Citrus Sinensis ID: 013850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccHHHHHHccccccccccEEEEcccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHcccEEEEEccccHHHHHccccccEEcccccccccccccccccccccHHHHHHHccccccccccccccccEEEEEccccccccccHHHHccHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEccHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEcccccccccccccHHHcHHcccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccccccccccccHHHHHHHHHHHcccccEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEHHHHHHHHHHccccccEEEEEEEEEcccccccccccccHHHHHHHccccccccccccccccEEEEEcccccccccccEEEEcHHHHHHHHHcccccHHccccccEEEEEHHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEcccccHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEcccccccccEEEEcccccccccccccccEccccEEEEEcccccccccccccEEEEEEcccHcccccccHHHHHHHHHccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
meksgygrdgiyrslrpplvlpsdpsfsmvhflfrnsasyssklalidadsdeslsfsQFKSIVIKVSHsfrhlgitkkdvvlifapnsihfpiCFLGVIAIGAiastanpvyTVSELskqvkdsnpklvitvpelwdkvkdlnlpavllgskdkvsssglisrsskivSFHDLIelsgsvtdipdvsvkqTDAAALLYssgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDqlqkgncvvsmGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLvrkfdisslklvgsgaaplgkELMEDCqknipgatifqgygmtetcapislenplvgvrrsgsagtLVAGVEAQIVsvdtlkplppnqlgeiwvrgpnvtpgiVYINFFVFTLFLWgcehtdsfirgkdqqtd
Flexible Loop (DISEMBL)
meksgygrdgiyrslrpplvlpSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSElskqvkdsnpkLVITVPELWDKVKDLNLPAVllgskdkvsssglisrsskIVSFHDLIELSgsvtdipdvSVKQTDAAALLYSsgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDsfirgkdqqtd
Low Complexity Region (SEG)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDkvsssglisrsskivsFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Disordered region (IsUnstruct)
***********Y******LVLP*DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK*******LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFI********
Disordered Region (DISOPRED)
******G*DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKD****
Disordered Region (DISEMBL)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK**********RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Disordered Region (DISPRO)
*****YGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.931	0.744	0.640	1e-153
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.940	0.740	0.478	1e-101
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.873	0.697	0.376	1e-64
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.875	0.709	0.358	2e-64
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.885	0.706	0.374	3e-64
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.894	0.712	0.364	3e-64
P31687	562	4-coumarate--CoA ligase 2	no	no	0.834	0.645	0.4	4e-64
Q42524	561	4-coumarate--CoA ligase 1	no	no	0.908	0.704	0.369	4e-64
Q84P26	550	4-coumarate--CoA ligase-l	no	no	0.889	0.703	0.365	5e-64
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.873	0.694	0.371	5e-64

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/409 (64%), Positives = 326/409 (79%), Gaps = 4/409 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+  G  Y+N
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG--YLN 405

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/416 (47%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 4   SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNS-ASYSSKLALIDADSDESLSFSQFKS 62
           +GYG DG+YRSLRPP  + SDP  S+   L R + A  S+      A    +L+F++ +S
Sbjct: 9   AGYGADGVYRSLRPPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRS 68

Query: 63  IVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
            V+  + +     G+   D VL+ APN + +P+CF  V A+GA+ +T NP YT  E++KQ
Sbjct: 69  AVLSTAVALSSRAGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQ 128

Query: 122 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181
           V D+  KLVIT+  L  K+  L LP +LL      +++ L   ++  V+ +  +      
Sbjct: 129 VSDARAKLVITISALVPKIAGLRLPVILLDDDANAAAASLPPDAT--VTLYTNLVAGVKE 186

Query: 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241
            D     +KQ+D AALLYSSGTTG SKGVILTH+NFIAA+ M+++ Q+   E  +V LC 
Sbjct: 187 ADYRRPPIKQSDTAALLYSSGTTGDSKGVILTHRNFIAAARMVTSDQDERREGPNVFLCF 246

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LPMFH+FGLSVI Y QL +GN +++M +FDI   + A++++RVT  + VPP+I+ALAK+ 
Sbjct: 247 LPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRHRVTHLFCVPPVIIALAKHG 306

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG-V 360
              K+D+SSLK +GSGAAPLGK++ME   K  P + I QGYGMTETC  ISLE P  G  
Sbjct: 307 KAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGYGMTETCGIISLEYPEKGQA 366

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF 416
           R  GS GTLV+GVEA+IV + TLK LPPNQ+GEI VRGPNV  G  Y N    T F
Sbjct: 367 REFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNVMQG--YFNNVQATEF 420

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  247 bits (631), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 232/414 (56%), Gaps = 34/414 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + ++S+  LID  +D   ++++ +    KV+
Sbjct: 12  DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVA 69

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 70  VGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAK 129

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +VIT      KVKD  +       ++ +    + S     V F +LI+      +IPDV 
Sbjct: 130 IVITQACFAGKVKDYAI-------ENDLKVICVDSAPEGCVHFSELIQ--SDEHEIPDVK 180

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V++CV
Sbjct: 181 IQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSDDVLMCV 235

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+AK+ 
Sbjct: 236 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSP 295

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPISLEN 355
           LV  +D+SS++ V SGAAPLGKEL +  +   P A + QGYGMTE       C   + E 
Sbjct: 296 LVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEP 355

Query: 356 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +  G  Y+N
Sbjct: 356 FDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKG--YLN 404

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 228/413 (55%), Gaps = 32/413 (7%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           + +YRS  P + + SD    +  + F   A ++ +  LID  +D +  FS+ + I  KV+
Sbjct: 9   EHLYRSKLPDIEI-SD-HLPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVA 66

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LG+ +  VV++  PN I F   F+G    GAI +TANP Y   E++KQ K +  +
Sbjct: 67  AGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGAR 126

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +++T+    +K+ DL    VL+ + D     G           H  +      T  P V 
Sbjct: 127 IIVTLAAYVEKLADLQSHDVLVITIDDAPKEG---------CQHISVLTEADETQCPAVK 177

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           +   D  AL YSSGTTG+ KGV+LTHK  ++     S  Q++ GE        D V+LCV
Sbjct: 178 IHPDDVVALPYSSGTTGLPKGVMLTHKGLVS-----SVAQQVDGENPNLYFHSDDVILCV 232

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G   + M KF++   L  I+KY+VTV  +VPPI+L + K+ 
Sbjct: 233 LPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSP 292

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL-----ENP 356
           +V ++D+SS++++ SGAAPLGKEL +  ++  P A   QGYGMTE    +++     +NP
Sbjct: 293 IVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNP 352

Query: 357 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
                +SGS GT+V   + +I+  +T + LP NQ GEI +RGP +  G  YIN
Sbjct: 353 F--PVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKG--YIN 401

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  246 bits (628), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 229/409 (55%), Gaps = 24/409 (5%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + ++S+  LID  +D   ++++ +    KV+
Sbjct: 12  DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVA 69

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 70  VGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAK 129

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +VIT      KVKD  +       ++ +    + S     V F +LI+      +IPDV 
Sbjct: 130 IVITQACFAGKVKDYAI-------ENDLKVICVDSVPEGCVHFSELIQ--SDEHEIPDVK 180

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFH 246
           ++  D  AL YSSGTTG+ KGV+LTHK  +   A  +   +  L    D V++CVLP+FH
Sbjct: 181 IQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFH 240

Query: 247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF 306
           ++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+AK+ LV  +
Sbjct: 241 IYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVDNY 300

Query: 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPISLENPLVGV 360
           D+SS++ V SGAAPLGKEL +  +   P A + QGYGMTE       C   + E   +  
Sbjct: 301 DLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDI-- 358

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +  G  Y+N
Sbjct: 359 -KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKG--YLN 404

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  246 bits (628), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 235/409 (57%), Gaps = 20/409 (4%)

Query: 3   KSGY-GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
           +SG+   +  + S R P+ LP +PS  +  F+  +S ++  ++A IDA + ++L+F++  
Sbjct: 7   RSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFI--SSQAHRGRIAFIDASTGQNLTFTELW 64

Query: 62  SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
             V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T +E++KQ
Sbjct: 65  RAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQ 124

Query: 122 VKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179
           +KDSNP L  T  +L  K+      LP VL+  +++V S G + R  +++      E SG
Sbjct: 125 IKDSNPVLAFTTSQLLPKISAAAKKLPIVLM-DEERVDSVGDVRRLVEMMK----KEPSG 179

Query: 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD--HV 237
           +        V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G  D    
Sbjct: 180 NRV---KERVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGSDDGEQR 233

Query: 238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 297
            +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VPPI++A+
Sbjct: 234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query: 298 --AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 355
               + +  K+D+SS+  V  G APL KE+ E   +  P   I QGYG+TE+    +  +
Sbjct: 294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query: 356 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            +   RR G+AG L A +E +IV   T + L P Q GE+W++GP++  G
Sbjct: 354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKG 402

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  245 bits (626), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 156/390 (40%), Positives = 226/390 (57%), Gaps = 27/390 (6%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
           + F+N + ++ +  LI   + ++ +++    I  K++    +LGI K DVV+I   NS  
Sbjct: 45  YCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSAD 104

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F   FL +  IGA+A+TANP YT  E+ KQ   S  KL+IT     DK++  N     LG
Sbjct: 105 FVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLR--NHDGAKLG 162

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
              KV +  +       + F  L E + S  D+P+V +   DA A+ +SSGTTG+ KGVI
Sbjct: 163 EDFKVVT--VDDPPENCLHFSVLSEANES--DVPEVEIHPDDAVAMPFSSGTTGLPKGVI 218

Query: 212 LTHKNFIAASLMISAHQELVGE-------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           LTHK     SL  S  Q++ GE        + V+LCVLP+FH+F L+ +L   L+ G+ V
Sbjct: 219 LTHK-----SLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAV 273

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           + M KF+I   L  I+++RV+V  VVPP++LALAKN +V  FD+SS++LV SGAAPLGKE
Sbjct: 274 LLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKE 333

Query: 325 LMEDCQKNIPGATIFQGYGMTETCAPISL-----ENPLVGVRRSGSAGTLVAGVEAQIVS 379
           L E  +  +P A + QGYGMTE    +S+     + P     +SGS GT+V   E ++V 
Sbjct: 334 LEEALRNRMPQAVLGQGYGMTEAGPVLSMCLGFAKQPF--QTKSGSCGTVVRNAELKVVD 391

Query: 380 VDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +T + L  NQ GEI +RG  +  G  Y+N
Sbjct: 392 PETGRSLGYNQPGEICIRGQQIMKG--YLN 419

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42524|4CL1_ARATH 4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1

 Score =  245 bits (626), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 241/425 (56%), Gaps = 30/425 (7%)

Query: 1   MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
           MEK  +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct: 12  MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 69

Query: 59  QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
               I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct: 70  DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 129

Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
           +KQ K SN KL+IT     DK+K L N   V++   D   S   +      + F +L + 
Sbjct: 130 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNES---VPIPEGCLRFTELTQS 186

Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
           +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE   
Sbjct: 187 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 241

Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +
Sbjct: 242 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 301

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
           VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE   
Sbjct: 302 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 361

Query: 350 PISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            +++     + P     +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  G
Sbjct: 362 VLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 419

Query: 405 IVYIN 409
             Y+N
Sbjct: 420 --YLN 422

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2

 Score =  245 bits (626), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/400 (36%), Positives = 226/400 (56%), Gaps = 13/400 (3%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           +  + S R PL LPS  S  +  F+  +S +Y  K A IDA +D  +SFS     V +V+
Sbjct: 21  NSTFYSKRKPLALPSKESLDITTFI--SSQTYRGKTAFIDAATDHRISFSDLWMAVDRVA 78

Query: 69  HSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
               H +GI + DVVL+ +PN+I  PI  L V+++GA+ +TANP+ T SE+ +Q+ DSNP
Sbjct: 79  DCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNP 138

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIV-SFHDLIELSGSVTDIPD 186
           KL  T PEL  K+    +  VL    ++V  +  + R  K+V +  ++++   S   + +
Sbjct: 139 KLAFTTPELAPKIASSGISIVL----ERVEDTLRVPRGLKVVGNLTEMMKKEPSGQAVRN 194

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
             V + D A LLYSSGTTG SKGV  +H N IA      A  E   +     +C +P+FH
Sbjct: 195 -QVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIA--EPFEQPQQTFICTVPLFH 251

Query: 247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVR 304
            FGL   +   L  G  VV + +FD+   + A+EKYR T   +VPP+++ +    + +++
Sbjct: 252 TFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMK 311

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG 364
           K+D+S L+ V  G APL KE+ +   K  P   ++QGY +TE+    +    +   RR G
Sbjct: 312 KYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIESVEESRRYG 371

Query: 365 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           + G L  GVEA+IV  +T + +  NQ GE+W++GP++  G
Sbjct: 372 AVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKG 411

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  245 bits (626), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 234/414 (56%), Gaps = 34/414 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + +SS+  LI+  +D+  ++++ +    KV+
Sbjct: 14  DLIFRSKLPDIYIPK--HLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVA 71

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PNS  F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 72  VGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAK 131

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           ++IT      KVKD         S++ V    + S     + F +L +      +IP+V 
Sbjct: 132 IIITQSCFVGKVKDY-------ASENDVKVICIDSAPEGCLHFSELTQ--SDEHEIPEVK 182

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        + V++CV
Sbjct: 183 IQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSEDVLMCV 237

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ IL   L+ G  ++ M KFDI   L  I+KY+V++   VPPI+LA+AK+ 
Sbjct: 238 LPLFHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSP 297

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPISLEN 355
           +V  +D+SS++ V SGAAPLGKEL +  +   P A + QGYGMTE       C   + E 
Sbjct: 298 IVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEP 357

Query: 356 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +  G  Y+N
Sbjct: 358 FDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKG--YLN 406

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
255565415	542	AMP dependent CoA ligase, putative [Rici	0.926	0.743	0.711	1e-166
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.928	0.744	0.684	1e-159
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.928	0.744	0.679	1e-157
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.924	0.740	0.661	1e-156
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.931	0.744	0.652	1e-154
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	0.931	0.744	0.643	1e-153
312281669	543	unnamed protein product [Thellungiella h	0.928	0.744	0.638	1e-151
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.931	0.744	0.640	1e-151
147839714	663	hypothetical protein VITISV_031619 [Viti	0.977	0.641	0.619	1e-151
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.924	0.740	0.656	1e-150

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 291/409 (71%), Positives = 334/409 (81%), Gaps = 6/409 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ SMV FLFRN  SY  K ALIDAD  ++LSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPLLVLPKDPNLSMVSFLFRNCNSYPHKPALIDADLSKTLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIKVSH    LGI+K DVVLIFAPNS  FPICFL + +IGAIA+TANP+YT +E+SK
Sbjct: 61  KSIVIKVSHGLLKLGISKNDVVLIFAPNSYQFPICFLAITSIGAIATTANPLYTTTEISK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKLVITVPELW+KVKD NLPAV LG+K+ +    LI  +S+I SF  L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWNKVKDFNLPAVFLGAKESL----LIEPNSRIKSFDHLVELGGS 176

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            ++ P ++VKQTD A LLYSSGTTG+SKGVILTH NFIAAS MI+  QE+ GEL +V LC
Sbjct: 177 NSEFPTINVKQTDIATLLYSSGTTGISKGVILTHGNFIAASQMITMDQEIAGELHNVFLC 236

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKFD E+ L+A+EKYR+T  WVVPP+ILALAK 
Sbjct: 237 FLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKYRITHLWVVPPVILALAKQ 296

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
           SLV+K+D+SSL+ VGSGAAPL KELME+C K IP A I QGYGMTET   +S+ENP +GV
Sbjct: 297 SLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQGYGMTETTGIVSVENPRIGV 356

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAGTL AG+EAQI+SVDTLKPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 357 RHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMMRG--YFN 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/409 (68%), Positives = 327/409 (79%), Gaps = 5/409 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP D + S+V FLFRNS SY  K ALIDAD   +LSFS+ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPRDSNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIK +H   +LGI+K DV+LIFAPNS  FP CFL + +IGA+A+TANP+YT SELSK
Sbjct: 61  KSIVIKFAHGLLNLGISKNDVILIFAPNSYQFPTCFLAITSIGAVATTANPLYTTSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKLVITVPELWDKVK  NLPAV LG K+    S  +   S+I SFH L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWDKVKGFNLPAVFLGPKE---VSLPLESGSRIRSFHSLVELGGS 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            ++ P   VKQ+D A LLYSSGTTGVSKGVILTH NFIAASLM+S  Q + GE+ +V LC
Sbjct: 178 NSEFPVSDVKQSDIATLLYSSGTTGVSKGVILTHGNFIAASLMVSMDQVMAGEIHNVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM LR IEKYRVT  WVVPP+ILAL+K 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKYRVTHMWVVPPVILALSKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
           +LV+K+D+SSL+ +GSGAAPLGK+LM++C KN+P  TI QG+GMTETC  +SLE+P +GV
Sbjct: 298 NLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQGFGMTETCGIVSLEDPRIGV 357

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAG L AG+EAQI+SV+T KPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 358 RHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMMRG--YFN 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/409 (67%), Positives = 325/409 (79%), Gaps = 5/409 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS SY  K ALIDAD   +LSFS+ 
Sbjct: 1   MEKSGYGRDGIYRSLRPKLVLPKDPNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIKV+H   +LGI+K DVVLIFAPNS  FPICFL + + GAIA+TANP+YT SELSK
Sbjct: 61  KSIVIKVAHGLLNLGISKNDVVLIFAPNSYQFPICFLAITSTGAIATTANPLYTTSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKL+ITVPELWDKVK  NLPAV LG K +VS    +   S+I SF  L+ L GS
Sbjct: 121 QIKDSNPKLIITVPELWDKVKGFNLPAVFLGPK-RVSLP--LESGSRITSFDSLVGLGGS 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            +  P  +VKQ+D + LLYSSGTTGVSKGVILTH NFIAASLM++  Q + GE+  V LC
Sbjct: 178 NSQFPSSNVKQSDISTLLYSSGTTGVSKGVILTHGNFIAASLMVTMDQAMAGEMHDVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM L+ IEK+RVT  WVVPP++LALAK 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKHRVTDMWVVPPVVLALAKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
            +V+K+DISSL+ +GSGAAPLGK+LM++C KN+P   I QGYGMTETC  +S+E+  +GV
Sbjct: 298 DMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQGYGMTETCGIVSVEDSRLGV 357

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAG L AG+EAQIVSV+TLKPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 358 RHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMMRG--YFN 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/411 (66%), Positives = 337/411 (81%), Gaps = 9/411 (2%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRPPL LP++ + SMV FLFRNS+SY  K ALID+++++ LSFS F
Sbjct: 1   MEKSGYGRDGIYRSLRPPLHLPNNNNLSMVSFLFRNSSSYPQKPALIDSETNQILSFSHF 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS VIKVSH F +LGI K DVVLI+APNSIHFP+CFLG+IA GAIA+T+NP+YTVSELSK
Sbjct: 61  KSTVIKVSHGFLNLGIKKNDVVLIYAPNSIHFPVCFLGIIASGAIATTSNPLYTVSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSNPKL+ITVP+L +KVK  NLP +L+G   +  SS     S K+++F+DL+ L GS
Sbjct: 121 QVKDSNPKLIITVPQLLEKVKGFNLPTILIGPDSEQESS-----SDKVMTFNDLVNLGGS 175

Query: 181 V-TDIPDVS-VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
             ++ P V   KQ+D AALLYSSGTTG+SKGV+LTHKNFIA+SLM++  Q+LVGE+D+V 
Sbjct: 176 SGSEFPIVDDFKQSDTAALLYSSGTTGMSKGVVLTHKNFIASSLMVTMEQDLVGEMDNVF 235

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           LC LPMFHVFGL++I Y QLQ+GN V+SM +FD+E  L+ +EKY+VT  WVVPP+ILAL+
Sbjct: 236 LCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKYKVTHLWVVPPVILALS 295

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV 358
           KNS+V+KF++SS+K +GSGAAPLGK+LME+C K +P   + QGYGMTETC  +S+E+   
Sbjct: 296 KNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQGYGMTETCGIVSMEDIRG 355

Query: 359 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           G R SGSAG L +GVEAQIVSVDTLKPLPPNQLGEIWV+GPN+  G  Y N
Sbjct: 356 GKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNMMQG--YFN 404

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/409 (65%), Positives = 327/409 (79%), Gaps = 4/409 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+DS +SLSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDSGDSLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F+ LG+ K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFQRLGVRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  NLP VLLGSKD V        +SKI+SF+D++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFNLPVVLLGSKDSVQIPP--GSNSKILSFNDVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+D P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSDYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM KF++E+ L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKYRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAG L  GVEAQIVSV+T    PPNQ GEIWVRGPN+  G  Y+N
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNMMKG--YLN 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/409 (64%), Positives = 328/409 (80%), Gaps = 4/409 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSL PPLVLP DP+ S+V FLFR ++SY  + ALI+A S E+++F+QF
Sbjct: 1   MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFAQF 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E+ K
Sbjct: 61  KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEIQK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSN KLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 121 QVKDSNAKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+  P VS+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 179 VSHFPKVSITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 239 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
             + ++DISSLK +GSGAAPLGKELME+C K++P   + QGYGMTETC  +S E P +G+
Sbjct: 299 GKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQGYGMTETCGIVSKEIPKIGI 358

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           + +GS G LV+GVEAQI+SVDTLKPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 359 QHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKG--YFN 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/409 (63%), Positives = 327/409 (79%), Gaps = 5/409 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRN++SY SK AL+D+DS ++LSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNTSSYPSKPALVDSDSGDTLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI + DVVLIFAPNS  FP+CFL V AIG + +TANP+YT SE+SK
Sbjct: 61  KSAVSRLAHGFLRLGIRQNDVVLIFAPNSYQFPLCFLAVSAIGGVFTTANPLYTTSEISK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGS + V   G    +SKI+SF++++ELS  
Sbjct: 121 QIKDSNPKIIISVEQLFDKIKGFDLPIVLLGSGESVQVPG---SNSKILSFNNVMELSEP 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+D+P V +KQ+D AALLYSSGTTG+SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 178 VSDLPTVQIKQSDTAALLYSSGTTGISKGVELTHGNFIAASLMVTMDQDLMGEYHAVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN V+SM KF++E  L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 238 FLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKYRVTQLWVVPPVFLALSKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
           S+V+K+D+SSLK +GSGAAPLGK+LME+C +NI    + QGYGMTETC  +S+E+P +G 
Sbjct: 298 SIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQGYGMTETCGIVSVEDPRLGK 357

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAG L  GVEAQIVSV++ K  PPNQLGEIWVRGPN+  G  Y+N
Sbjct: 358 RNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNMMKG--YLN 404

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/409 (64%), Positives = 326/409 (79%), Gaps = 4/409 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+  G  Y+N
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG--YLN 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839714|emb|CAN70560.1| hypothetical protein VITISV_031619 [Vitis vinifera]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/428 (61%), Positives = 328/428 (76%), Gaps = 3/428 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSL PPLVLP DP+ S+V FLFR ++SY  + ALI+A S E+++F QF
Sbjct: 84  MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFXQF 143

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E  K
Sbjct: 144 KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEXQK 203

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSNPKLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 204 QVKDSNPKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 261

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+  P  S+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 262 VSHFPKASITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 321

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 322 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 381

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
             +  +DISSLK +GSGAAPLGKELME+C K++P   + QGYGMTETC  +S E P +G+
Sbjct: 382 GKLDXYDISSLKHIGSGAAPLGKELMEECXKSLPHVAVGQGYGMTETCGIVSKEIPKIGI 441

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV-YINFFVFTLFLWG 419
           + +G  G L +GVEAQI+SVDTLKPLPPNQLGEIWVRGPN+    V   N    TL    
Sbjct: 442 QHTGXTGPLXSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKDAVEKQNGSQLTLCRMQ 501

Query: 420 CEHTDSFI 427
           C+    FI
Sbjct: 502 CKRYKDFI 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/411 (65%), Positives = 325/411 (79%), Gaps = 9/411 (2%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGI+RSLRPPLV P DP+ SM+ FLFRN  SY ++LA++DA+S  S+S+SQ 
Sbjct: 1   MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSNSVSYSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           K++ I+VS+    LGI K DVVLIFAPNS+ F ICF+GVIAIGAI +T NPVYTVSEL+K
Sbjct: 61  KALAIRVSNGLIQLGIEKNDVVLIFAPNSVQFTICFIGVIAIGAIVTTCNPVYTVSELTK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG- 179
           QV+D+ PKLVI+V ELWDKVK+LN+P VLL   D+   S +   S KI+ F+DL+ ++G 
Sbjct: 121 QVRDAKPKLVISVAELWDKVKNLNIPTVLL---DQQIPSAI--HSPKILCFNDLVNMAGD 175

Query: 180 -SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
            S ++ P V VKQ+D AALLYSSGTTG SKGVILTH NFIA+SLMI+  Q   GE   V 
Sbjct: 176 KSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHGNFIASSLMITMDQTFNGEEHGVF 235

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           L  LPMFHVFGL+ I Y QLQKGN VVSM KF++E AL A+EKY+VT  WVVPP++LALA
Sbjct: 236 LNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALA 295

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV 358
           K SLV+K+++SS+K VGSGAAPLG+ELME+C  NIP A + QGYGMTETC  ++LENP V
Sbjct: 296 KQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGYGMTETCGVVALENPAV 355

Query: 359 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           G R SGSAGTL +GVEA+IVSVDTLKPLPPNQ GEI VRGPN+  G  Y N
Sbjct: 356 GKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMLG--YFN 404

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.931	0.744	0.628	1.4e-135
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.924	0.716	0.363	5.5e-61
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.882	0.698	0.367	5e-60
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.896	0.701	0.361	6.4e-60
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.903	0.695	0.371	2.2e-59
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.894	0.712	0.349	5.7e-59
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.871	0.675	0.371	5.7e-59
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.898	0.710	0.358	6.6e-58
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.896	0.689	0.350	1.6e-56
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.885	0.685	0.353	2e-56

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 257/409 (62%), Positives = 319/409 (77%)

Query:     1 MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
             MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct:     1 MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query:    61 KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
             KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct:    61 KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query:   121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 180
             Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD                F +++ELS  
Sbjct:   121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILS--FDNVMELSEP 178

Query:   181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
             V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct:   179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query:   241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
              LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct:   239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query:   301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
             S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + QGYGMTETC  +S+E+P +G 
Sbjct:   299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358

Query:   361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+  G  Y+N
Sbjct:   359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG--YLN 405

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 152/418 (36%), Positives = 232/418 (55%)

Query:     1 MEKSGYGR--DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
             MEK       D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct:    12 MEKQSNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYS 69

Query:    59 QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
                 I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct:    70 DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 129

Query:   119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
             +KQ K SN KL+IT     DK+K L N   V++   D                F +L + 
Sbjct:   130 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 186

Query:   178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGEL 234
             +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK  +   A  +   +  L    
Sbjct:   187 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 246

Query:   235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
             D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 306

Query:   295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 354
             LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE    +++ 
Sbjct:   307 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS 366

Query:   355 NPLVGVR---RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
                       +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  G  Y+N
Sbjct:   367 LGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG--YLN 422

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 146/397 (36%), Positives = 221/397 (55%)

Query:    12 YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSF 71
             + S R PL LPS  S  +  F+  +S +Y  K A IDA +D  +SFS     V +V+   
Sbjct:    24 FYSKRKPLALPSKESLDITTFI--SSQTYRGKTAFIDAATDHRISFSDLWMAVDRVADCL 81

Query:    72 RH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              H +GI + DVVL+ +PN+I  PI  L V+++GA+ +TANP+ T SE+ +Q+ DSNPKL 
Sbjct:    82 LHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLA 141

Query:   131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
              T PEL  K+    +  VL   +D                  ++++   S   + +  V 
Sbjct:   142 FTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLT---EMMKKEPSGQAVRN-QVH 197

Query:   191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             + D A LLYSSGTTG SKGV  +H N IA      A  E   +     +C +P+FH FGL
Sbjct:   198 KDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIA--EPFEQPQQTFICTVPLFHTFGL 255

Query:   251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDI 308
                +   L  G  VV + +FD+   + A+EKYR T   +VPP+++ +   +  +++K+D+
Sbjct:   256 LNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMKKYDV 315

Query:   309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC-APISLENPLVGVRRSGSAG 367
             S L+ V  G APL KE+ +   K  P   ++QGY +TE+  A  S+E+ +   RR G+ G
Sbjct:   316 SFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIES-VEESRRYGAVG 374

Query:   368 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
              L  GVEA+IV  +T + +  NQ GE+W++GP++  G
Sbjct:   375 LLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKG 411

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 147/407 (36%), Positives = 226/407 (55%)

Query:     9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
             D I+RS  P + +P+     +  ++F N + +++K  LI+  + E  +++       K++
Sbjct:    20 DVIFRSRLPDIYIPNH--LPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLA 77

Query:    69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                 +LG+ + DVV+I  PNS    + FL    IGAI ++ANP +T +E+SKQ K S  K
Sbjct:    78 AGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAK 137

Query:   129 LVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTD-IPDV 187
             L++T     DK+K+L    VL+ + D                F +L +      D IP+ 
Sbjct:   138 LIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLR------FSELTQSEEPRVDSIPE- 190

Query:   188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMF 245
              +   D  AL +SSGTTG+ KGV+LTHK  +   A  +   +  L    D V+LCVLPMF
Sbjct:   191 KISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMF 250

Query:   246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
             H++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  VVPPI+LA+AK+    K
Sbjct:   251 HIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEK 310

Query:   306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR---R 362
             +D+SS+++V SGAAPLGKEL +      P A + QGYGMTE    +++           +
Sbjct:   311 YDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVK 370

Query:   363 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             SG+ GT+V   E +I+  DT   LP N+ GEI +RG  +  G  Y+N
Sbjct:   371 SGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKG--YLN 415

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 152/409 (37%), Positives = 221/409 (54%)

Query:     3 KSGYGRD-GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             KSG+     I+ S R P+ LP +    +  F+   S  +  K   +DA +   LSF +  
Sbjct:    24 KSGFCESTSIFYSKREPMALPPNQFLDVTSFIA--SQPHRGKTVFVDAVTGRRLSFPELW 81

Query:    62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
               V +V+     LG+ K +VV+I +PNSI FPI  L V+++GAI +TANP+ T  E+SKQ
Sbjct:    82 LGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQ 141

Query:   122 VKDSNPKLVITVPELWDKV---KDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELS 178
             + DS P L  T  +L  K+    + NLP VL+                       +IE  
Sbjct:   142 IGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGR-LETMIETE 200

Query:   179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
              S + +    V Q D AALLYSSGTTG SKGV+L+H+N IA   ++ A++   G L+   
Sbjct:   201 PSESRVKQ-RVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA---LVQAYRARFG-LEQRT 255

Query:   239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
             +C +PM H+FG        +  G  +V + KFD+   L A+E +R +   +VPPI++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:   299 K--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA-PISLEN 355
                N +  K+D+SSL  V +G APL +E+ E   +N P   I QGYG+TE+ A   S+ N
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASMFN 375

Query:   356 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
                  +R G++G L   VE +IV  DT + L  NQ GE+W+R P V  G
Sbjct:   376 K-EETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKG 423

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 143/409 (34%), Positives = 228/409 (55%)

Query:     3 KSGY-GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             +SG+   +  + S R P+ LP +PS  +  F+  +S ++  ++A IDA + ++L+F++  
Sbjct:     7 RSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFI--SSQAHRGRIAFIDASTGQNLTFTELW 64

Query:    62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
               V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T +E++KQ
Sbjct:    65 RAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQ 124

Query:   122 VKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSG 179
             +KDSNP L  T  +L  K+      LP VL+  +                   ++++   
Sbjct:   125 IKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLV-------EMMKKEP 177

Query:   180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD--HV 237
             S   + +  V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G  D    
Sbjct:   178 SGNRVKE-RVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGSDDGEQR 233

Query:   238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 297
              +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VPPI++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:   298 AKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 355
                +  +  K+D+SS+  V  G APL KE+ E   +  P   I QGYG+TE+    +  +
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query:   356 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
              +   RR G+AG L A +E +IV   T + L P Q GE+W++GP++  G
Sbjct:   354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKG 402

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 148/398 (37%), Positives = 225/398 (56%)

Query:    11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
             I+RS  P + +P+     +  + F   +S S K  LI   + +S ++ +   I  +V+  
Sbjct:    34 IFRSKLPDIDIPNH--LPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASG 91

Query:    71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
                LGI K DV++I   NS  F   F+G   IGA+++TANP YT  EL KQ+K S  KL+
Sbjct:    92 LYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLI 151

Query:   131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
             IT  +  DK+K+L     L+ + +                F  LI    +      V + 
Sbjct:   152 ITHSQYVDKLKNLGENLTLITTDEPTPENCLP--------FSTLITDDETNPFQETVDIG 203

Query:   191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
               DAAAL +SSGTTG+ KGV+LTHK+ I   A  +   +  L  + + V+LCVLP+FH++
Sbjct:   204 GDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIY 263

Query:   249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
              L+ +L + L+ G  V+ M KF+I   L  I+++RVT+  +VPP+++ALAKN  V  +D+
Sbjct:   264 SLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDL 323

Query:   309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL-----ENPLVGVRRS 363
             SS++ V SGAAPLGKEL +  ++ +P A + QGYGMTE    +S+     + P+    +S
Sbjct:   324 SSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIP--TKS 381

Query:   364 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 401
             GS GT+V   E ++V ++T   L  NQ GEI +RG  +
Sbjct:   382 GSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQI 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 146/407 (35%), Positives = 228/407 (56%)

Query:     3 KSGYGR-DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             +SG+ + +  + S R PL LP + S  +  F+  +S  +  K A IDA + + L+FS   
Sbjct:    13 RSGFCKSNSTFYSKRQPLSLPPNLSRDVTTFI--SSQPHRGKTAFIDAATGQCLTFSDLW 70

Query:    62 SIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
               V +V+    H +GI + DVVLI +PNSI  P+  L V+++GA+ +TAN + T  E+SK
Sbjct:    71 RAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEISK 130

Query:   121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 180
             Q+ DSNP LV T  +L  K+  + +  VL    D                  ++++   S
Sbjct:   131 QIADSNPTLVFTTRQLAPKLP-VAISVVLT---DDEVYQELTSAIRVVGILSEMVKKEPS 186

Query:   181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVL 239
                + D  V Q D A +LYSSGTTG SKGVI +H+N  A  +  IS + +     D + +
Sbjct:   187 GQRVRD-RVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR----DDIFI 241

Query:   240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
             C +PMFH +GL       +  G+ VV + +F +   + A+EK+R T   + PP+++A+  
Sbjct:   242 CTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMIN 301

Query:   300 NS-LVR-KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL 357
             ++ L++ K+D+SSLK V  G APL KE+ E   +  P   I QGY +TE+    +  N  
Sbjct:   302 DADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFTNSA 361

Query:   358 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
                RR G+AGTL + VEA+IV  +T + +  NQ GE+W++GP+++ G
Sbjct:   362 EESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKG 408

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 143/408 (35%), Positives = 226/408 (55%)

Query:     8 RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKV 67
             + GIY S  P L LP DP+   V  LF  S  +    ALID+ +  S+S ++ + +V  +
Sbjct:    28 KTGIYTSKFPSLHLPVDPNLDAVSALF--SHKHHGDTALIDSLTGFSISHTELQIMVQSM 85

Query:    68 SHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126
             +    H LG+ + DVV +  PNS++FP+ FL +I++GAI +T NP  ++ E+ KQV + +
Sbjct:    86 AAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECS 145

Query:   127 PKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD 186
               L  T  E  +K+  L +  + +                    F+ +++ S     +P 
Sbjct:   146 VGLAFTSTENVEKLSSLGVSVISVSES-----YDFDSIRIENPKFYSIMKESFGF--VPK 198

Query:   187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMI--SAHQ-ELVGELDHVVLCVL 242
               +KQ D AA++YSSGTTG SKGV+LTH+N IA+  L +   A Q E  G   +V L  L
Sbjct:   199 PLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGS-SNVYLAAL 257

Query:   243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
             P+ H++GLS+ +   L  G+ +V M +FD    +  IE++++T + VVPP+++AL K + 
Sbjct:   258 PLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAK 317

Query:   303 VRKFDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR 361
                 ++  SLK V SGAAPL ++ +ED  + +P   + QGYGMTE+ A  +       + 
Sbjct:   318 GVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNSEKLS 377

Query:   362 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             R  S G L   ++A++V   +   LPP   GE+W++GP V  G  Y+N
Sbjct:   378 RYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKG--YLN 423

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 149/422 (35%), Positives = 235/422 (55%)

Query:     4 SGYG-RDGIYRSLRPPLVLPS-DPSFSMVHF----LFRNS--ASYSSKLA----LIDADS 51
             SG+  R GIY SLRP L LP  D   S   F    L ++S  A+    +     L+++ S
Sbjct:    15 SGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSS 74

Query:    52 DESLSFSQFKSIVIKVSHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109
              ++L++ +    V  ++ S R     +  ++V  I +P+S+  P+ +L +++IG + S A
Sbjct:    75 GDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPA 134

Query:   110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 169
             NP+ + SE+S QV+ S P +     +   K++  +LP   LG+                 
Sbjct:   135 NPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLP---LGT-----------VLMDST 180

Query:   170 XFHDLIELSGSVTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
              F   +  S S +  P  V V Q+D AA+L+SSGTTG  KGV+LTH+N IA++ +  +HQ
Sbjct:   181 EFLSWLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAV--SHQ 238

Query:   229 ELVGE---LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
               + +    D V L  LP+FHVFG  +++   +  G  +V +G+F++E   +A+EKY+VT
Sbjct:   239 RTLQDPVNYDRVGLFSLPLFHVFGFMMMIR-AISLGETLVLLGRFELEAMFKAVEKYKVT 297

Query:   286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 345
                V PP+I+AL K+ L +K+D+ SL+ +G G APLGK++ E  ++  P   I QGYG+T
Sbjct:   298 GMPVSPPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLT 357

Query:   346 ETCAPI-SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
             E+  P  S   P   V+  GS G +   +EA+IV   T + LPP + GE+W+RGP +  G
Sbjct:   358 ESSGPAASTFGPEEMVKY-GSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKG 416

Query:   405 IV 406
              V
Sbjct:   417 YV 418

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.6405	0.9310	0.7444	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	435
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-155
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-109
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-100
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	6e-90
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	6e-87
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	7e-87
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-80
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-70
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-63
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-62
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-61
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-57
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-57
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-56
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	4e-56
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-55
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-53
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-53
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-49
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-46
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-45
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-44
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-44
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	4e-44
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-41
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-41
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	5e-41
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-40
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-39
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-38
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	8e-37
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-36
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-36
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-36
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-35
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-35
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-35
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-34
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-33
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-32
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-32
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-32
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-31
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-31
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-31
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-31
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-31
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	8e-31
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	9e-31
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-30
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-30
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-30
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	8e-30
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-29
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-29
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	4e-29
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-29
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-28
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-27
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-27
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-26
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	5e-26
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	9e-26
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-25
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	9e-25
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-24
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-24
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-24
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-24
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-23
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-22
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-22
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-21
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-21
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-21
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-21
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-21
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	5e-21
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	7e-21
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-20
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-19
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-19
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-19
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	5e-19
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-19
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	9e-19
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-18
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-18
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	2e-17
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-17
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-17
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-17
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	7e-17
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-16
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-16
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-16
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-16
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-16
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-16
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	6e-16
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	8e-16
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	9e-16
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-15
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-15
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	7e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-14
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-14
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	4e-14
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	5e-14
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-13
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-13
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-13
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	3e-13
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-13
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	5e-13
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-12
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-12
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-12
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	6e-12
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	6e-12
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	6e-12
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-11
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-11
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	3e-11
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-11
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	9e-11
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-10
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	8e-10
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-09
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-09
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-09
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-09
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	6e-09
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	6e-09
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	7e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	8e-09
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	8e-09
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	8e-09
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	9e-09
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	1e-08
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-08
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	7e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-08
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	8e-08
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-07
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	4e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	5e-07
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-07
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	7e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	9e-06
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-05
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-05
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	1e-05
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	4e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	4e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-05
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	7e-05
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-04
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	0.003

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  448 bits (1155), Expect = e-155
 Identities = 178/390 (45%), Positives = 241/390 (61%), Gaps = 18/390 (4%)

Query: 21  LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD 80
           +P D S      LF  ++ +  + ALIDA +  +L++++ + +V +++      G  K D
Sbjct: 1   IPKDLSLDSASLLF--ASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGD 58

Query: 81  VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV 140
           VVL+ +PNS+ FP+ FL V++ GA+ +TANP+YT +E++KQVKDS  KL IT  EL +K+
Sbjct: 59  VVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKL 118

Query: 141 KDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY 199
             L L P VLL S D  S+                  L     + P V +KQ D AAL Y
Sbjct: 119 ASLALEPVVLLDSADDGSA-------------AIDDLLFADEPEPPVVVIKQDDVAALPY 165

Query: 200 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259
           SSGTTG SKGV+LTH+N IA    + A +    + + V LCVLPMFH++GL+VIL   L+
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225

Query: 260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA 319
            G  VV M +FD+E  L AIEKY+VT   VVPPI+LAL K+ +V K+D+SSLK +GSGAA
Sbjct: 226 LGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAA 285

Query: 320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS 379
           PLGKEL E  +   PG  + QGYGMTE+    ++        + GS G LV  VEA+IV 
Sbjct: 286 PLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVD 345

Query: 380 VDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +T + LPPNQ GE+WVRGP V  G  Y+N
Sbjct: 346 PETGESLPPNQPGELWVRGPQVMKG--YLN 373

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  330 bits (848), Expect = e-109
 Identities = 162/370 (43%), Positives = 218/370 (58%), Gaps = 16/370 (4%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           ALIDAD+   L+F+      ++++   R LG+ + DVV + +PNSI FP  FLG +A G 
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGG 60

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV----SSSG 160
           I S ANP YT  EL+ Q+K S PKL+   P+  DKVK+    A  LG   ++    S+  
Sbjct: 61  IVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEA---AKELGPVVRIIVLDSAPD 117

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            + R   ++      E     T + D    + D AALLYSSGTTG+ KGV+L+HKN IA 
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLID---GKDDTAALLYSSGTTGLPKGVMLSHKNIIAN 174

Query: 221 -SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 279
            S +    +      + VVL  LP +H +GL+  L   L  G  V+ M KFD E  L+ I
Sbjct: 175 LSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLA-SLLCGATVIIMPKFDSETFLKLI 233

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           EKY+VT  ++VPPI +ALAK+ LV K+D+SSL+++ SGAAPL KEL E+ +K  P  TI 
Sbjct: 234 EKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIK 293

Query: 340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
           QGYGMTET    +L  P  G  + GS G LV  VEA+IV  D  K L PN+ GE+ V+GP
Sbjct: 294 QGYGMTETGPATTLTPP--GDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGP 351

Query: 400 NVTPGIVYIN 409
            +  G  Y+N
Sbjct: 352 QIMKG--YLN 359

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  309 bits (794), Expect = e-100
 Identities = 151/412 (36%), Positives = 232/412 (56%), Gaps = 34/412 (8%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P+     +  + F   + +S +  LID  +    +++  + +  +V+  
Sbjct: 9   IFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAG 66

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              LGI + DVV++  PN   F + FLG    GA+ +TANP YT +E++KQ K S  KL+
Sbjct: 67  LHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLI 126

Query: 131 ITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 189
           IT     DK+K L     V + + D              + F +L +   +  ++P+V +
Sbjct: 127 ITQSCYVDKLKGLAEDDGVTVVTID--------DPPEGCLHFSELTQADEN--ELPEVEI 176

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCVL 242
              D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+LCVL
Sbjct: 177 SPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPNLYFHSDDVILCVL 231

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           PMFH++ L+ +L   L+ G  ++ M KF+I   L  I++++VT+   VPPI+LA+AK+ +
Sbjct: 232 PMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV 291

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL-----ENPL 357
           V K+D+SS+++V SGAAPLGKEL +  +  +P A + QGYGMTE    +++     + P 
Sbjct: 292 VEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPF 351

Query: 358 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
               +SGS GT+V   E +IV  +T   LP NQ GEI +RGP +  G  Y+N
Sbjct: 352 --PVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKG--YLN 399

Length = 537

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  283 bits (725), Expect = 6e-90
 Identities = 151/414 (36%), Positives = 234/414 (56%), Gaps = 33/414 (7%)

Query: 10  GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSH 69
           GIY S  PP+ LPSDP+   V F+F +  +++   ALID+ +  S+S+S+ + +V  ++ 
Sbjct: 23  GIYSSKHPPVPLPSDPNLDAVSFIF-SHHNHNGDTALIDSSTGFSISYSELQPLVKSMAA 81

Query: 70  SFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
              H +G+ + DVVL+  PNS++FP+ FL V+++G I +T NP  ++ E+ K+V D +  
Sbjct: 82  GLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVG 141

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELSGSVTDIPDV 187
           L  T PE  +K+  L +P +       V  +    S+  +   F++LI+       +P  
Sbjct: 142 LAFTSPENVEKLSPLGVPVIG------VPENYDFDSKRIEFPKFYELIKEDFDF--VPKP 193

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS---LMISAHQELVGELDHVVLCVLPM 244
            +KQ D AA++YSSGTTG SKGV+LTH+N IA     +   A Q      D+V L  LPM
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253

