666555444 2444566778888877655433 334445555554444
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. ..+...+.+++++.+. .+++++++.+.+|-||...+.. ++ .++.+++.+++|.+. .+...+.
T Consensus 120 ~--~~~~~~~~~~~~~~~~---~~~~~v~v~~~~~~t~~~~~~~---~i--~~~~~~~~v~vDa~~-~~~~~~v------ 182 (360)
T d1bjna_ 120 K--VTVDGLRAVKPMREWQ---LSDNAAYMHYCPNETIDGIAID---ET--PDFGADVVVAADFSS-TILSRPI------ 182 (360)
T ss_dssp E--EEETTEEEECCGGGCC---CCSSCSCEEECSEETTTTEECC---CC--CCCCTTCCEEEECTT-TTTSSCC------
T ss_pred c--ccCCCcchhhhhhhhc---cCCceeEEEecccccccCcccc---ce--ecccccceeeeeeec-cccceee------
Confidence 3 2223455566655555 5556666667789898876544 22 356788999999883 3333222
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHH--------HHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAA--------IRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
+..+..+.+.|.+|.++.++. .|.++ . .+...+. .......... .....+......+.....
T Consensus 183 -----d~~~~dv~~~ss~k~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (360)
T d1bjna_ 183 -----DVSRYGVIYAGAQKNIGPAGL-TIVIV--R-EDLLGKANIACPSILDYSILNDNGS-MFNTPPTFAWYLSGLVFK 252 (360)
T ss_dssp -----CGGGCSEEEEETTTTTSSTTC-EEEEE--E-GGGCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHH
T ss_pred -----eeccceeEEEEcccccccCCC-ceeEe--e-ehhhhhccccCCcchhhHHHHhhhh-hccccccchHHHHHHHHH
Confidence 112345677888888875543 33332 2 3321000 0011111111 112222222222211111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc--ccccCcc-eeEec-CCCHHHHHHHhhhccEEEeCC---
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE--HITNQLG-MFCFS-GLTPYQVDRLAKEFHIYMTQD--- 396 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~g-~~~~~-~~~~~~~~~ll~~~gI~i~pg--- 396 (435)
.. ......+...++.++....+.+.+...+...... .....+. .|... +.+.+.+..+++++||.+..|
T Consensus 253 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~ 328 (360)
T d1bjna_ 253 WL----KANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRV 328 (360)
T ss_dssp HH----HHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT
T ss_pred HH----hhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCc
Confidence 00 0012233444555555555555555544210000 0111111 12222 345666666678899999887
Q ss_pred -C--cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 397 -G--RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 -g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
| |+|+.. .+.|+++++++.|+++.++
T Consensus 329 ~g~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 329 VGGMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3 999855 3789999999999987653
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.01 E-value=1.7e-09 Score=100.90 Aligned_cols=151 Identities=7% Similarity=-0.122 Sum_probs=85.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYH 171 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~ 171 (435)
+.+.|+.+++++...+ +..++ ++.|++++...+ ....+..+++.|++....+... ...+...+...+...
T Consensus 50 ~~~~r~~l~~l~~~~~-----~~~i~--~~~gt~~~~~~~-~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 121 (360)
T d1w23a_ 50 HEQAQNLLRELLQIPN-----DYQIL--FLQGGASLQFTM-LPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHH-HHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CCEEE--EeCCcHHHHHHH-HHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeec
Confidence 3567888888884322 12344 555555554433 3444566788888877654433 233445554444443
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
. +.....+++.+++... ..+...+ +|-||...+.+ +|.++|+++|+++|+|.+- .+.-.+.+
T Consensus 122 ~--~~~~~~~~~~~~~~~~---~~~~~~~----~~~tg~~~~~~---~i~~~~~~~g~l~ivDavq-s~g~~~id----- 183 (360)
T d1w23a_ 122 T--KANSYQSIPDFSEFQL---NENDAYL----HITSNNTIYGT---QYQNFPEINHAPLIADMSS-DILSRPLK----- 183 (360)
T ss_dssp C--GGGTSCSCCCGGGCCC---CTTEEEE----EEESEETTTTE---ECSSCCCCCSSCEEEECTT-TTTSSCCC-----
T ss_pred c--ccccccchhhhhhccc---cccccee----EecCCccccce---eeeeccccceeeEEeeccc-cccccccc-----
Confidence 3 2222334445444333 2333322 57788887765 7889999999999999994 33322222
Q ss_pred HHHhhhcCCeEEEEecccccccccC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
..+..+.+.+++|..+++|
T Consensus 184 ------~~~~~vd~~~~~~~k~~~~ 202 (360)
T d1w23a_ 184 ------VNQFGMIYAGAQKNLGPSG 202 (360)
T ss_dssp ------GGGCSEEEEETTTTTSCTT
T ss_pred ------cccccceEEeeccccccCC
Confidence 1122344556777776555
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=1.5e-06 Score=81.56 Aligned_cols=285 Identities=12% Similarity=0.005 Sum_probs=155.7
Q ss_pred CCCC--CcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH--
Q 013839 87 ESIS--ASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-- 159 (435)
Q Consensus 87 ~Y~~--~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-- 159 (435)
.|.| ++|.-++.-.+..++ .|.+.. +.. .-.|+++....+....+ ....+++++..-.++.+...
T Consensus 97 PyqpE~sQG~Lq~l~e~q~~l~eltGmd~~-----n~s--~~~ga~a~~~~~~~~~~-~~~~~~~~v~~~~~p~~~~v~~ 168 (437)
T d1wyua1 97 PYQPEVSQGVLQATFEYQTMIAELAGLEIA-----NAS--MYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLR 168 (437)
T ss_dssp CCSGGGCHHHHHHHHHHHHHHHHHHTSSEE-----CSC--BSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhhCCCcc-----ccC--chHHHHHHHHHHHHHHh-hhcccccccccccChHHhhhhh
Confidence 3555 566544444444443 355432 222 34455655554432222 33568899999888776554
Q ss_pred --HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC
Q 013839 160 --WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY 237 (435)
Q Consensus 160 --~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay 237 (435)
+...|++++.++.. + ++.+.++ +. +++.++++.+||. .|.. ++++++++++++.|.+++.|..-
T Consensus 169 t~a~~~g~~vv~v~~~-~--~~~~~~~----~~---~~~Aavmi~~Pnt-~G~~---ed~~~i~~~~h~~G~l~~~~ad~ 234 (437)
T d1wyua1 169 AYLEAVGAKLLTLPLE-G--GRTPLPE----VG---EEVGAVVVQNPNF-LGAL---EDLGPFAEAAHGAGALFVAVADP 234 (437)
T ss_dssp HHHHHTTCEEEEECCB-T--TBCCCCC----CC---TTEEEEEEESSCT-TSBC---CCHHHHHHHHHHTTCEEEEECCT
T ss_pred hhcccceeeEEeeecc-c--ccchhhh----hc---cceeEEEEccccc-cccc---cchHHHHHHhhhccceEEeeech
Confidence 45789999998863 2 2333333 33 6788999988844 6766 35789999999999987776432
Q ss_pred CCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc----ccCCcccEEEEEecChhHHHHHHHHH--------------
Q 013839 238 QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG----LYGHRVGCLSILCVDSKQAAAIRSQI-------------- 299 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g----~~G~RvG~~~~~~~~~~~~~~~~~~l-------------- 299 (435)
+..... ..+.. . .-+|++++ +|.|| ..|-..|++.+ .++ +...+
T Consensus 235 --~al~~l-~~Pg~------~-GaDi~~g~-~q~fg~p~g~GGP~~G~~a~---~~~----l~r~lPgrivg~s~d~~G~ 296 (437)
T d1wyua1 235 --LSLGVL-KPPGA------Y-GADIAVGD-GQSLGLPMGFGGPHFGFLAT---KKA----FVRQLPGRLVSETVDVEGR 296 (437)
T ss_dssp --TGGGTB-CCHHH------H-TCSEEEEE-CTTTTCCCGGGCSCCEEEEE---CGG----GGGGCCSCCEEEEEBTTSC
T ss_pred --hhhhcc-ccccc------c-ccceEeec-cceeccccCCCcCccccccc---cch----hhccccccccccccccCCc
Confidence 222211 11111 1 23455665 55543 33555677753 554 32211
Q ss_pred --------------HHHhhccccCC-ChhHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Q 013839 300 --------------QQIARAMYGSP-PVHGILLVATILS-DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE 363 (435)
Q Consensus 300 --------------~~~~~~~~~~~-~~~~q~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 363 (435)
++..-....+. ..+....+...+. .+ .+.+++..++...+..++.+.|.+++. +.