Query: 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-V 303
           FH++GLS+ +   L  G+ +V M +FD    ++ I++++VT + VVPPI++AL K +  V
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV 313

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR-- 361
               + SLK V  GAAPL  + ++D  + +P     QGYGMTE+ A        VG R  
Sbjct: 314 CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA--------VGTRGF 365

Query: 362 ------RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
                 +  S G L   ++A++V   T   LPP   GE+W++GP V  G  Y+N
Sbjct: 366 NTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKG--YLN 417

Length = 560

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  272 bits (698), Expect = 6e-87
 Identities = 119/375 (31%), Positives = 184/375 (49%), Gaps = 42/375 (11%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
              L R +  +  + AL        L++++   +  + +   + LG+ K D V +  PN 
Sbjct: 2   ADLLERAARRFPDRPALTF--FGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL 149
             FPI + G++  GA+    NP+YT  EL  Q+ DS  K++I                  
Sbjct: 60  PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA---------------- 103

Query: 150 LGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
                              +SF D +     +    ++S    D A L Y+ GTTGV KG
Sbjct: 104 -------------------ISFEDALASGAPLPLPVELS--PDDLAVLQYTGGTTGVPKG 142

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269
            +LTH+N +A    I+A  + + E +   L  LP+FH+FGL+V +   L+ G   V +  
Sbjct: 143 AMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPN 202

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
           F     L+ I++YR T++  VP +  AL  +   +K+D SSL+L  SG APL  E+ E  
Sbjct: 203 FRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERF 262

Query: 330 QKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN 389
            +   GA + +GYG+TET +P++  NPL G R+ GS G  + G E +IV  +    LPP 
Sbjct: 263 -EEKTGAPLVEGYGLTET-SPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEG-NELPPG 319

Query: 390 QLGEIWVRGPNVTPG 404
           ++GE+ VRGP V  G
Sbjct: 320 EVGELVVRGPQVMKG 334

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  274 bits (702), Expect = 7e-87
 Identities = 134/389 (34%), Positives = 189/389 (48%), Gaps = 11/389 (2%)

Query: 24  DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
               ++   L R +     + ALI       L++ +      +++ + + LG+   D V 
Sbjct: 8   TAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVA 67

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           I  PNS  F I FL  +  GA+A   NP  T  EL+  + D+  K++IT  E    ++ +
Sbjct: 68  ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAV 127

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
                       V      +     ++   L    G   D     V   D A LLY+SGT
Sbjct: 128 ----AEALPVVLVVLLVGDADDRLPITLEALAA-EGPGPDADARPVDPDDLAFLLYTSGT 182

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG+ KGV+LTH+N +A +  I+A        D VVL  LP+FH+FGL V L   L  G  
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242

Query: 264 VV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAP 320
           +V  S   FD E  L  IEKY+VTV   VP  +  L  N      D+SS L+LV SG AP
Sbjct: 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP 302

Query: 321 LGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV 380
           L  EL+E  ++      I +GYG+TET   +++  P   + + GS G  + GVE +IV  
Sbjct: 303 LPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDP 362

Query: 381 DTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           D  + L P ++GEIWVRGPNV  G  Y N
Sbjct: 363 DGGEVL-PGEVGEIWVRGPNVMKG--YWN 388

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  254 bits (651), Expect = 1e-80
 Identities = 109/351 (31%), Positives = 175/351 (49%), Gaps = 12/351 (3%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++ +      +++ + R LG+   D V I  PNS  + +  L V+  GA     +P    
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
             L+  ++DS  K++IT  EL  K+ ++ L  ++L +   V   G        +   D  
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEG------LDLLDDE 114

Query: 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235
            L+G+  + P   V   D A ++Y+SGTTG  KGV+LTH+N +A +  ++    L     
Sbjct: 115 LLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP--G 172

Query: 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWVVPPI 293
             VL +LP+     +  I    L  G  +V + KF  D    L  IEKY+VTV + VP +
Sbjct: 173 DRVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 353
           +  L K    +K+D+SSL+LV SG  PL  EL+   ++   G  +  GYG TET    + 
Sbjct: 232 LRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATA 291

Query: 354 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
             P     + GS G  + GVE +++  +  +P+PP ++GE+ +RGP V  G
Sbjct: 292 NLPGDPEVKPGSIGRPLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARG 341

Length = 412

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  230 bits (588), Expect = 6e-70
 Identities = 131/402 (32%), Positives = 222/402 (55%), Gaps = 22/402 (5%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P     ++  F+ +++  Y+ K+A ++A + +++++ +      + + +
Sbjct: 14  IFRSRYPSVPVPDK--LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKA 71

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
            R LG+ K  VV++  PN   + I  LG++A G + S ANP    SE+ KQ + +  KL+
Sbjct: 72  LRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLI 131

Query: 131 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS-V 189
           +T    + KVK L LP ++LG            +    V++ +L+E +    D  D   +
Sbjct: 132 VTNDTNYGKVKGLGLPVIVLGE----------EKIEGAVNWKELLEAADRAGDTSDNEEI 181

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHV 247
            QTD  AL +SSGTTG+SKGV+LTH+N +A   S + S   E++G++  V L ++P FH+
Sbjct: 182 LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQV--VTLGLIPFFHI 239

Query: 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD 307
           +G++ I    L+    VV M +F++   L A+    V+   +VPPIIL L KN +V +FD
Sbjct: 240 YGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFD 299

Query: 308 ISSLKL--VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-TCAPISLENPLV--GVRR 362
           +S LKL  + + AAPL  EL+   +   PG  + + YG+TE +C  ++  +P    G+ +
Sbjct: 300 LSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAK 359

Query: 363 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
             S G ++  +E + +  DT + LP N  GE+ VR   V  G
Sbjct: 360 KNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQG 401

Length = 546

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  213 bits (544), Expect = 1e-63
 Identities = 115/366 (31%), Positives = 175/366 (47%), Gaps = 27/366 (7%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++++    V +++++ R LG+ K D V +F  NS  +   +  V  IGA+    N     
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSGLISRSSKIV 169
            E++  + D+  ++V+   E    +  +   LP V    + G       +  +       
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGE----- 147

Query: 170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 229
            + +L  L+ +        + + DAAA+LY+SGTTG  KGV+L+H+N    SL + A   
Sbjct: 148 -YEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL- 203

Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
            +   D V L ++PMFHV    +  Y  L  G   V   +FD E  L  IE  RVT ++ 
Sbjct: 204 KLSRDD-VYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFA 261

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
           VP I   L K       D SSL+LV  G A L   L+ + ++   G  + QGYGMTET  
Sbjct: 262 VPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQGYGMTETSP 320

Query: 350 PISLENP----LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTP 403
            +S+  P         +  SAG  + GVEA+IV  D    LPP+  ++GEI VRGP +  
Sbjct: 321 VVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQ 379

Query: 404 GIVYIN 409
           G  Y N
Sbjct: 380 G--YWN 383

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  208 bits (532), Expect = 5e-62
 Identities = 109/385 (28%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           ++   L R +  +  K A +  D  + L++++  + V + + +   LGI K D V I+AP
Sbjct: 6   TLPELLARAARRFGDKEAYVFGD--QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAP 63

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDLNL 145
           NS H+ I  LG +  GA+    N  YT  E +  +   + K +  +      D      L
Sbjct: 64  NSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRL 123

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
           PA  L       +      + K+ +F D +  +G   +     V   D A +L++SGTTG
Sbjct: 124 PA--LEHVVICETEEDDPHTEKMKTFTDFLA-AGDPAERA-PEVDPDDVADILFTSGTTG 179

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHV----VLCVLPMFHVFGLSVILYDQLQKG 261
             KG +LTH+       ++S   +    L        L   P FHVFG    +   L +G
Sbjct: 180 RPKGAMLTHRQ------LLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233

Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++ +  FD +   R IE  R+TV    P +  +L ++      D+SSL+L  +GAA +
Sbjct: 234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASM 293

Query: 322 GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR--SGSAGTLVAGVEAQIVS 379
              L+E  +  +    +  GYG++E  + ++  N L   R+  +G+ GT +AGVE +IV+
Sbjct: 294 PVALLERFESELGVDIVLTGYGLSE-ASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN 352

Query: 380 VDTLKPLPPNQLGEIWVRGPNVTPG 404
               + +P  ++GE+ VRGPNV  G
Sbjct: 353 ELG-EEVPVGEVGELLVRGPNVMKG 376

Length = 513

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  208 bits (531), Expect = 1e-61
 Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 20/364 (5%)

Query: 43  KLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
             A+I   +      L++   +  V +++++ + LG  K D V I+ PNS    I  L  
Sbjct: 26  DTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLAT 85

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSS 159
             IGAI +  +P  +   ++ ++ D  PK++I     +   K++ L        D V SS
Sbjct: 86  ARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDA----DAVLSS 141

Query: 160 GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA 219
            ++      + + + +E +          +   D   LLY+SGTTG  KG++ +H  ++ 
Sbjct: 142 VVVVP-RLGLWYDEAVEKAS--EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 220 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---KFDIEMAL 276
              + +     +   D           ++GL   ++  L  G   V       +  E   
Sbjct: 199 EHRLTAKFHGDLLPGD-RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLW 257

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
            A+EKY+VT++   P  +  L K  L   +D+SSL+++GS   PL  E  E     + G 
Sbjct: 258 EALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GV 316

Query: 337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 396
            I   YG TET        P V   ++GS+G  + G   + V  D   P+PP   GE+ V
Sbjct: 317 WILDIYGQTETGMGFIAGRPPV---KNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVV 371

Query: 397 RGPN 400
           R P 
Sbjct: 372 RLPW 375

Length = 528

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  192 bits (490), Expect = 1e-57
 Identities = 93/213 (43%), Positives = 129/213 (60%), Gaps = 6/213 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +LY+SGTTG  KGV+L+H+N +A +  ++    L  E D V+L VLP+FHV G   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGD-VLLSVLPLFHVVGGGS 58

Query: 253 ILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
            L   L  G  VV    F      L  IE+YRVTV + VP +  ALAK +  R +D+SSL
Sbjct: 59  GLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSL 118

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 371
           +L+ SG  PL  EL+E  ++  PGA I +GYG+TET   ++  NP   +++ G+ G  V 
Sbjct: 119 RLLISGGEPLSPELLERFEE-RPGAPILEGYGLTETS-VVTSTNPDSELKKPGTVGRPVP 176

Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           GVE ++V  +  KPLPP ++GE+ VRGP V  G
Sbjct: 177 GVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKG 208

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  192 bits (490), Expect = 1e-57
 Identities = 85/218 (38%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A + Y+SGTTG  KG +LTH+N +     I+    L        L  +P+FHVFGL +
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL--TEGDRTLVPVPLFHVFGLVL 60

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 312
            +   L  G  +V M KFD   ALR IE+ R+T    VP + +AL ++    KFD+SSL+
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLR 120

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV-RRSGSAGTLVA 371
              SG AP+  EL+   ++  P A I  GYGMTET    +  +       R G+ G  + 
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLP 180

Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           GVE +IV  D    +PP ++GEI VRG +V  G  Y N
Sbjct: 181 GVEVKIVDPDG-GEVPPGEVGEICVRGYSVMKG--YYN 215

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  194 bits (496), Expect = 2e-56
 Identities = 118/405 (29%), Positives = 191/405 (47%), Gaps = 40/405 (9%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS-HSFRHLGITKKDVVL 83
           P  S+ H L  ++  Y  K A++      ++S+ +      +++ +  +  G+ K D VL
Sbjct: 8   PETSLFHNLEVSARRYPDKTAIVFYGR--AISYRELLEEAERLAGYLQQECGVRKGDRVL 65

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           ++  NS  F I +  ++   A+    NP+    EL+  V DS  ++ I   EL  KV   
Sbjct: 66  LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPA 125

Query: 144 N----LPAVLLGS-KDKVSSSGLISRSSKIVSFHDLIELS-GSVTDI----------PDV 187
                L  V++    D + +   I+  + + +   L  L+ G V             P  
Sbjct: 126 VGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPH 185

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHK----NFIAASLMISAHQELVGELDHVVLCVLP 243
           +    D A L Y+SGTTGV KG + TH+    N + + L  ++  E       VVL VLP
Sbjct: 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPE------SVVLAVLP 239

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           +FHV G+   +   +  G  VV M ++D E A R IE+YRVT W  +P +++    +  +
Sbjct: 240 LFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGL 299

Query: 304 RKFDISSLKLVGSGAAPL----GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG 359
            + D+SSL+ +G G A +     + L E       G    +GYG+TET A  +  NP   
Sbjct: 300 AERDLSSLRYIGGGGAAMPEAVAERLKELT-----GLDYVEGYGLTETMAQ-THSNPP-D 352

Query: 360 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
             +    G    GV+A+++  +TL+ LPP ++GEI V GP V  G
Sbjct: 353 RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKG 397

Length = 546

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  188 bits (480), Expect = 4e-56
 Identities = 87/212 (41%), Positives = 118/212 (55%), Gaps = 5/212 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +LY+SGTTG  KGV+LTH+N +A    ++A   +      V L   P++H  G   
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLAN--AVNALAGVDLSPGDVYLLAAPLYHAAGGLF 59

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 312
           +L   L  G  VV M KFD E  L  IE++RVT  ++VP +   L +     ++D+SSL+
Sbjct: 60  LLP-ALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLR 118

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG 372
           L+  GAAP+  EL         G    QGYGMTET    +L +P   +R+ GS G  V G
Sbjct: 119 LIIYGAAPMPAELKR-AMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPG 177

Query: 373 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           VE +IV  D  + LPP ++GEI VRGP V  G
Sbjct: 178 VEVRIVDEDG-RELPPGEVGEIVVRGPAVMAG 208

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  192 bits (489), Expect = 2e-55
 Identities = 134/413 (32%), Positives = 218/413 (52%), Gaps = 34/413 (8%)

Query: 18  PLVLPSDPSFSM--VH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL 74
           P  +PS  S+ +  +H ++ + ++ Y  K AL     D  ++FS F   V + ++  + L
Sbjct: 12  PEEIPSTISYDIQPLHKYVEQMASRYPEKKALHFLGKD--ITFSVFHDKVKRFANYLQKL 69

Query: 75  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
           G+ K D V I  PN     I + G +  G I    NP+YT  EL  Q+ DS  K+++ + 
Sbjct: 70  GVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLD 129

Query: 135 ELWDKVKD------------------LNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176
            ++ +V +                  L  P  LL    +   S L+ +    VS  + I 
Sbjct: 130 LVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVK----VSESETIH 185

Query: 177 LSGSVTDIPDVSVK-----QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           L  SV    +  V+     + D A L Y+ GTTG  KGV+LTHKN ++ +LM        
Sbjct: 186 LWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNC 245

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            E + VVL VLP FHV+G++ ++   + +G  +V + KFD++M   AI+K++VT++   P
Sbjct: 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAP 305

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 351
            I +AL  + L++++DISS++   SG+APL  E+ E  +  + G  + +GYG+TE+ +P+
Sbjct: 306 TIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFET-VTGGKLVEGYGLTES-SPV 363

Query: 352 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           +  N L   R  GS G      EA I+S++T + LPP ++GEI V+GP +  G
Sbjct: 364 THSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKG 416

Length = 563

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  184 bits (469), Expect = 1e-53
 Identities = 97/353 (27%), Positives = 157/353 (44%), Gaps = 64/353 (18%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            +++++   +V +++   +  G+ K D V ++  NS  F I +  ++  GA+    NP+ 
Sbjct: 1   VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
             +EL   + DS  +++I   EL D        AV                         
Sbjct: 61  REAELEHILNDSGARVLIVGSELDD-------VAV------------------------- 88

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     IP             Y+SGTTG+ KG + TH+  +A     +A       
Sbjct: 89  ----------IP-------------YTSGTTGLPKGCMHTHRTVLAT----AAASAAWSG 121

Query: 234 LDH--VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
           L    V+L  LP+FHV G+   +   +  G  +V + ++D E A RAIE+YRVT W  + 
Sbjct: 122 LTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV 181

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 351
            +++ L  +     +D+SSLK+VG G A L   + E  +  + G    +GYG+TET    
Sbjct: 182 TMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKA-LTGLLYEEGYGLTETHTCT 240

Query: 352 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
               P     +    G  V G +A+++  +T + LPP + GEI VRGP V  G
Sbjct: 241 HFNPPDRP--KPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKG 291

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  186 bits (474), Expect = 2e-53
 Identities = 125/402 (31%), Positives = 203/402 (50%), Gaps = 50/402 (12%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L + +A Y  + AL     D  +++++ +++    + +    G  K   V ++  N+  
Sbjct: 26  LLSKAAADYGPRPAL--EFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPD 83

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
            PI F G +  GA     +P+     LS ++ DS  +L+IT         DL   A LL 
Sbjct: 84  HPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLIT--------SDL---AALLP 132

Query: 152 SKDKVSSSGLISR---------------------SSKIVSFHDLIELSGSVTDIPDVSVK 190
              K    GL+ R                       +IV++ D ++ + +  + P  +V 
Sbjct: 133 MALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWP--AVT 190

Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-------HVVLCVLP 243
             D A L Y+ GTTG+ KG +LTH N  +A   +S + ++ G+           V+CVLP
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSA---VSIY-DVWGKPSRATRGDVERVICVLP 246

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           +FH++ L+VIL   L++G+ +    +FD+    R IE+ R TV+  VP + +ALA +  +
Sbjct: 247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL 306

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 363
            K D+SSL  +GSG APL  E+    ++   G  +  G+GMTETC+P    +P  G  + 
Sbjct: 307 EKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSP-GTGHPPEGPDKP 364

Query: 364 GSAGTLVAGVEAQIVSV-DTLKPLPPNQLGEIWVRGPNVTPG 404
           GS G ++ G+E  +VS+ D  K LPP ++GE+ +RGPNVT G
Sbjct: 365 GSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG 406

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  176 bits (449), Expect = 1e-49
 Identities = 116/416 (27%), Positives = 186/416 (44%), Gaps = 49/416 (11%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           ++V       A +  + AL     D    + ++++    V + +   R LG+   D V I
Sbjct: 33  TLVDLYDNAVARFGDRPAL-----DFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAI 87

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
             PN     + F  V+ +GA+    NP+YT  EL    +D   ++ I    +WDKV    
Sbjct: 88  VLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAI----VWDKVAPTV 143

Query: 145 LPAVLLGSKDKVSSSGLIS-----------------RSSK---------IVSFHDLIE-- 176
                    + + S  +I+                 R ++          V +  L++  
Sbjct: 144 ERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAA 203

Query: 177 --LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
               GS    P  +    D A +LY+SGTTG  KG  LTH+N  A +    A    +G+ 
Sbjct: 204 IGGDGSDVSHPRPT--PDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG 261

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
              VL  LPMFH +GL++ L   +  G  +V +   DI++ L A++K+  T    VPP+ 
Sbjct: 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLY 321

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 354
             +A+ +  R  D+S ++   SGA  L    +E  +K + G  + +GYG+TET +PI + 
Sbjct: 322 EKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEK-LTGGLLVEGYGLTET-SPIIVG 379

Query: 355 NPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPGIVYIN 409
           NP+   RR G  G      E +IV  +   + +P  + GE+ VRGP V  G  Y N
Sbjct: 380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKG--YWN 433

Length = 573

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  165 bits (420), Expect = 4e-46
 Identities = 97/379 (25%), Positives = 155/379 (40%), Gaps = 58/379 (15%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L  N+A +  + A++D      L++ +  + V +++     LGI   D VL+  PN   F
Sbjct: 21  LAANAARHPDRTAVVDGP--RRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEF 78

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGS 152
            I +  +  +GAI   A P +   E+    + S  K  I                     
Sbjct: 79  VILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRF---------------- 122

Query: 153 KDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
                            S  D   L+  +  ++PDV       A    S GTTG+ K + 
Sbjct: 123 -----------------SGFDYAALARELLEELPDV-------ALFQLSGGTTGLPKLIP 158

Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMG 268
            TH +++ ++   SA       LD   V L VLP  H F L S  L   L  G  VV   
Sbjct: 159 RTHNDYLYSAR-ASAE---ACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHH 214

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
               ++A   IE+ +VT   +VP ++    + +   + D+SSL+++  G APL  EL   
Sbjct: 215 PPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGGAPLSPELARR 274

Query: 329 CQKNIPGATIFQGYGMTE---TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 385
            ++   G  + Q +GM E       +  + P V +R  G    +    E +IV     +P
Sbjct: 275 VEE-RLGCPLQQVFGMAEGLVNYTRLD-DPPDVIMRTQGRP--ISPADEIRIVDDQG-EP 329

Query: 386 LPPNQLGEIWVRGPNVTPG 404
           +PP ++GE+  RGP    G
Sbjct: 330 VPPGEVGELLTRGPYTIRG 348

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  159 bits (405), Expect = 4e-45
 Identities = 91/221 (41%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +L++SGTTG  KGV LTHKN +A++  I+   +L    D   L V+P+FH+ GL V
Sbjct: 3   DPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDR-CLNVMPLFHIHGLIV 60

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL---AKNSLVRKFDIS 309
            L   L  G  VV   KF        I KYRVT +  VP I   L   AK +  +     
Sbjct: 61  SLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP--P 118

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL-VGVRRSGSAGT 368
            L+ + S +APL   +++  +K   G  + + YGMTE  A     NPL   VR+ GS G 
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVG- 175

Query: 369 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             AGVE  I+  D  +PLPP Q GEI +RGPNVT G  Y+N
Sbjct: 176 RPAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTAG--YLN 213

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  161 bits (409), Expect = 1e-44
 Identities = 107/379 (28%), Positives = 169/379 (44%), Gaps = 60/379 (15%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           + A+   +  + ++F +    V+ V+     LG+ K D V +   N +   +    +  +
Sbjct: 18  RTAIEFEE--KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA+A   N   +  EL  Q+ D+  K +IT  +   K+                      
Sbjct: 76  GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLI--------------------- 114

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFI 218
                 V F +L+          +  +++     + A ++Y+SGTTG  KGVI T+ N  
Sbjct: 115 --PGISVKFAELMN-----GPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHW 167

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA 278
             S + SA    + E D   L  +P+FH+ GLS IL   +  G  VV + KFD E   + 
Sbjct: 168 W-SAVGSALNLGLTEDD-CWLAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKL 224

Query: 279 IEKYRVTVWWVVPPIILALAK-------NSLVRKFDISSLKLVGSGAAPLGKELMEDCQ- 330
           ++   VT+  VV  ++  L +        S  R        L+G G AP  K L+E C+ 
Sbjct: 225 LQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCM------LLGGGPAP--KPLLEQCKE 276

Query: 331 KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ 390
           K IP   ++Q YGMTET + I   +P   + + GSAG  +   E +I        +PP +
Sbjct: 277 KGIP---VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDGVVVPPFE 331

Query: 391 LGEIWVRGPNVTPGIVYIN 409
            GEI V+GPNVT G  Y+N
Sbjct: 332 EGEIVVKGPNVTKG--YLN 348

Length = 483

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  160 bits (406), Expect = 3e-44
 Identities = 98/369 (26%), Positives = 147/369 (39%), Gaps = 94/369 (25%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           +++++++    V +++     LG+   D V I A N   + I  L ++A GA+     P 
Sbjct: 4   QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFH 172
            +  E++  + DS  ++V                                          
Sbjct: 64  SSPEEVAYILNDSGARVVF----------------------------------------- 82

Query: 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 232
                   V D PD      D A L+Y+SGTTG  KGV+LTH+N +A     +A  E++ 
Sbjct: 83  --------VEDKPD------DLATLIYTSGTTGNPKGVMLTHRNLLA---QAAALLEVIP 125

Query: 233 -ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWV 289
                 VL  LP+ HVF   +  Y  L  G  V     F    E  L  + + R TV++ 
Sbjct: 126 LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVN----FAESPETLLEDLREVRPTVFFA 181

Query: 290 VP--------PIILALAKNSLVRK--FD----ISSLKLVGSGAAPLGKELMEDCQKNIPG 335
           VP         I   +A    +++  F        L+   SG APL  E++E       G
Sbjct: 182 VPRVWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF--RALG 239

Query: 336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 395
             I +GYG+TET    ++  P  G  R G+ G  + GVE +I              GEI 
Sbjct: 240 IPILEGYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEVRIAED-----------GEIL 286

Query: 396 VRGPNVTPG 404
           VRGPNV  G
Sbjct: 287 VRGPNVMKG 295

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  162 bits (411), Expect = 4e-44
 Identities = 100/411 (24%), Positives = 159/411 (38%), Gaps = 80/411 (19%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           E++++ +    V  ++     LGI   D V IFA N   + I  L ++A+GA++      
Sbjct: 44  EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103

Query: 113 YTVSELSKQVKDSNPKLVIT-VPELWDKVKDLNLPAVLLGSKDKVSSS------GLISRS 165
            T  +L+  + +S  K++     EL D V  + L          V            +  
Sbjct: 104 STPEQLAYILNESESKVIFVENQELLDLVLPV-LEDCPKVVDLIVIIDLVREAVEAKALV 162

Query: 166 SKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 223
            ++     +         +       K  D A ++Y+SGTTG  KGV+LTH+N +A    
Sbjct: 163 LEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA---Q 219

Query: 224 ISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK 281
           ++   E++  +     VL  LP+ H+F  +      L  G  V+   K D    L  +++
Sbjct: 220 VAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF--KEDPRTLLEDLKE 277

Query: 282 YRVTVWWVVPPI-------IL-ALAKNSLVRK---------------------------- 305
            R TV   VP +       I+  +AK   VR+                            
Sbjct: 278 VRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLL 337

Query: 306 -FDI-----------SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 353
             D              ++   SG APL  EL+   +    G  I +GYG+TET A +S+
Sbjct: 338 VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR--SLGIPILEGYGLTETSAVVSV 395

Query: 354 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
             P       G+ G  + G+E +I              GEI VRGPNV  G
Sbjct: 396 NPP--DRFVLGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKG 433

Length = 613

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  154 bits (391), Expect = 1e-41
 Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 22/380 (5%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L R++  Y  K AL+  D   S ++++  + V +V+ +   LG+ K D V     NS  
Sbjct: 16  ILRRSARRYPDKTALVFGD--RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDA 73

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           + + +L     GA+    N + T  EL+  +  S  +  +  P L    +       LL 
Sbjct: 74  YALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAA---LALLP 130

Query: 152 SKDKVSSSGLISRSS--KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
               + S  L  R +    + F D  E +GSV + PDV +   D A +LY+SGT  + KG
Sbjct: 131 VDTLILSLVLGGREAPGGWLDFADWAE-AGSVAE-PDVELADDDLAQILYTSGTESLPKG 188

Query: 210 VILTHKNFIA--ASLMISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
            +LTH+  IA   S +++      G++  D + L  LP++H   L V L   L  G   V
Sbjct: 189 AMLTHRALIAEYVSCIVA------GDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNV 242

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            +   D E+ LR IE  R+T ++  P + ++L ++      D+SSL+    GA+ +  E+
Sbjct: 243 ILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEV 302

Query: 326 MEDCQKNIPGATIFQGYGMTETCAPI-SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 384
           +++ ++ +PG   +  YG TE  AP+ ++  P   +RR GSAG  V  VE ++V  D   
Sbjct: 303 LKELRERLPGLRFYNCYGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGN 360

Query: 385 PLPPNQLGEIWVRGPNVTPG 404
            + P ++GEI  R P +  G
Sbjct: 361 DVAPGEVGEIVHRSPQLMLG 380

Length = 523

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  150 bits (382), Expect = 5e-41
 Identities = 77/215 (35%), Positives = 111/215 (51%), Gaps = 8/215 (3%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A ++Y+SGTTG  KGV+LTH N  A +  +          D ++   LP+ HV GL  
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTAS-DVLLHA-LPLHHVHGLFN 146

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDIS 309
            L+  L  G  V  + +FD +         R+TV+  VP I   +L   +          
Sbjct: 147 ALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAAR 206

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 369
           +L+L  SG+A L   ++E  ++   G T+ + YGMTET   ++L NPL G RR G+ G  
Sbjct: 207 NLRLFVSGSAALPVPVLERWEE-RTGHTLLERYGMTETG--MALSNPLDGERRPGTVGLP 263

Query: 370 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           + GVE +IV  D  +PL   ++GEI VRGPNV   
Sbjct: 264 LPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSE 298

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  153 bits (390), Expect = 5e-41
 Identities = 103/394 (26%), Positives = 166/394 (42%), Gaps = 45/394 (11%)

Query: 46  LIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           L+DAD     E+ ++++  + V + ++    LG+   DVV    PN         G    
Sbjct: 47  LLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG---- 102

Query: 103 GAIASTANPVYTVSE---LSKQVKDSNPKLVITV-----PELWDKVKDL-----NLPAVL 149
           G  A  ANP+  + E   +++ ++ +  K+++T+      ++W KV ++      L  V+
Sbjct: 103 GEAAGIANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV 162

Query: 150 L--GSKDKVSSSGLISRSS------KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
               ++       L           +I+ F   +             +   D AA  ++ 
Sbjct: 163 EVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTG 222

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG+ K    TH N +A + +      L       V C LP+FHV  L V     L +G
Sbjct: 223 GTTGMPKLAQHTHGNEVANAWLG--ALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280

Query: 262 NCVV---SMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             VV     G     +       +E+YR+     VP +  AL +   V   DISSL+   
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDISSLRYAL 339

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQGYGMTE-TCAPISLENPLVGVRRSGSAGTLVAGVE 374
            GAAPL  E+    +    G  I +GYG+TE TC   S  NP  G RR GS G  +    
Sbjct: 340 CGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCV--SSVNPPDGERRIGSVGLRLPYQR 396

Query: 375 AQIVSVD----TLKPLPPNQLGEIWVRGPNVTPG 404
            ++V +D     L+    +++G + + GPNV  G
Sbjct: 397 VRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSG 430

Length = 632

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  150 bits (381), Expect = 2e-40
 Identities = 103/396 (26%), Positives = 176/396 (44%), Gaps = 38/396 (9%)

Query: 33  LFRNSASYSSKLALIDADSDESL---SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           +  ++A Y     ++    D S+   +++ F   V +++++   LG+   D V   A N+
Sbjct: 1   ILEHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNT 60

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDLNLP 146
                 +  V  +GA+  T NP  +  +++  +  +  K++    +     + +    LP
Sbjct: 61  HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAP-RLP 119

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
            V        +     S    + ++ +L+E      + P++   +  AA L Y+SGTTG 
Sbjct: 120 TVKAVVVYDDADMPETS-LPNVYAYEELLEEESPEYEWPELD--ENTAAGLCYTSGTTGN 176

Query: 207 SKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNC 263
            KGV+ +H++ +  +L  +    L + E D  VL V+PMFHV  +GL    Y     G  
Sbjct: 177 PKGVVYSHRSLVLHTLASALPDSLGLSESD-TVLPVVPMFHVNAWGLP---YAATMVGAK 232

Query: 264 VVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
           +V  G++      L  IE+ +VTV   VP I L L         D+SSL+ V  G + L 
Sbjct: 233 LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALP 292

Query: 323 KELMEDCQKNIPGATIFQGYGMTETCAPIS------------LENPLVGVRRSGSAGTLV 370
           + L+E  ++   G  +   +GMTET  P+              E   + +R     G  V
Sbjct: 293 RSLIEKLEER--GVEVIHAWGMTETS-PLGTVSRLKPHLVDLPEEEKLELRA--KQGRPV 347

Query: 371 AGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 404
            GVE +IV  +    LP +   +GE+ VRGP VT  
Sbjct: 348 PGVELRIVDDEG-NELPWDGKTVGELVVRGPWVTGS 382

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  148 bits (375), Expect = 1e-39
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 29/362 (8%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIA 101
           ++A+I    +E +++ Q    V KV+    + L + K + + I + NS+ + +    +  
Sbjct: 18  RIAIIT--EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAK 75

Query: 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL 161
           +  IA   N   T +EL  Q+KDS                      VL   K   + +  
Sbjct: 76  VECIAVPLNIRLTENELIFQLKDSGTT-------------------VLFVEKTFQNMALS 116

Query: 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL--YSSGTTGVSKGVILTHKNFIA 219
           + + S +     +  L        D  V++ ++A+ +  Y+SGTTG  KG +LT +N   
Sbjct: 117 MQKVSYVQRVISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFW 176

Query: 220 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 279
            +L  +   +L      +VL  LP+FH+ G+ +  +  L  G  ++   KF+   AL  I
Sbjct: 177 NALNNTFAIDLTMHDRSIVL--LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMI 234

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           EK++VTV   VP I  AL   S     ++ S++   +G AP  +ELM +      G    
Sbjct: 235 EKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFG 292

Query: 340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
           QG+GMTET   + + +     R+ GS G  V   + +++  +    +   ++GE+ +RGP
Sbjct: 293 QGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENK-NKVEVGEVGELLIRGP 351

Query: 400 NV 401
           NV
Sbjct: 352 NV 353

Length = 496

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  144 bits (365), Expect = 3e-38
 Identities = 105/381 (27%), Positives = 176/381 (46%), Gaps = 24/381 (6%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V+FL R+       K+AL   D   SL++ + +  V +  ++ R LGI +++ VL+   +
Sbjct: 7   VYFLDRHLNEGRGDKIALYYDD--GSLTYGELQEEVNRWGNALRELGIERENRVLLILLD 64

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP 146
           +  FP  F G I IGA+    N + T  +    + DS  ++++   ELW+ +K      P
Sbjct: 65  TPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDP 124

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
            +    +  +   G    +    S+  LI  + +  ++   +    D A  LYSSG+TG 
Sbjct: 125 HL----RHVIVVGGAGPGAL---SYAQLI--ATAAEELEAAATSADDMAFWLYSSGSTGR 175

Query: 207 SKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
            KGV+  H + +  +    A+ + V  +  D VV     +F  +GL   LY  L  G   
Sbjct: 176 PKGVVHLHHDMLVTA---EAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATT 232

Query: 265 VSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
           V M +    +     IE+Y+ TV++ VP +  A+       + D+SSL+L  S    L  
Sbjct: 233 VLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPA 292

Query: 324 ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 383
           E+    ++   G  I  G G TE    I L N   G  + G++G  V G E ++V  D  
Sbjct: 293 EIGYRWKELF-GLEILDGIGSTEMLH-IFLSN-RPGAVKYGTSGKPVPGYEVKLVDEDG- 348

Query: 384 KPLPPNQLGEIWVRGPNVTPG 404
           + +   ++GE+WVRG +   G
Sbjct: 349 EEVADGEIGELWVRGDSSAAG 369

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  141 bits (357), Expect = 8e-37
 Identities = 107/355 (30%), Positives = 170/355 (47%), Gaps = 30/355 (8%)

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
           LG+ K D V +  PN + +PI   G++  G I    NP+YT  EL  Q+ DS  K ++ V
Sbjct: 69  LGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIV 128

Query: 134 PE----LWDKVKDLNLPAVLLGSKDKVSSSG---LISRSSKIV-------------SFHD 173
                 L   V    +  V+L       S+    L++   K +             SF  
Sbjct: 129 SNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRS 188

Query: 174 LIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELV 231
            +     +  + P++     D A L Y+ GTTGV+KG +LTH+N +A       A+  L+
Sbjct: 189 ALHKGRRMQYVKPELV--PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLL 246

Query: 232 GELDHVVLCVLPMFHVFGLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                +V+  LP++H+F L+V  +L+ +L   N +++  + DI   ++ ++KY  T    
Sbjct: 247 HPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPR-DIPGFVKELKKYPFTAITG 305

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
           V  +  AL  N   ++ D SSLKL   G   + + + E   K + G  + +GYG+TE C+
Sbjct: 306 VNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVK-LTGQYLLEGYGLTE-CS 363

Query: 350 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           P+   NP      SGS G  V   E ++V  D    +PP + GE+WV+GP V  G
Sbjct: 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLG 417

Length = 560

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  138 bits (350), Expect = 1e-36
 Identities = 90/348 (25%), Positives = 139/348 (39%), Gaps = 50/348 (14%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            L++ +      +++ +   LG+   DVV    PN   F + +L    IGA+ +   P+Y
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
              EL   ++ +  +++  VP+ +                                    
Sbjct: 61  RERELGFILRQARARVLF-VPDEFRGF--------------------------------- 86

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     +PD      D A LLY+SGTTG  KGV+ TH   +A          L   
Sbjct: 87  ------DYAAMPD------DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP- 133

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D VVL   P+ H+ G    L   L  G  VV   ++D   AL  I ++ VT      P 
Sbjct: 134 -DDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPF 192

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 353
           +  L   +     D+ SL++   G AP+ +EL     +   GA + + YGMTE       
Sbjct: 193 LADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAE-ALGAKVVRAYGMTEVPLVTVG 251

Query: 354 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 401
                  +R+ + G  V GVE +IV  D    +PP + GE+ VRGP +
Sbjct: 252 TPDDPDDKRAATDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQL 298

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  136 bits (344), Expect = 2e-36
 Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 6/213 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D AA++Y+SG+TG  KGV+L+H+N  A +  I+ + EL    D  +L VLP    +GLS 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTE--DDRILAVLPFSFDYGLSQ 60

Query: 253 ILYDQLQKGNCVVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
           +L    + G  +V   +F      L+ + K R+T +  VP     L +   + + D  SL
Sbjct: 61  LLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSL 119

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 371
           + + +    L  + +   ++  P A +F  YG+TE      L    +  RR  S G  + 
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELD-RRPDSIGKAIP 178

Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            VE  +V  D      P ++GE+  RG NV  G
Sbjct: 179 NVELWVVDEDG-NRCAPGEVGELVHRGANVMKG 210

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  137 bits (348), Expect = 2e-36
 Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 28/225 (12%)

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV-LCVLPM 244
           D+       A ++++SG+TG  K V+ T  N +A++       E +G       L  LP+
Sbjct: 71  DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASAR---GSAENLGLTPDDNWLLSLPL 127

Query: 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP----IILALAKN 300
           FHV GL+ I+   L  G  +V   KFD E    A+E + VT   +VP     ++ +L   
Sbjct: 128 FHVSGLA-IVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR 186

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQGYGMTETCAPISLENPLVG 359
            L      SSL+ V  G AP+   L+E   Q+ IP   ++  YGMTET + ++   P   
Sbjct: 187 WL------SSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVATLKPDDF 237

Query: 360 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           + + GS G  + G E +IV           Q GEI VRGP++  G
Sbjct: 238 LAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLG 273

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (346), Expect = 2e-35
 Identities = 111/428 (25%), Positives = 186/428 (43%), Gaps = 58/428 (13%)

Query: 17  PPLV---LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH 73
           PP V   + +    S+   L  +   Y+ + A I     +++++ +   +   ++   + 
Sbjct: 10  PPGVPAEIDASQYPSLADLLEESFRQYADRPAFICMG--KAITYGELDELSRALAAWLQS 67

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-- 131
            G+ K   V I  PN + +P+    V+  G +    NP+YT  EL  Q+KDS  + ++  
Sbjct: 68  RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVL 127

Query: 132 -----TVPELWDKVKDLNLPAVLLGSK-DKVSSSGLI-----SRSSKIV---------SF 171
                TV ++  K     +  V++ S  D +   G I      R  K+V          F
Sbjct: 128 ENFATTVQQVLAKT---AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRF 184

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +D +      T  P V +   D A L Y+ GTTGVSKG  L H+N +A  L + A  +  
Sbjct: 185 NDALAEGARQTFKP-VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPA 243

Query: 232 ----GELDHVV-LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----------FDIEMAL 276
                  D +  +C LP++H+F L+V           ++ M             DI   +
Sbjct: 244 FEKKPRPDQLNFVCALPLYHIFALTV---------CGLLGMRTGGRNILIPNPRDIPGFI 294

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
           + ++KY+V ++  V  +  AL  N    K D S L +   G   + + + E   + + G 
Sbjct: 295 KELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLE-MTGC 353

Query: 337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 396
            I +GYG++ET +P++  NP+     SG+ G  +   E  I   D    LP  + GEI +
Sbjct: 354 PITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICI 411

Query: 397 RGPNVTPG 404
           RGP V  G
Sbjct: 412 RGPQVMAG 419

Length = 557

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  136 bits (344), Expect = 3e-35
 Identities = 111/377 (29%), Positives = 178/377 (47%), Gaps = 39/377 (10%)

Query: 49  ADSDE-SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           ADS   SL++ +  +  + +S   + L   + + + I  P+S+   +  L ++  G +  
Sbjct: 1   ADSTGGSLTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKVPV 59

Query: 108 TANPVYTVSE--LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL---I 162
             N  +T  E  L    K +  K VIT     +K+K L    VLL     V    L   I
Sbjct: 60  MLN--FTAGEEGLRSACKQAGIKTVITSRAFLEKLK-LEGLVVLLEGVRIVYLEDLRAKI 116

Query: 163 SRSSKIVSFHDLIELSGSVTD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI 218
           S++ K+ +F     L+  +      +     K  D A +L++SG+ G+ KGV+L+H+N +
Sbjct: 117 SKADKLKAF-----LAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF------DI 272
           A    I+A  +L    + V+L  LP+FH FGL+V L   L  G     +         D 
Sbjct: 172 ANIDQIAAVIDLNT--EDVLLGALPLFHAFGLTVTLLLPLLTG-----LRVVYYPNPLDA 224

Query: 273 EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332
           +     I  Y+ T+    P  +   A+N+     D SSL+LV +GA  L +   E  ++ 
Sbjct: 225 KKIAELIRDYKATILCGTPTFLRGYARNA--HPEDFSSLRLVVAGAEKLPEATRELFEEK 282

Query: 333 IPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 392
             G  I +GYG TE    IS+  P+    + G+ G  + G+E +IVS +T + LP  + G
Sbjct: 283 F-GIRILEGYGATECSPVISVNTPMG--NKPGTVGRPLPGIEVRIVSPETHEELPIGEGG 339

Query: 393 EIWVRGPNVTPGIVYIN 409
            + VRGPNV  G  Y+N
Sbjct: 340 LLLVRGPNVMSG--YLN 354

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  136 bits (344), Expect = 6e-35
 Identities = 115/410 (28%), Positives = 185/410 (45%), Gaps = 62/410 (15%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L R +A Y  + AL+  D     ++ +F   V  ++     LGI K D V I+APN   
Sbjct: 21  LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------------VPE 135
           + +       IGAI  T NP Y +SEL   +  S  K +I                  PE
Sbjct: 81  WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPE 140

Query: 136 LWD----KVKDLNLPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD--IP 185
           L      +++   LP     + LG +          +   +++F +L+ L  +V D  + 
Sbjct: 141 LATCEPGQLQSARLPELRRVIFLGDE----------KHPGMLNFDELLALGRAVDDAELA 190

Query: 186 DV--SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
               ++   D   + Y+SGTTG  KG  LTH+N +     I    +L  E D + + V P
Sbjct: 191 ARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL-TEEDRLCIPV-P 248

Query: 244 MFHVFG--LSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           ++H FG  L  +    +  G  +V  G  FD    L A+E+ R T  + VP + +A   +
Sbjct: 249 LYHCFGMVLGNL--ACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDH 306

Query: 301 SLVRKFDISSLK---LVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMTETCAPISL-- 353
               +FD+SSL+   + GS   P   E+M+      ++   TI   YGMTET +P+S   
Sbjct: 307 PDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKMHMSEVTI--AYGMTET-SPVSTQT 360

Query: 354 --ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 401
             ++PL   +R  + G  +  +E +IV  +T + +P  + GE+  RG +V
Sbjct: 361 RTDDPL--EKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSV 408

Length = 559

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  134 bits (339), Expect = 1e-34
 Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 19/359 (5%)

Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+       ++    +   ++++    LG+   D V +    S      +L  +  GA+ 
Sbjct: 21  IETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80

Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS 166
              N  YT++EL   + D+ P LV+  P  +  +  +   A   G+   V +       S
Sbjct: 81  LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKI---AAAAGAP-HVETLDADGTGS 136

Query: 167 KIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
                  L+E  + +  D   V     D AA+LY+SGTTG SKG +L+H N ++ +L + 
Sbjct: 137 -------LLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTL- 188

Query: 226 AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
                    D V++  LP+FH  GL V     L  G  ++ + KFD +  L  +   R T
Sbjct: 189 -VDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RAT 245

Query: 286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 345
           V   VP     L +   + +   + ++L  SG+APL  E   + Q+   G  I + YGMT
Sbjct: 246 VMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMT 304

Query: 346 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           ET    S  NP  G RR+G+ G  + GV  ++   +T   LPP ++G I V+GPNV  G
Sbjct: 305 ETNMNTS--NPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKG 361

Length = 504

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  131 bits (331), Expect = 3e-33
 Identities = 96/358 (26%), Positives = 163/358 (45%), Gaps = 35/358 (9%)

Query: 73  HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK---- 128
           H  +   D + +  PN + +P+   G +  G I    NP+YT  E+  Q  DS  K    
Sbjct: 69  HTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVC 128

Query: 129 --------------------LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
                               +V  V ++   +K L + AV+   K  V +  L     + 
Sbjct: 129 LANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL----PQA 184

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
           V F+D +   G+   + + + +  D A L Y+ GTTGV+KG +LTH+N +A  L   A  
Sbjct: 185 VKFNDALAK-GAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM 243

Query: 229 E-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEKYRVTV 286
              + E   +++  LP++H++  +      +  GN  ++     D+   ++ + K++ + 
Sbjct: 244 GSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG 303

Query: 287 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 346
           +  +  + +AL  N   RK D S+LKL  SG   L     E   K + G  I +GYGMTE
Sbjct: 304 FVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAE-RWKEVTGCAICEGYGMTE 362

Query: 347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           T +P+   NP   + + G+ G  V     +++  D    LP  ++GE+ V+GP V  G
Sbjct: 363 T-SPVVSVNPSQAI-QVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKG 417

Length = 562

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  129 bits (326), Expect = 1e-32
 Identities = 104/411 (25%), Positives = 160/411 (38%), Gaps = 86/411 (20%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D D +E+L++++       ++   + LG    D VL+ AP  + F   F G +  GAIA 
Sbjct: 17  DDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAV 75

Query: 108 TANP----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 163
            A P       ++ L+  + D+  + V+T   +   ++        L             
Sbjct: 76  PAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLL----------- 124

Query: 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 223
               ++   D +    +  D         D A L Y+SG+TG  KGV++TH N +A    
Sbjct: 125 ----LLIAADDLAALAA-ADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRA 179

Query: 224 ISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMA---- 275
           I+    L    D  V   LP++H    + GL   LY     G  VV M      +A    
Sbjct: 180 IARAFGL-DPDDVGVSW-LPLYHDMGLIGGLLQPLYA----GFPVVLMSP----LAFLRR 229

Query: 276 ----LRAIEKYRVTVWWVVPPIILALAKNSLVRK--------FDISSLKLVGSGAAPLGK 323
               L AI +YR TV    P     L     VR+         D+SS ++  +GA P+  
Sbjct: 230 PLRWLEAISRYRATVSG-APNFAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEPVRA 284

Query: 324 ELMED-CQKNIP-G---ATIFQGYGMTETCAPIS---LENPLV----------------- 358
           + +E   ++  P G         YG+ E    +S        V                 
Sbjct: 285 DTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVA 344

Query: 359 -----GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
                  R   S G  + G E +IV  +T +PLP  ++GEIWVRGP+V  G
Sbjct: 345 AADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAG 395

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  126 bits (318), Expect = 1e-32
 Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 15/224 (6%)

Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             D AA  ++ GTTG  K    +H+N +A + M +    L      V+L  LP+FHV G 
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLG--PGDVLLNGLPLFHVGGA 58

Query: 251 SVILYDQLQKGNCVV---SMGKFDIEMA---LRAIEKYRVTVWWVVPPIILALAKNSLVR 304
            V     L +G  VV     G  +  +     + +E+YRVT+   VP ++ AL +  L  
Sbjct: 59  IVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGD 118

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG 364
             DISSL+   +GAAPL  E+    +  + G  + +GYGMTE     ++ NP  G RR G
Sbjct: 119 A-DISSLRYALTGAAPLPVEVARRFEA-VTGVPVVEGYGMTEGTGVSAI-NPRGGPRRPG 175

Query: 365 SAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRGPNVTPG 404
           S G  +     ++  +D      +   P ++G + +RGPNV PG
Sbjct: 176 SVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPG 219

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  127 bits (320), Expect = 8e-32
 Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 31/384 (8%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           AL+        ++ Q    V +++     LG+   D V I+APN   + +       IGA
Sbjct: 36  ALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPEL--WDKVKDLN--LPAVLLGSKDKVSSSG 160
           I    NP Y  SEL   +  S  + VI        D    L   LP +  G    ++   
Sbjct: 96  ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACER 155

Query: 161 L----------ISRSSKIVSFHDLIELSGSVTDIPDVSVKQT----DAAALLYSSGTTGV 206
           L           +     +++H+L     +V+       + +    D   + Y+SGTTG 
Sbjct: 156 LPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGF 215

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCV-LPMFHVFGLSVILYDQLQKGNCVV 265
            KG  L+H N +     ++   E +G  +H  LCV +P++H FG+ +     +  G C+V
Sbjct: 216 PKGATLSHHNILNNGYFVA---ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLV 272

Query: 266 SMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
              + FD    L+A+E+ R T  + VP + +A   +     FD+SSL+      AP   E
Sbjct: 273 YPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIE 332

Query: 325 LMEDCQKNIPGATIFQGYGMTETCAPISL----ENPLVGVRRSGSAGTLVAGVEAQIVSV 380
           +M      +  A +   YGMTET +P+SL     + L   RR  + G     +E ++V  
Sbjct: 333 VMRRVMDEMHMAEVQIAYGMTET-SPVSLQTTAADDL--ERRVETVGRTQPHLEVKVVDP 389

Query: 381 DTLKPLPPNQLGEIWVRGPNVTPG 404
           D    +P  ++GE+  RG +V  G
Sbjct: 390 DG-ATVPRGEIGELCTRGYSVMKG 412

Length = 558

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  124 bits (313), Expect = 2e-31
 Identities = 84/350 (24%), Positives = 142/350 (40%), Gaps = 40/350 (11%)

Query: 72  RHL----GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
           RHL    G+   D V +    S    +  L V+  GA     +P Y    L+  ++D+  
Sbjct: 14  RHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGA 73

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187
           +L++T   L  ++  L LP +LL   +  +                           PD 
Sbjct: 74  RLLLTDSALASRLAGLVLPVILLDPLELAALD------------------DAPAPPPPDA 115

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 247
                D A ++Y+SG+TG  KGV++TH++    +L+    +    + D  VL        
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRS--LVNLLAWLARRYGLDPDDRVLQFAS--LS 171

Query: 248 FGLSVI-LYDQLQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           F  SV  ++  L  G  +V       + D  +    I ++ VTV  + P ++  LA    
Sbjct: 172 FDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA---A 228

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET---CAPISLENPLVG 359
                ++SL+LV  G   L   L++  +   PGA +   YG TET        ++     
Sbjct: 229 ALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAP 288

Query: 360 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
                  G  +A     ++  D L+P+P   +GE+++ GP V  G  Y+N
Sbjct: 289 RESPVPIGRPLANTRLYVLD-DDLRPVPVGVVGELYIGGPGVARG--YLN 335

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  125 bits (315), Expect = 2e-31
 Identities = 90/374 (24%), Positives = 155/374 (41%), Gaps = 8/374 (2%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           H L   +A      AL+  D   +L+++     V+ ++   R LG+ + + V I+    +
Sbjct: 4   HLLEDAAARLPDATALVHHD--RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRL 61

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
                  G    G +    NP+    +++  + D N +L++T  E  D +         L
Sbjct: 62  ETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDL 121

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
            +   V      S            +L       P   V  +D AA+LY+SG+TG  KGV
Sbjct: 122 RTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGV 181

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
           +L+H+N +A +  ++ + E     D  +L VLP+   +G +  L      G  VV     
Sbjct: 182 VLSHRNLVAGAQSVATYLEN--RPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYL 238

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
                L+A+EK+ +T    VPP+   LA+     +    SL+ + +    + +  +   +
Sbjct: 239 LPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLR 297

Query: 331 KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ 390
             +P A +F  YG+TE      L    V  RR  S G  +   E  ++  D  +   P +
Sbjct: 298 SFLPNARLFLMYGLTEAFRSTYLPPEEVD-RRPDSIGKAIPNAEVLVLREDGSECA-PGE 355

Query: 391 LGEIWVRGPNVTPG 404
            GE+  RG  V  G
Sbjct: 356 EGELVHRGALVAMG 369

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (315), Expect = 3e-31
 Identities = 108/381 (28%), Positives = 171/381 (44%), Gaps = 42/381 (11%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIG 103
           A+I A S E +++ + ++   +++H  R LG+ + DVV I   N+   F + +    + G
Sbjct: 2   AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRS-G 60

Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 163
              +  N   T +E++  V DS  K++I    L D   +L    +  G    +  +G + 
Sbjct: 61  LYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAEL-AAELPAGVPLLLVVAGPVP 119

Query: 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS 221
                 S+ + +  +   T I D    +T  A +LYSSGTTG  KG+   L   +   A 
Sbjct: 120 GFR---SYEEALA-AQPDTPIAD----ETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAP 171

Query: 222 LMISA--HQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMA 275
            M+ A     + G  D V L   P++H     FG+S      L  G  VV M KFD E A
Sbjct: 172 GMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSA-----LALGGTVVVMEKFDAEEA 226

Query: 276 LRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAPLG---KELMED 328
           L  IE+YRVT   +VP +   +L L +   VR ++D+SSL++    AAP     K  M D
Sbjct: 227 LALIERYRVTHSQLVPTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAPCPVEVKRAMID 284

Query: 329 CQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 388
                 G  I + Y  +E    +++      +   GS G  V G E +I+  +    LPP
Sbjct: 285 WW----GPIIHEYYASSEGGG-VTVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPP 337

Query: 389 NQLGEIWVRGPNVTPGIVYIN 409
            ++G ++           Y N
Sbjct: 338 GEIGTVYFEMD--GYPFEYHN 356

Length = 502

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  124 bits (314), Expect = 3e-31
 Identities = 99/361 (27%), Positives = 161/361 (44%), Gaps = 35/361 (9%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D+ +S+++F   +++ +      GI + DVV +   NS  F         +GA+    N 
Sbjct: 25  DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                E++  + D+  KL++ V E +D +  L  P +++ +  +  S  L          
Sbjct: 85  RLAADEVAYILGDAGAKLLL-VDEEFDAIVALETPKIVIDAAAQADSRRLAQ-------- 135

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI------AASLMIS 225
                  G +   P  +V  TD   L+Y+SGTT   KGV+ ++ N          +L ++
Sbjct: 136 -------GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLT 188

Query: 226 AHQEL--VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 283
           A + L  VG L HV    LP     G++V     L  G  +    +FD E  L AIE++R
Sbjct: 189 ASERLLVVGPLYHVGAFDLP-----GIAV-----LWVGGTLRIHREFDPEAVLAAIERHR 238

Query: 284 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 343
           +T  W+ P ++  +       +FD+ SL     G     +  + D  +    A     YG
Sbjct: 239 LTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYG 298

Query: 344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 403
           +TETC+  +L      + + GS G  +A VE +I      + LPPN  GEI +RGP VT 
Sbjct: 299 LTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTK 357

Query: 404 G 404
           G
Sbjct: 358 G 358

Length = 497

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  122 bits (309), Expect = 6e-31
 Identities = 85/358 (23%), Positives = 143/358 (39%), Gaps = 62/358 (17%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++         ++ + +  GI     V +   NSI   +     + +GA  +  N   T 
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
           +E + Q++D + +L++T                          S L  +  +  S   + 
Sbjct: 61  NERTNQLEDLDVQLLLT-------------------------DSLLEEKDFQADSLDRI- 94

Query: 176 ELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                     + S+  +      A L+++SGTTG  K V  T +N   AS + S      
Sbjct: 95  ----EAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRN-HYASAVGSKENLGF 149

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            E D+ +L  LP++H+ GLS++    ++     +      +   L  I   RVT   +VP
Sbjct: 150 TEDDNWLL-SLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVP 205

Query: 292 PIILALAK----NSLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQGYGMTE 346
             +  L      N  +RK       L+G  A P    L+E+  Q  +P   I+  YGMTE
Sbjct: 206 TQLNRLLDEGGHNENLRKI------LLGGSAIPA--PLIEEAQQYGLP---IYLSYGMTE 254

Query: 347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           TC+ ++   P +   R    G  +AG E +I  VD  +       GEI V+G N+  G
Sbjct: 255 TCSQVTTATPEMLHAR-PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKG 305

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  124 bits (312), Expect = 8e-31
 Identities = 108/398 (27%), Positives = 183/398 (45%), Gaps = 41/398 (10%)

Query: 34  FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93
           F +  +Y S    I     + L   QF + ++        L + K D V +  PN + +P
Sbjct: 38  FADRPAYHSFGKTITYREADQLV-EQFAAYLLGE------LQLKKGDRVALMMPNCLQYP 90

Query: 94  ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK----DLNLPAVL 149
           I   GV+  G      NP+YT  EL  Q+ DS   +++ +      V+    D  +  V+
Sbjct: 91  IATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVI 150

Query: 150 ---LGSKDKVSSSGLIS-------------RSSKIVSFHDLIELSGSVTDIPDVSVKQTD 193
              LG       + L++             R +  + F + + L G    +P + ++  D
Sbjct: 151 TTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALAL-GRKHSMPTLQIEPDD 209

Query: 194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-----ELDHVVLCVLPMFHVF 248
            A L Y+ GTTGV+KG +LTH+N +A   M  AHQ L G     E   VV+  LP++H+F
Sbjct: 210 IAFLQYTGGTTGVAKGAMLTHRNLVAN--MQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267

Query: 249 GLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF 306
            L+   +++ ++   N ++S  + D+   ++ ++K R T +  V  +   L       + 
Sbjct: 268 ALTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQI 326

Query: 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA 366
           D SSLK+   G   + + + E   K + G T+ + YG+TET +P +  NPL     +GS 
Sbjct: 327 DFSSLKMTLGGGMAVQRSVAER-WKQVTGLTLVEAYGLTET-SPAACINPLTLKEYNGSI 384

Query: 367 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           G  +   +A I   D    L   ++GE+ ++GP V  G
Sbjct: 385 GLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKG 421

Length = 560

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  125 bits (316), Expect = 9e-31
 Identities = 108/413 (26%), Positives = 176/413 (42%), Gaps = 56/413 (13%)

Query: 28   SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +       +    S+LA+ D+   E LS+ +  +  + ++   +   +  ++ V I  P
Sbjct: 616  PLAEAWIDTAKRNWSRLAVADSTGGE-LSYGKALTGALALARLLKRE-LKDEENVGILLP 673

Query: 88   NSIHFPICFLGVIAIGAIASTANPVYTVSE--LSKQVKDSNPKLVIT----VPELWDKVK 141
             S+   +  L ++  G +    N  YT SE  L   ++ +  K VIT    + +L +K  
Sbjct: 674  PSVAGALANLALLLAGKVPVNLN--YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGF 731

Query: 142  DLNLP----AVLL-------GSKDKVSSSGLI----SRSSKIVSFHDLIELSGSVTDIPD 186
            DL LP     + L          DK+++        +R  K +                 
Sbjct: 732  DLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLKRLYGPT------------- 778

Query: 187  VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
               K  D A +++SSG+ G  KGV+L+H N ++    IS         D V+L  LP FH
Sbjct: 779  --FKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS--DVFNLRNDDVILSSLPFFH 834

Query: 247  VFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
             FGL+V L+  L +G  VV      D     + + K+R T+    P  +    +N  +  
Sbjct: 835  SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP 894

Query: 306  FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP--------- 356
               +SL+LV +GA  L  E+ +  ++   G  I +GYG TET    S+  P         
Sbjct: 895  LMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKR 953

Query: 357  LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
              G +  GS G  + GV  +IV  +T + LPP + G I + GP V  G  Y+ 
Sbjct: 954  QTGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKG--YLG 1003

Length = 1146

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  123 bits (310), Expect = 1e-30
 Identities = 95/405 (23%), Positives = 165/405 (40%), Gaps = 55/405 (13%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           + FL R +  Y  + A++  D     ++ +      +++ +   LGI K DVV + APN+
Sbjct: 7   LSFLERAAKVYPDRTAVVYGDR--RYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNT 64

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL 149
                   GV   GA+    N      +++  +  S  K++    E     ++      L
Sbjct: 65  PAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEA---LAL 121

Query: 150 LGSKDKVSSSGLIS----RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
           L +K+ + +  ++       S+   + DL+   G    +P     + D  +L Y+SGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLLA-GGDPDPLPIPPDDEWDPISLNYTSGTTG 180

Query: 206 VSKGVILTHKN-FIAASLMISAHQELVGELDH--VVLCVLPMFH------VFGLSVILYD 256
             KGV+ TH+  ++ A   +         +    V L  LPMFH       + ++ +   
Sbjct: 181 NPKGVVYTHRGAYLNALGNVIEW-----GMPDRPVYLWTLPMFHCNGWCFPWAITAV--- 232

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVG 315
               G   V + K D       IEK++VT     P ++  LA      K  +   ++++ 
Sbjct: 233 ----GGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLPRPVRVMT 288

Query: 316 SGAAPLGK--ELMEDCQKNIPGATIFQGYGMTETCAPIS-------LENPLVGVR----- 361
           +GA P     + ME+      G  +   YG+TET  PI+        +      R     
Sbjct: 289 AGAPPPPAVIKKMEEL-----GFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKA 343

Query: 362 RSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 404
           R G     V   E  +V  +T+K +P +   +GEI +RG  V  G
Sbjct: 344 RQGVR--YVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKG 386

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  123 bits (310), Expect = 2e-30
 Identities = 100/363 (27%), Positives = 166/363 (45%), Gaps = 35/363 (9%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
           +H  +   D + +  PN + +PI   G +  G I    NP+YT  E+  Q KDS  + ++
Sbjct: 68  QHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALV 127

Query: 132 TVPELWDKVKDLNLPAV----LLGSK-----------------DKVSSSGLISRSSKIVS 170
            +      V+++ LP      L+ +K                 DKV          + V 
Sbjct: 128 YLNMFGKLVQEV-LPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVP 186

Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--- 227
           F   +   G    +  V V   D A L Y+ GTTG++KG +LTH N +A  L + A    
Sbjct: 187 FKQALRQ-GRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 228 -----QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEK 281
                Q L+ E   V++  LP++H++  +      +  GN  V+     DI   ++ + K
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGK 305

Query: 282 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG 341
           +R +    +  + +AL  +   +  D S+LKL  SG   L K   E  ++ + G TI +G
Sbjct: 306 WRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVEG 364

Query: 342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 401
           YG+TET +P++  NP   + R G+ G  V G   +++  D  + LP  + GE+ ++GP V
Sbjct: 365 YGLTET-SPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNE-LPLGERGELCIKGPQV 422

Query: 402 TPG 404
             G
Sbjct: 423 MKG 425

Length = 562

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  122 bits (308), Expect = 3e-30
 Identities = 103/386 (26%), Positives = 170/386 (44%), Gaps = 42/386 (10%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           A++    +   +  +F   V+ ++     LG+   DVV I A NS  +    L V   G 
Sbjct: 23  AVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGG 82

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVIT---VPELWDKVKDLNLPA----VLLGSKDKVS 157
           I +  N  ++  E    +    P +++T       ++++++  LP+    V L S     
Sbjct: 83  IVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
              L S  +      ++++     T   D +    DA  + ++SGTTG  KGV ++H   
Sbjct: 143 FIFLNSFLTT-----EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSAL 197

Query: 218 IAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276
           I  SL   A   +VG   D V L   P+ H+ GLS  L   L  G C V + KFD + AL
Sbjct: 198 IVQSL---AKIAIVGYGEDDVYLHTAPLCHIGGLSSAL-AMLMVGACHVLLPKFDAKAAL 253

Query: 277 RAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333
           +AI+++ VT    VP +   +++L + S+  K   S  K++ +G   L   L+ D +K  
Sbjct: 254 QAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKIL-NGGGSLSSRLLPDAKKLF 312

Query: 334 PGATIFQGYGMTETCAPIS--------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 385
           P A +F  YGMTE C+ ++        LE+P   ++      +       Q   V   KP
Sbjct: 313 PNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVH---QPQGVCVGKP 369

Query: 386 LP----------PNQLGEIWVRGPNV 401
            P           +++G I  RGP+V
Sbjct: 370 APHVELKIGLDESSRVGRILTRGPHV 395

Length = 563

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  121 bits (305), Expect = 8e-30
 Identities = 96/368 (26%), Positives = 164/368 (44%), Gaps = 51/368 (13%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
           R  G+   D V +F PN   F I F G++ +GA+    +P++   ELS ++ D+  ++++
Sbjct: 76  RQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL 135

Query: 132 TVPELWDKVKD----LNLPAVLLGSKDKVSSS-------GLISRSSKIVS-FHDLIE-LS 178
            + +L   V+      +L  V++ S   V  +         +       +   DL+  L 
Sbjct: 136 ALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALR 195

Query: 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI---AASLMISAHQELVGELD 235
                +P         AAL Y+ GTTG+ KG   T ++ +   AA+  ++    +VG  D
Sbjct: 196 ACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGED 251

Query: 236 HVVLCVLPMFHV----FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            V L  LP F +    FGL   L+     G  +V + ++D    + A+E+YRVT   ++ 
Sbjct: 252 SVFLSFLPEFWIAGENFGLLFPLFS----GATLVLLARWDAVAFMAAVERYRVTRTVMLV 307

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ---KNIPGATIFQG-YGMTET 347
              + L  +    ++D+SSL+ V        K+L  D +   + + G+ + +  +GMTET
Sbjct: 308 DNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTET 365

Query: 348 --CAPIS---------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 396
             C   +         L +  V V      G  V G E +I   +T + LP    GEI V
Sbjct: 366 HTCDTFTAGFQDDDFDLLSQPVFV------GLPVPGTEFKICDFETGELLPLGAEGEIVV 419

Query: 397 RGPNVTPG 404
           R P++  G
Sbjct: 420 RTPSLLKG 427

Length = 567

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  120 bits (302), Expect = 2e-29
 Identities = 97/348 (27%), Positives = 150/348 (43%), Gaps = 44/348 (12%)

Query: 75  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
           G+   D VLI   N   F    L    +GAIA   N   T  E++  V D    +V+T  
Sbjct: 63  GVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEA 122

Query: 135 ELW-------DKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---SVTDI 184
            L        D V  L+   V  GS D             ++ + DL+  +G   +  DI
Sbjct: 123 ALAPVATAVRDIVPLLSTVVVAGGSSD-----------DSVLGYEDLLAEAGPAHAPVDI 171

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
           P+ S      A ++Y+SGTTG  KG +LTH N    ++            D V    +P+
Sbjct: 172 PNDS-----PALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSD-VGFVGVPL 225

Query: 245 FHVFGL-SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           FH+ G+ S++    L     +  +G FD    L  +E  +VT  ++VP    A+      
Sbjct: 226 FHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA 285

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE----TCAPISLENPLVG 359
           R  D+ +L+++  GAAP    L+       P A I   +G TE    TC        L+G
Sbjct: 286 RPRDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCM-------LLG 337

Query: 360 ---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
              +R+ GS G ++  V A++V  + +  +P  ++GEI  R P +  G
Sbjct: 338 EDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSG 384

Length = 542

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  119 bits (300), Expect = 3e-29
 Identities = 97/385 (25%), Positives = 164/385 (42%), Gaps = 33/385 (8%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           H L      Y  + AL+  D+   L++ Q    + +   +F  LG+   D V + + N  
Sbjct: 16  HLLVSALKRYPDRPALVLGDT--RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLN-- 71

Query: 91  HFPICFLGVIAIGA-----IASTA-NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                   ++AIGA     +  TA +P+ ++ + +  ++D+    +I      D    + 
Sbjct: 72  ----RPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIV-----DPAPFVE 122

Query: 145 LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGT 203
               LL     +     +      V   DL+  +      P V+     D A L Y+ GT
Sbjct: 123 RALALLARVPSLKHVLTLGPVPDGV---DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGT 179

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG  KGV+ TH++    + +  A  E   +     L   P+ H  G        L +G  
Sbjct: 180 TGKPKGVMGTHRSIATMAQIQLAEWEWPADPR--FLMCTPLSHAGGAFF--LPTLLRGGT 235

Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
           V+ + KFD    LRAIE+ R+T  ++VP +I AL  +  +R  D+SSL+ V  GA+P+  
Sbjct: 236 VIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSP 295

Query: 324 ELMEDCQKNIPGATIFQGYGMTETCAPISL----ENPLVGVRRSGSAGTLVAGVEAQIVS 379
             + +  +   G    Q YG TE    I+     ++     +R  S G    G+   ++ 
Sbjct: 296 VRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD 354

Query: 380 VDTLKPLPPNQLGEIWVRGPNVTPG 404
            +  + +   ++GEI VRGP V  G
Sbjct: 355 -EDGREVAQGEVGEICVRGPLVMDG 378

Length = 524

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  119 bits (300), Expect = 4e-29
 Identities = 111/370 (30%), Positives = 168/370 (45%), Gaps = 36/370 (9%)

Query: 43  KLAL--IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100
           K+AL  +DA   E  ++ + K +  K ++  + LG+ K D V IF P         LG +
Sbjct: 60  KVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGAL 119

Query: 101 AIGAIAST------ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA---VLLG 151
             GAI            V        +++DS  K++IT P L ++    +LP+   VLL 
Sbjct: 120 KNGAIVGPLFEAFMEEAVRD------RLEDSEAKVLITTPALLERKPADDLPSLKHVLL- 172

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
             + V            + F+ L+E +    DI      + D A L Y+SG+TG  KGV+
Sbjct: 173 VGEDVEEGP------GTLDFNALMEQASDEFDIEW--TDREDGAILHYTSGSTGKPKGVL 224

Query: 212 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKF 270
             H   +      +    L    D V  C      V G S  I    L     V+  G+F
Sbjct: 225 HVHNAMLQH--YQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF 282

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
             E   R +E Y+VTVW+  P  I  L  A + LV+K+D+SSL+ + S   PL  E++  
Sbjct: 283 SPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRW 342

Query: 329 CQKNIPGATIFQGYGMTETCAPISLEN-PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 387
             K + G  I   + MTET   I + N P + + + GS G  + G+EA IV  D    LP
Sbjct: 343 GMK-VFGLPIHDNWWMTETGG-IMIANYPAMDI-KPGSMGKPLPGIEAAIVD-DQGNELP 398

Query: 388 PNQLGEIWVR 397
           PN++G + ++
Sbjct: 399 PNRMGNLAIK 408

Length = 570

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  118 bits (299), Expect = 5e-29
 Identities = 97/396 (24%), Positives = 155/396 (39%), Gaps = 84/396 (21%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           +S+ + +   + +    R LG+   D + IFA N   + I      +             
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQS----------- 54

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
                          ++ VP L+D    L   A+     ++   S +   + K+ SF +L
Sbjct: 55  ---------------LVIVP-LYDT---LGEEAIEY-ILNETEISIVFCDAVKVYSFEEL 94

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGE 233
            EL G    +P    K  D A ++Y+SGTTG  KGV+LTH N +A    +     E +G 
Sbjct: 95  EEL-GKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGP 153

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D V +  LP+ H+F   V     L  G   +     D       I++ + TV+  VP +
Sbjct: 154 TD-VYISYLPLAHIFERVVENVC-LYIG-GRIGYYSGDTRGLKGDIKELKPTVFVGVPRV 210

Query: 294 -------ILA-LAKNSLVRK--FDISS--------------------------------- 310
                  ILA +     +++  F+ +                                  
Sbjct: 211 LDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGR 270

Query: 311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV 370
           ++L+ SG APL  +  E   +   G  + QGYG+TETCA  +L +P  G   +G  G  +
Sbjct: 271 VRLMLSGGAPLSPDTQEFL-RVALGCPVLQGYGLTETCAGGTLSDP--GDTTTGHVGPPL 327

Query: 371 AGVEAQIVSVDTL--KPLPPNQLGEIWVRGPNVTPG 404
              E ++V V  +          GEI +RGPNV  G
Sbjct: 328 PCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKG 363

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  116 bits (293), Expect = 2e-28
 Identities = 102/386 (26%), Positives = 156/386 (40%), Gaps = 32/386 (8%)

Query: 32  FLFRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            L    AS   K A+             ++ +  ++V +V+     LG+ + DVV    P
Sbjct: 29  DLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLP 88

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDK------VK 141
           N   F + +L    IGA+ +   P++   ELS  +K +  K+++ VP+ +         +
Sbjct: 89  NWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLV-VPKTFRGFDHAAMAR 147

Query: 142 DLN--LPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
            L   LPA    V++G     S   L+   +          L+      PD      D  
Sbjct: 148 RLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPG-PD------DVT 200

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            L+Y+SGTTG  KGV+ T    +A  +  +    L    D V+L   PM H  G    L 
Sbjct: 201 QLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA--DDVILMASPMAHQTGFMYGLM 258

Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             +  G   V    +D   A   I    VT      P +  L +        +SSL+   
Sbjct: 259 MPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFL 318

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP--ISLENPLVGVRRSGSAGTLVAGV 373
              AP+   L+E  +    GA I   +GMTE  A     L++P    R S + G  + GV
Sbjct: 319 CAGAPIPGALVERARA-ALGAKIVSAWGMTENGAVTLTKLDDPD--ERASTTDGCPLPGV 375

Query: 374 EAQIVSVDTLKPLPPNQLGEIWVRGP 399
           E ++V  D   PLP  Q+G + VRG 
Sbjct: 376 EVRVVDAD-GAPLPAGQIGRLQVRGC 400

Length = 547

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (284), Expect = 2e-27
 Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 11/208 (5%)

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251
            D AA+LY+SGTTG  KGV+LTH   + A+ + +    L    D V+L  LP+FH+   +
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGL--RPDDVLLTPLPLFHINAQA 138

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISS 310
             +Y  L  G  +V + +F        + K+  TV+ ++  +   L K        D   
Sbjct: 139 YSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD-HP 197

Query: 311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV 370
           L+ V    APL   +    ++   G  + +GYGMTET  PI            GS G   
Sbjct: 198 LRFVFG--APLPAAIWPAFEERF-GVKLVEGYGMTETGVPI---IAPGDPAPPGSCGRPR 251

Query: 371 AGVEAQIVSVDTLKPLPPNQLGEIWVRG 398
            GVE +IV  D  + +PP ++GE+ VR 
Sbjct: 252 PGVEVRIVDEDG-REVPPGEVGELVVRP 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  114 bits (286), Expect = 2e-27
 Identities = 95/381 (24%), Positives = 168/381 (44%), Gaps = 20/381 (5%)

Query: 35  RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94
           + + +   K+A++D +   S ++S       ++++     GI   D V    P    F I
Sbjct: 31  QTARAMPDKIAVVD-NHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTI 89

Query: 95  CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKD 154
            +L  + +GA++    P +  +EL   +     K+    P L+ + + ++L   +L  ++
Sbjct: 90  IYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPVDL---ILPLQN 145

Query: 155 KVSSSGLISRSSKIVSFHDLIELSGSVTDIP----DVSVKQTDAAALLYSSGTTGVSKGV 210
           ++     I    K+      + LS  + D       ++    + AA+L++SGT G+ KGV
Sbjct: 146 QLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGV 205

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
           +LTH N +A+     A   L      V +   P+ H  G    +      G   V +  F
Sbjct: 206 MLTHNNILASERAYCARLNLTW--QDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIF 263

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
             +  L  +E+ R T      P I  L      +  D+S+L+    G   + K++  +CQ
Sbjct: 264 TPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQ 323

Query: 331 KNIPGATIFQGYGMTETC--APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 388
           +   G  +   YG TE+   A ++L++PL   R   + G   AGVE ++V  +  K LPP
Sbjct: 324 QR--GIKLLSVYGSTESSPHAVVNLDDPL--SRFMHTDGYAAAGVEIKVVD-EARKTLPP 378

Query: 389 NQLGEIWVRGPNVTPGIVYIN 409
              GE   RGPNV  G  Y++
Sbjct: 379 GCEGEEASRGPNVFMG--YLD 397

Length = 547

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  110 bits (277), Expect = 3e-26
 Identities = 97/373 (26%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L R +  Y  +  L+        ++++        +H+    G+ + D V +   N I F
Sbjct: 27  LARQAERYPDRPLLVFGG--TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEF 84

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-----DLNLPA 147
              FLG   +GAIA   N      +L   +++S  +L++    L   ++     DL LPA
Sbjct: 85  LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPA 144

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
           V L   D  +S  + +             L       P  +V+  D AA+LY+SGTTG S
Sbjct: 145 VWL--LDAPASVSVPAG-------WSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           KGV   H  F       SA    +G  D V+   LP+FH   L+   +  L  G   V  
Sbjct: 196 KGVCCPHAQFYWWGRN-SAEDLEIGA-DDVLYTTLPLFHTNALNA-FFQALLAGATYVLE 252

Query: 268 GKFDIEMALRAIEKYRVTVWWVV---PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
            +F       A+ ++  TV +++     I+L+       R   +  + L     A L   
Sbjct: 253 PRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRV-RVALGPGVPAALHAA 311

Query: 325 LMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 384
             E       G  +  GYG TET   I++ +     +R GS G L  G EA++V     +
Sbjct: 312 FRERF-----GVDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDEHD-Q 362

Query: 385 PLPPNQLGEIWVR 397
            LP  + GE+ +R
Sbjct: 363 ELPDGEPGELLLR 375

Length = 542

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  109 bits (274), Expect = 5e-26
 Identities = 88/386 (22%), Positives = 144/386 (37%), Gaps = 87/386 (22%)

Query: 38  ASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97
           A +  + AL+     ++L++++ K    +++     LG    D V ++   S       L
Sbjct: 2   AKHPDRPALVVGG--DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59

Query: 98  GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
             +  GA        Y                   VP       D + PA          
Sbjct: 60  ACLKAGA-------AY-------------------VP------LDPSQPA---------- 77

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
                 R +KI+   +    +  V D         D A +L++SG+TG  KGV ++H N 
Sbjct: 78  -----ERIAKIL---EAAGPAALVAD-------PDDLAYILFTSGSTGKPKGVQISHANL 122

Query: 218 IA-ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMA 275
            +    M+      + E D V     P F  F LSV  L+  L  G  +  + K  I   
Sbjct: 123 ASFLDWMVEDFD--LTEGD-VFSNQAP-FS-FDLSVFDLFPALASGATLYVIPKEQIADP 177

Query: 276 L---RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332
           L     ++++ +TVW  VP     L  +  +    + SL+        L K+L +  ++ 
Sbjct: 178 LALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRR 237

Query: 333 IPGATIFQGYGMTETC---------APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 383
            P A I   YG TE                 N  + +      G    G+ A I+  D  
Sbjct: 238 FPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI------GYPKPGLRALILDED-G 290

Query: 384 KPLPPNQLGEIWVRGPNVTPGIVYIN 409
           +P+PP + GE+ + GP V+PG  Y+N
Sbjct: 291 RPVPPGEEGELVIAGPQVSPG--YLN 314

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  109 bits (273), Expect = 9e-26
 Identities = 87/376 (23%), Positives = 157/376 (41%), Gaps = 35/376 (9%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D   SF +      + +     LG+   D V +   N   F       + +GA A   N 
Sbjct: 9   DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKI 168
            +   E++  ++DS  +++I   +L   +       +  + + +  +++++  IS +   
Sbjct: 69  HFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLT 128

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDA-AALLYSSGTTGVSKGVILTHKNFIAASLMISAH 227
                 I+  G +               +++Y+SGTTG  KGV    +   A +   +A 
Sbjct: 129 PPAGA-IDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGV----RRA-APTPEQAAA 182

Query: 228 QELVGELDH------VVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
            E +  L +        L   P++H     +GL        + G  +V   +FD E  L+
Sbjct: 183 AEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAG-----RLGGVLVLQPRFDPEELLQ 237

Query: 278 AIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP- 334
            IE++R+T   +VP + + L K    +  K+D+SSL+ V   AAP   ++    +  I  
Sbjct: 238 LIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVK---RAMIEW 294

Query: 335 -GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGE 393
            G  I++ YG TE+ A ++       +   G+ G    G E + V  D  +PLP  ++GE
Sbjct: 295 WGPVIYEYYGSTESGA-VTFATSEDALSHPGTVGKAAPGAELRFVDEDG-RPLPQGEIGE 352

Query: 394 IWVRGPNVTPGIVYIN 409
           I+ R     P   Y N
Sbjct: 353 IYSRIA-GNPDFTYHN 367

Length = 509

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  107 bits (270), Expect = 2e-25
 Identities = 100/390 (25%), Positives = 152/390 (38%), Gaps = 53/390 (13%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L  ++A Y  ++A+ID +    LS+++      +++   R LGI   D VL+  PN   F
Sbjct: 34  LTDHAARYPDRIAVIDGE--RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEF 91

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT--VPELWDK--------VKD 142
            I F  ++ +G     A P +  SEL          L+I       +D          K 
Sbjct: 92  YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKH 151

Query: 143 LNLPAVLL-GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
             L  V++ G  +  S           V    L   +G  T  P     +   A    S 
Sbjct: 152 PTLRHVIVAGEAEHPS-----------VLEAALCHPAGLFTPAPPADAGEV--AFFQLSG 198

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSVI-LYDQL 258
           GTTG  K +  TH ++  +   + A  E+ G  D   V LC LP  H F LS        
Sbjct: 199 GTTGTPKLIPRTHNDYYYS---VRASAEICG-FDQQTVYLCALPAAHNFPLSSPGALGVF 254

Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV       E+    IE++ VTV  +VPP+     + +   + D+SSL+L+  G 
Sbjct: 255 LAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGG 314

Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV----- 373
           A L   L       + G  + Q +GM E          LV   R      ++        
Sbjct: 315 ARLSATLARRVPAVL-GCQLQQVFGMAEG---------LVNYTRLDDPPEIIIHTQGRPL 364

Query: 374 ----EAQIVSVDTLKPLPPNQLGEIWVRGP 399
               E ++V  D   P+ P ++GE+  RGP
Sbjct: 365 SPDDEVRVVDADG-NPVAPGEVGELLTRGP 393

Length = 542

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score =  106 bits (266), Expect = 9e-25
 Identities = 100/398 (25%), Positives = 156/398 (39%), Gaps = 75/398 (18%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI---GAIASTA 109
           + LSF++  +    ++H     GI +    ++    S+ F   F    A+   GA+    
Sbjct: 40  DELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEF---FALTFALFKAGAVPVLV 96

Query: 110 NPVYTVSELSKQVKDSNPKLVITVPE--------LWDKVKDLNLPAVLLGSKDKVSSSGL 161
           +P   +  L + + ++ P   I +P+         W K             +  V+  G 
Sbjct: 97  DPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGK----------PSVRRLVTVGG- 145

Query: 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS 221
             R     +    +   G+    P   +   D AA+L++SG+TG  KGV+ TH  F A  
Sbjct: 146 --RLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEA-- 201

Query: 222 LMISAHQEL----VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SM-----GKF 270
             I A +E      GE+D   L   P+F +FG ++        G   V   M        
Sbjct: 202 -QIEALREDYGIEPGEID---LPTFPLFALFGPAL--------GMTSVIPDMDPTRPATV 249

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           D      AIE+Y VT  +  P ++  L +        + SL+ V S  AP+   ++E  +
Sbjct: 250 DPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFR 309

Query: 331 KNIP-GATIFQGYGMTETCAPIS---LENPLVGVR---RSGSAGTLV----AGVEAQIVS 379
             +P  A I   YG TE   PIS       L   R    +G AG  V     GVE +I++
Sbjct: 310 AMLPPDAEILTPYGATE-ALPISSIESREILFATRAATDNG-AGICVGRPVDGVEVRIIA 367

Query: 380 VDT--------LKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           +             L   ++GEI V GP VT    Y N
Sbjct: 368 ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRS--YYN 403

Length = 552

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  105 bits (263), Expect = 1e-24
 Identities = 90/356 (25%), Positives = 149/356 (41%), Gaps = 65/356 (18%)

Query: 49  ADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108
             + E  +F Q K    +++++ R LG+ + D V ++ P S    I  L V  +GA++  
Sbjct: 1   DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVP 60

Query: 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
            + ++    +  +++DS  +++                                      
Sbjct: 61  LSVLFGPDAVEHRLRDSGARVL-------------------------------------- 82

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
                       VTD  D      D A L+Y+SGTTG  KG +  H+  +     +  + 
Sbjct: 83  ------------VTDGSD------DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTV 286
           EL      V         + GL  +L   L  G  VV+  M +FD E A   + +Y VT 
Sbjct: 125 ELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN 184

Query: 287 WWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM 344
            + +PP  L +     S   ++D+  L+ V SG   LG+EL+E  +  + G T+ + YG 
Sbjct: 185 AF-LPPTALKMMRRVGSERARYDL-RLRAVASGGESLGEELLEWARDEL-GLTVNEFYGQ 241

Query: 345 TETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN 400
           TE    +      +G  R GS G  V G E  +V  D  +P+PP ++GEI V+ P+
Sbjct: 242 TEANLVVG-NCAALGPARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPD 295

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  105 bits (264), Expect = 2e-24
 Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 39/391 (9%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           HFL + +  +  ++AL+  D   S ++ +  + V  ++ +    G+ K D +L+ + N  
Sbjct: 11  HFLRQAARRFPDRIALVWGD--RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCN 68

Query: 91  H-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI---TVPELWDKVKDLNLP 146
             F   F     +GA+    N   T  E++   + S  + +I     PE        +  
Sbjct: 69  QMFESMF-AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE--------HAA 119

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
           AV   S D ++    I  +   + +  L+        + + +V   D     ++SGTTG 
Sbjct: 120 AVRAASPD-LTHVVAIGGARAGLDYEALVA-RHLGARVANAAVDHDDPCWFFFTSGTTGR 177

Query: 207 SKGVILTHKNFIAASLMISAH-QELVGELDH--VVLCVLPMFHVFGLSVILYDQLQKGNC 263
            K  +LTH      + +I+ H  +L+         L V P+ H  G+  +   Q+ +G  
Sbjct: 178 PKAAVLTHGQM---AFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC--QVARGAA 232

Query: 264 VVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            V +   +FD       +E++RVT  + VP I+  L ++  V ++D SSL+ V    AP+
Sbjct: 233 TVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPM 292

Query: 322 GKELMEDCQKNIP--GATIFQGYGMTE-----TCAPISLENPLVGVR-RSGSAGTLVAGV 373
                 D ++ +   G  + Q +G+ E     T  P +L +   G   R G+ G    G+
Sbjct: 293 ---YRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGM 349

Query: 374 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           E QI   D  + LPP + GEI V GP V  G
Sbjct: 350 EVQIQD-DEGRELPPGETGEICVIGPAVFAG 379

Length = 528

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  105 bits (263), Expect = 2e-24
 Identities = 94/397 (23%), Positives = 155/397 (39%), Gaps = 71/397 (17%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           ALID   D  LS ++ +++V +++      G+ + D V ++ PN I + + FL    +GA
Sbjct: 28  ALID--EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDK--------- 155
                N  Y   E++  +     + ++    +W   K ++  A+L               
Sbjct: 86  TVIAVNTRYRSHEVAHILGRGRARWLV----VWPGFKGIDFAAILAAVPPDALPPLRAIA 141

Query: 156 -VSSSG------LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVS 207
            V  +             ++ +  D    + +     D      DA ALL+ +SGTT   
Sbjct: 142 VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADP-----DAGALLFTTSGTTSGP 196

Query: 208 KGV------ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           K V      +L H   IA +               V+L  LP   VFG S +L   L  G
Sbjct: 197 KLVLHRQATLLRHARAIARAYGYDP--------GAVLLAALPFCGVFGFSTLL-GALAGG 247

Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--------DISSLKL 313
             +V    FD     RA+ ++RVT              + ++R+         D  S +L
Sbjct: 248 APLVCEPVFDAARTARALRRHRVT---------HTFGNDEMLRRILDTAGERADFPSARL 298

Query: 314 VGSGA-APLGKELMED-CQKNIPGATIFQGYGMTETCAPISLE--NPLVGVRRSGSAGTL 369
            G  + AP   EL      + +P   +   YG +E  A ++L+     V VR  G  G  
Sbjct: 299 FGFASFAPALGELAALARARGVPLTGL---YGSSEVQALVALQPATDPVSVRIEG--GGR 353

Query: 370 VAGVEAQIVSVDTLKP--LPPNQLGEIWVRGPNVTPG 404
            A  EA++ + D      LP  + GEI +R P++  G
Sbjct: 354 PASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRG 390

Length = 540

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  104 bits (260), Expect = 5e-24
 Identities = 102/379 (26%), Positives = 155/379 (40%), Gaps = 54/379 (14%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K A+I A + E +++ +      +++H FR LG+ + D V IF  N++ +          
Sbjct: 13  KPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERS 72

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVIT-------VPELWDKVKDLNLPAVLLGSKDK 155
           G   +  N   T +E +  V DS  + +IT          L  +   +    VL G  + 
Sbjct: 73  GLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE- 131

Query: 156 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LT 213
                        V + + +      T I D    ++    +LYSSGTTG  KG+   L 
Sbjct: 132 ---------LEGFVGYAEAVA-GLPATPIAD----ESLGTDMLYSSGTTGRPKGIKRPLP 177

Query: 214 HKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDI 272
            +       + +  Q L G   D V L   P++H      ++    + G  V+ M  FD 
Sbjct: 178 EQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDA 236

Query: 273 EMALRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAPLG---KEL 325
           E  L  IE+Y VT   +VP +   +L L +   VR K+D+SSL++    AAP     KE 
Sbjct: 237 EQYLALIEEYGVTHTQLVPTMFSRMLKLPEE--VRDKYDLSSLEVAIHAAAPCPPQVKEQ 294

Query: 326 MEDCQKNIPGATIFQGYGMTE---TCAPIS---LENPLVGVRRSGSAGTLVAGVEAQIVS 379
           M D      G  I + Y  TE     A  S   L +P       G+ G  + G    I+ 
Sbjct: 295 MIDWW----GPIIHEYYAATEGLGFTACDSEEWLAHP-------GTVGRAMFGD-LHILD 342

Query: 380 VDTLKPLPPNQLGEIWVRG 398
            D    LPP + G IW  G
Sbjct: 343 -DDGAELPPGEPGTIWFEG 360

Length = 511

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  102 bits (256), Expect = 2e-23
 Identities = 92/381 (24%), Positives = 151/381 (39%), Gaps = 49/381 (12%)

Query: 40  YSSKLALI--DADSD-ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96
           Y  K ALI   +       S+ +    + + ++ F  LGI K D V +   N   F  C+
Sbjct: 20  YGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCW 79

Query: 97  LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV 156
            G+  IGAI    N      E +  +++S   L++T  +         +   +       
Sbjct: 80  FGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQF------YPMYRQIQQEDATP 133