T Consensus 297 ~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG------~~GL~~ia~~a~~~A~yl~~~L~~~~g---~~ 367 (437)
T d1wyua1 297 RGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG------PEGLREVALKSVEMAHKLHALLLEVPG---VR 367 (437)
T ss_dssp EEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---CE
T ss_pred ccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcC------cccHHHHHHHHHHHHHHHHHHhhhcCC---ee
Confidence 11111111111 2222222222222 22 166888888899999999999988742 33
Q ss_pred ccccCcceeEe---cCCCHHHHHHHhhhccEEEe----C---CC--cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 364 HITNQLGMFCF---SGLTPYQVDRLAKEFHIYMT----Q---DG--RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 364 ~~~~~~g~~~~---~~~~~~~~~~ll~~~gI~i~----p---gg--Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
...+..-|.-| .+.+.+.+.+.|.++||... + .+ .++++- .+.++|++++++|++++
T Consensus 368 ~~~~~~~f~ef~v~~~~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 368 PFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ECSCSSBCSEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCeeeEEEEECCCCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 33222222112 24566666444456888531 1 12 555542 26788999999888763
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=1e-05 Score=76.78 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=137.7
Q ss_pred EEEEcCCCCh-hhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 013839 145 HIYFPDPTWS-NHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQ 223 (435)
Q Consensus 145 ~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~ 223 (435)
.+.+..+.+. .........+.+++.++. ......|.+.+..... ..+.++++.+|++..+.. ++.++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~a~v~v~~p~~~g~~e---~~~~~~~~~ 227 (471)
T d1wyub1 156 RVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFE---RRILEISRL 227 (471)
T ss_dssp CEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCC---TTHHHHHHH
T ss_pred ccccCCcccccceeeeeecccceeecccc--cccccccchhhhhhhh---ccccceeeccCCCccccc---chhhhhHHH
Confidence 3444445444 444455566666777765 3456778888887776 677888888887766543 345688899
Q ss_pred HHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc----cccCCcccEEEEEecChhHHHHHHHHH
Q 013839 224 FKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM----GLYGHRVGCLSILCVDSKQAAAIRSQI 299 (435)
Q Consensus 224 ~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~----g~~G~RvG~~~~~~~~~~~~~~~~~~l 299 (435)
+++++..+++|-+-...... + ..+ + +.+..++++ +.++.+ +..|.-+|++. + .++ +...+
T Consensus 228 ~h~~g~~~~~~~~~~~~~~~-l-~~p-~-----~~g~div~v-g~~q~~G~P~~~GGP~~G~~a--~-~~~----~~R~~ 291 (471)
T d1wyub1 228 CKEAGVQLYYDGANLNAIMG-W-ARP-G-----DMGFDVVHL-NLHKTFTVPHGGGGPGSGPVG--V-KAH----LAPYL 291 (471)
T ss_dssp HHHHTCEEEEEGGGGGGTTT-T-CCH-H-----HHTCSEEEC-CTTTTTCCCCTTSCCCCCCEE--E-CGG----GGGGC
T ss_pred HHhccccccccccchhhhhh-c-ccc-C-----ccccccccc-cccccccccccccccccccee--e-hhh----hhccC
Confidence 99998877777653222211 1 111 1 122334433 344443 44466678885 3 666 43322
Q ss_pred H------------------HH-hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 300 Q------------------QI-ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 300 ~------------------~~-~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
- ++ .+-...+...+...++...+..-+ .+.+++..+...++..++.+.|+..|.
T Consensus 292 PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG-----~~GL~elA~~~~~~A~Yla~~L~~~G~-- 364 (471)
T d1wyub1 292 PVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGLKKAAALAVLNARYLKELLKEKGY-- 364 (471)
T ss_dssp CSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHHHHHHHhhcCc--
Confidence 1 00 000111122333333333333211 267888888999999999999987663
Q ss_pred CccccccCcceeE-ec-----CCCHHHH-HHHhhhccEEEe----CC----C-cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 361 NWEHITNQLGMFC-FS-----GLTPYQV-DRLAKEFHIYMT----QD----G-RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 361 ~~~~~~~~~g~~~-~~-----~~~~~~~-~~ll~~~gI~i~----pg----g-Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+... .+.+|- |+ +++.+.+ ++|+ ++|+.-. |. + -++++-. |.++|+.++++|++++++.
T Consensus 365 --~~~~-~~~ff~EFvv~~~~~~~~~~i~k~L~-~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 365 --RVPY-DGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp --BCSS-CSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred --eecc-CcceeeEEeecCCCCCCHHHHHHHHH-HcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 3322 222211 22 3455555 5555 5788542 11 1 4455432 6788999999999999865
Q ss_pred h
Q 013839 424 Q 424 (435)
Q Consensus 424 ~ 424 (435)
.
T Consensus 441 ~ 441 (471)
T d1wyub1 441 K 441 (471)
T ss_dssp H
T ss_pred H
Confidence 4
|