Query: 157 SSSGLISRS-----SKIVSFHDLI-ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
                ++R        + SF  L  +   ++   P +S    D A +L++SGTT   KGV
Sbjct: 134 LRHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTD--DTAEILFTSGTTSRPKGV 191

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV-FGLSVILYDQLQKGNCVVSMGK 269
           ++TH N   A    SA Q  + + D V L V+P FH+    +  +      G   V + K
Sbjct: 192 VITHYNLRFAGYY-SAWQCALRD-DDVYLTVMPAFHIDCQCTAAM-AAFSAGATFVLLEK 248

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALA--------KNSLVRKF----DISSLKLVGSG 317
           +        + KYR T+   +P +I  L         +   +R+     ++S        
Sbjct: 249 YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSD------- 301

Query: 318 AAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQI 377
                +E     ++   G  +   YGMTET   I  + P    RR  S G      EA+I
Sbjct: 302 -----QEKDAFEERF--GVRLLTSYGMTETIVGIIGDRP-GDKRRWPSIGRPGFCYEAEI 353

Query: 378 VSVDTLKPLPPNQLGEIWVRG 398
                 +PLP  ++GEI ++G
Sbjct: 354 RDDHN-RPLPAGEIGEICIKG 373

Length = 517

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 82/357 (22%), Positives = 123/357 (34%), Gaps = 76/357 (21%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           +F++ K    + ++  + LG+ + D V +  P         LG I +GA+     P  T 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFI---PGTT- 57

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
                                             LG KD             I    +  
Sbjct: 58  ---------------------------------QLGPKD-------------IRYRLERA 71

Query: 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235
                VT          D A L ++SGTTG+ K V+ TH   +   +  +   +L    D
Sbjct: 72  GARAIVTS-------ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDL--RPD 122

Query: 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPI 293
            +   +       G    L+     G  V      +FD E  L  +E+Y VT +   P  
Sbjct: 123 DLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA 182

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 353
              L +  L   +D S L+ V S   PL  E+++  +    G  I  GYG TET      
Sbjct: 183 YRMLLQQDL-SSYDFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRDGYGQTETGL---- 236

Query: 354 ENPLVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI 405
              LV        + GS G    G    I+  +    LPP + G+I VR     PG+
Sbjct: 237 ---LVANFPGMEVKPGSMGRPAPGYRVAIIDDEG-NELPPGEEGDIAVRVKPRPPGL 289

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 98.5 bits (246), Expect = 4e-22
 Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 52/412 (12%)

Query: 40  YSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
              ++ALI       +  + ++++    V +++   R LG+ K D V+I+ P      I 
Sbjct: 55  RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114

Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWDKVKDL 143
            L    IGAI S     +   EL+ ++ D+ PKL++T          VP   L DK  +L
Sbjct: 115 MLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALEL 174

Query: 144 NL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYS 200
           +      VL+ ++ +V +     R    + + +L+  +  V     V V+ TD   +LY+
Sbjct: 175 SQHKPHKVLILNRGQVPAPLKPGRD---LDWAELMAKARPV---DCVPVESTDPLYILYT 228

Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
           SGTTG  KGV+     + A +L  S       +   V      +  V G S I+Y  L  
Sbjct: 229 SGTTGKPKGVVRDTGGY-AVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287

Query: 261 GN-CVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSL 311
           G   V+  GK     D     R IE+Y V   +  P  I A+ K       ++K+D+SSL
Sbjct: 288 GATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSL 347

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR----RSGSAG 367
           + +      L    +E   +   G  +   +  TET  PI+     VG+     + GS G
Sbjct: 348 RALFLAGERLDSPTLE-WIEKTLGVPVIDHWWQTETGWPIT--ANCVGLELLPIKPGSPG 404

Query: 368 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 419
             V G + Q++  +T + L P +LG I ++ P + PG          L LWG
Sbjct: 405 KPVPGYDVQVLD-ETGEELGPGELGNIVIKLP-LPPG--------CLLTLWG 446

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 97.3 bits (242), Expect = 1e-21
 Identities = 79/353 (22%), Positives = 144/353 (40%), Gaps = 18/353 (5%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S+ +    V +++     LG+ + DVV    PN   F   +L    IGA+ +   P++ 
Sbjct: 54  FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SGLISRSSKIVSFH 172
             ELS  +  ++ K+ + VP ++      +  A+    + K+ +    ++       SF 
Sbjct: 114 ERELSFMLNHADSKVFV-VPSVFRG---FDHAAMARELQSKLPALRQVVVIDGDGDDSFD 169

Query: 173 DLIELSGSVTDIPDVSVKQ------TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 226
            ++            ++         D   L+Y+SGTTG  KGV+ T  N + +++   A
Sbjct: 170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT-ANTLFSNIHPYA 228

Query: 227 HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
            +  +G  D V+L   PM H  G    L   L      V    ++   A   I +  VT 
Sbjct: 229 ERLELGGGD-VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTF 287

Query: 287 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 346
                P +  L +        + SL       AP+   L+E   + + GA I   +GMTE
Sbjct: 288 TMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTE 346

Query: 347 TCAPISLENPLVGVRRSG-SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 398
               +++  P   + ++  + G  + GVE +++  +    L   + G + VRG
Sbjct: 347 -NGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANG-AKLSQGETGRLLVRG 397

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 90/377 (23%), Positives = 152/377 (40%), Gaps = 89/377 (23%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT--VSELSKQVKDSNPKL 129
           + LG+   D + I + N   + I  L +   G ++    P+Y    +E  + V + +   
Sbjct: 24  QSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSV---PLYPTLTAETIRYVLEHSDAK 80

Query: 130 VITVPEL--WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS-------FHDLIE---- 176
            + V +L  WD +K   +P             GL +      S       + DL+     
Sbjct: 81  ALFVGKLDDWDAMKAG-VPE------------GLPTIILFPYSTLKDHYKWDDLLAATEP 127

Query: 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH 236
           L G     P+      D A ++Y+SGTTG  KGV+L+   F  A+        L      
Sbjct: 128 LQGRPLPEPE------DLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPN--D 179

Query: 237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVP- 291
            +L  LP+ H+    ++      +G  + S  +      ++     +++ R TV++ VP 
Sbjct: 180 RLLSYLPLAHIAERVIV------EGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPR 233

Query: 292 ------------------------PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
                                   PI+ +L K  +++   +   +L GSGAAP+   L+ 
Sbjct: 234 LWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALI- 292

Query: 328 DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 387
              + + G  I +GYGMTE  A  +L  P  G RR G+ G  + GVE +I          
Sbjct: 293 AWYRKL-GLPICEGYGMTENFAYSTLNYP--GDRRIGTVGKPIPGVELKI---------- 339

Query: 388 PNQLGEIWVRGPNVTPG 404
            ++ GEI +R P +  G
Sbjct: 340 -SEDGEILIRSPGLMSG 355

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 95.2 bits (237), Expect = 2e-21
 Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 59/349 (16%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S+ + K +  + ++    LG+ K + V    P S    +  LG + +GA+       + 
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
              +  +++    K++IT PEL+++                                   
Sbjct: 61  PEPIRDRLELGEAKVLITTPELYER----------------------------------- 85

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
                  TD P+      D A L ++SGTTG  KGV+  H+  +A     +A   L    
Sbjct: 86  -------TD-PE------DPALLHFTSGTTGKPKGVLHVHRAVVAHY--ATARYVLDLRP 129

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
           D V  C      V G S  +   L  G   VV  G+FD E     +E+ +VTVW+  P  
Sbjct: 130 DDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTA 189

Query: 294 ILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI 351
           +  L +    L  ++D+SSL+ + S   PL  E++   +K + G  I   +  TET A I
Sbjct: 190 LRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVL-GMPIHDTWWQTETGA-I 247

Query: 352 SLENPLVGVRRSGSAGTLVAGVEAQIVSVD---TLKPLPPNQLGEIWVR 397
            + N      + GS G  + G+EA ++  D         P Q+GE+ ++
Sbjct: 248 MIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALK 296

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 95.3 bits (237), Expect = 4e-21
 Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 18/374 (4%)

Query: 30  VHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
              L RN       K A ID  S  SLS+ + ++ V ++  + R LG+ +++ VL+   +
Sbjct: 7   EDLLDRNVVEGRGGKTAFIDDIS--SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLD 64

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            + FPI FLG I  G +    N + T  + +  ++DS  ++V    EL   +K       
Sbjct: 65  GVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKA------ 118

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL-LYSSGTTGVS 207
            LG    +     +           L EL  + ++    +  Q D  A  LYSSG+TG+ 
Sbjct: 119 ALGKSPHLEH--RVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMP 176

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           KGV+ TH N    +  + A   L    D VV     +F  +GL   L   +  G   V M
Sbjct: 177 KGVVHTHSNPYWTA-ELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM 235

Query: 268 GKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
           G+     A+   + +++ T+++ VP +  A+  +  +   D   L+L  S    L  E+ 
Sbjct: 236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVG 295

Query: 327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 386
           +  Q    G  I  G G TE    I L N L G  R G++G  V G   ++V  D  + +
Sbjct: 296 QRWQARF-GVDIVDGIGSTEM-LHIFLSN-LPGDVRYGTSGKPVPGYRLRLVG-DGGQDV 351

Query: 387 PPNQLGEIWVRGPN 400
              + GE+ + GP+
Sbjct: 352 AAGEPGELLISGPS 365

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 95.4 bits (238), Expect = 4e-21
 Identities = 93/377 (24%), Positives = 144/377 (38%), Gaps = 39/377 (10%)

Query: 36  NSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
            +     + ALID     +L++++       ++     LG+   D V + A N   F + 
Sbjct: 58  AARRAPDRAALID--ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLA 115

Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP--AVLLG 151
                 +GA     N  ++  +L++       K ++   E  D +  L  +L       G
Sbjct: 116 LYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG 175

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
           + D    SG     S   +  DLI   GS T       K      ++ +SGTTG  KG  
Sbjct: 176 NPDDDEPSG-----STDETLDDLIA--GSSTAPLPKPPKP--GGIVILTSGTTGTPKGAP 226

Query: 212 LTHKNFIAASLMISAHQELVGELDHV-------VLCVLPMFHVFGLSVILYDQLQKGNCV 264
                        S    L G L  V        L   PMFH  G + +    +  G+ V
Sbjct: 227 RPE---------PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTL-AMALGSTV 276

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPL 321
           V   +FD E  L  I K++ T   VVP +   IL L    L  K+D SSLK++    + L
Sbjct: 277 VLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-KYDTSSLKIIFVSGSAL 335

Query: 322 GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD 381
             EL     +   G  ++  YG TE  A  ++  P       G+ G    GV  +I+  +
Sbjct: 336 SPELATRALEAF-GPVLYNLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKILD-E 392

Query: 382 TLKPLPPNQLGEIWVRG 398
               +P   +G I+V  
Sbjct: 393 NGNEVPRGVVGRIFVGN 409

Length = 549

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 95.0 bits (237), Expect = 5e-21
 Identities = 106/454 (23%), Positives = 165/454 (36%), Gaps = 108/454 (23%)

Query: 18  PLVLPSDPSFSMVHFLFRNSASYSSK-LALIDAD-SDESLSFSQFKSIVIKVSHSFRHLG 75
           PL LP     ++   L R +     + +  IDAD S+E  S+++      ++    R LG
Sbjct: 1   PLPLPPGAPRTLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALG 60

Query: 76  ITKKD-VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL----- 129
           +   D V+L    N   F   F   +  G +        T  E +  V     KL     
Sbjct: 61  LKPGDSVILQLERNE-DFVTAFWACVLGGFVPVPVAVPPTYDEPNAAVA----KLRNIWE 115

Query: 130 ------VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
                 ++T   L   +  L   A                   + +    + EL  +  D
Sbjct: 116 LLGSPVILTDAALVAALAGLRTRA-----------------GLEALRVLAIEELRSAPPD 158

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--------LD 235
            P    +  D A LL +SG+TGV K V+LTH+N +A S           +        LD
Sbjct: 159 APLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLD 218

Query: 236 HVVLCVLPMFHVFGLSV-----------ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 284
           HV    + M H+  + +           IL D L+                L  I++YRV
Sbjct: 219 HVG--GIVMLHLRDVYLGCQQIHVPTDYILADPLR---------------WLDLIDRYRV 261

Query: 285 TVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGA----APLGKELMEDCQK-NIPG 335
           T+ W  P    AL  ++L     R +D+SSL+ + +      A   +  +E      +P 
Sbjct: 262 TITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPA 320

Query: 336 ATIFQGYGMTETCAPISLENPLV------GVRRSGSAGTL-------------------V 370
             I   +GM+ETC+ ++            GV      G L                   +
Sbjct: 321 DAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPI 380

Query: 371 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            GV  +IV  +    LP  ++G + VRGP VT G
Sbjct: 381 PGVAIRIVD-EDGALLPEGEVGRLQVRGPTVTSG 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 95.0 bits (236), Expect = 7e-21
 Identities = 84/398 (21%), Positives = 153/398 (38%), Gaps = 34/398 (8%)

Query: 12  YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSF 71
            R +   L  P     ++       +A+    +AL+     + L++++  +   +++   
Sbjct: 212 EREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGG--QQLTYAELDARANRLARLL 269

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
             LG+   + V I A  S+   +  L V+  GA     +P+Y    L+  ++DS P L++
Sbjct: 270 ISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLL 329

Query: 132 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ 191
           T   L   V D+ LP + L                      D        TD    ++  
Sbjct: 330 TQAHLR--VDDVGLPGLAL----------------------DDALSEIPDTDPIPQALLG 365

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF--HVFG 249
              A ++Y+SG+TG  KGV + H+  +A  L  +  +  +   D V+      F   VF 
Sbjct: 366 DALAYIIYTSGSTGQPKGVRIEHRA-LANLLNDAGARFGLDADDRVLALASLSFDASVFE 424

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSLVRKFD 307
           +   L +   +     ++ + D    L  +E   +TV  +VP ++  L LA  +      
Sbjct: 425 IFGALLEG-ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISP 483

Query: 308 ISSLKLVGSGAAPLGKELMEDCQKNIPGA-TIFQGYGMTETCAPISLENPLVGVRRSGSA 366
              L+ + SG   L   L++   +    A  +   YG TE             +      
Sbjct: 484 CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPI 543

Query: 367 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           G  VA  +  I+    L+PLP    GE+++ G  +  G
Sbjct: 544 GRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALG 580

Length = 642

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 89/368 (24%), Positives = 141/368 (38%), Gaps = 75/368 (20%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K A    +  +SL++ +   +  + ++  R LG++  D VL+  P+S      FL     
Sbjct: 1   KTAFYCGE--QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFL----- 53

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
             + + A  V             NP L  T  +L   + D     +              
Sbjct: 54  ACLKAGAVAVAL-----------NPLL--TPQDLEHILDDSGAALL-------------- 86

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                             VT+  D      D A  LY+SGTTG  KGV+  H++      
Sbjct: 87  ------------------VTE-AD------DIAYWLYTSGTTGKPKGVMHRHRD------ 115

Query: 223 MISAHQELVGEL-----DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMAL 276
            ++  +    EL        +     +F  +GL   L   L  G   V + G    E  L
Sbjct: 116 PLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVL 175

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
             + ++R TV + VP +  AL ++         S++L  S    L   L E       G 
Sbjct: 176 DLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCVSAGEALPAGLAERW-AEATGI 234

Query: 337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 396
            I  G G TE    I + N   G  R G+ G  V G EA++V  ++ + +P   +G++WV
Sbjct: 235 EILDGIGSTEV-LHIFISNR-PGAARPGTTGRPVPGYEARLVD-ESGREVPAGTVGDLWV 291

Query: 397 RGPNVTPG 404
           RGP++ PG
Sbjct: 292 RGPSLAPG 299

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 38/379 (10%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           AL+      ++S+     +V  ++      G+   D V +   ++  F +  L       
Sbjct: 34  ALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 164
           +    +P   ++E   + + +  ++V+      D   D   P         V+  G    
Sbjct: 94  VVVPLDPALPIAEQRVRSQAAGARVVLIDA---DGPHDRAEPTTRWWPL-TVNVGGDSGP 149

Query: 165 SSKIVSFHDLIELSGSVTDIPDVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAAS 221
           S   +S H    L  +    P  S  +    D A ++++ GTTG+ K V  TH N IA+S
Sbjct: 150 SGGTLSVH----LDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHAN-IASS 204

Query: 222 L--MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKFDIEMALR 277
           +  +I+ ++  +   D  V  V+P++H  GL   L   L  G  V+  + G+F       
Sbjct: 205 VRAIITGYR--LSPRDATV-AVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWD 261

Query: 278 AIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            I+    T +  VP I   +L  A      +   ++L+ + S +APL  E  +  Q    
Sbjct: 262 DIKAVGATWYTAVPTIHQILLERAATEPSGR-KPAALRFIRSCSAPLTAETAQALQTEF- 319

Query: 335 GATIFQGYGMTETCAPISL---------ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 385
            A +   +GMTE    ++          ENP+V     G +     G + +IV  D L P
Sbjct: 320 AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST----GAQIRIVGSDGL-P 374

Query: 386 LPPNQLGEIWVRGPNVTPG 404
           LP   +GE+W+RG  V  G
Sbjct: 375 LPAGAVGEVWLRGTTVVRG 393

Length = 534

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 90.3 bits (224), Expect = 2e-19
 Identities = 86/373 (23%), Positives = 161/373 (43%), Gaps = 49/373 (13%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           +LA +D       ++++  ++V +++   R  G    + + + A NS+           +
Sbjct: 11  RLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARV 70

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GAI    N   + SEL   ++D+ P+L                   LLG  D V++    
Sbjct: 71  GAIYVPLNWRLSASELDALLQDAEPRL-------------------LLGD-DAVAAGRTD 110

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                +      I  + ++      S+     + +L++SGT+G  KGV+L+ +N    + 
Sbjct: 111 -----VEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAH 165

Query: 223 MISAHQELVGELDH--VVLCVLPMFHVFGLSVILYDQL-QKGNCVVSMGKFDIEMALR-- 277
                  ++G +D     LC  PMFH+ GL   +   L   G+ +VS G F+ +  L   
Sbjct: 166 NFG----VLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG-FEPKRTLGRL 220

Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK----LVGSGAAPLGKELMEDCQKNI 333
                 +T ++ VP +  A         FD ++L+    L   GA    ++++      I
Sbjct: 221 GDPALGITHYFCVPQMAQAFRAQP---GFDAAALRHLTALFTGGAPHAAEDILGWLDDGI 277

Query: 334 PGATIFQGYGMTE--TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 391
           P   +  G+GM+E  T   +S++  ++   ++G+AG     V+ ++V  D     P    
Sbjct: 278 P---MVDGFGMSEAGTVFGMSVDCDVIR-AKAGAAGIPTPTVQTRVVD-DQGNDCPAGVP 332

Query: 392 GEIWVRGPNVTPG 404
           GE+ +RGPN++PG
Sbjct: 333 GELLLRGPNLSPG 345

Length = 488

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 89.8 bits (224), Expect = 2e-19
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A ++Y+SG+TG  KGV++ H+     +L+    +         VL        F  SV
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGL--VNLLAWLQERYGLTAGDRVLQFAS--FSFDASV 149

Query: 253 I-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
             ++  L  G  +V        D E     + ++R+TV  +VP ++ AL     +    +
Sbjct: 150 WEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLD--ALEPAAL 207

Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA-- 366
            SL+LV  G   L  EL+   ++  PGA +   YG TET   ++           GS   
Sbjct: 208 PSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPI 267

Query: 367 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           G  +A     ++  + L+P+P    GE+++ G  V  G  Y+N
Sbjct: 268 GRPIANTRVYVLD-EDLRPVPVGVPGELYIGGAGVARG--YLN 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 89.2 bits (222), Expect = 5e-19
 Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 45/332 (13%)

Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +AL+  D    L++++ +    +++H     G+   D V I+A N I +    LG     
Sbjct: 20  VALVCGD--RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77

Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLL------GSKDK 155
           A+    N  Y   EL   + DS+   ++   E   +V ++   LP +        GS + 
Sbjct: 78  AVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND 137

Query: 156 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           +            V + D +       D  + S    D   LLY+ GTTG+ KGV+   +
Sbjct: 138 LLPGA--------VDYEDALAAGSPERDFGERS---PDDLYLLYTGGTTGMPKGVMWRQE 186

Query: 216 NFIAASL---------MISAHQELVGELDH----VVLCVLPMFHVFGLSVILYDQLQKGN 262
           +     L          I   +EL                P+ H  G        L  G 
Sbjct: 187 DIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAA-LFSGQ 245

Query: 263 CVV--SMGKFDIEMALRAIEKYRVTVWWVV-----PPIILALAKNSLVRKFDISSLKLVG 315
            VV     +FD +   R IE+ +V V  +V      P++ AL        +D+SSL  + 
Sbjct: 246 TVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEAR---GPYDLSSLFAIA 302

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQGYGMTET 347
           SG A     + E   + +P   +    G +ET
Sbjct: 303 SGGALFSPSVKEALLELLPNVVLTDSIGSSET 334

Length = 533

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 88.7 bits (220), Expect = 6e-19
 Identities = 82/383 (21%), Positives = 136/383 (35%), Gaps = 39/383 (10%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y   +A+I  +     S+ +       ++     LGI + D  ++  PN   
Sbjct: 28  ILRDQAARYPDAIAIICGN--RQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAE 85

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F I F  ++ +G     A   +  SEL+       P L I    +       +       
Sbjct: 86  FYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYI----IDRAHSLFDYDDFARQ 141

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            + K+ +   I  + +       + L      +     K  + A    S G+TG  K + 
Sbjct: 142 LQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIP 201

Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++   S+  S     +  L      LC LP  H + LS      + Y     G CV
Sbjct: 202 RTHNDYYY-SVRRSVE---ICWLTQQTRYLCALPAAHNYPLSSPGALGVFY----AGGCV 253

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V             IE+++VTV  +VPP +    + +   + D+SSLKL+  G A     
Sbjct: 254 VLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSAA 313

Query: 325 LMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL- 383
                     G  + Q +GM E          LV   R      ++   + + +S D   
Sbjct: 314 AARRVPAVF-GCQLQQVFGMAEG---------LVNYTRLDDPAEIIFTTQGRPMSPDDEV 363

Query: 384 -------KPLPPNQLGEIWVRGP 399
                   P+ P + G +  RGP
Sbjct: 364 RVVDDHGNPVAPGETGMLLTRGP 386

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 88.1 bits (219), Expect = 9e-19
 Identities = 98/412 (23%), Positives = 159/412 (38%), Gaps = 109/412 (26%)

Query: 46  LIDADSDES-LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI----CFLG-V 99
            I+ D  E  +S+ Q  +  +KV  + + LGI   D V+    ++  F      C LG +
Sbjct: 6   FIEGDKKEKFISYEQLFTRALKVLGALQKLGIKPGDEVVFQIEDNEDFIYVFWACILGGI 65

Query: 100 IAIGAIASTANPV-YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS 158
           I +        P+ Y  ++  K       KL+     +W+    LN P  L+  +D + S
Sbjct: 66  IPV--------PLSYGNTDEHKL------KLL----RVWNI---LNNP-FLITDRDSLLS 103

Query: 159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI 218
                                    +PD      D A + +SSG+TG  KGVILTHKN +
Sbjct: 104 -------------------------LPD------DIAFIQFSSGSTGEPKGVILTHKNLL 132

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG--NCVVSMGKFDIE--- 273
                I    E+    + V L  +P+ H  GL          G    ++    F I    
Sbjct: 133 TNIEAIIEAAEI--TSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLF-IRRPL 189

Query: 274 MALRAIEKYRVTVWWVVPP-----IILALAKNSLVRKFDISSLKLVGSGAAP----LGKE 324
           + L    ++R T+  +  P      +L   K   +  +D+SS++L+ +GA P    L +E
Sbjct: 190 LWLDKASQHRATI--LSSPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEE 247

Query: 325 LMEDCQK-NIPGATIFQGYGMTETCAPISLENP-----LVGVRRSG-------------- 364
            +E      +    ++  YG+ E    +S   P      V + R+               
Sbjct: 248 FLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKN 307

Query: 365 -------SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
                    G+ + G E +IV  D  + LP   +G I ++G NVT G  Y N
Sbjct: 308 SDAISFVEVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSG--YYN 356

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 17/222 (7%)

Query: 193 DAAAL-LYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCVLPMFHVFGL 250
           DA AL +Y+SGTTG  KGV+L+ +  IAA L  ++   +     D V++  LP+FHV GL
Sbjct: 128 DAPALIVYTSGTTGPPKGVVLS-RRAIAADLDALAEAWQWTA--DDVLVHGLPLFHVHGL 184

Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDIS 309
            + +   L+ GN  V  G+   E   +A+ +   T+++ VP +   +A +    R     
Sbjct: 185 VLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADPEAARAL--R 241

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 369
             +L+ SG+A L   + +     + G    + YGMTET   I+L     G RR G  G  
Sbjct: 242 GARLLVSGSAALPVPVFDRLAA-LTGHRPVERYGMTETL--ITLSTRADGERRPGWVGLP 298

Query: 370 VAGVEAQIVSVDTLKPLP--PNQLGEIWVRGPNVTPGIVYIN 409
           +AGVE ++V  +   P+P     +GE+ VRGP +  G  Y+N
Sbjct: 299 LAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDG--YLN 337

Length = 471

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 86.9 bits (216), Expect = 3e-18
 Identities = 99/397 (24%), Positives = 169/397 (42%), Gaps = 43/397 (10%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+  +   K+A+I    +      +++ +    V + ++  + LG+ K D V I+ P   
Sbjct: 65  RHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP 124

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV-- 148
              I  L    IGAI S     ++   L+ ++ D+  KLVIT  E     K + L A+  
Sbjct: 125 EAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVD 184

Query: 149 --LLGSKDKVSSSGLISRS-SKI-------VSFHDLIELSGSVTDIPDVSVKQTDAAALL 198
             L      V    ++ R+ + +       V +HDL+    +        +   D   +L
Sbjct: 185 EALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLMA--KASAYCEPEPMDSEDPLFIL 242

Query: 199 YSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGEL--DHVVLCVLPMFHVFGLSVIL 254
           Y+SG+TG  KGV+ T         ++ A    + V ++    +  C   +  + G S I+
Sbjct: 243 YTSGSTGKPKGVLHT-----TGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV 297

Query: 255 YDQLQKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAK--NSLVRKFDI 308
           Y  L  G   V+  G        R    IEK++VT+++  P  I AL +  +  V+K D+
Sbjct: 298 YGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDL 357

Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPG--ATIFQGYGMTET-CAPISLENPLVGV--RRS 363
           SSL+L+GS   P+  E      K +      I   +  TET    I+   PL G    + 
Sbjct: 358 SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMIT---PLPGATPTKP 414

Query: 364 GSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWVRGP 399
           GSA     G+E  +V  +   P+  P + G + ++ P
Sbjct: 415 GSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQP 450

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA---ASLMISAHQELVGELDHVVLCVLPM 244
                D A +L++SGT  + KGV LTH N +A   A L   + +E     D V++  LP 
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKE-----DDVMMSFLPP 233

Query: 245 FHVFGLSVILYDQLQKGNCVV-SMGKFDIEMALRAIEKYRVTVWWVVP---PIILALAKN 300
           FH +G +      L  G  VV +      +  +  I++ +VT     P     IL  AK 
Sbjct: 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK 293

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
               +  + SL+ V  G       L ++  K  P   + QGYG TE C+P+   N +   
Sbjct: 294 Q---ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITINTVNSP 349

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           +     G  + G++  IVS +T  P+   + G +  RG ++  G
Sbjct: 350 KHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSG 393

Length = 539

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 83.8 bits (207), Expect = 2e-17
 Identities = 89/377 (23%), Positives = 161/377 (42%), Gaps = 25/377 (6%)

Query: 30  VHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V  + R +A+ +    AL+D      L++S+ ++ V  V+      G+  +  V + APN
Sbjct: 3   VFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPN 62

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+   I  L +  +GA+ +  NP    +E+++ +K       +   +         + A+
Sbjct: 63  SVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVD------AQVMDAI 116

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                   S   +++    +     L E   +   I D   +    A + Y+SGTTG+ K
Sbjct: 117 ----FQSGSGVRVLALGDLV----GLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPK 168

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
           G ++  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 169 GAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVE 228

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
           +FD   AL+ IE+ RVT  +  P  + ALA  +      + SL+ V    A +   ++E 
Sbjct: 229 EFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLER 288

Query: 329 CQKNIPGATIFQGYGMTETCAPISLENPLVGVR-RSGSAGTLVAGVEAQIVSV--DTLKP 385
             +++PG      YG TE    + + +P  G   R G         E +IV +     + 
Sbjct: 289 VNQHLPGE-KVNIYGTTEAMNSLYMRDPRTGTEMRPGFFS------EVRIVRIGGSPDEA 341

Query: 386 LPPNQLGEIWVRGPNVT 402
           LP  + GE+ V   + T
Sbjct: 342 LPNGEEGELVVAAADAT 358

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 84/354 (23%), Positives = 140/354 (39%), Gaps = 70/354 (19%)

Query: 52  DESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
           +E+ ++        +++H     LG+   + VL+ + N+     C+L V+  GAI  T  
Sbjct: 58  EETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTM 117

Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170
           P+    EL+  V                              K +++             
Sbjct: 118 PLLRAKELTTIV-----------------------------DKARIT------------- 135

Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL 230
            H L +   +  D         D A + ++SGTTG+ KG +  H++ +A       H   
Sbjct: 136 -HALCDKRLTAAD---------DVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQ 185

Query: 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 290
               D V +   P+   FGL  ++   L+ G   V + +    + L+AI+++R T+ +  
Sbjct: 186 PTP-DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTA 244

Query: 291 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE---- 346
           P    A+     V+ FDISSL+   S    L  ++ +D      G  I  G G TE    
Sbjct: 245 PTAYRAMLI--KVKAFDISSLRKCVSAGETLPAKVWQD-WYERTGLKIIDGIGATEMLHI 301

Query: 347 -TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
              A  + EN      + G+ G  V G EA+IV  D    +P  + G + VRGP
Sbjct: 302 FISA--NEEN-----AKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGP 347

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 83.0 bits (206), Expect = 4e-17
 Identities = 97/393 (24%), Positives = 159/393 (40%), Gaps = 43/393 (10%)

Query: 38  ASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93
           A   +K+A+I      D   ++++ +    V + ++  + LG+ K D V I+ P     P
Sbjct: 58  AGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELP 117

Query: 94  ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL---L 150
           I  L    IGAI S     ++   L+ ++ D+  KL+IT    +   K + L  ++   L
Sbjct: 118 IAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEAL 177

Query: 151 GSKDKVSSSGLISRSSKIVSF--------HDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
                V    ++ R+   V          HDL+    +        +   D   +LY+SG
Sbjct: 178 EKCPSVEKVIVVKRTGGEVPMVEGRDVWWHDLMA--KASPYCEPEPMDAEDPLFILYTSG 235

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDH----VVLCVLPMFHVFGLSVILYDQL 258
           +TG  KGV+ T         ++ A        D     V  C   +  + G S I+Y  L
Sbjct: 236 STGKPKGVVHTT-----GGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPL 290

Query: 259 QKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLK 312
             G   V+  G  D     R    +EKY+VT+++  P  I  L +  +   +K D+SSL+
Sbjct: 291 ANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLR 350

Query: 313 LVGSGAAPLGKELMEDCQKNIPG--ATIFQGYGMTET----CAPISLENPLVGVRRSGSA 366
           L+GS   P+  E      + I      I   +  TET      P+    PL    + GSA
Sbjct: 351 LLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGATPL----KPGSA 406

Query: 367 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
                GVE  IV  +    +     G + ++ P
Sbjct: 407 TRPFPGVEPAIVDEEG-NEVEGGVEGYLVIKRP 438

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.4 bits (204), Expect = 7e-17
 Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 53/301 (17%)

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
            AV++G     ++  L  +  ++++  DL+        I  V   + D A +  +SG+TG
Sbjct: 110 KAVVVGEPFLAAAPVLEEKGIRVLTVADLLA----ADPIDPVETGEDDLALMQLTSGSTG 165

Query: 206 VSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
             K V +TH N  A   ++ ++A  ++      V++  LP+FH  G+   L   +  G  
Sbjct: 166 SPKAVQITHGNLYANAEAMFVAAEFDVE---TDVMVSWLPLFHDMGMVGFLTVPMYFGAE 222

Query: 264 VVSMGKFD------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-----FDISSLK 312
           +V +   D      +   L  I KYR T+    P    AL    L R+     FD+SSL+
Sbjct: 223 LVKVTPMDFLRDPLLWAEL--ISKYRGTMT-AAPNFAYALLARRLRRQAKPGAFDLSSLR 279

Query: 313 LVGSGAAPLGKELMEDCQK-----NIPGATIFQGYGMTETCAPIS---LENPLV------ 358
              +GA P+    +ED         +    I   YGM E    +S       LV      
Sbjct: 280 FALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDA 339

Query: 359 ---------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 403
                            RR  + G  + G+E ++V  D  + LPP  +G I +RG +VTP
Sbjct: 340 DLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDED-GQVLPPRGVGVIELRGESVTP 398

Query: 404 G 404
           G
Sbjct: 399 G 399

Length = 545

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 107/432 (24%), Positives = 167/432 (38%), Gaps = 64/432 (14%)

Query: 9   DG--IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI----DADSDESLSFSQFKS 62
           DG  + +S  P          S+ H L + +A    +  L            +++ + K 
Sbjct: 33  DGSIVIKSRHPL----GPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKR 88

Query: 63  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELS--- 119
            V  ++ +   LG+     V+I + NSI   +  L  +  G  A+  +P Y  S +S   
Sbjct: 89  AVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAY--SLMSHDH 146

Query: 120 ---KQVKDS-NPKLVITVP-ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
              K + D   P++V       + +     L A+ L     V  +G     + I +F DL
Sbjct: 147 AKLKHLFDLVKPRVVFAQSGAPFARA----LAALDLLDVTVVHVTGPGEGIASI-AFADL 201

Query: 175 IELSGSVTDIPDVSVKQT--DAAA-LLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQEL 230
              +   T     ++     D  A  L++SG+TG+ K VI T +   A  ++        
Sbjct: 202 --AATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPRE 259

Query: 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV-VSMGK---FDIEMALRAIEKYRVTV 286
                 V L  +P  H  G +      L  G  + +  GK      E  +R + +   TV
Sbjct: 260 PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTV 319

Query: 287 WWVVPPIILALAK-----NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT---- 337
           +  VP     LA+     ++L R F   +L+L+  G A L  +L E  Q      T    
Sbjct: 320 YGNVPAGYAMLAEAMEKDDALRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRI 378

Query: 338 -IFQGYGMTETCAPISLENPLVGV----RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 392
             + GYG TET AP +      G      R G  G  + GVE        LK  P     
Sbjct: 379 PFYTGYGATET-APTT-----TGTHWDTERVGLIGLPLPGVE--------LKLAPVGDKY 424

Query: 393 EIWVRGPNVTPG 404
           E+ V+GPNVTPG
Sbjct: 425 EVRVKGPNVTPG 436

Length = 624

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 81.5 bits (201), Expect = 2e-16
 Identities = 103/436 (23%), Positives = 172/436 (39%), Gaps = 50/436 (11%)

Query: 35  RNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+      +LAL+   S+     +L++ Q    V   + + R LG+ + D VLI+ P   
Sbjct: 60  RHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA 119

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWD 138
                 L    IGAI S     +    L+ ++ D+ PKL+++          +P   L D
Sbjct: 120 EAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLD 179

Query: 139 KVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
                     P VLL  +     + +     + V +  L         +P   ++  + +
Sbjct: 180 AAIAEAQHPPPHVLLVDR---GLAPMRLIPGRDVDYAAL-RTQHEDAQVPVEWLESNEPS 235

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            +LY+SGTTG  KGV      + A +L +S           V+     +  V G S I+Y
Sbjct: 236 YILYTSGTTGKPKGVQRDVGGY-AVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVY 294

Query: 256 DQLQKG-NCVVSMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKN--SLVRKFDIS 309
             L  G   V+  G     D  +    +E+Y V   +  P  I  L K   + +RK D+S
Sbjct: 295 APLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLS 354

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR--RSGSAG 367
           SL  +     PL  E       +  G  +   Y  TET  P+    P + ++  + GS G
Sbjct: 355 SLHWLFLAGEPL-DEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPG 413

Query: 368 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV-------------YINFF--- 411
             + G   +++   T +P  PN+ G + V  P + PG +             Y + F   
Sbjct: 414 LPMYGYHLRVLDEATGRPCGPNEKGVLTVVPP-LPPGCLSTVWGDDARFLKTYWSHFKRP 472

Query: 412 VFTLFLWGCEHTDSFI 427
           +++ F WG    D + 
Sbjct: 473 LYSSFDWGIRDEDGYT 488

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 35/227 (15%)

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASL------------MISAHQELVGELDHVVLCVLPM 244
           +LY+ GTTG+ KGV+   ++     L               A Q   G      L   P+
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67

Query: 245 FHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVV-----PPIILAL 297
            H  G  + L   L  G  VV +   KFD +   R +EK+RV    +V      P++ AL
Sbjct: 68  MHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126

Query: 298 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPL 357
                  ++D+SSL+ + S  A    E+ +   + +P   +    G +ET    S     
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGS----- 178

Query: 358 VGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGP 399
             V R+G A   G    G +  ++  D    +PP   ++G I   G 
Sbjct: 179 -SVSRAGGASATGKFELGPDTVVLDEDG-SEVPPGSGEVGWIARGGR 223

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 82/368 (22%), Positives = 135/368 (36%), Gaps = 77/368 (20%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           SL+F +      +++   R  GI K D V++  P           +  +GA+    +P  
Sbjct: 2   SLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGM 61

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
               L + ++++                    P   +G                      
Sbjct: 62  GRKHLGRCLEEAE-------------------PDAFIG---------------------- 80

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     IP       D AA+L++SG+TG  KGV+ TH+ F AA +        + E
Sbjct: 81  ----------IPKAD----DPAAILFTSGSTGPPKGVVYTHRTF-AAQIDALRSLYGIRE 125

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D   L   P F +FG ++ +   +   +   +    D     +AI +   +  +  P +
Sbjct: 126 GD-RDLAAFPPFALFGPALGVTTVIPAMD-PTAPAALDPAKLAQAIREIGASCVFGSPAL 183

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI-PGATIFQGYGMTETCAP-- 350
           +  +A+        + SL+ V S  AP+  +L+     N+ P A I   YG TE   P  
Sbjct: 184 LKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATE-ALPVA 242

Query: 351 -ISLENPLV--GVRRSGSAGTLV----AGVEAQIV--------SVDTLKPLPPNQLGEIW 395
            I     L          AG  V     G++ +I+        S D    LPP ++GEI 
Sbjct: 243 SIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEII 302

Query: 396 VRGPNVTP 403
           V GP+VT 
Sbjct: 303 VSGPHVTR 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 70/337 (20%), Positives = 129/337 (38%), Gaps = 56/337 (16%)

Query: 33  LFRNSASYSSKLALIDADSDES---LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           L R++ +     A+  A  D     +S+++ +S V +++ + R LG+   D V  + PN 
Sbjct: 64  LLRHADN--DPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNV 121

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV 140
               I  L   +IGAI S+ +P + V  +  +     PK++  V             +K+
Sbjct: 122 PEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKI 181

Query: 141 KDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
            ++     +L AV++     +SS    +                    +    +      
Sbjct: 182 AEIVKGLPSLEAVVV--VPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPL 239

Query: 196 ALLYSSGTTGVSK-------GVILTHKNFIAASLMISAHQELVGELDHVVL---CVLPMF 245
            +LYSSGTTG+ K       G +L H            H +L    D +         M+
Sbjct: 240 WILYSSGTTGLPKCIVHGAGGTLLQHLK------EHGLHCDL-RPGDRLFYYTTTGWMMW 292

Query: 246 H------VFGLSVILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALA 298
           +      + G +++LYD    G+       +     L R   K  +T++      + AL 
Sbjct: 293 NWLVSGLLSGATLVLYD----GS-----PLYPDPDVLWRLAAKLGITIFGTSAKYLDALE 343

Query: 299 KNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNI 333
           K  +   R  D+SSL+ + S  +PL  E  +    ++
Sbjct: 344 KAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 21/226 (9%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           ++    D A ++Y+SG+TG  KGV++TH+N    + + +    L       VL       
Sbjct: 94  LTSSPDDPAYVIYTSGSTGKPKGVVITHRNI--CNFLRAEGAILGIRPGDRVLQFAS--I 149

Query: 247 VFGLSV--ILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLV 303
            F +S+  I    L  G  +V   +      L   + + RVTV  + P    +L   +L+
Sbjct: 150 AFDVSILEIFT-TLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTP----SLL--ALL 202

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS 363
              D+ SL+ +  G     + L     +      +   YG TE    ++     +   + 
Sbjct: 203 DPEDVPSLRTLILGGEACPQAL---VDRWSKPRRLLNTYGPTEAT--VTATASRLTPGKP 257

Query: 364 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            + G  +      ++  D    +P   +GE+ + GP V  G  Y+N
Sbjct: 258 VNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARG--YLN 301

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 75/291 (25%), Positives = 121/291 (41%), Gaps = 69/291 (23%)

Query: 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 226
           +IV++  L+   G  +  P    K  D A + Y+SGTTG  KGV+LTH N IA     S 
Sbjct: 197 EIVTYSKLLAQ-GRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL 255

Query: 227 HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRV 284
             +     D V +  LP+ H++       +Q+   +  V++G +  D    +  +   R 
Sbjct: 256 STKF-YPSD-VHISYLPLAHIYERV----NQIVMLHYGVAVGFYQGDNLKLMDDLAALRP 309

Query: 285 TVWWVVP--------PIILALAKNSLVRK--FDIS------------------------- 309
           T++  VP         I  A+ ++  +++  F+ +                         
Sbjct: 310 TIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNK 369

Query: 310 -------SLKLVGSGAAPLGKELME---DCQKNIPGATIFQGYGMTETCAPISLENPLVG 359
                   ++ + SGA+PL  ++ME    C     G  + +GYGMTET   IS  +   G
Sbjct: 370 IKAKLGGRVRFMSSGASPLSPDVMEFLRICF----GGRVLEGYGMTETSCVISGMDE--G 423

Query: 360 VRRSGSAGTLVAGVEAQIVSVDTL------KPLPPNQLGEIWVRGPNVTPG 404
              SG  G+     E ++V V  +      +P P    GEI VRGP +  G
Sbjct: 424 DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPIIFKG 471

Length = 651

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 79.2 bits (196), Expect = 6e-16
 Identities = 67/257 (26%), Positives = 104/257 (40%), Gaps = 62/257 (24%)

Query: 171 FHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-- 227
           F  L E            V+     A + Y+SG+TG  KGV L+     AA+L   A   
Sbjct: 90  FATLGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLS-----AAALETVAQSL 144

Query: 228 QELVGELDHVV-LCVLPMFHVFGLSVIL------YDQLQKGNCVVSM----------GKF 270
            E +  L+    LC+LP      L+ +L      Y  L  G  V+ +             
Sbjct: 145 AEAIAILEPERHLCLLP------LATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGL 198

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
           D    + A+ +++     +VP +++AL  A        +  SL+ V  G A +   L++ 
Sbjct: 199 DPAQFVAALSRWQPHSLILVPQLLMALVAAVEQGPLPPE--SLRFVAVGGARVSPSLLQR 256

Query: 329 CQK-NIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 387
            +   +P   +++GYG++E  + +SL  P  G  R GS G                KPLP
Sbjct: 257 ARALGLP---VYEGYGLSECASVVSLNTP--GADRPGSVG----------------KPLP 295

Query: 388 PNQL-----GEIWVRGP 399
             Q+     GEI VRG 
Sbjct: 296 HVQVSIANDGEILVRGS 312

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 78.7 bits (195), Expect = 8e-16
 Identities = 84/396 (21%), Positives = 146/396 (36%), Gaps = 88/396 (22%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +AL+    D SL++++      +++   R  G+   DVV +    S    +  L ++  
Sbjct: 3   AIALVY--GDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P Y    L+  ++DS  ++++T         D +L  +    +  +      
Sbjct: 61  GAAYVPLDPAYPAERLAFMLEDSGARVLLT---------DESLAPLARADQLPLVILEEE 111

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK------- 215
                                 P  +V   D A ++Y+SG+TG  KGV + H+       
Sbjct: 112 LD--------------AEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVR 157

Query: 216 --NFIAASLMISAHQELVGELDHVVLCVLPM------FHVFGLSVILYDQLQKGNCVVSM 267
             N+IA    +              L + P+      F ++G        L  G  +V +
Sbjct: 158 NTNYIA----LDPDD--------RFLQLSPLSFDASTFEIWG-------ALLNGGRLVLI 198

Query: 268 GK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLK--LVGSGA-- 318
            K    D +   R I +  VTV W+   +      N LV +    ++ L+  LVG     
Sbjct: 199 DKETLLDPDRLARLIAEQGVTVLWLTAALF-----NQLVDEDPEALAGLRQLLVGGDVLS 253

Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGV 373
               + ++  C    PG  +  GYG TE     TC  I     L     S   G  +   
Sbjct: 254 PAHVRRVLAAC----PGLRLINGYGPTENTTFSTCHVI---TRLDEAADSIPIGRPIPNT 306

Query: 374 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
              I+  +  +P+P    GE++V G  +  G  Y+N
Sbjct: 307 TVYILD-EEGQPVPIGVPGELYVGGDGLALG--YLN 339

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 79.0 bits (195), Expect = 9e-16
 Identities = 99/370 (26%), Positives = 153/370 (41%), Gaps = 32/370 (8%)

Query: 43  KLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
           KLALI   D   ++  +F   K    K ++ F+ LGI K D V++       F    L +
Sbjct: 33  KLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLAL 92

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDLNLPAVLLGSKDKVS 157
             IGAIA  A  + T  ++  +++ +  K+++ + E  + + + +    A   GS   + 
Sbjct: 93  HKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDE---AAPECGSPTLLV 149

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
             G       I  F   IE +    + P  + +    D   + ++SGTTG+ K V   H 
Sbjct: 150 LVGDPVPEGWI-DFDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMV--EHD 206

Query: 216 NFIAASLMISA---HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKF 270
           +      +++A        G L   V        V+G    LY Q   G  V      KF
Sbjct: 207 HTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGK---LYGQWIAGAAVFVYDYDKF 263

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           D +  L  IEKY VT +   P I   L K  L  K+D+SSL+   +   PL  E+     
Sbjct: 264 DPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDL-SKYDLSSLRYCTTAGEPLNPEVFNTF- 321

Query: 331 KNIPGATIFQGYGMTETCAPI-SLEN--PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 387
           K   G  + +G+G TET   I +     P     + GS G    G +  I+  D  K   
Sbjct: 322 KEKTGIKLMEGFGQTETTLTIATFPWMEP-----KPGSMGKPSPGYDIDIIDPDG-KSCE 375

Query: 388 PNQLGEIWVR 397
             + GEI +R
Sbjct: 376 VGEEGEIVIR 385

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 31/228 (13%)

Query: 38  ASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97
           A +  + AL+    D+S+S+++  +   + +H     G+ K DVV +   N   +   +L
Sbjct: 48  ARHPDRPALLF--EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105

Query: 98  GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDLNLPAV---LLG 151
           G+  +GA+ +  N     + L+  +   + K +I   EL    ++ +          + G
Sbjct: 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAG 165

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELS-GSVTDIPDVSVKQT--DAAALLYSSGTTGVSK 208
                   G            DL   + G+ T  P      T  D A  +Y+SGTTG+ K
Sbjct: 166 GDTLDDPEGYE----------DLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPK 215

Query: 209 GVILTHKNFIAA----SLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
             +++H  ++ A      ++          D V+ C LP++H  G +V
Sbjct: 216 AAVMSHMRWLKAMGGFGGLLRLTP------DDVLYCCLPLYHNTGGTV 257

Length = 600

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 100/426 (23%), Positives = 166/426 (38%), Gaps = 89/426 (20%)

Query: 50  DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA--- 106
           D   +L++ Q+     + + +F  LG+ +   V I   NS  + I  +G I  G IA   
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63

Query: 107 -STANP-----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 160
            +T +P     V   SE +  V D N K +  +  + D++  L    +      K     
Sbjct: 64  YTTNSPEACQYVAETSEANILVVD-NAKQLQKILAIQDQLPHLKA-IIQYREPLKEKEPN 121

Query: 161 LISRSSKIVSFHDLIELSGSVTD-----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           L S       + + +EL  S+ D     I + S K      L+Y+SGTTG+ KGV+L+H 
Sbjct: 122 LYS-------WKEFMELGRSIPDEQLDAIIE-SQKPNQCCTLIYTSGTTGMPKGVMLSHD 173

Query: 216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFD 271
           N    +     H +L       V+  LP+ H+    + ++  +  G CV        K  
Sbjct: 174 NITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGT 233

Query: 272 IEMALRAIEKYRVTVWWVVP--------PIILALAKNSLVRK----------FDISSLKL 313
           +   LR   + R T +  VP         +    AK++ +++           + +   +
Sbjct: 234 LVKTLR---EVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLM 290

Query: 314 VGSGAAPLGKEL--------------MEDCQKNIPGAT----------------IFQGYG 343
            G    P+   L              ++ CQK   GA                 I + YG
Sbjct: 291 GGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYG 350

Query: 344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 403
           M+ET  P ++ NP     R  S G  + G E +I + D       + +GEI + G +V  
Sbjct: 351 MSETSGPHTVSNP--QNYRLLSCGKALPGCETKIHNPDA------DGIGEICIWGRHVFM 402

Query: 404 GIVYIN 409
           G  Y+N
Sbjct: 403 G--YLN 406

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 76.1 bits (188), Expect = 7e-15
 Identities = 75/385 (19%), Positives = 149/385 (38%), Gaps = 63/385 (16%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
             A+ID     +L++ +       ++ + R  G+   D+V +  P      +  LG++  
Sbjct: 3   ATAVID--GAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P       +  +  +  + V+T P L                          
Sbjct: 61  GAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPE---------------------- 98

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
              +  +        +      P   V   D A ++++SG+TG  KGV++TH+   A + 
Sbjct: 99  --EAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRA--AVNT 154

Query: 223 MISAHQEL-VGELDHVVLCV------LPMFHVFGL-----SVILYDQLQKGNCVVSMGKF 270
           ++  ++   VG  D  VL +      L ++ +FG      +++L D+ ++          
Sbjct: 155 ILDVNRRFGVGPAD-RVLALSALHFDLSVYDIFGALSAGAALVLPDEARRR--------- 204

Query: 271 DIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
           D +     ++++ VTVW  VP +   +L  A+++      + SL+LV      +  +L  
Sbjct: 205 DPDHWAELVQRHGVTVWNSVPALMDMLLTYAEDAARL---LPSLRLVMLSGDWIPLDLPR 261

Query: 328 DCQKNIPGATIFQGYGMTETCAPISLENPLVGV---RRSGSAGTLVAGVEAQIVSVDTLK 384
             +   PGA +    G TE  +  S+  P+  V    RS   G  +   +  ++  +  +
Sbjct: 262 RLRALAPGARLVSLGGATEA-SIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLD-EDGR 319

Query: 385 PLPPNQLGEIWVRGPNVTPGIVYIN 409
             P    GE+++ G  V  G  Y  
Sbjct: 320 DCPDWVPGELYIGGVGVALG--YWG 342

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 92/409 (22%), Positives = 154/409 (37%), Gaps = 56/409 (13%)

Query: 16   RPPLVLPSDPSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL 74
            R P   P  P    VH      +A     +A++    D+ LS+++  S   +++H  R  
Sbjct: 1994 RTPEAYPRGP---GVHQRIAEQAARAPEAIAVVF--GDQHLSYAELDSRANRLAHRLRAR 2048

Query: 75   GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
            G+  +  V I A  S    +  L V+  G      +P Y    L+  ++DS   L++T  
Sbjct: 2049 GVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQR 2108

Query: 135  ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194
             L +    L LPA            G+       +      E +      P V +   + 
Sbjct: 2109 HLLE---RLPLPA------------GVAR-----LPLDRDAEWADYPDTAPAVQLAGENL 2148

Query: 195  AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI- 253
            A ++Y+SG+TG+ KGV ++H   +A         EL    D    C L  F  F      
Sbjct: 2149 AYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYEL-SPAD----CEL-QFMSFSFDGAH 2202

Query: 254  --LYDQLQKGNCVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS 309
               +  L  G  V+      +D E     +E++ VT+    P  +  LA+++       +
Sbjct: 2203 EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPA 2262

Query: 310  SLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL-----ENPLVGVRRSG 364
                   G A +    +    + +    +F GYG TE      L     ++P       G
Sbjct: 2263 VRVYCFGGEA-VPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDP------CG 2315

Query: 365  SA----GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +A    G  +    A I+  D L  L P   GE+++ G  +  G  Y+N
Sbjct: 2316 AAYVPIGRALGNRRAYILDAD-LNLLAPGMAGELYLGGEGLARG--YLN 2361

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 87/386 (22%), Positives = 153/386 (39%), Gaps = 33/386 (8%)

Query: 25   PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            P+   VH L    A      +A++    +E L++++      +++H+    G+  + +V 
Sbjct: 4548 PATRCVHQLVAERARMTPDAVAVVF--DEEKLTYAELNRRANRLAHALIARGVGPEVLVG 4605

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            I    S    +  L V+  G      +P Y    L+  ++DS   L++T   L  +   L
Sbjct: 4606 IAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQR---L 4662

Query: 144  NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
             +P  L        +S  + R           +  G     P V +   + A ++Y+SG+
Sbjct: 4663 PIPDGL--------ASLALDRDE---------DWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705

Query: 204  TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
            TG  KGV ++H + +          EL  + D V+  +   F        LY  L  G  
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPD-DRVLQFMSFSFDGSHEG--LYHPLINGAS 4762

Query: 264  VV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            VV      +D E     I ++RVTV    P  +  LA+++  R  +  SL++   G   +
Sbjct: 4763 VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHA-ERDGEPPSLRVYCFGGEAV 4821

Query: 322  GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA---GTLVAGVEAQIV 378
             +   +   + +    +F GYG TET   + L     G     +    GT +      ++
Sbjct: 4822 AQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVL 4881

Query: 379  SVDTLKPLPPNQLGEIWVRGPNVTPG 404
                L PLP    GE+++ G  V  G
Sbjct: 4882 D-GQLNPLPVGVAGELYLGGEGVARG 4906

Length = 5163

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 73.8 bits (182), Expect = 4e-14
 Identities = 84/375 (22%), Positives = 143/375 (38%), Gaps = 86/375 (22%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           + ++S+    V +++     LG+ K D V I+ P      +  L +  IGAIA      +
Sbjct: 7   TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGF 66

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
               ++ +++D+  K++IT                         + G + R         
Sbjct: 67  GPDAVATRLQDAEAKVLIT-------------------------ADGFLRR--------- 92

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                G   D+ D      D A ++Y+SGTTG  KG + TH  F   +         +  
Sbjct: 93  -----GKRVDLKD------DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP 141

Query: 234 LDHVVLCVLPM-----------FHVFGLSVILYDQLQKGNCVVSMGKFDIEMA---LRAI 279
            D  +L +  M             + G +++LY+           G  D        R +
Sbjct: 142 GD-RLLWITDMGWMMGPWLVLGGLLLGATIVLYE-----------GAPDYPDPDRLWRIV 189

Query: 280 EKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKE----LMED-CQKN 332
           E+++VT   + P +I AL  +  + V   D+SSL+++GS   P   E    L E      
Sbjct: 190 ERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGR 249

Query: 333 IPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 392
            P   I    G TE    I    P+  ++     G    G++A +V  D  +P+   ++G
Sbjct: 250 AP---IINYSGGTEISGGILGNVPIRPIKPCSFNG-PSPGMDADVVDEDG-RPVRG-EVG 303

Query: 393 EIWVRGPNV--TPGI 405
           E+ VR P    T G 
Sbjct: 304 ELVVRAPWPGMTRGF 318

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 73.8 bits (181), Expect = 5e-14
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 28/299 (9%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           +   D SL++S+    V ++++  + +G+ K D V+I+ P  +  PI  L    IGA+ S
Sbjct: 114 EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHS 173

Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL------ 161
                ++   L++++ D  PK+VIT   +    K +NL  ++  + D+ + +G+      
Sbjct: 174 VVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICL 233

Query: 162 -------ISRSS------KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                  + R        + V + D++      T      V   D   LLY+SG+TG  K
Sbjct: 234 TYENQLAMKREDTKWQEGRDVWWQDVV--PNYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 291

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267
           GV+ T   ++  +     +       D V  C      + G S + Y  +  G  V+   
Sbjct: 292 GVLHTTGGYMVYTATTFKYAFDYKPTD-VYWCTADCGWITGHSYVTYGPMLNGATVLVFE 350

Query: 268 GKFDIEMALRA---IEKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPL 321
           G  +   + R    ++KY+VT+++  P ++ +L ++    V +    SL+++GS   P+
Sbjct: 351 GAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPI 409

Length = 666

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 70/322 (21%), Positives = 113/322 (35%), Gaps = 20/322 (6%)

Query: 27  FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
                   R                    ++++      ++    R LG+   D V    
Sbjct: 2   ERAAALFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLG 56

Query: 87  PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
            N       +  V  +GA+  TANP  +  E++  +  +  K+++  P L      L L 
Sbjct: 57  FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL------LPLV 110

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
             + G    V          K    +   E      +   V V +  A  + Y++GTTG+
Sbjct: 111 EAIRGELKTVQHFV--VMDEKAPEGYLAYE-EALGEEADPVRVPERAACGMAYTTGTTGL 167

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266
            KGV+ +H+  +  SL  S           VVL V+PMFHV    +     L     V+ 
Sbjct: 168 PKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 227

Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
             + D    +   +   VT    VP +   LA    S   +       +VG  AAP    
Sbjct: 228 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAP---R 284

Query: 325 LMEDCQKNIPGATIFQGYGMTE 346
            +    +   G  + QGYG+TE
Sbjct: 285 SLIARFE-RMGVEVRQGYGLTE 305

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 92/368 (25%), Positives = 157/368 (42%), Gaps = 36/368 (9%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           +++Q     +KVS +    GI   D V   A N+      + G++ IGAI  T NP    
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 116 SELSKQVKDSNPKLVIT----VPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSK 167
            +++  +  +  ++VIT    VP L +K+ D  LP+V    +L     +  + L      
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPIL-EKIAD-KLPSVERYVVLTDAAHMPQTTL----KN 154

Query: 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 227
            V++ + I    +  D    +  +  AA + Y+SGTTG  KGV+ +H++ +  +LM +  
Sbjct: 155 AVAYEEWIA--EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212

Query: 228 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 287
             L       +L V+P+FH     +           V+   K D       ++  +VT  
Sbjct: 213 DALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFT 272

Query: 288 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 347
             VP + L L +        +  LK+V  G + + + +++  +    G  +   +GMTE 
Sbjct: 273 AGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDM--GVEVRHAWGMTEM 330

Query: 348 CAPI----SLENPLVGVRRSGSA--------GTLVAGVEAQIVSVDTLKPLP--PNQLGE 393
            +P+    +L+ P   +   G A        G    GVE +I   D  K LP      G 
Sbjct: 331 -SPLGTLAALKPPFSKL--PGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGR 386

Query: 394 IWVRGPNV 401
           + VRGP V
Sbjct: 387 LKVRGPAV 394

Length = 542

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 88/384 (22%), Positives = 151/384 (39%), Gaps = 39/384 (10%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           VH L    A  +  + AL     ++ LS+++      +++H     G+    +V I    
Sbjct: 514 VHQLIEAQARQHPERPAL--VFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVER 571

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           SI   +  L V+  G      +P Y    L+  + DS  +L++T   L   +  L +PA 
Sbjct: 572 SIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL---LAQLPVPAG 628

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
           L                  +        L G     P+V++   + A ++Y+SG+TG  K
Sbjct: 629 L----------------RSLCLDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPK 672

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
           GV ++H   +A  + + A +  +   D +++     F +      L+  L  G  +  + 
Sbjct: 673 GVAISHGA-LANYVCVIAERLQLAADDSMLMVSTFAFDLGVT--ELFGALASGATLHLLP 729

Query: 269 K---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
                D E     +    VTV  +VP  + AL + S V         LV  G A L  +L
Sbjct: 730 PDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-PRPQRALVCGGEA-LQVDL 787

Query: 326 MEDCQKNIPGATIFQGYGMTETCA-----PISLENPLVGVRRSGSAGTLVAGVEAQIVSV 380
           +   +   PGA +   YG TET        +S E    G    G     +A +   I+  
Sbjct: 788 LARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQP---LANLGLYILDH 844

Query: 381 DTLKPLPPNQLGEIWVRGPNVTPG 404
             L P+P   +GE+++ G  +  G
Sbjct: 845 Y-LNPVPVGVVGELYIGGAGLARG 867

Length = 3956

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 105/418 (25%), Positives = 166/418 (39%), Gaps = 76/418 (18%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+ A    +LALI    + D + + +F Q    V +++   R LG+ + D VLI+ P   
Sbjct: 61  RHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA 120

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWD 138
                 L    IGAI S     +    L+ ++ D+ P L+++          VP   L D
Sbjct: 121 EAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD 180

Query: 139 KVKDL---NLPAVLLGSKDKVSSSGLIS---RSSKIVSFHDLIELSGSVTDIPDVSVKQT 192
           +   L       VLL  +      GL      + + V +  L         +P   ++  
Sbjct: 181 EAIALAQHKPRHVLLVDR------GLAPMARVAGRDVDYATLRAQHLG-ARVPVEWLESN 233

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF---- 248
           + + +LY+SGTTG  KGV                 Q   G   + V     M  +F    
Sbjct: 234 EPSYILYTSGTTGKPKGV-----------------QRDTG--GYAVALATSMDTIFGGKA 274

Query: 249 --------------GLSVILYDQLQKGNC-VVSMG---KFDIEMALRAIEKYRVTVWWVV 290
                         G S I+Y  L  G   ++  G   + D  +  R +EKY+V   +  
Sbjct: 275 GETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSA 334

Query: 291 PPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 348
           P  I  L K   +L+RK D+SSL+ +     PL +       + + G  +   Y  TET 
Sbjct: 335 PTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETG 393

Query: 349 APISLENPLVGVR--RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            PI      V  R  R GS G  + G   ++++  T +P  PN+ G + + GP + PG
Sbjct: 394 WPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGP-LPPG 450

Length = 629

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 88/374 (23%), Positives = 152/374 (40%), Gaps = 28/374 (7%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
                E  +F+   +    ++H+    LGIT    V     N          V  +GA+ 
Sbjct: 32  GGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVF 91

Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSG 160
           +  N      ++   +  +  ++++  P L +++ ++    P V     +G  D  S++ 
Sbjct: 92  NPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAA 151

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            +    K+ S+  L++   +V D P++   +T AAA+ YS+GTTG  KGV+ +H++    
Sbjct: 152 HMPEGIKVYSYEALLDGRSTVYDWPEL--DETTAAAICYSTGTTGAPKGVVYSHRSLYLQ 209

Query: 221 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIE 280
           SL +     L        LC +P++HV    V L   +     V            + I 
Sbjct: 210 SLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIA 269

Query: 281 KYRVTVWWVVPPIILAL----AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
                V   VP + + L     KN   R     SL+ +  G + +   L++  ++   G 
Sbjct: 270 TAMPRVAHGVPTLWIQLMVHYLKNPPERM----SLQEIYVGGSAVPPILIKAWEERY-GV 324

Query: 337 TIFQGYGMTETCAPISLENPLVGVRRSGSA--------GTLVAGVEAQIVSVDTLKPLPP 388
            +   +GMTET    ++  P  GV  SG A        G   A +E +IV+   +     
Sbjct: 325 DVVHVWGMTETSPVGTVARPPSGV--SGEARWAYRVSQGRFPASLEYRIVNDGQVMESTD 382

Query: 389 NQLGEIWVRGPNVT 402
              GEI VRG  VT
Sbjct: 383 RNEGEIQVRGNWVT 396

Length = 576

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 88/384 (22%), Positives = 146/384 (38%), Gaps = 86/384 (22%)

Query: 30  VHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           +H L    A  +   +A++  D  ESL++++      +++   R  G+  +  V +    
Sbjct: 1   LHELVEAQAERTPDAIAVVCGD--ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRR 58

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S    +  L V+  GA     +P Y    L+  ++D+  +LV+T         D +  A 
Sbjct: 59  SPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT---------DPDDLAY 109

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                                    +I  SGS                       TG  K
Sbjct: 110 -------------------------VIYTSGS-----------------------TGRPK 121

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSM 267
           GV + H+N  AA+L+  A      E    VL    +   F LSV  ++  L  G  VV  
Sbjct: 122 GVAIEHRN--AAALLQWAAAVFSAEELAGVLAATSI--CFDLSVFEIFVPLSTGGRVVLA 177

Query: 268 GKFDIEMALRAIE-KYRVTVWWVVPPIILALAK-NSLVRKFDISSLKLVGSGAAPLGKEL 325
              D  +AL  +  K  VT+   VP     L + ++L      SS++ V     PL +EL
Sbjct: 178 ---DNALALPDLPAKAEVTLINTVPSAARELLRHDALP-----SSVRTVNLAGEPLPQEL 229

Query: 326 MEDCQKNIPGATIFQGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV 380
           ++          ++  YG +E     T A +       G  R+ S G  +AG +A ++  
Sbjct: 230 VQRLYALPQVERVYNLYGPSEDTTYSTYAEVEP-----GASRTPSIGRPLAGTQAYVLD- 283

Query: 381 DTLKPLPPNQLGEIWVRGPNVTPG 404
             L+P+P    GE+++ G  V  G
Sbjct: 284 AHLQPVPVGVPGELYIGGAGVARG 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 16/242 (6%)

Query: 52  DESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
            E++++++      +V+ +   H G+   D V +   N   F   +LG+  +G   +  N
Sbjct: 1   GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60

Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK--- 167
                  L    +    ++++  PEL + V+++ LPA+    +        +S +S    
Sbjct: 61  TNIRSGSLLHCFRCCGARVLVADPELLEAVEEI-LPAL----RAMGVRVFYLSHTSPPEG 115

Query: 168 IVSFHDLI--ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
           ++S    +       V       V     A  +Y+SGTTG+ K   ++H   +  S M  
Sbjct: 116 VISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGM-- 173

Query: 226 AHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 284
               L G   D VV   LP++H  G  + +   +  G  +V   KF          KY V
Sbjct: 174 --LSLCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNV 231

Query: 285 TV 286
           TV
Sbjct: 232 TV 233

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 98/390 (25%), Positives = 157/390 (40%), Gaps = 60/390 (15%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L++ Q    V + S    +L I+K D VLI+  N++   I  L    IGA        Y+
Sbjct: 93  LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152

Query: 115 VSELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVS 170
           V  L  +++   PKL+IT     L D++     NL   +  S  K S+   + R+  I S
Sbjct: 153 VKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRND-ITS 211

Query: 171 FHDLIELSGSVTDIPD----------------------VSVKQTDAAALLYSSGTTGVSK 208
             DL ++  ++  IP+                      V V+ +    +LY+SGTTG SK
Sbjct: 212 ESDLKKI-ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSK 270

Query: 209 GVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
            V+ ++   +         +I      V      +  V   FH F     LY  L  GN 
Sbjct: 271 AVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVS--FHGF-----LYGSLSLGNT 323

Query: 264 VVSMGKFDI------EMAL-RAIEKYRVTVWWVVPPIILALAKNS-----LVRKFDISSL 311
            V M +  I      E  L   IEK++VT    +P  I  L K       +  K+D+S+L
Sbjct: 324 FV-MFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNL 382

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET--CAPISLENPLVGVRRSGSAGTL 369
           K +  G   + + + E  +  +      +GYG TE          +  +    +G     
Sbjct: 383 KEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIF 441

Query: 370 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
              ++  I+S D  K L  N++GE+  + P
Sbjct: 442 ---IKPSILSEDG-KELNVNEIGEVAFKLP 467

Length = 647

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 67.9 bits (167), Expect = 3e-12
 Identities = 86/383 (22%), Positives = 146/383 (38%), Gaps = 90/383 (23%)

Query: 33  LFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           L R+      + A+I    D     LS+++ +  V  ++ + R LG+   D V  + PN 
Sbjct: 92  LLRHRRD--DRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNI 149

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV 140
               +  L   ++GAI S+ +P + V  +  +     PK++I V              KV
Sbjct: 150 PETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKV 209

Query: 141 KDLN--LP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194
            +L   LP     V++     +  +   +     + + D +               + + 
Sbjct: 210 AELRAALPSLEHVVVV---PYLGPAAAAAALPGALLWEDFLA---------PAEAAELEF 257

Query: 195 AAL--------LYSSGTTGVSK-------GVILTHKNFIAASLMISAHQEL-----VGEL 234
             +        LYSSGTTG+ K       G++L H             +EL     +G  
Sbjct: 258 EPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEH------------LKELGLHCDLGPG 305

Query: 235 DHV---VLCVLPM--FHVFGL----SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
           D       C   M  + V GL    +++LYD    G    S    D  +      +  VT
Sbjct: 306 DRFFWYTTCGWMMWNWLVSGLLVGATLVLYD----G----SPFYPDPNVLWDLAAEEGVT 357

Query: 286 VWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKE----LMEDCQKNIPGATIF 339
           V+      + A  K  LV     D+S+L+ +GS  +PL  E    + E  + ++  A+I 
Sbjct: 358 VFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASIS 417

Query: 340 QGYGMTETCAPISLENPLVGVRR 362
            G   T+ C+     NPL+ V R
Sbjct: 418 GG---TDICSCFVGGNPLLPVYR 437

Length = 655

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 67.2 bits (165), Expect = 6e-12
 Identities = 75/236 (31%), Positives = 108/236 (45%), Gaps = 49/236 (20%)

Query: 195 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254
           A  L++SG+TG+ K VI TH+   A   M++     + E   V++  LP  H FG +  L
Sbjct: 212 AKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL 271

Query: 255 YDQLQKGNCVVSM---------GKFDIEM--ALRAIEKYRVTVWWVVPP----IILALAK 299
              L  G    ++         G FD E    LR I     TV++ VP     ++ AL +
Sbjct: 272 GIVLYNGG---TLYIDDGKPTPGGFD-ETLRNLREISP---TVYFNVPKGWEMLVPALER 324

Query: 300 N-SLVRKFDISSLKLVGSGAAPLGKEL--------MEDCQKNIPGATIFQGYGMTETCAP 350
           + +L R+F  S LKL+    A L +++           C + I   T   G GMTET AP
Sbjct: 325 DAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT---GLGMTET-AP 379

Query: 351 --ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
                  PL    R+G+ G    G E ++V V         +L E+ V+GPNVTPG
Sbjct: 380 SATFTTGPLS---RAGNIGLPAPGCEVKLVPVG-------GKL-EVRVKGPNVTPG 424

Length = 614

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 89/387 (22%), Positives = 146/387 (37%), Gaps = 70/387 (18%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY- 113
           +++++    V  ++ +   LG++ +  ++I + NSI   +  L  +  G   +  +P Y 
Sbjct: 26  VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85

Query: 114 TVSE----LSKQVKDSNPKLVIT--VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
            +S+    L        P  V           +  L L  V +     V+  G     + 
Sbjct: 86  LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPV-----VAVRGAPGGPA- 139

Query: 168 IVSFHDLIELSGSVTDIPDVS-----VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
            ++F  L+    +      V      V     A  L++SG+TG+ K VI TH+   A   
Sbjct: 140 -IAFAALLATPPT----AAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQA 194

Query: 223 MISAHQELVGELDH---VVLCVLPMFHVFGLSVILYDQLQKGNCVV------SMGKFDIE 273
           MI    +    L     V++  LP  H FG +      L  G  +         G F+  
Sbjct: 195 MI---AQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLFEET 251

Query: 274 MA-LRAIEKYRVTVWWVVPPIILALAK-----NSLVRKFDISSLKLVGSGAAPLGKELME 327
           +  LR +     TV++ VP     L        +L R+F    L+L+    A L +++ +
Sbjct: 252 LRNLREVSP---TVYFNVPKGFEMLVDALERDAALRRRF-FKRLRLLFYAGAALPQDVWD 307

Query: 328 DCQK--------NIPGATIFQGYGMTETCAPISL-ENPLVGVRRSGSAGTLVAGVEAQIV 378
             Q          IP  +   G G TET    +    P     RSG  G    G E ++V
Sbjct: 308 RLQALAVRTTGERIPMTS---GLGATETAPTATFVHWPTD---RSGVIGLPAPGTELKLV 361

Query: 379 SV-DTLKPLPPNQLGEIWVRGPNVTPG 404
                L         E+ V+GPNVTPG
Sbjct: 362 PNGGKL---------EVRVKGPNVTPG 379

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 67.1 bits (165), Expect = 6e-12
 Identities = 101/402 (25%), Positives = 172/402 (42%), Gaps = 69/402 (17%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+  +   K+A+I    D      +++ +    V + +++ + LG+ K D V I+ P   
Sbjct: 75  RHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIP 134

Query: 91  HFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
              +  L    IGA+ S    V    ++   L+ ++ D+  KLVIT  E     K + L 
Sbjct: 135 EAAVAMLACARIGAVHS----VVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLK 190

Query: 147 AVL---LGSKDKVSSSGLISRSSKIVS--------FHDLIELSGSVTDIPDVSVKQTDAA 195
           A +   L +   V    ++ R+   V         +H+L+   G+  +     +   D  
Sbjct: 191 ANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVA--GASDECEPEPMDAEDPL 248

Query: 196 ALLYSSGTTGVSKGVI------LTHKNFIAASLMISAHQELVGEL--DHVVLCVLPMFHV 247
            +LY+SG+TG  KGV+      L +    AA  M     + V +     V  C   +  V
Sbjct: 249 FILYTSGSTGKPKGVLHTTGGYLVY----AAMTM-----KYVFDYKDGDVYWCTADVGWV 299

Query: 248 FGLSVILYDQLQKGNCVV---------SMGKF-DIEMALRAIEKYRVTVWWVVPPIILAL 297
            G S I+Y  L  G   +           G+F ++      I+K++VT+++  P  I AL
Sbjct: 300 TGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV------IDKHKVTIFYTAPTAIRAL 353

Query: 298 AK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT--IFQGYGMTET-CAPIS 352
            K  +   +K+D+SSL+L+GS   P+  E  E   K + G    I   +  TET    I+
Sbjct: 354 MKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMIT 413

Query: 353 LENPLVGVR--RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 392
              PL G    + GSA   + G++  +V  +   PL   + G
Sbjct: 414 ---PLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGG 451

Length = 637

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 66.5 bits (163), Expect = 8e-12
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 62/235 (26%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D  LS+++F +   + +H+ R LG+ K DVV +   N   + + +L +  +GA+A+  N 
Sbjct: 1   DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                 L+  +  S+ + VI  P                                     
Sbjct: 61  TQRGEVLAHCINVSDARAVIVDPAF----------------------------------- 85

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
              I  SG                       TTG+ K  I++H+ ++ A  +       +
Sbjct: 86  --YIYTSG-----------------------TTGLPKAAIMSHRRWLRAGAVFGGL--GL 118

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
            + D V+   LP++H   L+V     L  G  +    KF        + +Y  T 
Sbjct: 119 LKPDDVLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATA 173

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 83/383 (21%), Positives = 136/383 (35%), Gaps = 75/383 (19%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           LS+++ +    +V++    LG+   D V    P +    +  L    +GAI     P++T
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYV---PLFT 57

Query: 115 ---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                 +  ++  S  K+V+T      K+ D                             
Sbjct: 58  AFGPKAIEYRLGHSGAKVVVTNAANRGKLDD----------------------------- 88

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                                D  A +Y+SGTTG+ KGV +   N +AA     A+    
Sbjct: 89  ---------------------DLFAQMYTSGTTGLPKGVPVPL-NALAA---FYAYMRYA 123

Query: 232 GEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW 287
            +L   D       P +  +GL   +   L  G   V + G F  E     +E+  VT +
Sbjct: 124 IDLRDDDVFWNIADPGW-AYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNF 182

Query: 288 WVVPPIILAL-AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 346
              P     L A  +         L++  S   PL  E++   Q N+ G TI   YG TE
Sbjct: 183 AGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANL-GVTIHDHYGQTE 241

Query: 347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 406
           T  P+   + L    R+GS G  + G    ++  D  +PL   + G++ +   +      
Sbjct: 242 TGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPL--- 297

Query: 407 YINFFVFTLFLWGCEHTDSFIRG 429
                 F+ +    E T   I G
Sbjct: 298 ----LWFSGYWDDPEKTAELIAG 316

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 84/274 (30%)

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV------LCVLP 243
           ++TD   ++Y+SGTTG  KGVILT++  IA  L       L+   D V          LP
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLST---DHLLKVTDRVATEEDSYFSYLP 274

Query: 244 MFHVFGLSVILYDQLQKGNCV---VSMG--KFDIEMALRAIEKYRVTVWWVVPP------ 292
           + HV       YDQ+ +  C+    S+G  + DI   +  ++  + T++  VP       
Sbjct: 275 LAHV-------YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIY 327

Query: 293 --IILALAKNSLVRK--FDIS-----------------------------------SLKL 313
             I+  ++   ++RK  FD +                                    ++L
Sbjct: 328 TGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRL 387

Query: 314 VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA----PISLENPLVGVRRSGSAGTL 369
           + SGAAPL + + E+  +    + + QGYG+TE+C      I+    +V     G+ G  
Sbjct: 388 LLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMV-----GTVGVP 441

Query: 370 VAGVEAQIVSV-----DTLKPLPPNQLGEIWVRG 398
           +  +EA++ SV     D L  +P    GEI +RG
Sbjct: 442 MTTIEARLESVPEMGYDALSDVPR---GEICLRG 472

Length = 660

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 20/248 (8%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           V  K  +  A+ ++SGTTG  K    +H +      +   +   +   D ++  +     
Sbjct: 169 VKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSD-IMWNMSDTGW 227

Query: 247 VFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 304
           +      L+    +G CV    + +FD ++ L+ + KY +T +   P +   L +  L  
Sbjct: 228 IKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTS 287

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET---CAPISLENPLVGVR 361
            +   SL+   +G  PL  E++E   K   G  +++GYG TET   CA     N      
Sbjct: 288 -YKFKSLRHCVTGGEPLNPEVLEQ-WKAQTGLDLYEGYGQTETGLICA-----NFKGMKI 340

Query: 362 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE 421
           + GS G      + QI+  D    LPP   G+I +R     P      F +F+ ++   E
Sbjct: 341 KPGSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRP------FCLFSCYVDNPE 393

Query: 422 HTDSFIRG 429
            T + IRG
Sbjct: 394 KTAATIRG 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 64.3 bits (156), Expect = 6e-11
 Identities = 105/452 (23%), Positives = 181/452 (40%), Gaps = 70/452 (15%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           + FL R S  Y ++ ++I   +    ++ Q      +++ S   L ITK DVV + APN+
Sbjct: 17  ITFLKRASECYPNRTSIIYGKT--RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNT 74

Query: 90  -----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD-- 142
                +HF      V   GA+ +  N     + ++  ++ + PK++          ++  
Sbjct: 75  PAMYEMHF-----AVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVL 129

Query: 143 ---------LNLPAVLLGSKD---KVSS-----SGLISRSSKIVSFHDLIELSGSVTDIP 185
                    LNLP + +   D   + SS       LI R     S      L   +  I 
Sbjct: 130 HLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPS------LVARMFRIQ 183

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245
           D    + D  +L Y+SGTT   KGV+++H+    ++L      E+      V L  LPMF
Sbjct: 184 D----EHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM--GTCPVYLWTLPMF 237

Query: 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
           H  G +   +    +G   V M         + IE + VT    VP +   L K + +  
Sbjct: 238 HCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL 296

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL-----------E 354
              S    V +G +P    L++  Q+   G  +   YG+TE   P+             E
Sbjct: 297 SPRSGPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354

Query: 355 NPLVGVR-RSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPGIVYINFF 411
           N  + ++ R G +   +A V+ +  + +T + +P +   +GEI ++G ++  G +     
Sbjct: 355 NQQMELKARQGVSILGLADVDVK--NKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 412 VFTLFL--W------GCEHTDSFIRGKDQQTD 435
               F   W      G  H D  +  KD+  D
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKD 444

Length = 579

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 87/387 (22%), Positives = 154/387 (39%), Gaps = 37/387 (9%)

Query: 25   PSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            PS  +VH L     A      AL+  D  + LS+++      +++H    +G+    +V 
Sbjct: 3092 PSERLVHQLIEAQVARTPEAPALVFGD--QQLSYAELNRRANRLAHRLIAIGVGPDVLVG 3149

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            +    S+   +  L V+  G      +P Y    L+  ++DS  KL++T   L ++    
Sbjct: 3150 VAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ---- 3205

Query: 144  NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
             LPA                     ++  D ++L+G   + P   V   + A ++Y+SG+
Sbjct: 3206 -LPAP---------------AGDTALTL-DRLDLNGYSENNPSTRVMGENLAYVIYTSGS 3248

Query: 204  TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGN 262
            TG  KGV + H    A +  +    E   ELD     +L M   F  +       L  G 
Sbjct: 3249 TGKPKGVGVRHG---ALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGG 3304

Query: 263  CVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
            C+V      +D E   +AI  +R+++    P  +   A+++     D +SL +   G   
Sbjct: 3305 CLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYVFGGEA 3362

Query: 321  LGKELMEDCQKNIPGATIFQGYGMTETC-APISLENPLVGVRRSGSA--GTLVAGVEAQI 377
            +     E  ++ +    +  GYG TE        +     V  +  A  G  VAG    +
Sbjct: 3363 VPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYV 3422

Query: 378  VSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            +    L P+P    GE+++ G  +  G
Sbjct: 3423 LD-GQLNPVPVGVAGELYIGGVGLARG 3448

Length = 3956

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 103/449 (22%), Positives = 167/449 (37%), Gaps = 105/449 (23%)

Query: 25  PSFSMVHFLFRNSASYSSKLA--LID--ADSD---ESLSFSQFKSIVIKVSHSFRHLGIT 77
           P+ ++V  + R +     KLA   +D   + D     L++SQF +    V    +   +T
Sbjct: 19  PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ--VT 76

Query: 78  KK-DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE------LSKQVKDSNPKLV 130
           K  D V I AP ++ + I F G +  G IA    P++  +E      L   + D  P  +
Sbjct: 77  KPGDRVAILAPQNLDYLIAFFGALYAGRIAV---PLFDPAEPGHVGRLHAVLDDCTPSAI 133

Query: 131 ITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD-- 186
           +T  +  + V+      PA                   ++++          V  +PD  
Sbjct: 134 LTTTDSAEGVRKFFRARPA---------------KERPRVIA----------VDAVPDEV 168

Query: 187 ------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVL 239
                     +   A L Y+SG+T +  GV +TH N     L +I A   L G+     +
Sbjct: 169 GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA---LEGQEGDRGV 225

Query: 240 CVLPMFHVFGLSVILYDQLQKGNCVVSM---------GKFDIEMALRAIEKYRVTVWWVV 290
             LP FH  GL  +L   L  G+ +  M         G++  E+A           +   
Sbjct: 226 SWLPFFHDMGLITVLLPALL-GHYITFMSPAAFVRRPGRWIRELA--RKPGGTGGTFSAA 282

Query: 291 PPIILALAKNSLVRK-----FDISSLKLVGSGAAPLGKELMEDCQK-----NIPGATIFQ 340
           P      A    + K      D+S++K + +G+ P+    M    +      +P   I  
Sbjct: 283 PNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKP 342

Query: 341 GYGMTE-----TCAPISLENPLVGVRRSG--------------------SAGTLVAGVEA 375
            YGM E     +  P+  E  ++ V R                      SAG +     A
Sbjct: 343 SYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWA 402

Query: 376 QIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            IV  +T   LP  Q+GEIW+ G N+  G
Sbjct: 403 VIVDPETASELPDGQIGEIWLHGNNIGTG 431

Length = 631

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 43/234 (18%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           V  +  DAA +L++SG+ G  KGV+ +HK+ +A    I    +     +   +  LP+FH
Sbjct: 360 VKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTP--NDRFMSALPLFH 417

Query: 247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--- 303
            FGL+V L+  L  G  V     F     L     YR+     VP   L   +N  V   
Sbjct: 418 SFGLTVGLFTPLLTGAEV-----FLYPSPLH----YRI-----VPE--LVYDRNCTVLFG 461

Query: 304 ------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP- 350
                         +D + L+ V +GA  L +   +  Q    G  I +GYG+TE CAP 
Sbjct: 462 TSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTE-CAPV 519

Query: 351 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           +S+  P+    + G+ G ++ G++A+++SV  ++     Q G + ++GPN+  G
Sbjct: 520 VSINVPMAA--KPGTVGRILPGMDARLLSVPGIE-----QGGRLQLKGPNIMNG 566

Length = 718

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 35/386 (9%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P    VH LF      + + A   A  +E+L +++      +++H+    G+    +V +
Sbjct: 508 PLQRGVHRLFEEQVERTPE-APALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGV 566

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-DL 143
               SI   +  L ++  G      +P Y    L+  ++DS  +L+++   L  K+    
Sbjct: 567 AMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAA 626

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
            +  + L   D+ ++                  L G   + P   +   + A ++Y+SG+
Sbjct: 627 GVQVLDL---DRPAA-----------------WLEGYSEENPGTELNPENLAYVIYTSGS 666

Query: 204 TGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKG 261
           TG  KG    H+        M  A+   VG+    VL   P    F +SV   +  L  G
Sbjct: 667 TGKPKGAGNRHRALSNRLCWMQQAYGLGVGD---TVLQKTPF--SFDVSVWEFFWPLMSG 721

Query: 262 NCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             +V        D    +  I +  V     VP ++ A  ++  V     +SL+ +    
Sbjct: 722 ARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSG 779

Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
             L  +  E     +P A ++  YG TE    ++    +     S   G  +A +   I+
Sbjct: 780 EALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYIL 839

Query: 379 SVDTLKPLPPNQLGEIWVRGPNVTPG 404
             + L+P+P   LGE+++ G  +  G
Sbjct: 840 DAN-LEPVPVGVLGELYLAGRGLARG 864

Length = 5163

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 60.3 bits (147), Expect = 8e-10
 Identities = 98/409 (23%), Positives = 158/409 (38%), Gaps = 78/409 (19%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS-- 89
           FL R +  Y  + A+I  D     ++++  +   +++ +    GI + D V +  PN   
Sbjct: 23  FLERAAEVYPDRPAVIHGD--RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPA 80

Query: 90  ---IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
               HF     GV   GA+ +T N     + ++  ++    K++I   E  +  ++    
Sbjct: 81  MVEAHF-----GVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVARE---- 131

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS--VTDI----------PDVSVKQT-- 192
                      +  L+     +V   D  E  G   +  +          PD +      
Sbjct: 132 -----------ALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPAD 180

Query: 193 --DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVF 248
             DA AL Y+SGTTG  KGV+  H+    A L   ++  L   +    V L  LPMFH  
Sbjct: 181 EWDAIALNYTSGTTGNPKGVVYHHR---GAYLNALSNI-LAWGMPKHPVYLWTLPMFHCN 236

Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL---AKNSLVRK 305
           G         + G   V + K D ++    I ++ VT  +   PI+L+    A       
Sbjct: 237 GWCFPWTVAARAGT-NVCLRKVDPKLIFDLIREHGVT-HYCGAPIVLSALINAPAEWRAG 294

Query: 306 FDISSLKLVGSGAAPLGK--ELMEDCQKNIPGATIFQGYGMTETCAPISL--------EN 355
            D     +V  GAAP       ME+      G  +   YG+TET  P ++          
Sbjct: 295 IDHPVHAMVA-GAAPPAAVIAKMEEI-----GFDLTHVYGLTETYGPATVCAWQPEWDAL 348

Query: 356 PL----VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRG 398
           PL        R G    L  GV   ++  DT++P+P +   +GEI  RG
Sbjct: 349 PLDERAQLKARQGVRYPLQEGV--TVLDPDTMQPVPADGETIGEIMFRG 395

Length = 545

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 80/342 (23%), Positives = 131/342 (38%), Gaps = 38/342 (11%)

Query: 65  IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124
            ++    R+ G++  D VL+  P+S       L  +A G +A  ANP     + +   ++
Sbjct: 41  ARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARN 100

Query: 125 SNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182
           + P LV+T   L D+ +   +   A L+    +V+                   + G   
Sbjct: 101 TEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPG-------------GYEPMGG--- 144

Query: 183 DIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHVVLC 240
                     DA A   Y+SGTTG  K  I  H +       M      L  E     LC
Sbjct: 145 ----------DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPE--DTGLC 192

Query: 241 VLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
              M+  +GL   ++  L  G + V++      E A     ++  +V + VP     +  
Sbjct: 193 SARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVID 252

Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG 359
           +     F   SL+ V S    L   L E   +   G  I  G G TE     +  +  V 
Sbjct: 253 SCSPDSF--RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQ--TFVSNRVD 308

Query: 360 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 401
             R G+ G ++   E ++V+ D     P  + G++WVRGP +
Sbjct: 309 EWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE-GDLWVRGPAI 349

Length = 705

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 69/308 (22%), Positives = 116/308 (37%), Gaps = 60/308 (19%)

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           G +    N     + L+  ++ ++ +L++T  E    +  L+LP V +          L 
Sbjct: 76  GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRV----------LD 125

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAA 220
             +    ++ +L+  +G++T   +V     D   L+++SGTTG  K V  +H    F   
Sbjct: 126 VDTP---AYAELVAAAGALTPHREVDAM--DPFMLIFTSGTTGAPKAVRCSHGRLAFAGR 180

Query: 221 SLMISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276
           +L       L    D V    +P+FH    + G +      +  G  V    KF     L
Sbjct: 181 ALT--ERFGLTR--DDVCYVSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFL 232

Query: 277 RAIEKYRVTVW-WVVPPI--ILAL------AKNSLVRKFDISSLKLVGSGAAPLGKELME 327
             + +Y  T + +V  P+  ILA       A N L   F        G+ A+P      E
Sbjct: 233 DDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASPRDIA--E 282

Query: 328 DCQKNIPGATIFQGYGMTETCAPISLEN--PLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 385
             ++   G  +  GYG +E    +  E   P       GS G    GV   I + +TL  
Sbjct: 283 FSRRF--GCQVEDGYGSSEGAVIVVREPGTP------PGSIGRGAPGVA--IYNPETLTE 332

Query: 386 LPPNQLGE 393
               +   
Sbjct: 333 CAVARFDA 340

Length = 540

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 86/383 (22%), Positives = 140/383 (36%), Gaps = 109/383 (28%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +AL D D   +LS+++      +++   R LG+   D V +    S       L ++  
Sbjct: 3   AIALRDDD--RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P Y    L   ++D+                    PA+LL            
Sbjct: 61  GAAYVPLDPSYPAERLQYMLEDAE-------------------PALLL------------ 89

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                              TD PD      D A ++Y+SG+TG  KGV ++H+     + 
Sbjct: 90  -------------------TD-PD------DLAYVIYTSGSTGKPKGVEVSHRAL--VNF 121

Query: 223 MISAHQEL-VGELDHVV----LCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK---FDIE 273
           ++S  +   +G  D ++    +        F +SV+ L   L  G  VV        D E
Sbjct: 122 LLSMARRPGLGASDRLLAVTTIS-------FDISVLELLLPLLSGATVVIASAETVRDPE 174

Query: 274 MALRAIEKYRVTVWWVVPP---IILA--LAKNSLVRKFDISSLKLVGSGAAP--LGKELM 326
              R I   R+T+    P    ++LA        +         L G  A P  L + L+
Sbjct: 175 RLARLIADERITIMQATPATWRMLLAAGWRGRESLT-------ALCGGEALPRDLAERLL 227

Query: 327 EDCQKNIPGATIFQGYGMTET-----CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD 381
                    A ++  YG TET     CA ++  +  V + R   A T V  ++       
Sbjct: 228 STG------AELWNMYGPTETTIWSTCARVTAADGPVTIGRP-IANTQVYVLDED----- 275

Query: 382 TLKPLPPNQLGEIWVRGPNVTPG 404
            L+P+PP   GE+++ G  V  G
Sbjct: 276 -LQPVPPGVPGELYIGGDGVARG 297

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 79/345 (22%), Positives = 127/345 (36%), Gaps = 65/345 (18%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S++Q      +V++  R  G+ + D VL+  PN        L  I +GA+   A  + T
Sbjct: 1   YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
            ++L                   D+       A+                          
Sbjct: 61  PADLR------------------DRFSRGKPKAI-------------------------- 76

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
                 V D      +  D   L ++SGTTG+ K V+ TH ++    L       L    
Sbjct: 77  ------VAD----ETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGD 126

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPP 292
            H+ +   P +     S   +     G  V  +   +FD    L A+EK+ VT  +  PP
Sbjct: 127 IHLNISS-PGWAKHAWSS-FFAPWNAGATVFGINYPRFDARRYLGALEKFGVTT-FCAPP 183

Query: 293 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS 352
            +  +     + ++D+   + V +G  PL  E++E  +K   G TI  GYG TET A I 
Sbjct: 184 TVWRMFIQQDLAQYDVRLREAVSAG-EPLNPEVIERVKKAW-GLTIRDGYGQTETTAMIG 241

Query: 353 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 397
             N      + GS G  + G   ++V +D      P   GEI + 
Sbjct: 242 --NSPGQKVKPGSMGRPLPGY--RVVLLDDEGKEIPVTEGEIALD 282

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 90/398 (22%), Positives = 160/398 (40%), Gaps = 56/398 (14%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            ++  +   + +Y   +A       + L++ Q K    +++   +   + KK  ++++  
Sbjct: 1   KLIEAIQAFAETYPQTIAY--RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGH 58

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD-SNPKLVITVPELWDKVKDLNLP 146
              H  + FLG I  G  A         SE  + + + + P+LVI   EL      ++  
Sbjct: 59  MEPHMLVAFLGSIKSGH-AYIPVDTSIPSERIEMIIEAAGPELVIHTAEL-----SIDAV 112

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
                         +I+     +S  +  E SG      D +VK  D   ++Y+SG+TG 
Sbjct: 113 GT-----------QIIT-----LSALEQAETSGGPVSF-DHAVKGDDNYYIIYTSGSTGN 155

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVV 265
            KGV ++H N ++ +  + A   L        L   P    F LSV+ LY  L  G  + 
Sbjct: 156 PKGVQISHDNLVSFTNWMLADFPLSEGK--QFLNQAP--FSFDLSVMDLYPCLASGGTLH 211

Query: 266 SMGKF---DIEMALRAIEKYRVTVWWVVPPII-LALAKNSLVRK-------FDISSLKLV 314
            + K    + ++    + K  + VW   P  + + L   +  ++       F     +L 
Sbjct: 212 CLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELP 271

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-TCAPISLE--NPLVGVRRSGSAGTLVA 371
              A    K L+E      P ATI+  YG TE T A  S++    ++        G    
Sbjct: 272 VKTA----KALLE----RFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKP 323

Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +   I+  +  +PLP  + GEI + GP+V+ G  Y+N
Sbjct: 324 DMNLFIMDEEG-EPLPEGEKGEIVIVGPSVSKG--YLN 358

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 96/425 (22%), Positives = 167/425 (39%), Gaps = 72/425 (16%)

Query: 28  SMVHFLFRNSASYSSKLAL--IDADSDES--LSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
           ++V  L R +A    +LAL  +  D  E   LS+         ++ + +         VL
Sbjct: 10  TLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASFGDRAVL 69

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE-----LSKQVKDSNPKLVITVPELWD 138
           +F P+   +   F G +  G IA  A P  +        L   + D+ P+L++TV +L D
Sbjct: 70  LF-PSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRD 128

Query: 139 KVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL 198
            +  +                   + + +++    L           + +++  D A L 
Sbjct: 129 SLLQME--------------ELAAANAPELLCVDTL--DPALAEAWQEPALQPDDIAFLQ 172

Query: 199 YSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258
           Y+SG+T + KGV ++H N +A   +I     +    D V++  LP++H  GL   L   +
Sbjct: 173 YTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPI 232

Query: 259 QKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALA----KNSLVRKFDISS 310
             G  CV+    + +E  LR   AI +Y  T+    P     L       S + + D+S 
Sbjct: 233 FSGVPCVLMSPAYFLERPLRWLEAISEYGGTISG-GPDFAYRLCSERVSESALERLDLSR 291

Query: 311 LKLVGSGAAPLGKELMEDCQKNIPGA-----TIFQGYGMTETCAPISLENPLVGVRR--- 362
            ++  SG+ P+ ++ +E   +          + F  YG+ E    +S      G RR   
Sbjct: 292 WRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVS------GGRRGQG 345

Query: 363 -------------------SGSA----GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
                              +GS     G    G    IV   +L+ L  N++GEIW  GP
Sbjct: 346 IPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGP 405

Query: 400 NVTPG 404
           ++  G
Sbjct: 406 SIAHG 410

Length = 4334

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.4 bits (141), Expect = 6e-09
 Identities = 76/381 (19%), Positives = 137/381 (35%), Gaps = 33/381 (8%)

Query: 25   PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
            P    VH LF      +   A+  A  ++ LS+++      +++H     G+    +V +
Sbjct: 3054 PLERGVHRLFEEQVERTPD-AVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGV 3112

Query: 85   FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                S+   +  L ++  G      +P Y    L+  ++DS  +L+++   L        
Sbjct: 3113 AVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-------- 3164

Query: 145  LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
                 L     V     + R  +  +  +           P +     + A ++Y+SG+T
Sbjct: 3165 ----RLPLAQGVQVL-DLDRGDENYAEAN-----------PAIRTMPENLAYVIYTSGST 3208

Query: 205  GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
            G  KGV + H         +     L G  D V+      F VF     L+  L  G  V
Sbjct: 3209 GKPKGVGIRHSALSNHLCWMQQAYGL-GVGDRVLQFTTFSFDVFVEE--LFWPLMSGARV 3265

Query: 265  VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDISSLKLVGSGAAPLGK 323
            V  G  D       +E        V+      L            +SLK +  G   L  
Sbjct: 3266 VLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325

Query: 324  ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 383
            +L    Q+   G  ++  YG TE    ++    +   + +   G  +A     I+   +L
Sbjct: 3326 DLQ---QQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD-GSL 3381

Query: 384  KPLPPNQLGEIWVRGPNVTPG 404
            +P+P   LGE+++ G  +  G
Sbjct: 3382 EPVPVGALGELYLGGEGLARG 3402

Length = 5163

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%)

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256
           +L +SGTTG  KG             + +         +   + V PMFH +G S ++  
Sbjct: 201 ILLTSGTTGTPKGA--RRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVL- 257

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKL 313
                  +V+  +FD E  L  I+++R T   VVP +   I+ L       ++   SL+ 
Sbjct: 258 AASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-NRYSGRSLRF 316

Query: 314 VGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV 373
             +  + +  +++        G  I+  Y  TE    I+   P        +AG    G 
Sbjct: 317 AAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEA-GMIATATPADLRAAPDTAGRPAEGT 374

Query: 374 EAQIVSVDTLKPLPPNQLGEIWVR 397
           E +I+  D  + +P  ++G I+VR
Sbjct: 375 EIRILDQD-FREVPTGEVGTIFVR 397

Length = 537

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 93/427 (21%), Positives = 177/427 (41%), Gaps = 104/427 (24%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF----------------LGV 99
           ++ +   IVIK+ +S R +G+  +    I+  NS  + I                  LG 
Sbjct: 81  TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGA 140

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSS 158
            A+  I S +       E  K       +L  T P   + +K + +   V    K++  +
Sbjct: 141 GAVEFIISHSEVSIVFVEEKKI-----SELFKTCPNSTEYMKTVVSFGGVSREQKEEAET 195

Query: 159 SGLISRSSKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
            GL+     I ++ + ++L  G   D+P    K++D   ++Y+SGTTG  KGV++++++ 
Sbjct: 196 FGLV-----IYAWDEFLKLGEGKQYDLP--IKKKSDICTIMYTSGTTGDPKGVMISNESI 248

Query: 218 IAAS-----LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---- 268
           +        L+ SA+  L   +  V L  LP+ H+F   +          C +  G    
Sbjct: 249 VTLIAGVIRLLKSANAAL--TVKDVYLSYLPLAHIFDRVI--------EECFIQHGAAIG 298

Query: 269 --KFDIEMALRAIEKYRVTVWWVVPPII--------LALAKNSLVRK--FDIS------- 309
             + D+++ +  + + + T++  VP ++          L+    ++K  FD +       
Sbjct: 299 FWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN 358

Query: 310 ----------------------------SLKLVGSGAAPLGKELMEDCQKNIPGATIFQG 341
                                       +++++ SGAAPL   + E   + +    + QG
Sbjct: 359 MKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQG 417

Query: 342 YGMTETCAP--ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK--PLPPNQLGEIWVR 397
           YG+TE+CA   +SL + L  +   G+ G  V  V+ ++ SV  ++   L     GEI +R
Sbjct: 418 YGLTESCAGTFVSLPDELDML---GTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIR 474

Query: 398 GPNVTPG 404
           G  +  G
Sbjct: 475 GKTLFSG 481

Length = 666

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 34/219 (15%)

Query: 47  IDADSD-----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101
           ID + D     E+L++SQ     + V+   R  G T  D  +I AP  + + + FLG + 
Sbjct: 23  IDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTG-DRAVILAPQGLEYIVAFLGALQ 81

Query: 102 IGAIA---STANPVYTVSE--LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV 156
            G IA   S   P     +  +S  ++D++P +V+T   + D V +             V
Sbjct: 82  AGLIAVPLSV--PQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEY------------V 127

Query: 157 SSSGLISRSSKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           +       +  ++   DL++L S   +D     +     A L Y+SG+T    GV+++H+
Sbjct: 128 APQPG-QSAPPVIEV-DLLDLDSPRGSDARPRDL--PSTAYLQYTSGSTRTPAGVMVSHR 183

Query: 216 NFIA--ASLMIS--AHQELVGELDHVVLCVLPMFHVFGL 250
           N IA    LM         V   D  V+  LP +H  GL
Sbjct: 184 NVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGL 222

Length = 578

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 57.2 bits (139), Expect = 8e-09
 Identities = 88/386 (22%), Positives = 143/386 (37%), Gaps = 88/386 (22%)

Query: 25  PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
             FS   + +R+ A      +AL    +DE L++ Q  + + +++  F   G+ +   V 
Sbjct: 2   MIFSD--WPWRHWAQVRPQAIALRL--NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVA 57

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           +   NS    + +L ++  GA     NP      L + +        +    L  +    
Sbjct: 58  LRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALV---LEGENTFS 114

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
            L ++ L   +   +          V++                       A +  +SG+
Sbjct: 115 ALTSLHLQLVEGAHA----------VAWQP------------------QRLATMTLTSGS 146

Query: 204 TGVSKGVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258
           TG+ K  + T +  +A+     SLM    Q      D  +L  LP+FHV G   I++  L
Sbjct: 147 TGLPKAAVHTAQAHLASAEGVLSLMPFTAQ------DSWLLS-LPLFHVSGQG-IVWRWL 198

Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  +V   K  +E AL        T   +VP  +  L  N         SLK V  G 
Sbjct: 199 YAGATLVVRDKQPLEQALAG-----CTHASLVPTQLWRLLDNRSEP----LSLKAVLLGG 249

Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTET----CAPISLENPLVGVRRSGSA--GTLVAG 372
           A +  EL E  ++   G   + GYG+TE     CA           R  G A  G+ + G
Sbjct: 250 AAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCA----------KRADGLAGVGSPLPG 297

Query: 373 VEAQIVSVDTLKPLPPNQLGEIWVRG 398
            E ++V             GEIW+RG
Sbjct: 298 REVKLVD------------GEIWLRG 311

Length = 458

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 35/362 (9%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           A+I A++ E +S+ Q       ++      G+   DVV + + NS    +     +  G 
Sbjct: 15  AVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGL 74

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 164
             +  N   T  E    V DS  ++++    L      +     L     ++S  G I  
Sbjct: 75  YITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPL-----RLSFGGEID- 128

Query: 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS- 221
                SF   +  +G     P ++ +Q   A +LYSSGTTG  KG+   L  ++  A   
Sbjct: 129 --GFGSFEAALAGAG-----PRLT-EQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGD 180

Query: 222 --LMISAHQELVGELDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGKFDIEMALRA 278
             + I+     + E D +     P++H   L    +   L  G  VV   +FD +  L  
Sbjct: 181 PIVAIARAFYDISESD-IYYSSAPIYHAAPLRWCSMVHAL--GGTVVLAKRFDAQATLGH 237

Query: 279 IEKYRVTVWWVVPPIILALAK-NSLVR-KFDISSLKLVGSGAAPLG---KELMEDCQKNI 333
           +E+YR+TV  +VP + + L K ++ VR ++D+SSL+ V   AAP     K  M D     
Sbjct: 238 VERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL--- 294

Query: 334 PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGE 393
            G  +++ Y  TE      +++P   +   GS G  V G     +  D    LP  ++G 
Sbjct: 295 -GPIVYEYYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLGDLH--ICDDDGNELPAGRIGT 350

Query: 394 IW 395
           ++
Sbjct: 351 VY 352

Length = 501

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG       T K     A  L  S +   V + D V           GL   L+  
Sbjct: 98  SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLG--LHYG 155

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  V+ +   + E  L  ++ ++ TV    P  +L LA+ +     D    SLK  
Sbjct: 156 AERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKG 215

Query: 315 GSGAAPLGKELMEDCQKNIP---GATIFQGYGMTETCAPISLE 354
             GA P  +E+    +K I    G   F  YG+TE   P + E
Sbjct: 216 IFGAEPWSEEM----RKVIENRFGCKAFDIYGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 74/370 (20%), Positives = 147/370 (39%), Gaps = 40/370 (10%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K+A+ +  +D  L++  +   V KV++       +K   + I   N I F   F G    
Sbjct: 17  KIAIKE--NDRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMA 73

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           G      +  +   EL +++  SN  +++T     + + D     + +   D+     +I
Sbjct: 74  GWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEI---DEWK--RMI 128

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
            +     +          + ++      Q     + ++SG+TG  K  +   ++++  S 
Sbjct: 129 EKYLPTYAP---------IENV------QNAPFYMGFTSGSTGKPKAFLRAQQSWLH-SF 172

Query: 223 MISAHQELVGELDHVVLCVLPMFHVFGLSVILY---DQLQKGNCVVSMGKFDIEMALRAI 279
             + H   +   D V L    + H    S+ LY     L  G  V  M KF     L  +
Sbjct: 173 DCNVHDFHMKREDSV-LIAGTLVH----SLFLYGAISTLYVGQTVHLMRKFIPNQVLDKL 227

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           E   ++V + VP ++ +L K     +   + +K++ SGA     E  E  +   P A ++
Sbjct: 228 ETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK-WEAEAKEKIKNIFPYAKLY 283

Query: 340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399
           + YG +E  + ++        RR  S G     V+ +I +    + +   ++G ++V+ P
Sbjct: 284 EFYGASEL-SFVTALVDEESERRPNSVGRPFHNVQVRICNEAG-EEVQKGEIGTVYVKSP 341

Query: 400 NVTPGIVYIN 409
               G  YI 
Sbjct: 342 QFFMG--YII 349

Length = 487

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 43/237 (18%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D   +F +      KV++ F+  G    DVV +F  N + F   +LG+  IG   +  N 
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
              +  L   +  S  K +I            NL   LL      + S     S   V+F
Sbjct: 61  NLRLESLLHCITVSKAKALIF-----------NLLDPLL------TQSSTEPPSQDDVNF 103

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAASLMISAHQE 229
            D +                      +Y+SGTTG+ K  ++ H     IAA     A+  
Sbjct: 104 RDKL--------------------FYIYTSGTTGLPKAAVIVHSRYYRIAA----GAYYA 139

Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
                + VV   LP++H  G  + +   L  G+ VV   KF          KY  T+
Sbjct: 140 FGMRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTI 196

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 88/392 (22%), Positives = 152/392 (38%), Gaps = 90/392 (22%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
            E L++ Q K     ++     L +  K  +++F   S      FLG +  G  A     
Sbjct: 25  GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG-HAYIPVD 83

Query: 112 VYTVSELSKQVKD-SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170
           V + +E  + + + + P L+I   EL      L +  +                   +++
Sbjct: 84  VSSPAERIEMIIEVAKPSLIIATEEL-----PLEILGI------------------PVIT 120

Query: 171 FHDLIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQ 228
             +L ++  +      D +VK  D   ++++SGTTG  KGV ++H N ++  + M+    
Sbjct: 121 LDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFA 180

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEK 281
             + E           +  F LSV+ LY  L  G  +V++ K   +M          + +
Sbjct: 181 --LPE--GPQFLNQAPYS-FDLSVMDLYPTLASGGTLVALPK---DMTANFKQLFETLPQ 232

Query: 282 YRVTVWWVVPPII-LALAKNSLVRKFD---ISSLK--------LVGSGAAPLGKELMEDC 329
             + VW   P    + L    L   F+   + +L         L    A    K+L+E  
Sbjct: 233 LPINVWVSTPSFADMCL----LDPSFNEEHLPNLTHFLFCGEELPHKTA----KKLLE-- 282

Query: 330 QKNIPGATIFQGYGMTE-TCAPISLE---------NPL-VGVRRSGSAGTLVAGVEAQIV 378
               P ATI+  YG TE T A  S+E           L +G  +  S           ++
Sbjct: 283 --RFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDS----------PLL 330

Query: 379 SVD-TLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +D     LP  + GEI + GP+V+ G  Y+N
Sbjct: 331 IIDEEGTKLPDGEQGEIVISGPSVSKG--YLN 360

Length = 503

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 29/216 (13%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS----IHFPICF---LGVIAI--- 102
           E +++ Q    V   +     LG  K++ V IFA       I    CF   + V+ I   
Sbjct: 105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYAS 164

Query: 103 ---GAIASTANP--VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
               A+  + N   V TV   SKQ+K    KL I +    + VK +    + +  +   S
Sbjct: 165 LGEEALCHSLNETEVTTVICDSKQLK----KL-IDISSQLETVKRV----IYMDDEGVDS 215

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
            S L   S+  VS    +E  G    +        D A ++Y+SG+TG+ KGV++TH N 
Sbjct: 216 DSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNI 275

Query: 218 IAASLMISAHQELVGELDH--VVLCVLPMFHVFGLS 251
           +A    ++    +V +L    V L  LP+ H+  L+
Sbjct: 276 VAT---VAGVMTVVPKLGKNDVYLAYLPLAHILELA 308

Length = 696

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 93/366 (25%), Positives = 150/366 (40%), Gaps = 56/366 (15%)

Query: 66  KVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124
           +++ +   LG+   D V   A N   H    + GV   GA+  T NP     +++  V  
Sbjct: 51  QLAQALAALGVEPGDRVGTLAWNGYRHLEAYY-GVSGSGAVCHTINPRLFPEQIAYIVNH 109

Query: 125 SNPKLV---ITVPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
           +  + V   +T   L D +     P V     +     + +      S+ ++ +  L+  
Sbjct: 110 AEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLPAG-----STPLLCYETLVGA 163

Query: 178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-----FIAA---SLMISAHQE 229
                D P     Q  A++L Y+SGTTG  KG + +H++     + AA   ++ +SA   
Sbjct: 164 QDGDYDWPRFDENQ--ASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARD- 220

Query: 230 LVGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTV 286
                   VL V+PMFHV  +GL    Y     G  +V  G   D +     IE  RVT 
Sbjct: 221 -------AVLPVVPMFHVNAWGLP---YSAPLTGAKLVLPGPDLDGKSLYELIEAERVTF 270

Query: 287 WWVVPPIILALAKNSLVRKFDISSLK--LVGSGAAPLGKELMEDCQKNIPGATIFQGYGM 344
              VP + L L  +        S+L+  ++G  A P     M    ++  G  +   +GM
Sbjct: 271 SAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACP---PAMIRTFEDEYGVEVIHAWGM 327

Query: 345 TE------TCAPIS--LENPLVGVRRS-GSAGTLVAGVEAQIVSVDTLKPLPPN--QLGE 393
           TE       C       + PL   R+     G ++ GV+ +IV  D  + LP +    G+
Sbjct: 328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDG-RELPWDGKAFGD 386

Query: 394 IWVRGP 399
           + VRGP
Sbjct: 387 LQVRGP 392

Length = 539

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 89/402 (22%), Positives = 162/402 (40%), Gaps = 55/402 (13%)

Query: 25   PSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            P   +VH L    +A+    +AL+  +  + L++ +      +++H    LG+  + +V 
Sbjct: 1571 PLARLVHQLIEDQAAATPEAVALVFGE--QELTYGELNRRANRLAHRLIALGVGPEVLVG 1628

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            I    S+   +  L ++  G      +P Y    L+  ++DS  +L++T   L  ++   
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP 1688

Query: 144  N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            + L +++L  +D                      L G     P V++   + A ++Y+SG
Sbjct: 1689 DGLRSLVLDQEDD--------------------WLEGYSDSNPAVNLAPQNLAYVIYTSG 1728

Query: 203  TTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSV----ILYDQ 257
            +TG  KG    H   +     + A QE        VVL     F  F   V    + +  
Sbjct: 1729 STGRPKGAGNRHGALVN---RLCATQEAYQLSAADVVL----QFTSFAFDVSVWELFWPL 1781

Query: 258  LQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
            +     V++      D E  ++ IE+ +VT    VP ++  L +     +  +S  ++V 
Sbjct: 1782 INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVC 1841

Query: 316  SGAAPLGKELMEDCQKNIPGATIFQGYGMTET--------CAPISLENPLVGVRRSGSAG 367
             G A L  E +    + +P   +F  YG TET        C    LE      R S   G
Sbjct: 1842 GGEA-LEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEG-----RDSVPIG 1895

Query: 368  TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
              +A +   I+   +L P+P    GE+++ G  +  G  Y+N
Sbjct: 1896 QPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARG--YLN 1934

Length = 3956

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241
            + P       D   L+++SGT+G  K V  TH+   +A +M++    L    D V    
Sbjct: 142 AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGP--DDVCYVS 199

Query: 242 LPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW-WVVPPIILA 296
           +P+FH    + G +V     L  G  +    KF     L  + +Y  T   +V  P+   
Sbjct: 200 MPLFHSNAVMAGWAV----ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYV 255

Query: 297 LAKNSLVRKFDISSLKLV-GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLEN 355
           LA        D + L++V G+  AP              G  +  G+G TE    I+   
Sbjct: 256 LATPERPDDAD-NPLRIVYGNEGAPGDIARFARRF----GCVVVDGFGSTEGGVAITRT- 309

Query: 356 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 388
           P       G+ G L  GV   IV  DT    PP
Sbjct: 310 P---DTPPGALGPLPPGV--AIVDPDTGTECPP 337

Length = 529

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
            D A +L++SG+ G  KGV+L+H+N +A    ++A  +   E    V   LP+FH FGL
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPE--DKVFNALPVFHSFGL 849

Length = 1140

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 53.9 bits (129), Expect = 8e-08
 Identities = 86/383 (22%), Positives = 152/383 (39%), Gaps = 58/383 (15%)

Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA-- 101
           +AL   D   +L + +  + V  ++   R   +++   VL+ + N    P  +L V+A  
Sbjct: 31  IALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNG---PETYLSVLACA 87

Query: 102 -IGAIASTAN---PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
            +GAIA  A+   P+  +    +          IT P            A L+    K++
Sbjct: 88  KLGAIAVMADGNLPIAAIERFCQ----------ITDPA-----------AALVAPGSKMA 126

Query: 158 SSGLISRSSKIVSFH-DLIELSGSVTDIPDVSVKQT-------DAAALLYSSGTTGVSKG 209
           SS +      I     D+  ++       D +           D  A++++SGTTG  K 
Sbjct: 127 SSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKA 186

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVV----LCVLPMFHVFGLSVILYDQLQKGNCVV 265
           V+L ++ F A   ++    E +  +  VV       LP  H+ GL  IL   +  G CV 
Sbjct: 187 VLLANRTFFAVPDILQK--EGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT 244

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
             G  +    L  +    V    +VP ++  L          + SL+LVG G +   + +
Sbjct: 245 --GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGS---RAI 299

Query: 326 MEDCQ-KNIPGATIFQGYGMTET-CAPISL--ENPLVGVRRSGSAGTLVAGVEAQIVSVD 381
             D +     G    Q YG++ET C  + L  ++  +    +G+ G    GV+  + + D
Sbjct: 300 AADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATD 359

Query: 382 TLKPLPPN-----QLGEIWVRGP 399
            + P  P        G +W++ P
Sbjct: 360 GIGPTAPGAGPSASFGTLWIKSP 382

Length = 540

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 35/254 (13%)

Query: 49  ADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108
           AD+    S+ + +  V+ +++  R  G+   D V +  P S+   +    ++  GA    
Sbjct: 478 ADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLP 537

Query: 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
            +  Y    L   ++D+ P L+IT  +   +  D+     L  +           + S+ 
Sbjct: 538 LDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ- 596

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
                           P         A ++++SG+TG  KGV++     +   L +  H 
Sbjct: 597 ----------------PH------HTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY 634

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFD-----IEMALRAIEKY 282
            L    D VVL   P    F +SV   +     G  +V M + +     + M  +   +Y
Sbjct: 635 PLTA--DDVVLQKTPC--SFDVSVWEFFWPFIAGAKLV-MAEPEAHRDPLAMQ-QFFAEY 688

Query: 283 RVTVWWVVPPIILA 296
            VT    VP ++ A
Sbjct: 689 GVTTTHFVPSMLAA 702

Length = 1296

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 33/323 (10%)

Query: 29   MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            +   L   +     ++AL+      SL +++  +   +++H  R  G+     V I A  
Sbjct: 1133 LPELLNEQARQTPERIALVWDG--GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAER 1190

Query: 89   SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            S    +  L ++  G      +P Y    L+  + DS  +L++T   L ++     LP  
Sbjct: 1191 SPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLER-----LPQA 1245

Query: 149  LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                 + VS+  L           D + L    +  P + +   + A ++Y+SG+TG  K
Sbjct: 1246 -----EGVSAIAL-----------DSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPK 1289

Query: 209  GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSM 267
            GV  TH         + A   L      V++   P+   F +SV   +  L  G  +V  
Sbjct: 1290 GVGNTHAALAERLQWMQATYALDD--SDVLMQKAPI--SFDVSVWECFWPLITGCRLVLA 1345

Query: 268  G---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
            G     D +     +++Y VT    VPP++       L      +SL+ + SG   L  E
Sbjct: 1346 GPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAA--ACTSLRRLFSGGEALPAE 1403

Query: 325  LMEDCQKNIPGATIFQGYGMTET 347
            L     + +P   +   YG TET
Sbjct: 1404 LRNRVLQRLPQVQLHNRYGPTET 1426

Length = 4334

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 10/100 (10%)

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS 365
           +D  SL+ V +GA  + KE          G  I +GYG+TET   I+L  P+    ++G+
Sbjct: 904 YDFRSLRYVFAGAEKV-KEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHN--KAGT 960

Query: 366 AGTLVAGVEAQIVSVDTLKPLPP-NQLGEIWVRGPNVTPG 404
            G L+ G+E +      L+P+P  ++ G ++VRGPNV  G
Sbjct: 961 VGRLLPGIEYR------LEPVPGIDEGGRLFVRGPNVMLG 994

Length = 1140

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 60/262 (22%)

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDHVVLCVLPMFH 246
           K  D   ++Y+SGT+G  KGV+LTH+        +    E   +    D V L  LP+ H
Sbjct: 218 KPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277

Query: 247 VF-----------GLSV--------ILYDQLQ--KGNCVVSMGK-FD-----IEMALRAI 279
           +            G SV         L D L   K   +  + + F+     I+ AL+ +
Sbjct: 278 ILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL 337

Query: 280 EK---------YRVTVWWV--------VPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
                      Y+  + W+          P+   LA   +  K     L+L+ SG APL 
Sbjct: 338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG-GRLRLLISGGAPLS 396

Query: 323 KELMEDCQKNIPGATIFQGYGMTETCAPISLENP----LVGVRRSGSAGTLVAGVEAQIV 378
            E+ E+  +    A + QGYG+TET  P +L  P    ++     G+ G      E ++ 
Sbjct: 397 TEI-EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCML-----GTVGAPAVYNELRLE 450

Query: 379 SVDTL--KPLPPNQLGEIWVRG 398
            V  +   PL     GEI VRG
Sbjct: 451 EVPEMGYDPLGEPPRGEICVRG 472

Length = 660

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY- 113
           +++++    ++        LG+TK   V I+      +     G+ +   +A+T   VY 
Sbjct: 122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAAT---VYA 178

Query: 114 TVSE--LSKQVKDSNPKLVI----TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
            + E  L+  ++++  K ++     VP L   +K   +P   +   D + +S + +   +
Sbjct: 179 NLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS-VDTEGCR 237

Query: 168 IVSFHDLIELSGSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
           +V++ D++    S       ++     D A ++Y+SGTTG  KGV+ TH + + A ++  
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGS-LTAGILAL 296

Query: 226 AHQ--ELVGEL--DHVVLCVLPMFHVFGLSV 252
             +  +L+G    D      LP+ H+    V
Sbjct: 297 EDRLNDLIGPPEEDETYCSYLPLAHIMEFGV 327

Length = 700

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 74/360 (20%), Positives = 139/360 (38%), Gaps = 65/360 (18%)

Query: 45  ALIDADSDES---LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101
           AL+  D       +++++ +  V  ++ + R LG+   D V  + PN     +  L   +
Sbjct: 102 ALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATAS 161

Query: 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKDL--NLPAV-- 148
           +GAI S+ +P +    +  + +   PKL+ TV             DKV ++   LP +  
Sbjct: 162 VGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRA 221

Query: 149 -----LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV--SVKQTDAAALLYSS 201
                 LG ++          + KI    DL + + +      V   +       +L+SS
Sbjct: 222 VVHIPYLGPRETE--------APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSS 273

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELV-------GE-LDHVVLCVLPMFH------V 247
           GTTG+ K ++ +     A   ++   +E         G+ L +       M++       
Sbjct: 274 GTTGLPKCIVHS-----AGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLVSGLA 328

Query: 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRK 305
            G +++LYD         S G     +     E+   T++      ++A  K  +   R 
Sbjct: 329 TGATLVLYDG--------SPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPART 380

Query: 306 FDISSLKLVGSGAAPL---GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR 362
            D+S+L+ V S  +PL   G   + D  K      +    G T+ C+  +  NP + V  
Sbjct: 381 HDLSALQCVASTGSPLPPDGFRWVYDEIK--ADVWLASISGGTDICSCFAGANPTLPVHI 438

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 40/76 (52%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           SL+F +    V +++     LG+ + D V + A NSI F + FL ++ +GA+    NP  
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 114 TVSELSKQVKDSNPKL 129
              EL +Q+ D  P L
Sbjct: 61  PQEELQQQLADLQPDL 76

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 73/272 (26%), Positives = 113/272 (41%), Gaps = 42/272 (15%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGL 250
            + AL Y+SGTT   KGV+L H+    A LM +    L+  ++   V L  LPMFH  G 
Sbjct: 196 QSIALGYTSGTTASPKGVVLHHR---GAYLM-ALSNALIWGMNEGAVYLWTLPMFHCNGW 251

Query: 251 SVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
               +       C  +  + +   +    AI  Y VT  +   P++L    N+   +  +
Sbjct: 252 C---FTWTLAALCGTNICLRQVTAKAIYSAIANYGVT-HFCAAPVVLNTIVNAPKSETIL 307

Query: 309 SSLKLVG---SGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL---------ENP 356
              ++V    +GAAP    L    +K   G  +   YG++ET  P ++           P
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAMSEK---GFRVTHTYGLSETYGPSTVCAWKPEWDSLPP 364

Query: 357 LVGVRRSGSAGTLVAGVEA-QIVSVDTLKPLPPN--QLGEIWVRGPNVTPGIVYIN---- 409
               R +   G    G+E   +V   T+KP+P +   +GEI +RG  V  G  Y+     
Sbjct: 365 EEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKG--YLKNPKA 422

Query: 410 ---FFVFTLFLWG---CEHTDSFIRGKDQQTD 435
               F    F  G    +H D +I  KD+  D
Sbjct: 423 NEEAFANGWFHSGDLGVKHPDGYIEIKDRSKD 454

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 86/416 (20%), Positives = 137/416 (32%), Gaps = 82/416 (19%)

Query: 40  YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
           Y  +  L +A     L +   ++     +     LG+   D V + A     F   F   
Sbjct: 40  YDRRGQLEEA-----LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC 94

Query: 100 IAIGAI-ASTANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKD--LNLPAVL 149
              G +      P+       Y +++L   +  + P  +IT  EL   V +     P + 
Sbjct: 95  QYAGLVPVPLPLPMGFGGRESY-IAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH 153

Query: 150 LGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
           + S                        L  +   +P  +    D A L YSSG+T   +G
Sbjct: 154 VLSHA------------------WFKALPEADVALPRPT--PDDIAYLQYSSGSTRFPRG 193

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCV--LPMFHVFGLSVILYDQLQKGNCVVSM 267
           VI+TH+  +A    IS     V   D    CV  LP +H  GL   L   +     V  +
Sbjct: 194 VIITHRALMANLRAISHDGLKVRPGDR---CVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250

Query: 268 GKFDIEMA----LRAIEKYRVTVWWVVPPIILAL----AKNSLVRKFDISSLKLVGSGAA 319
              D        L  I + R T+    PP    L      +  + + D+S  ++ G GA 
Sbjct: 251 PTRDFARRPLQWLDLISRNRGTI-SYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGAD 309

Query: 320 PLGKELMED-----CQKNIPGATIFQGYGMTETCAPISLENPLVGVR----------RSG 364
            +  +++                    YG+ E    +S      G+             G
Sbjct: 310 MIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQG 369

Query: 365 SA----------------GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            A                G  + G E +I +     PLP   +G I VRGP++  G
Sbjct: 370 KAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAG-MPLPERVVGHICVRGPSLMSG 424

Length = 579

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 21/108 (19%)

Query: 301 SLVRKFDISSLKLVGSGAAPLG---KELMEDCQKNIPGATIFQGYGMTET--CAPISLEN 355
           S  R      ++ + SG  PL    +E +     N+    + QG+G+TET  C  I    
Sbjct: 420 SAPRAVLGGRVRAMLSGGGPLSAATQEFV-----NVVFGMVIQGWGLTETVCCGGIQ--- 471

Query: 356 PLVGVRRSGSAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRGP 399
              G     + G L+ GVE +++  +    T  P P    GEI +RGP
Sbjct: 472 -RTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR---GEILLRGP 515

Length = 700

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 61/269 (22%)

Query: 19  LVLPSDPSFSMVHFLFRNSASYSSKLA--LIDADSDES-----LSFSQFKSIVIKVSHSF 71
           + LP  P  +++  + RN A+    +A   +D     +     L+++Q    +  V    
Sbjct: 28  IALP--PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARL 85

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT------VSELSKQVKDS 125
           + +     D V I AP  I +   F   I  G IA    P++          L   ++D+
Sbjct: 86  QQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAV---PLFAPELPGHAERLDTALRDA 141

Query: 126 NPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
            P +V+T     + V+    NLP +               R  +++          ++  
Sbjct: 142 EPTVVLTTTAAAEAVEGFLRNLPRL---------------RRPRVI----------AIDA 176

Query: 184 IPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGEL 234
           IPD        V +   D + L Y+SG+T    GV +TH+      + MI +    +  L
Sbjct: 177 IPDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILS----IDLL 232

Query: 235 DHVVLCV--LPMFHVFGLSVILYDQLQKG 261
           D     V  LP++H  GLS+I +  +  G
Sbjct: 233 DRNTHGVSWLPLYHDMGLSMIGFPAVYGG 261

Length = 612

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            ++ S+ +S V +V+++   LG  K D + I  P ++H  I +L +I  G +  +    +
Sbjct: 208 RMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSF 267

Query: 114 TVSELSKQVKDSNPKLVIT----------VPELWDKVKDLNLP-AVLLGSKDKVSSSGLI 162
             SE++ ++K S  K + T          +P L+ +V +   P A++L +  K     L 
Sbjct: 268 APSEIATRLKISKAKAIFTQDVIVRGGKSIP-LYSRVVEAKAPKAIVLPADGKSVRVKL- 325

Query: 163 SRSSKIVSFHDLIELSGSVTDIPD--VSVKQTDAAA--LLYSSGTTGVSKGVILTHKNFI 218
                 +S+ D +  +  +   PD   +V+Q   A   +L+SSGTTG  K +  T    +
Sbjct: 326 --REGDMSWDDFLARANGL-RRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPL 382

Query: 219 AASLMISAHQEL 230
            A+    AH ++
Sbjct: 383 RAAADAWAHLDI 394

Length = 728

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 74/331 (22%), Positives = 118/331 (35%), Gaps = 56/331 (16%)

Query: 41  SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100
           S  +A+I  +     S+ +       ++ S R  GI   D  L+   N   F I F  ++
Sbjct: 37  SDAIAVICGE--RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALL 94

Query: 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 160
            +G     A   +  SEL+       P L+I          D      L    D +++  
Sbjct: 95  KLGVAPVNALFSHQRSELNAYASQIEPALLIA---------DRQHA--LFSDDDFLNTLV 143

Query: 161 LISRSSKIVSFH---------DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
               S ++V            D I       D         + A    S G+TG  K + 
Sbjct: 144 AEHSSLRVVLLLNDDGEHSLDDAINHPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIP 201

Query: 212 LTHKNF---IAASLMI---SAHQELVGELDHVVLCVLPMFHVFGLSV-----ILYDQLQK 260
            TH ++   +  S+ I   +             LC LP  H + +S      +       
Sbjct: 202 RTHNDYYYSVRRSVEICGFTPQTRY--------LCALPAAHNYPMSSPGALGVFL----A 249

Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP-IILALAKNSLV-RKFDISSLKLVGSGA 318
           G  VV        +    IEK++V V  +VPP + L L   +    +  ++SLKL+  G 
Sbjct: 250 GGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGG 309

Query: 319 APLGKELMEDCQKNIP---GATIFQGYGMTE 346
           A L + L     + IP   G  + Q +GM E
Sbjct: 310 ARLSETL----ARRIPAELGCQLQQVFGMAE 336

Length = 536

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 53  ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           ++ ++S+   +V++ +H       +   D V I   NS  F   +L + +IGA+ +  N 
Sbjct: 4   KTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINY 63

Query: 112 VYTVSELSKQVKDSNPKLVITVPE 135
             +   L   +K S  K VI  P+
Sbjct: 64  NLSGDPLIHCLKISGAKFVIVDPD 87

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISA---HQELVGELDHVVLCVLPMFHVFG 249
           D A ++ +SGTTG  KG +LT     AA+L  SA   H  L G      L  LP  H+ G
Sbjct: 36  DVALVVATSGTTGTPKGAMLT-----AAALTASADATHDRLGGPGQW--LLALPAHHIAG 88

Query: 250 LSVILYDQLQKGNCV---VSMGKFDIEMALRAIEKYRV-TVWWVVPPIILALAKNSLVRK 305
           L V++   +     V   VS G FD     RA+ +      +  + P+ LA A +     
Sbjct: 89  LQVLVRSVIAGSEPVELDVSAG-FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT 147

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 348
             ++ L  V  G  P    +++       G  + + YGM+ET 
Sbjct: 148 AALAELDAVLVGGGPAPAPVLDAAAA--AGINVVRTYGMSETS 188

Length = 358

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 81/402 (20%), Positives = 145/402 (36%), Gaps = 51/402 (12%)

Query: 15  LRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDA---------DSDESLSFSQFKSI 63
           +R  L+ P  P     ++    R   +  + LA+  A         D D +LS+ + +  
Sbjct: 10  VRSGLLNPPSPRAVLRLLREASRGGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRA 69

Query: 64  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 123
              ++      G+     V +   N   F      V  +GA     +  +    L+  ++
Sbjct: 70  TESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALR 129

Query: 124 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
             +   V+   E  +++   +  AV +       +     R +        +   G +  
Sbjct: 130 AHHISTVVADNEFAERIAGAD-DAVAVIDPATAGAEESGGRPA--------VAAPGRI-- 178

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
                        +L +SGTTG  KGV    +   A  + ++            +   +P
Sbjct: 179 -------------VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMP 225

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKN 300
           MFH  GL +++   +  G  V++   FD E AL     +R   +  VP +   IL L   
Sbjct: 226 MFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPR 284

Query: 301 SLVRKFDISSLKLVGSGA----APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP 356
              R   +  L++V S        LG+  M+       G  ++ GYG TE     +L  P
Sbjct: 285 VRARN-PLPQLRVVMSSGDRLDPTLGQRFMDTY-----GDILYNGYGSTEVGIG-ALATP 337

Query: 357 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 398
                   + G  VAG   +I+  +  +P+ P   G I+V G
Sbjct: 338 ADLRDAPETVGKPVAGCPVRILDRNN-RPVGPRVTGRIFVGG 378

Length = 516

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 63/397 (15%)

Query: 30   VHFLFRNSASYSSK-LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            +H LF   A+ + +  AL  A   ++LS+++  +   +++ + R  G+  +  V +    
Sbjct: 2190 LHGLFAAQAARTPQAPALTFAG--QTLSYAELDARANRLARALRERGVGPQVRVGLALER 2247

Query: 89   SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            S+   +  L ++  G      +P Y +  L   ++DS   L+++   L++ + +  LPA 
Sbjct: 2248 SLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGE--LPA- 2304

Query: 149  LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                   V+   L   ++ + ++ D          +P +S+ Q   A L+Y+SG+TG  K
Sbjct: 2305 ------GVARWCLEDDAAALAAYSD--------APLPFLSLPQ-HQAYLIYTSGSTGKPK 2349

Query: 209  GVILTHKNF-------IAASLMISAHQELVGELDHVVLCVLPMFHVFGL-----SVILYD 256
            GV+++H          I    M +   EL               H + +     S  L  
Sbjct: 2350 GVVVSHGEIAMHCQAVIERFGMRADDCEL---------------HFYSINFDAASERLLV 2394

Query: 257  QLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
             L  G  VV  + G++  E   + I + +V++    P     LA+  L  + +   +++ 
Sbjct: 2395 PLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQ-WLAGQGEQLPVRMC 2453

Query: 315  GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC-------APISLENPLVGVRRSGSAG 367
             +G   L  E ++  ++       F  YG TET        AP  LE     V      G
Sbjct: 2454 ITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASV----PIG 2509

Query: 368  TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
             +V    A I+  D L  +P    GE++V G  +  G
Sbjct: 2510 RVVGARVAYILDAD-LALVPQGATGELYVGGAGLAQG 2545

Length = 4334

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 40/100 (40%), Positives = 50/100 (50%), Gaps = 22/100 (22%)

Query: 316 SGAAPLGKELMEDCQK--NIP-GATIFQGYGMTETCAPISL---ENPLVGVRRSG----- 364
           SG APL      D Q+  NI  GA I QGYG+TETCA  +    ++  VG  R G     
Sbjct: 427 SGGAPLSG----DTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVG--RVGPPLPC 480

Query: 365 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
               LV+  E   +  D  KP+P    GEI + GP+VT G
Sbjct: 481 CYVKLVSWEEGGYLISD--KPMPR---GEIVIGGPSVTLG 515

Length = 696

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +A++  D  +SL++ +      +++H  R  G+   D+V I    S    +  L V+  
Sbjct: 3   AVAVVFGD--QSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           GA     +P Y    L+  ++DS  KL++T P+
Sbjct: 61  GAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD 93

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
           ++LS +++D +   +    E  +K+KDL         K+K    G+      I+ F D+ 
Sbjct: 244 NDLSNELEDISLGPLEYDKEKLEKIKDL---------KEKAKKLGI-----SIILFDDMT 289

Query: 176 ELSGSVTDIPDVSVKQTDA---AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 232
           +         +  ++  D     +++Y+SGT+G  KGV+L++KN     + +  H     
Sbjct: 290 K-----NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 233 ELDHVVLCVLPMFHVF 248
                 L  LP+ H++
Sbjct: 345 YNPKTHLSYLPISHIY 360

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.96
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.94
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.94
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.91
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.9
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.79
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.75
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.72
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.38
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.93
PLN02620	612	indole-3-acetic acid-amido synthetase	96.46
PLN02249	597	indole-3-acetic acid-amido synthetase	96.32
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.12
PLN02247	606	indole-3-acetic acid-amido synthetase	95.97
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	95.83
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	92.36
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	91.96
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	87.94
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	86.44
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	85.77
PRK08315	559	AMP-binding domain protein; Validated	84.72
PRK12583	558	acyl-CoA synthetase; Provisional	82.83
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	82.33
PRK04319	570	acetyl-CoA synthetase; Provisional	81.28
PLN03051	499	acyl-activating enzyme; Provisional	80.46
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	80.39
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	80.23

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=3.3e-62  Score=436.21  Aligned_cols=392  Identities=25%  Similarity=0.330  Sum_probs=343.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+++++...+++.||+.|++....+.++||+||.+.++++|+.|.++|+++||||++..||+.+|+.++|||.++|.+.
T Consensus        50 ~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~  129 (596)
T KOG1177|consen   50 ETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVL  129 (596)
T ss_pred             ccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEE
Confidence            69999999999999999999988778889999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccH-----HHHhhcC------------------CCcEEeccCCccccccccc
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDLN------------------LPAVLLGSKDKVSSSGLIS  163 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~------------------~~~~~~~~~~~~~~~~~~~  163 (435)
                      +++||++...+++..|++.+++++|+.+.+.     +.+.++.                  ...+++..++        .
T Consensus       130 v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed--------~  201 (596)
T KOG1177|consen  130 VNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED--------H  201 (596)
T ss_pred             eccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC--------C
Confidence            9999999999999999999999999976432     2222221                  1233333321        3


Q ss_pred             ccccccchhhhhhhcCCCCC----CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEE
Q 013850          164 RSSKIVSFHDLIELSGSVTD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVL  239 (435)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l  239 (435)
                      ...+...+++++.....+..    .......|++++.|.|||||||.|||+.+||.|++++......+..+...  ++++
T Consensus       202 ~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~--~~i~  279 (596)
T KOG1177|consen  202 PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEK--HRIC  279 (596)
T ss_pred             cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcc--eEEE
Confidence            45567778888766553111    12356679999999999999999999999999999998888887777654  8999


Q ss_pred             ecchHHHHHHHHHHHHhhhhcCcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecC
Q 013850          240 CVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA  318 (435)
Q Consensus       240 ~~~~l~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG  318 (435)
                      +..|++|++|.....+.+|..|++++++ +.|++...+++|++++||.++++|+++..|++.+.....+++++|..+.||
T Consensus       280 ~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigG  359 (596)
T KOG1177|consen  280 IPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGG  359 (596)
T ss_pred             ecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCC
Confidence            9999999999888999999999999997 579999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCC-CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEe
Q 013850          319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG-VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR  397 (435)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~  397 (435)
                      +++++++++.+.+...=..+...||+||++...+.....+. ..+..++|+.+++.+..|+| +.|..++.|..||||+|
T Consensus       360 a~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iR  438 (596)
T KOG1177|consen  360 APVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIR  438 (596)
T ss_pred             CCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEE
Confidence            99999999999996643568889999999998888776654 55678999999999999999 79999999999999999


Q ss_pred             CCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          398 GPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       398 g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |++.|.|  ||++++.|.+..+   .+.|+.|||++.
T Consensus       439 GY~tMl~--Ywg~~~kT~eti~---~drW~~TGDi~~  470 (596)
T KOG1177|consen  439 GYSTMLG--YWGEEEKTKETIG---NDRWYDTGDIAV  470 (596)
T ss_pred             echhhee--ecCCcccchhhcc---cccceecCceEE
Confidence            9999999  9999999999885   788999999874

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1e-60  Score=456.43  Aligned_cols=385  Identities=39%  Similarity=0.602  Sum_probs=320.3

Q ss_pred             HhhcccCCCc-eeeeecCC-CcceeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEec
Q 013850           34 FRNSASYSSK-LALIDADS-DESLSFSQFKSIVIKVSHSFRHLG--ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA  109 (435)
Q Consensus        34 ~~~~~~~p~~-~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~g--~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i  109 (435)
                      .+.+..++++ +.++..+. |+.+||.|+.+++.++|.+|.++|  +++||+|++++||+++++.+++||+.+|+++.++
T Consensus        23 ~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~  102 (537)
T KOG1176|consen   23 GRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL  102 (537)
T ss_pred             cccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence            3444444544 66665542 699999999999999999999765  8999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcccccccccccccccc-hhhhhhhcCCCCCC
Q 013850          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVS-FHDLIELSGSVTDI  184 (435)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  184 (435)
                      ||.+.+.++.+.++.++++++|++....+.+....    ...+++......   ........... +..+.....  ...
T Consensus       103 Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~  177 (537)
T KOG1176|consen  103 NPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGV---ISISDLVEDLDAFEDLMPEGL--PDG  177 (537)
T ss_pred             CcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCc---cccccccccccchhhccccCC--Ccc
Confidence            99999999999999999999999999988886654    333333322000   00011111111 444443333  222


Q ss_pred             CCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEE
Q 013850          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (435)
Q Consensus       185 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i  264 (435)
                       ....+++|++.|+|||||||.||||++||++++.+.......+.+..  .|+.++.+|++|++|+...++..+..|+++
T Consensus       178 -~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~--~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~i  254 (537)
T KOG1176|consen  178 -IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTS--DDVYLCTLPLFHIYGLITLLLSLLAGGTTI  254 (537)
T ss_pred             -cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCC--CceEEEechHHHHhHHHHHHHHHHhCCceE
Confidence             56677899999999999999999999999999998665555455544  399999999999999986677788888888


Q ss_pred             EecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  344 (435)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~  344 (435)
                      ++...|++..+++.+++|++|++.++|.++..|++.+.....+++++|.+.+||+++++++.+++++++|+..+.+.||+
T Consensus       255 i~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGm  334 (537)
T KOG1176|consen  255 ICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGM  334 (537)
T ss_pred             EECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeecc
Confidence            88889999999999999999999999999999999987778899999999999999999999999999998999999999


Q ss_pred             ccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccC
Q 013850          345 TETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTD  424 (435)
Q Consensus       345 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~  424 (435)
                      ||++++++.+...+. .+++++|.++++++.+|.+ ++|+.+++++.||||++|+++|.|  ||+||+.|++.|.   .+
T Consensus       335 TE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkG--Y~~NpeaT~~~~~---~~  407 (537)
T KOG1176|consen  335 TEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKG--YLKNPEATKEAFD---DD  407 (537)
T ss_pred             ccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchh--hcCChHHHHhhcc---cC
Confidence            999988887766643 6899999999988888888 899999999999999999999999  9999999998882   23


Q ss_pred             cceecCCCC
Q 013850          425 SFIRGKDQQ  433 (435)
Q Consensus       425 ~~~~tgD~~  433 (435)
                      |||+|||+|
T Consensus       408 GW~~TGDiG  416 (537)
T KOG1176|consen  408 GWFHTGDLG  416 (537)
T ss_pred             CccccCceE
Confidence            677777764

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-59  Score=473.19  Aligned_cols=414  Identities=18%  Similarity=0.274  Sum_probs=319.8

Q ss_pred             cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCC---cceeHHHHHHHHHHHHHHHHh---CCCCCC---
Q 013850            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRH---LGITKK---   79 (435)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~---~g~~~g---   79 (435)
                      ..+||..+.+...+.....|+.++|.++++++|+++|+++.+.+   +.+||+||.+++.++|++|.+   +|+++|   
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~  122 (746)
T PTZ00342         43 SSVYCMKDHKKKSSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYN  122 (746)
T ss_pred             CCceecCchhhcccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccc
Confidence            34666444332233223389999999999999999999874323   689999999999999999997   499999   


Q ss_pred             --------CEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CC
Q 013850           80 --------DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP  146 (435)
Q Consensus        80 --------d~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~  146 (435)
                              |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++++.++++++|++.+..+.+....     .+
T Consensus       123 ~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~  202 (746)
T PTZ00342        123 EEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLK  202 (746)
T ss_pred             cccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCce
Confidence                    99999999999999999999999999999999999999999999999999999887776655432     12


Q ss_pred             cEEeccCCcccc-----------------cccc-----------------------------------------cccccc
Q 013850          147 AVLLGSKDKVSS-----------------SGLI-----------------------------------------SRSSKI  168 (435)
Q Consensus       147 ~~~~~~~~~~~~-----------------~~~~-----------------------------------------~~~~~~  168 (435)
                      .+++........                 ....                                         ......
T Consensus       203 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  282 (746)
T PTZ00342        203 KLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISI  282 (746)
T ss_pred             EEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEE
Confidence            233322210000                 0000                                         000011


Q ss_pred             cchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHH
Q 013850          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (435)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~  248 (435)
                      ..|+++.+...  .........++++++|+|||||||.||||++||+|+++.+.............++++++++|++|++
T Consensus       283 ~~~~~~~~~~~--~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~  360 (746)
T PTZ00342        283 ILFDDMTKNKT--TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY  360 (746)
T ss_pred             EEHHHHHhhcc--cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHH
Confidence            12233322211  1222344578999999999999999999999999999886654322111122348999999999999


Q ss_pred             HHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhc--------ccccC---------------
Q 013850          249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--------SLVRK---------------  305 (435)
Q Consensus       249 g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~--------~~~~~---------------  305 (435)
                      ++. ..+.++..|+++++.+. ++..+++.|+++++|+++++|.+|..|.+.        +..+.               
T Consensus       361 ~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~  438 (746)
T PTZ00342        361 ERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNN  438 (746)
T ss_pred             HHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc
Confidence            995 67788999999998865 899999999999999999999999988752        10000               


Q ss_pred             -------------------CCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCc
Q 013850          306 -------------------FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA  366 (435)
Q Consensus       306 -------------------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~  366 (435)
                                         ...++||.+++||+++++++.++|++.++ ++++++||+||+++.++...+.  ..+.+++
T Consensus       439 ~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~~~~~~~~--~~~~gsv  515 (746)
T PTZ00342        439 GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGPIFVQHAD--DNNTESI  515 (746)
T ss_pred             CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCcccceeeeccCC--CCCcccc
Confidence                               01268999999999999999999999886 9999999999998777665544  4578899


Q ss_pred             cccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          367 GTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       367 G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |.|+ |+++++|+|.+++.....++.|||+++||+++.|  ||++|+.|++.|   +.||||+|||+++
T Consensus       516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~G--Y~~~pe~T~~~f---~~dGW~~TGDig~  579 (746)
T PTZ00342        516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSG--YFLEKEQTKNAF---TEDGYFKTGDIVQ  579 (746)
T ss_pred             cCcCCCcEEEEEecccccccCCCCCceEEEEecCccccc--ccCChhhhhhhc---CcCCcccCCcEEE
Confidence            9998 9999999986665555666789999999999999  999999999987   3578999999863

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.9e-59  Score=460.46  Aligned_cols=392  Identities=34%  Similarity=0.495  Sum_probs=325.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|.++++.+|+++|+++.+....+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus        11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~   90 (534)
T COG0318          11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVA   90 (534)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEE
Confidence            78999999999999999999988533349999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC---cEEeccCCcccccccccccccc-cchhhhhhhcCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP---AVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVT  182 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  182 (435)
                      +|+||.+...++.++++.++++++++++.+.+.+......   ...+....        ...... ..+++....... .
T Consensus        91 vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~  161 (534)
T COG0318          91 VPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG--------DADDRLPITLEALAAEGPG-P  161 (534)
T ss_pred             eecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecc--------cccccccccHHHHhhccCC-c
Confidence            9999999999999999999999999998855544444321   11111110        000000 244555332221 1


Q ss_pred             CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                      .......+++++++|+|||||||.||+|++||+|+..+...............|++++.+|++|.+|+...++.++..|+
T Consensus       162 ~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~  241 (534)
T COG0318         162 DADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGG  241 (534)
T ss_pred             ccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCC
Confidence            22222278999999999999999999999999999988776655555112333899999999999999877888899999


Q ss_pred             EEEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcc-eeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          263 CVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       263 ~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~-lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      ++++.+  .+++..++..+.++++|++.++|+++..|+++......++++ ||.++.||+++++++++++++.|+...++
T Consensus       242 ~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~  321 (534)
T COG0318         242 TLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAIL  321 (534)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceE
Confidence            999997  599999999999999999999999999999998887777776 99999999999999999999999856899


Q ss_pred             cCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      +.||+||+++.++.....+...+.+++|.|+|+++++|+|++++++++ |++|||+++||+++.|  ||++|+.|.+.| 
T Consensus       322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~G--Y~~~pe~t~~~f-  397 (534)
T COG0318         322 EGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKG--YWNRPEATAEAF-  397 (534)
T ss_pred             EeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhh--hcCChHHHHHhh-
Confidence            999999999877776655301467778999999999999976665666 9999999999999999  999999999977 


Q ss_pred             ccccCcceecCCCC
Q 013850          420 CEHTDSFIRGKDQQ  433 (435)
Q Consensus       420 ~~~~~~~~~tgD~~  433 (435)
                        +.+|||+|||++
T Consensus       398 --~~~gW~~TGDlg  409 (534)
T COG0318         398 --DEDGWLRTGDLG  409 (534)
T ss_pred             --ccCCeeeecceE
Confidence              225899999986

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=6.6e-59  Score=469.74  Aligned_cols=418  Identities=20%  Similarity=0.275  Sum_probs=315.4

Q ss_pred             cCccceeecCCCCCCCC--CCCCCchHHHHHhhcccCCCceeeeec-----CCC--cceeHHHHHHHHHHHHHHHHhCCC
Q 013850            6 YGRDGIYRSLRPPLVLP--SDPSFSMVHFLFRNSASYSSKLALIDA-----DSD--ESLSFSQFKSIVIKVSHSFRHLGI   76 (435)
Q Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~~tl~~~l~~~~~~~p~~~a~~~~-----~~~--~~~Ty~el~~~~~~la~~L~~~g~   76 (435)
                      ..+..+++++..+..++  .....|+.++|.++++++|+++|+...     ..+  .++||+||.++++++|++|+++|+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv  101 (666)
T PLN02614         22 PSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGV  101 (666)
T ss_pred             CCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCC
Confidence            34555666554333332  222259999999999999999999742     112  358999999999999999999999


Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC------CCcEEe
Q 013850           77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLL  150 (435)
Q Consensus        77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~  150 (435)
                      ++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|++++....+....      .+.++.
T Consensus       102 ~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~  181 (666)
T PLN02614        102 KDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVS  181 (666)
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999987655443221      122222


Q ss_pred             ccCCccccc-ccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh
Q 013850          151 GSKDKVSSS-GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE  229 (435)
Q Consensus       151 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~  229 (435)
                      ..+...... ..........++++++..... .........++|+++|+|||||||.||||++||+++...+........
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~  260 (666)
T PLN02614        182 FGGVSREQKEEAETFGLVIYAWDEFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLK  260 (666)
T ss_pred             eCCCChHHhhhhhhcCcEEEEHHHHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhcc
Confidence            211000000 000001113456666543321 111223356899999999999999999999999999887655433221


Q ss_pred             ---hccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc--
Q 013850          230 ---LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--  304 (435)
Q Consensus       230 ---~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--  304 (435)
                         .....+|++++.+|++|+++.. ..+.++..|+++++.+ +++..+++.+++++||+++++|+++..|.+.....  
T Consensus       261 ~~~~~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  338 (666)
T PLN02614        261 SANAALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS  338 (666)
T ss_pred             ccccCCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHh
Confidence               1122349999999999999985 4566788999998875 58999999999999999999999999886421100  


Q ss_pred             -----------------------------CC-------------CC-cceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          305 -----------------------------KF-------------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       305 -----------------------------~~-------------~l-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                                                   ..             .+ ++||.+++||+++++++ +++.+.+++++++++
T Consensus       339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~  417 (666)
T PLN02614        339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQG  417 (666)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEee
Confidence                                         00             01 68999999999999875 567777766899999


Q ss_pred             cCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeC-C-CCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-D-TLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~-~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      ||+||+++..+...+.+ ..+.+++|+|+||++++|+|. + .+.++++|+.|||+++||+++.|  ||++|+.|.+.| 
T Consensus       418 YG~TE~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~G--Y~~~pe~T~~~f-  493 (666)
T PLN02614        418 YGLTESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSG--YYKREDLTKEVL-  493 (666)
T ss_pred             CchHhhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccc--ccCCHHHhhhhh-
Confidence            99999886554433322 235789999999999999983 3 34788999999999999999999  999999999987 


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                         .+|||+|||+++
T Consensus       494 ---~dGw~~TGDlg~  505 (666)
T PLN02614        494 ---IDGWLHTGDVGE  505 (666)
T ss_pred             ---ccCCcccceEEE
Confidence               378999999874

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.6e-58  Score=442.21  Aligned_cols=380  Identities=27%  Similarity=0.347  Sum_probs=302.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      .++.+.+.++++.+|+..|+.....+  +.+||+|+.+++.++|++|++.|+.+||+|+|++.|+++|+++.+||+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~   95 (613)
T COG1022          16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGA   95 (613)
T ss_pred             ccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence            67899999999999999899866544  7899999999999999999999997799999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccH-HHHhhcCCCcE-Eecc-------CCcc--cccccccccc-cccchh
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELW-DKVKDLNLPAV-LLGS-------KDKV--SSSGLISRSS-KIVSFH  172 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~-~~~~-------~~~~--~~~~~~~~~~-~~~~~~  172 (435)
                      +.||+.+..+++++.++|+.+++++||++.... +.+........ +...       ....  .......... +...+ 
T Consensus        96 v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (613)
T COG1022          96 VSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-  174 (613)
T ss_pred             eEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence            999999999999999999999999999998443 33332221100 0000       0000  0000000000 00111 


Q ss_pred             hhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH
Q 013850          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (435)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~  252 (435)
                      . .....  .........++|+|.|+|||||||.||||++||+|+++++........ ....+|+.++.+|+.|++...+
T Consensus       175 ~-~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~-~~~~~d~~LsfLPlaHi~Er~~  250 (613)
T COG1022         175 L-IDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP-PIGPGDRVLSFLPLAHIFERAF  250 (613)
T ss_pred             h-hcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC-CCCCCcEEEEeCcHHHHHHHHH
Confidence            0 11110  111225678999999999999999999999999999999998877665 1233499999999999999964


Q ss_pred             HHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc-----------------------------
Q 013850          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-----------------------------  303 (435)
Q Consensus       253 ~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  303 (435)
                      .....+..|+++....  ++..+++.+.+++||++.++|.+|+.+.+....                             
T Consensus       251 ~~~~~~~~g~~~~~~~--~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~  328 (613)
T COG1022         251 EGGLALYGGVTVLFKE--DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALL  328 (613)
T ss_pred             HHHHHhhcceEEEecC--CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhc
Confidence            4555566666665544  889999999999999999999999877553000                             


Q ss_pred             --------------------cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCC
Q 013850          304 --------------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRS  363 (435)
Q Consensus       304 --------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~  363 (435)
                                          .... .++|.+++||+++++++...++..  ++++.++||+||++++++++.+.  ..+.
T Consensus       329 ~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~--~~~~  403 (613)
T COG1022         329 GGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPD--RFVL  403 (613)
T ss_pred             ccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcccc--Cccc
Confidence                                0111 489999999999999999999888  69999999999999999999888  7899


Q ss_pred             CCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          364 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       364 ~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++|+|+|+++++|.|.           |||+||||+||+|  ||++|+.|.++|   +.||||+|||+++
T Consensus       404 gtvG~p~p~~evKI~d~-----------GEilVRG~~Vm~G--Yyk~pe~Taeaf---~~DGWf~TGDlg~  458 (613)
T COG1022         404 GTVGKPLPGIEVKIADD-----------GEILVRGPNVMKG--YYKNPEATAEAF---TEDGWFRTGDLGE  458 (613)
T ss_pred             CCcCCcCCCceEEEccC-----------ceEEEecchhcch--hcCChHHHhhhc---cccCCcccCceeE
Confidence            99999999999999994           9999999999999  999999999999   3599999999864

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=4.7e-57  Score=450.58  Aligned_cols=412  Identities=36%  Similarity=0.596  Sum_probs=333.7

Q ss_pred             cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcC
Q 013850            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP   87 (435)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~   87 (435)
                      ..+++++.+...+|..++.++.+.+.+. +.+|+++|+++...+..+||.||.++++++|+.|++ .|+++||+|+++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~  100 (560)
T PLN02574         22 TGIYSSKHPPVPLPSDPNLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLP  100 (560)
T ss_pred             CeeecCCCCCCCCCCCCCCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence            4566665555566666667777777766 789999999987655689999999999999999998 99999999999999


Q ss_pred             CCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCccccccccccccc
Q 013850           88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK  167 (435)
Q Consensus        88 ~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (435)
                      |++++++++|||+++|++++|++|.++.+++.++++.+++++++++++....+.......+.+.......     .....
T Consensus       101 n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  175 (560)
T PLN02574        101 NSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFD-----SKRIE  175 (560)
T ss_pred             CcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccc-----cCccC
Confidence            9999999999999999999999999999999999999999999999887776655443333222110000     01112


Q ss_pred             ccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhh--hh-ccCCCcEEEecchH
Q 013850          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--EL-VGELDHVVLCVLPM  244 (435)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~-~~~~~d~~l~~~~l  244 (435)
                      ...++++.....  .........++++++|+|||||||.||+|.++|+++...+.......  .. ....+++++..+|+
T Consensus       176 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  253 (560)
T PLN02574        176 FPKFYELIKEDF--DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM  253 (560)
T ss_pred             cccHHHHhhcCC--cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecch
Confidence            234555444332  22233445678999999999999999999999999988765443211  11 11234889999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc-cCCCCcceeEEEecCCCCcH
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-RKFDISSLKLVGSGAAPLGK  323 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~~lr~i~~gG~~l~~  323 (435)
                      +|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.... ...++++||.+++||+++++
T Consensus       254 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~  333 (560)
T PLN02574        254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSG  333 (560)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCH
Confidence            99999977788888999999999999999999999999999999999999999987543 34568899999999999999


Q ss_pred             HHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccc
Q 013850          324 ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP  403 (435)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~  403 (435)
                      ++.+++.+.++++++++.||+||++.+...........+.+++|+++++++++|+|++++++++.|+.|||+++|++++.
T Consensus       334 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~  413 (560)
T PLN02574        334 KFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMK  413 (560)
T ss_pred             HHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhh
Confidence            99999999997799999999999886654332222234678999999999999999889999999999999999999999


Q ss_pred             cccccCCcccccccccccccCcceecCCCC
Q 013850          404 GIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       404 g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      |  ||++++.+.+.|   ..+|||+|||++
T Consensus       414 G--Y~~~~~~t~~~~---~~~g~~~TGDlg  438 (560)
T PLN02574        414 G--YLNNPKATQSTI---DKDGWLRTGDIA  438 (560)
T ss_pred             h--hcCChhHhhhhc---cCCCCcccceEE
Confidence            9  999999998866   357899999976

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.4e-57  Score=432.53  Aligned_cols=367  Identities=25%  Similarity=0.355  Sum_probs=307.6

Q ss_pred             CchHHH-HHhhcc-cCCCceeeeecCCC---cceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013850           27 FSMVHF-LFRNSA-SYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVI  100 (435)
Q Consensus        27 ~tl~~~-l~~~~~-~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~  100 (435)
                      .|+... ++++.. ..+++.|++...+.   +.+||+||.+.++++|+.|++ .|+ +||||++++|+.+|.++++|||+
T Consensus         8 lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365           8 LNLALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             eechhhhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            555444 455553 45789999866322   789999999999999999986 678 99999999999999999999999


Q ss_pred             HcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCc--------EEeccCCcccccccccccccccchh
Q 013850          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA--------VLLGSKDKVSSSGLISRSSKIVSFH  172 (435)
Q Consensus       101 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  172 (435)
                      ++|++.+|+.+.++++.+...+++++++++|+++......+....+.        +++....            . ..|.
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------------~-~~~~  153 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL------------G-LWYD  153 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc------------c-ccHH
Confidence            99999999999999999999999999999999987776555443211        2222110            1 6677


Q ss_pred             hhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH
Q 013850          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (435)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~  252 (435)
                      +..+...  ........+.+|+++|+|||||||+||+|+|+|..++............ ...+|++++..++.|++|.++
T Consensus       154 ~~~~~~~--~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~-~~~~Dv~w~~ad~GW~~g~~~  230 (528)
T COG0365         154 EAVEKAS--EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGD-LLPGDRFWNSSDPGWIYGLWY  230 (528)
T ss_pred             HHhhccC--CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhC-CCCCCEEEeCCCchhhhCchH
Confidence            7776555  4555566899999999999999999999999999887776554432222 225599999999999999998


Q ss_pred             HHHhhhhcCcEEEecCC--C-CHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHH
Q 013850          253 ILYDQLQKGNCVVSMGK--F-DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC  329 (435)
Q Consensus       253 ~~~~~l~~G~~i~~~~~--~-~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~  329 (435)
                      .++.+|..|+++++.+.  + ++..+++.++++++|.+++.|+.++.|.+....+.+++++||.+.+.|||++++.++++
T Consensus       231 ~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~  310 (528)
T COG0365         231 SVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWF  310 (528)
T ss_pred             HHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHH
Confidence            89999999999998853  2 49999999999999999999999999999877667899999999999999999999999


Q ss_pred             HhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC--Cccccccc
Q 013850          330 QKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--NVTPGIVY  407 (435)
Q Consensus       330 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~--~~~~g~~y  407 (435)
                      .+.++ +++.+.||+||+++......+   ..++++.|+|+||+++.|+|. +|+++++|+ |+|+++.+  +++.+  |
T Consensus       311 ~~~~g-~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd-~g~~~~~~~-G~Lvi~~~~p~~~~~--~  382 (528)
T COG0365         311 YSALG-VWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDD-EGNPVPPGV-GELVVRLPWPGMALT--Y  382 (528)
T ss_pred             HHHhC-CCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECC-CCCcCCCCc-eEEEEeCCCchhhhh--h
Confidence            99998 999999999999965555444   234555599999999999995 499999999 99999997  89999  9


Q ss_pred             cCCcccccccc
Q 013850          408 INFFVFTLFLW  418 (435)
Q Consensus       408 ~~~~~~~~~~~  418 (435)
                      |+|++.+.+.+
T Consensus       383 w~d~er~~~~y  393 (528)
T COG0365         383 WNDPERYKEAY  393 (528)
T ss_pred             hCCHHHHHHHH
Confidence            99999988876

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.7e-57  Score=458.41  Aligned_cols=396  Identities=19%  Similarity=0.252  Sum_probs=304.7

Q ss_pred             CchHHHHHhhcccCCCceeeeec-----CCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALIDA-----DSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~-----~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      .|+.++|.+.++++|+++|+...     ..+  +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus        43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  122 (660)
T PLN02861         43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (660)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            68999999999999999999642     112  47999999999999999999999999999999999999999999999


Q ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC------CCcEEeccCCcccc-cccccccccccchh
Q 013850          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSS-SGLISRSSKIVSFH  172 (435)
Q Consensus       100 ~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  172 (435)
                      +++|++++|+++.++.+++.++++.++++++|++++..+.+....      .+.++...+..... ...........+|+
T Consensus       123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
T PLN02861        123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWE  202 (660)
T ss_pred             HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHH
Confidence            999999999999999999999999999999999877655543321      22233222110000 00000111234566


Q ss_pred             hhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc---cCCCcEEEecchHHHHHH
Q 013850          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV---GELDHVVLCVLPMFHVFG  249 (435)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~---~~~~d~~l~~~~l~~~~g  249 (435)
                      ++.....  .........++++++|+|||||||.||||++||++++..+..........   ...+|++++.+|++|+++
T Consensus       203 ~~~~~~~--~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~  280 (660)
T PLN02861        203 EFSLMGS--LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD  280 (660)
T ss_pred             HHHHhCc--ccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence            6654332  11222345689999999999999999999999999988765543322211   123499999999999999


Q ss_pred             HHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcc----------------------------
Q 013850          250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS----------------------------  301 (435)
Q Consensus       250 ~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----------------------------  301 (435)
                      .. ..+.++..|+++++.. +++..+++.|+++++|+++++|+++..|.+..                            
T Consensus       281 ~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~  358 (660)
T PLN02861        281 QV-IETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK  358 (660)
T ss_pred             HH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence            86 4556899999998874 68999999999999999999999999886410                            


Q ss_pred             ---------cccCC-------CC-cceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCC
Q 013850          302 ---------LVRKF-------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSG  364 (435)
Q Consensus       302 ---------~~~~~-------~l-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  364 (435)
                               .....       .+ .+||.+++||+++++++. +|.+.++...++++||+||+++.++...... ..+.+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~g  436 (660)
T PLN02861        359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIANV-FSMVG  436 (660)
T ss_pred             CCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeeccccc-CCCCC
Confidence                     00000       11 579999999999999975 5666666457999999999887655433321 33578


Q ss_pred             CcccccCCcEEEEEe-CCCC-ccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          365 SAGTLVAGVEAQIVS-VDTL-KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       365 ~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++|+|+++++++|+| +++| ..+.+++.|||+++||+++.|  ||++|+.|.+.|    .+|||+|||+++
T Consensus       437 svG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~G--Y~~~pe~T~~~f----~dGw~~TGDlg~  502 (660)
T PLN02861        437 TVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG--YHKRQDLTEEVL----IDGWFHTGDIGE  502 (660)
T ss_pred             CccCccCceEEEEEEccccCcccCCCCCceeEEEcCCccccc--ccCCHHHHHhhh----hccCcccCceEE
Confidence            999999999999998 3444 344566789999999999999  999999999988    378999999874

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=5.4e-57  Score=427.66  Aligned_cols=401  Identities=24%  Similarity=0.284  Sum_probs=325.9

Q ss_pred             CCCCchHHHHHhhcccCCCceeeeecC----CC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHH
Q 013850           24 DPSFSMVHFLFRNSASYSSKLALIDAD----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (435)
Q Consensus        24 ~~~~tl~~~l~~~~~~~p~~~a~~~~~----~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~l   97 (435)
                      ....|+.+.|.+.+..+|+.+++-...    .+  +++||+|..+++.+++..|+++|+++++.|+|+.-|++||+++.+
T Consensus        72 ~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~  151 (691)
T KOG1256|consen   72 DGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEM  151 (691)
T ss_pred             CCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHH
Confidence            445899999999999999999996543    12  789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEc-cccHHHHhhcC-------CCcEEeccCC-cccccccccccccc
Q 013850           98 GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV-PELWDKVKDLN-------LPAVLLGSKD-KVSSSGLISRSSKI  168 (435)
Q Consensus        98 A~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~-~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~  168 (435)
                      ||...|.+.||+-..++++.+.++++.+...++||| +..++.+.+..       .+.+++.... +............+
T Consensus       152 a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v  231 (691)
T KOG1256|consen  152 ACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEV  231 (691)
T ss_pred             HHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEE
Confidence            999999999999999999999999999999999999 55555554422       3333333332 11122223334568


Q ss_pred             cchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh--c-cC-CCcEEEecchH
Q 013850          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--V-GE-LDHVVLCVLPM  244 (435)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~-~~-~~d~~l~~~~l  244 (435)
                      .+|+++++.+......+.....|+|.+.|.|||||||.||||++||+|+...+.........  . .. ..|++++++|+
T Consensus       232 ~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPL  311 (691)
T KOG1256|consen  232 YSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPL  311 (691)
T ss_pred             EEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcH
Confidence            99999999886422222258899999999999999999999999999999965532222111  1 12 23999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcc-----------------------
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS-----------------------  301 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~-----------------------  301 (435)
                      .|++... .-+..++.|+++.+.. -|+..+.+.|++.+||.+.++|.+|.++.+..                       
T Consensus       312 AHi~er~-~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~  389 (691)
T KOG1256|consen  312 AHIFERV-VELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKL  389 (691)
T ss_pred             HHHHHHH-HHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            9999996 4455568999999997 48899999999999999999999988775530                       


Q ss_pred             ---cccCCC-------------------CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCC
Q 013850          302 ---LVRKFD-------------------ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG  359 (435)
Q Consensus       302 ---~~~~~~-------------------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  359 (435)
                         ..++..                   -..+|.+++|++|+++++.+.++..++ ++++++||+||+++......+.  
T Consensus       390 ~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGYGlTEts~g~~~~~~~--  466 (691)
T KOG1256|consen  390 EHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGYGLTETSAGTTLTLPG--  466 (691)
T ss_pred             HHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecccccccCCceEeccCC--
Confidence               001100                   147899999999999999999999997 9999999999999666666555  


Q ss_pred             CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          360 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       360 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +...+++|.|+|+++++++|+..-.--+.+..||||+||++||.|  ||++|+.|.+.+   +.|||++|||+|+
T Consensus       467 d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~G--YyK~p~~T~e~i---deDGWLhTGDiG~  536 (691)
T KOG1256|consen  467 DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMG--YYKDPEKTAEAI---DEDGWLHTGDIGE  536 (691)
T ss_pred             CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhcee--ccCChHHHhhhh---cccccccccccee
Confidence            338899999999999999996555555556689999999999999  999999999988   5789999999885

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.4e-56  Score=453.79  Aligned_cols=395  Identities=21%  Similarity=0.252  Sum_probs=312.4

Q ss_pred             CchHHHHHhhcccCCCceeeee---cCC--C--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALID---ADS--D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~---~~~--~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      .|+.++|.++++++|+++|+..   .+.  +  +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus        44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  123 (651)
T PLN02736         44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC  123 (651)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            6899999999999999999942   221  1  46999999999999999999999999999999999999999999999


Q ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCccccc-ccccccccccchhh
Q 013850          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSS-GLISRSSKIVSFHD  173 (435)
Q Consensus       100 ~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  173 (435)
                      +++|++++|+++.++.+++.++++.++++++|++.+..+.+....     .+.+++......... ...........+++
T Consensus       124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  203 (651)
T PLN02736        124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK  203 (651)
T ss_pred             HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence            999999999999999999999999999999999987766554422     122222211000000 00001122456666


Q ss_pred             hhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHH
Q 013850          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (435)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~  253 (435)
                      +++.... .........++++++|+|||||||.||||++||+++...+........+.  .+|++++.+|++|.+++. .
T Consensus       204 ~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~--~~d~~l~~lPl~h~~~~~-~  279 (651)
T PLN02736        204 LLAQGRS-SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFY--PSDVHISYLPLAHIYERV-N  279 (651)
T ss_pred             HHHhccc-CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCC--CCCEEEEeCCHHHHHHHH-H
Confidence            6654321 11122345789999999999999999999999999998877665544443  349999999999999996 6


Q ss_pred             HHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc----------------------------cC
Q 013850          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV----------------------------RK  305 (435)
Q Consensus       254 ~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----------------------------~~  305 (435)
                      ++.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....                            ..
T Consensus       280 ~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (651)
T PLN02736        280 QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNP  358 (651)
T ss_pred             HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            7888999999988764 788999999999999999999999887653110                            00


Q ss_pred             -------------CCC-cceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccC
Q 013850          306 -------------FDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA  371 (435)
Q Consensus       306 -------------~~l-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~  371 (435)
                                   ..+ ++||.+++||+++++++.+++++.++ .++++.||+||+++.++.....  ..+.+++|+|+|
T Consensus       359 ~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p  435 (651)
T PLN02736        359 SPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTETSCVISGMDEG--DNLSGHVGSPNP  435 (651)
T ss_pred             CchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHhchheeccCCC--CCCCCccCCccC
Confidence                         001 48999999999999999999999886 8999999999998776655443  456789999999


Q ss_pred             CcEEEEEeCCCCc---cCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          372 GVEAQIVSVDTLK---PLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       372 ~~~~~i~d~~~~~---~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |++++|+|.+++.   ...+++.|||+++||+++.|  ||++++.|.+.|   ..+|||+|||+++
T Consensus       436 g~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~G--Y~~~~~~t~~~~---~~dgw~~TGDlg~  496 (651)
T PLN02736        436 ACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKG--YYKDEVQTREVI---DEDGWLHTGDIGL  496 (651)
T ss_pred             ceEEEEEEccccCcccCCCCCCCceEEecCCccccc--cccCHHHHHhhh---ccCCCeeccceEE
Confidence            9999999854432   22344579999999999999  999999998877   3578999999874

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.2e-55  Score=439.01  Aligned_cols=408  Identities=36%  Similarity=0.583  Sum_probs=336.2

Q ss_pred             cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 013850            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN   88 (435)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~   88 (435)
                      -.++++-.+....|..  .|+.+++.++++++|+++|+++.+.++.+||.||.++++++|+.|++.|+++||+|+++++|
T Consensus         7 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~   84 (537)
T PLN02246          7 EFIFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPN   84 (537)
T ss_pred             eeEecCCCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            3567777777777766  89999999999999999999987556789999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC--CcEEeccCCcccccccccccc
Q 013850           89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus        89 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +++++++++||+++|++++|+++.++.+++..+++.++++++|+++...+.+.....  ...++..+.         ...
T Consensus        85 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~  155 (537)
T PLN02246         85 CPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDD---------PPE  155 (537)
T ss_pred             ChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCC---------CCC
Confidence            999999999999999999999999999999999999999999999887766544321  112222111         111


Q ss_pred             cccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhh--hhccCCCcEEEecchH
Q 013850          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPM  244 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~d~~l~~~~l  244 (435)
                      ....+.++.....  ...+.....++++++++|||||||.||+|.++|+++...........  .+....+|++++.+|+
T Consensus       156 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  233 (537)
T PLN02246        156 GCLHFSELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM  233 (537)
T ss_pred             CceeHHHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeech
Confidence            2233444433222  22233445789999999999999999999999999987755432211  1222334999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHH
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE  324 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~  324 (435)
                      +|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.+++||++++++
T Consensus       234 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~  313 (537)
T PLN02246        234 FHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKE  313 (537)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHH
Confidence            99999876788899999999999999999999999999999999999999999987766666788999999999999999


Q ss_pred             HHHHHHhhCCCCeeecCcCcccccccccccCC---CCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCc
Q 013850          325 LMEDCQKNIPGATIFQGYGMTETCAPISLENP---LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV  401 (435)
Q Consensus       325 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~  401 (435)
                      +.+.+++.++++.+++.||+||++.+++....   .....+++++|+|+++++++|+|++++++++.|+.|||+++|+.+
T Consensus       314 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~  393 (537)
T PLN02246        314 LEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQI  393 (537)
T ss_pred             HHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCch
Confidence            99999999988999999999998876543211   111345678999999999999998889999999999999999999


Q ss_pred             cccccccCCcccccccccccccCcceecCCCCC
Q 013850          402 TPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       402 ~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.|  ||++++.+.+.+   ..++||+|||+++
T Consensus       394 ~~G--Y~~~~~~~~~~~---~~~~~~~TGD~~~  421 (537)
T PLN02246        394 MKG--YLNDPEATANTI---DKDGWLHTGDIGY  421 (537)
T ss_pred             hcc--ccCCchhhhhcc---cCCCCeeecceEE
Confidence            999  999999988765   3578999999763

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.3e-56  Score=440.93  Aligned_cols=386  Identities=20%  Similarity=0.249  Sum_probs=312.2

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|.+.++++|+++|+++.. ...+||+||.++++++|+.|.+   .+||+|+|+++|++++++++|||+++|+++
T Consensus        19 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~   94 (539)
T PRK06334         19 KTVLESFLKLCSEMTTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIP   94 (539)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCee
Confidence            679999999999999999998763 3689999999999999999987   489999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC------CcEEeccCCcccccccccccccccchhhhhhhc--
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS--  178 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  178 (435)
                      +|+++.++.+++.++++.+++++++++.+....+.....      ..++...+.          . ....+.+.....  
T Consensus        95 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~-~~~~~~~~~~~~~~  163 (539)
T PRK06334         95 VMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEV----------R-KELSFWEKCRIGIY  163 (539)
T ss_pred             EecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehh----------h-hhccHHHhhhhhhh
Confidence            999999999999999999999999999877665543321      111111110          0 000011100000  


Q ss_pred             --CCC----CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH
Q 013850          179 --GSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (435)
Q Consensus       179 --~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~  252 (435)
                        ...    .........++++++|+|||||||.||+|.++|+++.............  ..+|++++.+|++|.+++..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~  241 (539)
T PRK06334        164 MSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSP--KEDDVMMSFLPPFHAYGFNS  241 (539)
T ss_pred             hcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC--CCCceEEEecchHhhhhhHH
Confidence              000    0011234578999999999999999999999999998876554443333  33499999999999999976


Q ss_pred             HHHhhhhcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHh
Q 013850          253 ILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK  331 (435)
Q Consensus       253 ~~~~~l~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~  331 (435)
                      .++.++..|+++++.. .+++..+++.|+++++|++.++|+++..|++........+++||.+++||+++++++.+++++
T Consensus       242 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  321 (539)
T PRK06334        242 CTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALK  321 (539)
T ss_pred             HHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHH
Confidence            6888999999998875 579999999999999999999999999999876666677899999999999999999999999


Q ss_pred             hCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCc
Q 013850          332 NIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF  411 (435)
Q Consensus       332 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~  411 (435)
                      .++++.+++.||+||++.++....... ....+++|+|++|++++|+|++++.++++|+.|||+++|++++.|  ||+++
T Consensus       322 ~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~G--Y~~~~  398 (539)
T PRK06334        322 TFPHIQLRQGYGTTECSPVITINTVNS-PKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSG--YLGED  398 (539)
T ss_pred             HCCCCeEEecccccccCceEEeccCCC-CCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCccccc--ccCCc
Confidence            998799999999999987666543322 334568999999999999997789999999999999999999999  99999


Q ss_pred             ccccccccccccCcceecCCCCC
Q 013850          412 VFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       412 ~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.+...  ..+.++||+|||+++
T Consensus       399 ~~~~~~--~~~~~~w~~TGD~g~  419 (539)
T PRK06334        399 FGQGFV--ELGGETWYVTGDLGY  419 (539)
T ss_pred             ccccce--eeCCceeEECCCEEE
Confidence            865432  123467999999863

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9.8e-55  Score=433.03  Aligned_cols=411  Identities=31%  Similarity=0.507  Sum_probs=334.4

Q ss_pred             CccceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 013850            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (435)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~   86 (435)
                      ++..+++++.++...|..  .|+.+.|.+.++.+|+++|+++...++.+||.||.+++.++|+.|++.|+++||+|++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~   87 (546)
T PLN02330         10 DNEHIFRSRYPSVPVPDK--LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVL   87 (546)
T ss_pred             ccceeeccCCCCCCCCCC--CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            444677777777655554  899999999999999999999765468999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccc
Q 013850           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus        87 ~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +|+++++++++||+++|++++|+++..+.+++..+++.++++++++++...+.+.......+.+...          ...
T Consensus        88 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~----------~~~  157 (546)
T PLN02330         88 PNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEE----------KIE  157 (546)
T ss_pred             CCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCC----------CCC
Confidence            9999999999999999999999999999999999999999999999998887776654443333211          111


Q ss_pred             cccchhhhhhhcCCC-CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHH
Q 013850          167 KIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~  245 (435)
                      ....+.++++..... .........++++++|+|||||||.||+|.++|+++...+..............++.+..+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  237 (546)
T PLN02330        158 GAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFF  237 (546)
T ss_pred             CcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChH
Confidence            233455555433211 1112334567899999999999999999999999998765432211111111226899999999


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCc--ceeEEEecCCCCcH
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS--SLKLVGSGAAPLGK  323 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gG~~l~~  323 (435)
                      |.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++.  ++|.+++||+++++
T Consensus       238 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~  317 (546)
T PLN02330        238 HIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAP  317 (546)
T ss_pred             HHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCH
Confidence            9999876788999999999999999999999999999999999999999999987655444454  47899999999999


Q ss_pred             HHHHHHHhhCCCCeeecCcCcccccccccccC-CCC--CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCC
Q 013850          324 ELMEDCQKNIPGATIFQGYGMTETCAPISLEN-PLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN  400 (435)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~-~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~  400 (435)
                      ++.+++.+.|+++++++.||+||++.+..... +..  ...+.+++|.|+++++++|+|++++++++.|+.|||+++|+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~  397 (546)
T PLN02330        318 ELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQC  397 (546)
T ss_pred             HHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecch
Confidence            99999999997799999999999876543221 111  123456899999999999999888999999999999999999


Q ss_pred             ccccccccCCcccccccccccccCcceecCCCCC
Q 013850          401 VTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       401 ~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++.|  |+++++.+.+.+   +.++||+|||+++
T Consensus       398 ~~~g--y~~~~~~~~~~~---~~~g~~~TGD~~~  426 (546)
T PLN02330        398 VMQG--YYNNKEETDRTI---DEDGWLHTGDIGY  426 (546)
T ss_pred             hhhh--hccCccchhhhc---cCCCceecccEEE
Confidence            9999  999999988765   4578999999864

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.1e-55  Score=446.31  Aligned_cols=399  Identities=22%  Similarity=0.258  Sum_probs=303.5

Q ss_pred             CchHHHHHhhcccCCCceeeeec----------CCC-----------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDA----------DSD-----------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF   85 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~   85 (435)
                      .|+.++|.+.++.+|+++|+...          .++           .++||+||.++++++|+.|.++|+++||+|+|+
T Consensus        58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~  137 (696)
T PLN02387         58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF  137 (696)
T ss_pred             CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            79999999999999999999431          012           248999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccc
Q 013850           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG  160 (435)
Q Consensus        86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  160 (435)
                      ++|++||++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....     .+.++...+.......
T Consensus       138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (696)
T PLN02387        138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS  217 (696)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence            99999999999999999999999999999999999999999999999987766654432     2223322221100000


Q ss_pred             c--ccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEE
Q 013850          161 L--ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (435)
Q Consensus       161 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~  238 (435)
                      .  ........+|+++...+.. .........++|+++|+|||||||.||||++||+++...+........ ....+|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~-~~~~~d~~  295 (696)
T PLN02387        218 SLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVP-KLGKNDVY  295 (696)
T ss_pred             hhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcC-CCCCCCEE
Confidence            0  0011123456666554331 112223456899999999999999999999999999987665443221 12234999


Q ss_pred             EecchHHHHHHHHHHHHhhhhcCcEEEecCCCC--------HHHHHHHHHhcCceEEEecHHHHHHHHhccccc------
Q 013850          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD--------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR------  304 (435)
Q Consensus       239 l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~--------~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~------  304 (435)
                      ++++|++|++++. ..+.++..|+++.+.....        +..+++.++++++|++.++|.++..|.+.....      
T Consensus       296 l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~  374 (696)
T PLN02387        296 LAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGG  374 (696)
T ss_pred             EEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccH
Confidence            9999999999985 4455677788777654321        234567899999999999999999887532100      


Q ss_pred             ------------------C---------C-------------CC-cceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          305 ------------------K---------F-------------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       305 ------------------~---------~-------------~l-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                                        .         .             .+ +++|.+++||+++++++.+.++..++ ++++++||
T Consensus       375 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-~~v~~~YG  453 (696)
T PLN02387        375 LAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-APIGQGYG  453 (696)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-CCeeEeec
Confidence                              0         0             01 58999999999999999988888886 99999999


Q ss_pred             cccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCC-CccC--CCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850          344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPL--PPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  420 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~--~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~  420 (435)
                      +||+++.++.....  ....+++|.|+|+++++|+|+++ +..+  .+++.|||+++||+++.|  ||++|+.|.+.|. 
T Consensus       454 ~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~G--Y~~~pe~T~~~f~-  528 (696)
T PLN02387        454 LTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLG--YFKNQEKTDEVYK-  528 (696)
T ss_pred             hhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccch--hcCCHHHHhhhhc-
Confidence            99998776665443  44678999999999999999433 4333  345679999999999999  9999999999871 


Q ss_pred             cccC--cceecCCCCC
Q 013850          421 EHTD--SFIRGKDQQT  434 (435)
Q Consensus       421 ~~~~--~~~~tgD~~~  434 (435)
                      .+.+  +||+|||+++
T Consensus       529 ~d~~G~~W~~TGDig~  544 (696)
T PLN02387        529 VDERGMRWFYTGDIGQ  544 (696)
T ss_pred             cccCCCceeecCceEE
Confidence            1223  4999999874

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.7e-56  Score=431.74  Aligned_cols=381  Identities=34%  Similarity=0.517  Sum_probs=302.8

Q ss_pred             HHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC
Q 013850           33 LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV  112 (435)
Q Consensus        33 l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~  112 (435)
                      |+++++++|+++|+++ +.++++||+||.++++++|..|+++|+++||+|+++++|+++++++++||+++|++++|++|.
T Consensus         1 f~~~a~~~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~   79 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS   79 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred             ChhHHhhCCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence            5789999999999999 446999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCeEEEE----ccccHHHHhhcC----CCcEEeccCCcccccccccccccccchhhhhhhcCCCCCC
Q 013850          113 YTVSELSKQVKDSNPKLVIT----VPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (435)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (435)
                      ++.+++.++++.++++++|+    +......+....    ....++..+.           ......+.+.....  ...
T Consensus        80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~  146 (417)
T PF00501_consen   80 LSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDR-----------DDLPKKEALKSASL--SDE  146 (417)
T ss_dssp             SSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESH-----------SSCTTCHHHHHHHH--CHC
T ss_pred             cccccccccccccceeEEEEeccccccccccchhhhcccccccccccccc-----------cccccccccccccc--ccc
Confidence            99999999999999999997    222222222221    1111111110           00001111111100  000


Q ss_pred             CCCC-CCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          185 PDVS-VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       185 ~~~~-~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                      .... ..++++++++|||||||.||+|.++|+++++.+..+.... ..... |++++.+|++|.+|+...++.++..|++
T Consensus       147 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~-~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~  224 (417)
T PF00501_consen  147 PQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPE-YFGLG-DRILSFLPLSHIFGLISALLAALFSGAT  224 (417)
T ss_dssp             SHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHH-TTTTT-TEEEESS-TTSHHHHHHHHHHHHHCTSE
T ss_pred             cccCCCCccceeEeecccccccccccccccccccccccccccccc-ccccC-ceEEeecccccccccccccccccccccc
Confidence            0000 0679999999999999999999999999999877754111 11111 6999999999999996799999999999


Q ss_pred             EEecCCCC---HHHHHHHHHhcCceEEEecHHHHHHHHhccccc----CCCCcceeEEEecCCCCcHHHHHHHHhhCCCC
Q 013850          264 VVSMGKFD---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR----KFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (435)
Q Consensus       264 i~~~~~~~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~----~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~  336 (435)
                      +++.+...   +..+++.++++++|++.++|+++..|++....+    ..++++||.++++|+++++++.+++++.++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~  304 (417)
T PF00501_consen  225 LVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNA  304 (417)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTS
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccc
Confidence            99998654   477899999999999999999999999843222    35788999999999999999999999999845


Q ss_pred             eeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccc
Q 013850          337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF  416 (435)
Q Consensus       337 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~  416 (435)
                      ++++.||+||++.++..........+.+++|.|+++++++|+|+++++++++|+.|||+++||.++.|  |+++++.+.+
T Consensus       305 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~g--y~~~~~~~~~  382 (417)
T PF00501_consen  305 PIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSG--YYNDPELTAE  382 (417)
T ss_dssp             EEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSE--ETTBHHHHHH
T ss_pred             cceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCcccee--eecccccccc
Confidence            99999999999998875532222457789999999999999998779999999999999999999999  9999999999


Q ss_pred             cccccccCcceecCCCCC
Q 013850          417 LWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       417 ~~~~~~~~~~~~tgD~~~  434 (435)
                      .|.   .+|||+|||+++
T Consensus       383 ~~~---~~~~~~TGD~g~  397 (417)
T PF00501_consen  383 AFI---DDGWYRTGDLGR  397 (417)
T ss_dssp             HEE---TTSEEEEEEEEE
T ss_pred             ccc---cccceecceEEE
Confidence            873   357999999874

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=5.5e-55  Score=442.02  Aligned_cols=400  Identities=22%  Similarity=0.278  Sum_probs=308.1

Q ss_pred             CchHH-HHHhhcc-cCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013850           27 FSMVH-FLFRNSA-SYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI  100 (435)
Q Consensus        27 ~tl~~-~l~~~~~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~  100 (435)
                      .|+.. +|.++++ .+|+++|++...    ..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus        87 ~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~  166 (666)
T PLN02654         87 TNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACA  166 (666)
T ss_pred             eeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            66754 4455654 589999998632    13689999999999999999999999999999999999999999999999


Q ss_pred             HcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC------------------CCcEEeccCCccc-cccc
Q 013850          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------------------LPAVLLGSKDKVS-SSGL  161 (435)
Q Consensus       101 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~  161 (435)
                      ++|++++|+++.++.+++..+++.++++++|+++......+...                  ....+........ ....
T Consensus       167 ~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (666)
T PLN02654        167 RIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDT  246 (666)
T ss_pred             HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccc
Confidence            99999999999999999999999999999999876432211100                  0011111110000 0000


Q ss_pred             ccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHH-HHHhhhhhccCCCcEEEe
Q 013850          162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLC  240 (435)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~d~~l~  240 (435)
                      .........|+++....+  .........++++++|+|||||||.||||+++|.+++.... .......+  ..+|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~--~~~d~~~~  322 (666)
T PLN02654        247 KWQEGRDVWWQDVVPNYP--TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDY--KPTDVYWC  322 (666)
T ss_pred             ccccCCcccHHHHhhcCC--CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCC--CCCcEEEE
Confidence            000001122444432211  12223345789999999999999999999999999865432 22222333  33499999


Q ss_pred             cchHHHHHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEE
Q 013850          241 VLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLV  314 (435)
Q Consensus       241 ~~~l~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i  314 (435)
                      ..|++|+++..+.++.+|..|+++++.++    +++..+++.|+++++|++.++|+++..|.+...  ....++++||.+
T Consensus       323 ~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i  402 (666)
T PLN02654        323 TADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVL  402 (666)
T ss_pred             cCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEE
Confidence            99999999987778999999999999863    479999999999999999999999999998653  234578899999


Q ss_pred             EecCCCCcHHHHHHHHhhCCC--CeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCce
Q 013850          315 GSGAAPLGKELMEDCQKNIPG--ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  392 (435)
Q Consensus       315 ~~gG~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G  392 (435)
                      +++|+++++++.+++.+.++.  +++.+.||+||+++......+.....+++++|.|++|++++|+| ++|+.++.++.|
T Consensus       403 ~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~G  481 (666)
T PLN02654        403 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSG  481 (666)
T ss_pred             EEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCce
Confidence            999999999999999999974  68999999999987665544332245678999999999999999 588999989999


Q ss_pred             eEEEeC--CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          393 EIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       393 ei~v~g--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ||++++  |+++.|  ||++++.+...+ |-..+|||+|||+++
T Consensus       482 el~v~~~~p~~~~g--y~~~~~~~~~~~-~~~~~g~~~TGD~~~  522 (666)
T PLN02654        482 YLCVKKSWPGAFRT--LYGDHERYETTY-FKPFAGYYFSGDGCS  522 (666)
T ss_pred             EEEEcCCCchhhhh--hcCChHHHHHhh-hhcCCCEEEeCceEE
Confidence            999999  789999  999999887654 222367999999863

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6.6e-55  Score=435.43  Aligned_cols=393  Identities=25%  Similarity=0.292  Sum_probs=308.6

Q ss_pred             CCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           22 PSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        22 ~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      |+..+.|+.++|.+.++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~   79 (563)
T PLN02860          2 ANHSQAHICQCLTRLATLRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVAC   79 (563)
T ss_pred             cchhhhHHHHHHHHHHHhcCCceEEecC--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhh
Confidence            4455589999999999999999999876  47999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhc-----C-CCcEEeccCCcccccccccccccccchhhhh
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (435)
                      +|++++|+++.++.+++..+++.+++++++++++........     . ....++..+... ..  ..........+++.
T Consensus        80 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~  156 (563)
T PLN02860         80 AGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSS-SV--FIFLNSFLTTEMLK  156 (563)
T ss_pred             ccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccc-cc--ccchhhccccchhc
Confidence            999999999999999999999999999999987653322221     1 111121111000 00  00000111111111


Q ss_pred             hhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHH
Q 013850          176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY  255 (435)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~  255 (435)
                      ..... .........++++++|+|||||||.||+|.++|+++..+.........+.  .+|+++...|++|.+++. .++
T Consensus       157 ~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~-~~~  232 (563)
T PLN02860        157 QRALG-TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLS-SAL  232 (563)
T ss_pred             cCccc-cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCC--CCCEEEEecCchhhccHH-HHH
Confidence            11000 11112234678999999999999999999999999987655544333332  339999999999999985 788


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc--CCCCcceeEEEecCCCCcHHHHHHHHhhC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  333 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|++.....  ...+++||.+++||+++++++.++|++.|
T Consensus       233 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~  312 (563)
T PLN02860        233 AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLF  312 (563)
T ss_pred             HHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998765332  34678999999999999999999999999


Q ss_pred             CCCeeecCcCcccccccccccCCCCC---------------------CcCCCCcccccCCcEEEEEeCCCCccCCCCCce
Q 013850          334 PGATIFQGYGMTETCAPISLENPLVG---------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  392 (435)
Q Consensus       334 ~~~~~~~~yG~tE~~~~~~~~~~~~~---------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G  392 (435)
                      ++.++++.||+||+++.+......+.                     .....++|+|+++++++|++++      +|+.|
T Consensus       313 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~G  386 (563)
T PLN02860        313 PNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVG  386 (563)
T ss_pred             CCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCcee
Confidence            87999999999998865543221110                     1112378999999999999853      68899


Q ss_pred             eEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          393 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       393 ei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ||+++|++++.|  ||++++.+.+.+   ..+|||+|||+++
T Consensus       387 el~v~g~~~~~G--Y~~~~~~t~~~~---~~~g~~~TGDl~~  423 (563)
T PLN02860        387 RILTRGPHVMLG--YWGQNSETASVL---SNDGWLDTGDIGW  423 (563)
T ss_pred             EEEEecCccccc--ccCCccccchhc---cCCCeEEccceEE
Confidence            999999999999  999999998866   3578999999764

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-54  Score=432.91  Aligned_cols=382  Identities=21%  Similarity=0.257  Sum_probs=315.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.  ++.+||+||.+.++++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  126 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE--RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARI  126 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            37999999999999999999987  4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC---CcEEeccCCcccccccccccccccchhhhhhhcCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (435)
                      +|+++.++.+++..+++.++++++|++++..+.+.....   ....+.......    ......+..++++.....  . 
T Consensus       127 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~-  199 (549)
T PRK07788        127 ILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDD----EPSGSTDETLDDLIAGSS--T-  199 (549)
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCcc----ccCCcCcccHHHHhcCCC--C-
Confidence            999999999999999999999999999887776654321   111111100000    011134456666654322  1 


Q ss_pred             CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                       .+....+++.++++|||||||.||+|.++|+++............+.  .+++++...|++|.+|+. .++.++..|++
T Consensus       200 -~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~  275 (549)
T PRK07788        200 -APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFR--AGETTLLPAPMFHATGWA-HLTLAMALGST  275 (549)
T ss_pred             -CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCC--cCCeEEEccchHHHHHHH-HHHHHHHhCCE
Confidence             11223456789999999999999999999999988766655444443  338999999999999995 67788999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       264 i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      +++...+++..+++.++++++|++.++|+++..|++....  ...++++||.+++||+++++++.+++++.++ .++++.
T Consensus       276 ~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~  354 (549)
T PRK07788        276 VVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLYNL  354 (549)
T ss_pred             EEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC-ccceec
Confidence            9999889999999999999999999999999999987654  4557889999999999999999999999997 899999


Q ss_pred             cCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      ||+||++...... ..+....++++|+|+++++++|+| +++++++.|+.|||+++|+.++.|  |+++++.  ..    
T Consensus       355 YG~TE~~~~~~~~-~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~g--Y~~~~~~--~~----  424 (549)
T PRK07788        355 YGSTEVAFATIAT-PEDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEG--YTDGRDK--QI----  424 (549)
T ss_pred             cCcchhchhhccC-hhhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCcccc--ccCCCcc--cc----
Confidence            9999987654432 222234568999999999999999 589999999999999999999999  9998876  21    


Q ss_pred             ccCcceecCCCC
Q 013850          422 HTDSFIRGKDQQ  433 (435)
Q Consensus       422 ~~~~~~~tgD~~  433 (435)
                       .+|||+|||++
T Consensus       425 -~~g~~~TGDl~  435 (549)
T PRK07788        425 -IDGLLSSGDVG  435 (549)
T ss_pred             -cCCceecCceE
Confidence             26788888876

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.2e-54  Score=437.25  Aligned_cols=386  Identities=22%  Similarity=0.296  Sum_probs=303.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecC-C--CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD-S--DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~-~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .|+.++|.++++++|+++|+++.+ .  .+.+||+||.++++++|+.|.+.|+++||+|+++++|+++|++++|||+++|
T Consensus        39 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G  118 (614)
T PRK08180         39 RRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAG  118 (614)
T ss_pred             ccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcC
Confidence            579999999999999999998652 1  2689999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCC-----HHHHHHHHHhcCCeEEEEccc--cHHHHhhcCC-CcEEeccCCcccccccccccccccchhhhh
Q 013850          104 AIASTANPVYT-----VSELSKQVKDSNPKLVITVPE--LWDKVKDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (435)
Q Consensus       104 ~~~v~i~~~~~-----~~~~~~~l~~~~~~~vi~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (435)
                      ++++|+++.++     .+++.++++.++++++|+++.  ....+..... ...++..+..       ........++++.
T Consensus       119 av~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~  191 (614)
T PRK08180        119 VPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGA-------VPGRAATPFAALL  191 (614)
T ss_pred             CeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCC-------CCCcccccHHHHh
Confidence            99999999998     789999999999999999864  2222222111 1111111100       0011124455555


Q ss_pred             hhcCCCC-CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHH
Q 013850          176 ELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL  254 (435)
Q Consensus       176 ~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~  254 (435)
                      ....... ........++++++|+|||||||.||+|.+||+++.................++++++.+|++|.+++...+
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~  271 (614)
T PRK08180        192 ATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL  271 (614)
T ss_pred             ccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHH
Confidence            4322100 111224567999999999999999999999999998887665444443222348999999999999987778


Q ss_pred             HhhhhcCcEEEecCC-CC---HHHHHHHHHhcCceEEEecHHHHHHHHhcccc----cCCCCcceeEEEecCCCCcHHHH
Q 013850          255 YDQLQKGNCVVSMGK-FD---IEMALRAIEKYRVTVWWVVPPIILALAKNSLV----RKFDISSLKLVGSGAAPLGKELM  326 (435)
Q Consensus       255 ~~~l~~G~~i~~~~~-~~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~lr~i~~gG~~l~~~~~  326 (435)
                      +.++..|+++++.+. ++   ...+++.++++++|+++++|+++..|++....    ....+++||.+++||+++++++.
T Consensus       272 ~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~  351 (614)
T PRK08180        272 GIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW  351 (614)
T ss_pred             HHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHH
Confidence            899999999998753 33   35778899999999999999999999875322    23457899999999999999999


Q ss_pred             HHHHhh----CC-CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCc
Q 013850          327 EDCQKN----IP-GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV  401 (435)
Q Consensus       327 ~~~~~~----~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~  401 (435)
                      +++++.    ++ +.++++.||+||++++++.....  ..+++++|+|++|++++|+|+        +..|||+++|+++
T Consensus       352 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v  421 (614)
T PRK08180        352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNV  421 (614)
T ss_pred             HHHHHHHHhhcCCCceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEecC--------CCCcEEEEecCcc
Confidence            999875    33 37899999999998766654333  346789999999999999884        3459999999999


Q ss_pred             cccccccCCcccccccccccccCcceecCCCCC
Q 013850          402 TPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       402 ~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.|  ||++|+.|.+.|   +.+|||+|||+++
T Consensus       422 ~~G--Y~~~p~~t~~~~---~~dgw~~TGDlg~  449 (614)
T PRK08180        422 TPG--YWRAPELTAEAF---DEEGYYRSGDAVR  449 (614)
T ss_pred             chh--hcCChhHhHhhc---ccCCceeccceEE
Confidence            999  999999998876   3578999999874

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.1e-54  Score=435.04  Aligned_cols=410  Identities=26%  Similarity=0.361  Sum_probs=316.1

Q ss_pred             cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeec------CCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 013850            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDA------DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV   82 (435)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~------~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V   82 (435)
                      ..|..-|..+.+.|    .|+.++|.+.++++|+++|+++.      +..+.+||+||.+++.++|+.|+++|+++||+|
T Consensus        11 ~~~e~~~~~~~~~~----~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V   86 (632)
T PRK07529         11 EAIEAVPLAARDLP----ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVV   86 (632)
T ss_pred             HHHhcCCchhhcCC----CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            33443444555666    57999999999999999999863      124789999999999999999999999999999


Q ss_pred             EEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH-----HHHhh----cC-CCcEEecc
Q 013850           83 LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKD----LN-LPAVLLGS  152 (435)
Q Consensus        83 ~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~----~~-~~~~~~~~  152 (435)
                      +++++|++++++++|||+++| +++|+++.++.+++.++++.++++++|++..+.     +.+..    .. .+.++...
T Consensus        87 ~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (632)
T PRK07529         87 AFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVD  165 (632)
T ss_pred             EEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEec
Confidence            999999999999999999999 569999999999999999999999999986432     22211    11 11222211


Q ss_pred             CCccccc--ccc------cccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHH
Q 013850          153 KDKVSSS--GLI------SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI  224 (435)
Q Consensus       153 ~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~  224 (435)
                      .......  ...      ........|.+.+...............++++++|+|||||||.||+|.++|+++.......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~  245 (632)
T PRK07529        166 LARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLG  245 (632)
T ss_pred             CcccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHH
Confidence            1100000  000      01223445555554433211222334578999999999999999999999999998876554


Q ss_pred             HhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCC--C-C---HHHHHHHHHhcCceEEEecHHHHHHHH
Q 013850          225 SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F-D---IEMALRAIEKYRVTVWWVVPPIILALA  298 (435)
Q Consensus       225 ~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~--~-~---~~~~~~~l~~~~~t~~~~~P~~~~~l~  298 (435)
                      .....+  ..++++++.+|++|+++....++.++..|+++++.+.  + +   ...+++.++++++|++.++|+++..|+
T Consensus       246 ~~~~~~--~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~  323 (632)
T PRK07529        246 ALLLGL--GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALL  323 (632)
T ss_pred             HHhcCC--CCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence            443333  3349999999999999998788999999999999853  2 1   367899999999999999999999998


Q ss_pred             hcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEE
Q 013850          299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV  378 (435)
Q Consensus       299 ~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~  378 (435)
                      +... ...++++||.+++||+++++++.+++++.++ +++++.||+||++.++...... ...+.+++|.|+|+++++|+
T Consensus       324 ~~~~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~  400 (632)
T PRK07529        324 QVPV-DGHDISSLRYALCGAAPLPVEVFRRFEAATG-VRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVV  400 (632)
T ss_pred             hCcc-cCCCccceEEEEEcCCCCCHHHHHHHHHHhC-CcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEE
Confidence            8653 2347889999999999999999999999996 9999999999988776654333 23467899999999999985


Q ss_pred             eC-CCC---ccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          379 SV-DTL---KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       379 d~-~~~---~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +. +++   +++++|+.|||+++|++++.|  |+++++ +...+   ..++||+|||+++
T Consensus       401 ~~d~~g~~~~~~~~g~~Gel~v~gp~v~~G--Y~~~~~-~~~~~---~~~gw~~TGDlg~  454 (632)
T PRK07529        401 ILDDAGRYLRDCAVDEVGVLCIAGPNVFSG--YLEAAH-NKGLW---LEDGWLNTGDLGR  454 (632)
T ss_pred             EcCCCCcccccCCCCCceEEEEECCCcccc--ccCCcc-ccccc---cCCCceEcCcEEE
Confidence            32 355   789999999999999999999  998654 44433   2478999999864

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.4e-54  Score=426.61  Aligned_cols=397  Identities=28%  Similarity=0.425  Sum_probs=327.1

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      +.|+.+.|.+.++++|+++|++..+  +.+||.||.+++.++|+.|.+. |+++||+|+++++|+++++++++||+++|+
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~~~--~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~   86 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVFYG--RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANA   86 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceeecC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCc
Confidence            3689999999999999999999874  7999999999999999999998 999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcc-ccc---cc-----------cccc
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKV-SSS---GL-----------ISRS  165 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~---~~-----------~~~~  165 (435)
                      +++|+++.++.+++..+++.++++++++++.....+....    ...+++...... ...   ..           .-..
T Consensus        87 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (546)
T PRK08314         87 VVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAP  166 (546)
T ss_pred             EEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccccc
Confidence            9999999999999999999999999999988766655432    122222110000 000   00           0001


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHH
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~  245 (435)
                      .++..+++......   ........++++++|+|||||||.||+|.++|++++..+........+  ...|++++.+|++
T Consensus       167 ~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~  241 (546)
T PRK08314        167 GGVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNS--TPESVVLAVLPLF  241 (546)
T ss_pred             cccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC--CCCceEEEEcCch
Confidence            12334444443221   122344578899999999999999999999999999887765544444  3349999999999


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHH
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~  325 (435)
                      |.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..++........+++++|.+++||+++++++
T Consensus       242 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~  321 (546)
T PRK08314        242 HVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAV  321 (546)
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHH
Confidence            99999878899999999999999999999999999999999999999999998876666667889999999999999999


Q ss_pred             HHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccc
Q 013850          326 MEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI  405 (435)
Q Consensus       326 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~  405 (435)
                      .+++.+.++ .++++.||+||++.........  ..+.+++|.|+++++++|+|+++++.++.|+.|||+++|++++.| 
T Consensus       322 ~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g-  397 (546)
T PRK08314        322 AERLKELTG-LDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKG-  397 (546)
T ss_pred             HHHHHHHcC-CcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhcc-
Confidence            999999996 9999999999998766544333  345678999999999999998889999999999999999999999 


Q ss_pred             cccCCcccccccccccccCcceecCCCCC
Q 013850          406 VYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       406 ~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                       |+++++.+++.|--++.++||+|||+++
T Consensus       398 -Y~~~~~~t~~~f~~~~~~~~~~TGDl~~  425 (546)
T PRK08314        398 -YWNRPEATAEAFIEIDGKRFFRTGDLGR  425 (546)
T ss_pred             -ccCChhHhhhhhhhcCCCceEecCCEEE
Confidence             9999999888762222346999999863

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-54  Score=439.28  Aligned_cols=393  Identities=19%  Similarity=0.251  Sum_probs=303.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecC-------------------------CCcceeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD-------------------------SDESLSFSQFKSIVIKVSHSFRHLGITKKDV   81 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~-------------------------~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~   81 (435)
                      .|+.++|.++++++|+++|+....                         ..+++||+||.++++++|+.|+++|+++||+
T Consensus        69 ~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~  148 (700)
T PTZ00216         69 PNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN  148 (700)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            689999999999999999998731                         2378999999999999999999999999999


Q ss_pred             EEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcc
Q 013850           82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKV  156 (435)
Q Consensus        82 V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~  156 (435)
                      |+|+++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|++......+....     ....++..+...
T Consensus       149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~  228 (700)
T PTZ00216        149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLP  228 (700)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCc
Confidence            999999999999999999999999999999999999999999999999999977655443211     111222222110


Q ss_pred             cccccccccccccchhhhhhhcC--CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh--cc
Q 013850          157 SSSGLISRSSKIVSFHDLIELSG--SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--VG  232 (435)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~  232 (435)
                      ..  .........+|++++....  ...........++++++|+|||||||.||||++||+++.+.+.........  ..
T Consensus       229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~  306 (700)
T PTZ00216        229 AS--VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGP  306 (700)
T ss_pred             cc--cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCC
Confidence            00  0011223456777765542  111112234578999999999999999999999999999886655433211  11


Q ss_pred             -CCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHH-------HHHhcCceEEEecHHHHHHHHhcccc-
Q 013850          233 -ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR-------AIEKYRVTVWWVVPPIILALAKNSLV-  303 (435)
Q Consensus       233 -~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~-------~l~~~~~t~~~~~P~~~~~l~~~~~~-  303 (435)
                       ..+|++++.+|++|+++.. .....+..|+++++.   ++..+++       .++++++|++.++|.+++.+.+.... 
T Consensus       307 ~~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~  382 (700)
T PTZ00216        307 PEEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAK  382 (700)
T ss_pred             CCCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHH
Confidence             2349999999999999985 455667888888774   3455554       68899999999999999887653110 


Q ss_pred             ------------------------cCC----------------CCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          304 ------------------------RKF----------------DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       304 ------------------------~~~----------------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                                              .+.                ..+++|.+++||+++++++.++++..++  +++++||
T Consensus       383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG  460 (700)
T PTZ00216        383 LPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWG  460 (700)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccC
Confidence                                    000                0158999999999999999988877664  9999999


Q ss_pred             cccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCC-CccCCCCCceeEEEeCCCccccccccCCcccccccccccc
Q 013850          344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  422 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~  422 (435)
                      +||+++..+.....  ....+++|+|++|++++|+|.+. .....+++.|||+|+|++++.|  ||++|+.|.+.|   +
T Consensus       461 ~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~G--Y~~~pe~T~~~f---~  533 (700)
T PTZ00216        461 LTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKG--YYKQEELTREVL---D  533 (700)
T ss_pred             cccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccch--hcCChhHhhhhc---c
Confidence            99998766654433  45678999999999999999543 2334567789999999999999  999999999987   3


Q ss_pred             cCcceecCCCCC
Q 013850          423 TDSFIRGKDQQT  434 (435)
Q Consensus       423 ~~~~~~tgD~~~  434 (435)
                      .+|||+|||+++
T Consensus       534 ~dGw~~TGDig~  545 (700)
T PTZ00216        534 EDGWFHTGDVGS  545 (700)
T ss_pred             ccCCeeccceEE
Confidence            578999999874

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.8e-54  Score=433.32  Aligned_cols=416  Identities=20%  Similarity=0.225  Sum_probs=310.4

Q ss_pred             ccceeecCCCCCCCCC--CCCCchHHHHHhhcccCCCceeeeecC-----CC--cceeHHHHHHHHHHHHHHHHhCCCCC
Q 013850            8 RDGIYRSLRPPLVLPS--DPSFSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITK   78 (435)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~~~tl~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~g~~~   78 (435)
                      +..++++...+..++.  ....|+.++|.+.++++|+++|+....     .+  .++||+|+.++++++|+.|.+.|+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~  100 (660)
T PLN02430         21 VGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEP  100 (660)
T ss_pred             CCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence            4456665443222211  122789999999999999999996421     11  35799999999999999999999999


Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH-HHhhcC-----CCcEEecc
Q 013850           79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-KVKDLN-----LPAVLLGS  152 (435)
Q Consensus        79 gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~-~~~~~~-----~~~~~~~~  152 (435)
                      ||+|+|+++|++||++++|||+++|++++|+++.++.+++.++++.++++++|+++.... .+....     .+.++...
T Consensus       101 gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~  180 (660)
T PLN02430        101 GSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT  180 (660)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999875432 222211     12222222


Q ss_pred             CCcccc-cccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh-
Q 013850          153 KDKVSS-SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-  230 (435)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-  230 (435)
                      +..... ...........+|++++..... .........++++++|+|||||||.||||++||+++...+......... 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~  259 (660)
T PLN02430        181 SVTEEESDKASQIGVKTYSWIDFLHMGKE-NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQF  259 (660)
T ss_pred             CCChHHhhhhhcCCcEEEEHHHHHHhhcc-CCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhcccc
Confidence            110000 0000011123466666654431 1112233468999999999999999999999999998876554322111 


Q ss_pred             --ccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc-----
Q 013850          231 --VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-----  303 (435)
Q Consensus       231 --~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-----  303 (435)
                        ....+|++++.+|++|.++.. ..+.++..|+++++... ++..+++.|.++++|++.++|.+++.+.+....     
T Consensus       260 ~~~~~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~  337 (660)
T PLN02430        260 EDKMTHDDVYLSFLPLAHILDRM-IEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL  337 (660)
T ss_pred             ccCCCCCCEEEEeCcHHHHHHHH-HHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhcc
Confidence              122349999999999999986 45567889999987653 788899999999999999999999887652100     


Q ss_pred             --------------------------cCCC-------------C-cceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          304 --------------------------RKFD-------------I-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       304 --------------------------~~~~-------------l-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                                                ....             + ++||.+++||+++++++.+.++ .+++..++++||
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG  416 (660)
T PLN02430        338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYG  416 (660)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecc
Confidence                                      0000             1 5899999999999999876655 444478999999


Q ss_pred             cccccccccccCCCCCCcCCCCcccccCCcEEEEEe-CCCC-ccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS-VDTL-KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      +||+++.++...+.+ ....+++|.|.+++++++.| ++.+ .+++.+..|||+|+||+++.|  ||++|+.|.+.|   
T Consensus       417 ~TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~G--Y~~~~e~t~~~~---  490 (660)
T PLN02430        417 LTETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSG--YYKNPELTEEVM---  490 (660)
T ss_pred             hhhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccc--ccCChHHhhhhh---
Confidence            999988776654432 34578999999999999987 3444 556667789999999999999  999999999887   


Q ss_pred             ccCcceecCCCCC
Q 013850          422 HTDSFIRGKDQQT  434 (435)
Q Consensus       422 ~~~~~~~tgD~~~  434 (435)
                       .+|||+|||+++
T Consensus       491 -~dGw~~TGDig~  502 (660)
T PLN02430        491 -KDGWFHTGDIGE  502 (660)
T ss_pred             -hccceeccceEE
Confidence             478999999864

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.2e-53  Score=423.47  Aligned_cols=385  Identities=25%  Similarity=0.307  Sum_probs=315.9

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      .|+.+.|.+.++.+|+++|+++.+.+    +.+||.||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~  103 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI  103 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence            68999999999999999999875422    78999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH-----HHHhhc----C-CCcEEeccCCcccccccccccccccchh
Q 013850          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFH  172 (435)
Q Consensus       103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (435)
                      |++++|++|.++.+++..+++.++++++++++...     +.+...    . ...++.....            ...++.
T Consensus       104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  171 (547)
T PRK13295        104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD------------GADSFE  171 (547)
T ss_pred             CcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC------------CccCHH
Confidence            99999999999999999999999999999987541     111111    1 1122221110            112333


Q ss_pred             hhhhhcC------CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHH
Q 013850          173 DLIELSG------SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       173 ~~~~~~~------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~  246 (435)
                      ++.....      ...........++++++|+|||||||.||+|.++|+++...+........+..  ++++++..|++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~l~~~p~~h  249 (547)
T PRK13295        172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA--DDVILMASPMAH  249 (547)
T ss_pred             HHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCC--CCeEEEecCchh
Confidence            3332110      00111123356789999999999999999999999999887766554444433  499999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHH
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~  326 (435)
                      .+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.+++||+++++++.
T Consensus       250 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~  329 (547)
T PRK13295        250 QTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALV  329 (547)
T ss_pred             hhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHH
Confidence            99987789999999999999998999999999999999999999999999998776666788999999999999999999


Q ss_pred             HHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCcccccc
Q 013850          327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV  406 (435)
Q Consensus       327 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~  406 (435)
                      +++.+.++ +++++.||+||++.+..............++|+|+++++++|+| +++++++.|+.|||+++|++++.|  
T Consensus       330 ~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~g--  405 (547)
T PRK13295        330 ERARAALG-AKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGG--  405 (547)
T ss_pred             HHHHHHhC-CCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCccccc--
Confidence            99999995 99999999999887654433221123356889999999999999 578999999999999999999999  


Q ss_pred             ccCCcccccccccccccCcceecCCCCC
Q 013850          407 YINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       407 y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |+++++.+....     +|||+|||+++
T Consensus       406 Y~~~~~~t~~~~-----~g~~~TGD~~~  428 (547)
T PRK13295        406 YLKRPQLNGTDA-----DGWFDTGDLAR  428 (547)
T ss_pred             ccCCccccccCC-----CCCeecceEEE
Confidence            999999887753     66999999764

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.6e-53  Score=430.62  Aligned_cols=397  Identities=23%  Similarity=0.290  Sum_probs=309.8

Q ss_pred             CchHH-HHHhhcccCCCceeeeecCC----CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           27 FSMVH-FLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        27 ~tl~~-~l~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      .|+.. .|.++++.+|+++|++....    .+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  135 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACAR  135 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            44444 45567788999999986432    26899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HH----hhcC--CCcEEeccCCcccccccccccc
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KV----KDLN--LPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +|++++|+++.++.+++..+++.++++++|+++....         .+    ....  .+.+++...... ...  ....
T Consensus       136 ~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~  212 (625)
T TIGR02188       136 IGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGN-PVP--WVEG  212 (625)
T ss_pred             hCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCC-CcC--cccc
Confidence            9999999999999999999999999999999875321         11    1111  121222211000 000  0011


Q ss_pred             cccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHh-hhhhccCCCcEEEecchHH
Q 013850          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~l~~~~l~  245 (435)
                      ....+++++....  ....+....++++++|+|||||||.||+|+++|+++......... ...+  ..+|++++..|++
T Consensus       213 ~~~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~  288 (625)
T TIGR02188       213 RDVWWHDLMAKAS--AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDI--KDGDIFWCTADVG  288 (625)
T ss_pred             ccccHHHHHhhcC--CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCC--CCCcEEEECCCch
Confidence            1233555544322  223344567899999999999999999999999998755432221 1222  3349999999999


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCC
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAA  319 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~  319 (435)
                      |+++....++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+....  ...++++||.++++|+
T Consensus       289 ~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~  368 (625)
T TIGR02188       289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGE  368 (625)
T ss_pred             hhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecC
Confidence            999886678999999999998753    4799999999999999999999999999886532  3356889999999999


Q ss_pred             CCcHHHHHHHHhhCC--CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCC-CCCceeEEE
Q 013850          320 PLGKELMEDCQKNIP--GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWV  396 (435)
Q Consensus       320 ~l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gei~v  396 (435)
                      ++++++.+++.+.++  ++++++.||+||+++.+....+.....+++++|+|++|++++|+| ++|++++ +|+.|||++
T Consensus       369 ~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v  447 (625)
T TIGR02188       369 PINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVI  447 (625)
T ss_pred             CCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEE
Confidence            999999999999886  378999999999987765443322245678999999999999999 7899999 999999999


Q ss_pred             eC--CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          397 RG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       397 ~g--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|  |+++.|  ||++++.+.+.+ +-..+|||+|||+++
T Consensus       448 ~~p~p~~~~g--y~~~~~~~~~~~-~~~~~g~~~TGDl~~  484 (625)
T TIGR02188       448 KQPWPGMLRT--IYGDHERFVDTY-FSPFPGYYFTGDGAR  484 (625)
T ss_pred             ccCCCccccc--ccCChHHHHHHH-hccCCCEEECCceEE
Confidence            99  689999  999998776644 222367999999864

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.4e-54  Score=431.62  Aligned_cols=399  Identities=22%  Similarity=0.214  Sum_probs=300.3

Q ss_pred             CchHHHH-Hhhccc--CCCceeeeecCC----CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFL-FRNSAS--YSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l-~~~~~~--~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      .|....+ .++++.  +|+++|++....    .+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||
T Consensus        58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~  137 (647)
T PTZ00237         58 LNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSC  137 (647)
T ss_pred             eeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            5555544 455543  799999986421    268999999999999999999999999999999999999999999999


Q ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccc---------cHHHHhhc---C---CCcEEeccCCc---ccccc-
Q 013850          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE---------LWDKVKDL---N---LPAVLLGSKDK---VSSSG-  160 (435)
Q Consensus       100 ~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~---------~~~~~~~~---~---~~~~~~~~~~~---~~~~~-  160 (435)
                      +++|++++|+++.++.+++..++++++++++|+++.         ..+.+.+.   .   ...+++.....   ..... 
T Consensus       138 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  217 (647)
T PTZ00237        138 ARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKK  217 (647)
T ss_pred             HHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccccc
Confidence            999999999999999999999999999999999752         12222111   1   11222211100   00000 


Q ss_pred             --cccccccccchhhhhhhcC---CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCC
Q 013850          161 --LISRSSKIVSFHDLIELSG---SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD  235 (435)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~  235 (435)
                        ..........|++++....   ...........++++++|+|||||||.||||+++|.+.+........ .......+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~-~~~~~~~~  296 (647)
T PTZ00237        218 IETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWR-SIIEKDIP  296 (647)
T ss_pred             ccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHH-HhcCCCCC
Confidence              0000112234555543211   00112234567899999999999999999999999984433222111 11222234


Q ss_pred             cEEEecchHHHHHHHHHHHHhhhhcCcEEEecCC--CC----HHHHHHHHHhcCceEEEecHHHHHHHHhccc-----cc
Q 013850          236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FD----IEMALRAIEKYRVTVWWVVPPIILALAKNSL-----VR  304 (435)
Q Consensus       236 d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~--~~----~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-----~~  304 (435)
                      +++++..|++|+.+. ..++.+|..|+++++.+.  +.    +..+++.++++++|++.++|++++.|.+...     ..
T Consensus       297 d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  375 (647)
T PTZ00237        297 TVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRS  375 (647)
T ss_pred             cEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccc
Confidence            899999999998765 368899999999998753  12    6889999999999999999999999987532     23


Q ss_pred             CCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCc
Q 013850          305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK  384 (435)
Q Consensus       305 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  384 (435)
                      ..++++||.+++||+++++++.+++++.++ +++++.||+||+++.+...... .....+++|+|++|++++|+| ++|+
T Consensus       376 ~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~yG~TE~~~~~~~~~~~-~~~~~~s~G~p~~g~~~~i~d-~~g~  452 (647)
T PTZ00237        376 KYDLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGYGQTEIGITYLYCYGH-INIPYNATGVPSIFIKPSILS-EDGK  452 (647)
T ss_pred             ccCcchheEEEecCccCCHHHHHHHHHhcC-CCEEeeechHHhChhhhccCCC-CCCCCCCCccCcCCceEEEEC-CCCC
Confidence            457899999999999999999999999997 9999999999998665543332 123458999999999999999 5899


Q ss_pred             cCCCCCceeEEEeCC---CccccccccCCcccccccccccccCcceecCCCCC
Q 013850          385 PLPPNQLGEIWVRGP---NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       385 ~~~~g~~Gei~v~g~---~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++.|+.|||++++|   +++.|  ||++++.+.+.|  ...+|||+|||+++
T Consensus       453 ~~~~ge~GEl~v~~p~~p~~~~g--y~~~~~~~~~~f--~~~~g~~~TGDlg~  501 (647)
T PTZ00237        453 ELNVNEIGEVAFKLPMPPSFATT--FYKNDEKFKQLF--SKFPGYYNSGDLGF  501 (647)
T ss_pred             CCCCCCceEEEEeccCCchhhCc--eeCCHHHHHHHH--hCCCCEEECCcEEE
Confidence            999999999999986   78999  999999887644  12267999999873

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-53  Score=430.16  Aligned_cols=384  Identities=23%  Similarity=0.295  Sum_probs=298.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecCC--C--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADS--D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~--~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      .|+.+.|.++++++|+++|+++.+.  +  +.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++
T Consensus        49 ~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~  128 (624)
T PRK12582         49 RSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQA  128 (624)
T ss_pred             cCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence            6899999999999999999987531  2  68999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCH-----HHHHHHHHhcCCeEEEEcccc--HHHHhhc---CCCcEEeccCCcccccccccccccccchh
Q 013850          103 GAIASTANPVYTV-----SELSKQVKDSNPKLVITVPEL--WDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSFH  172 (435)
Q Consensus       103 G~~~v~i~~~~~~-----~~~~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (435)
                      |++++|++|.++.     +++.++++.++++++|+++..  ...+...   ..+.+.+...         ........+.
T Consensus       129 G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~  199 (624)
T PRK12582        129 GVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGP---------GEGIASIAFA  199 (624)
T ss_pred             CCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCC---------CcccccccHH
Confidence            9999999999874     899999999999999998642  1111111   1122222111         0111223455


Q ss_pred             hhhhhcCCC-CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccC-CCcEEEecchHHHHHHH
Q 013850          173 DLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVFGL  250 (435)
Q Consensus       173 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~d~~l~~~~l~~~~g~  250 (435)
                      ++....... .........++++++|+|||||||.||+|.+||+++................ ..+++++.+|++|.+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~  279 (624)
T PRK12582        200 DLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGG  279 (624)
T ss_pred             HHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhH
Confidence            544322210 0011233567899999999999999999999999998876554332222211 13799999999999998


Q ss_pred             HHHHHhhhhcCcEEEecCC-CC---HHHHHHHHHhcCceEEEecHHHHHHHHhccccc----CCCCcceeEEEecCCCCc
Q 013850          251 SVILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR----KFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       251 ~~~~~~~l~~G~~i~~~~~-~~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~----~~~l~~lr~i~~gG~~l~  322 (435)
                      ...++.++..|+++++.+. ++   ...+++.++++++|++.++|+++..|.+.....    ...+++||.+++||++++
T Consensus       280 ~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~  359 (624)
T PRK12582        280 NANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLS  359 (624)
T ss_pred             HHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCC
Confidence            7677889999999998753 33   345677888999999999999999887653222    234689999999999999


Q ss_pred             HHHHHHHHhhC----C-CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEe
Q 013850          323 KELMEDCQKNI----P-GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR  397 (435)
Q Consensus       323 ~~~~~~~~~~~----~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~  397 (435)
                      +++.+++++.+    + ++++++.||+||++.++......  ..+.+++|+|++|++++|++        .|+.|||+++
T Consensus       360 ~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~--------~G~~GEl~vr  429 (624)
T PRK12582        360 DDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP--------VGDKYEVRVK  429 (624)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc--------CCCceEEEEE
Confidence            99999998863    3 36899999999998766533332  35678999999999999964        3778999999


Q ss_pred             CCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          398 GPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       398 g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |++++.|  ||++|+.|.+.|   +.+|||+|||+++
T Consensus       430 g~~v~~G--Y~~~p~~t~~~f---~~dgw~~TGDlg~  461 (624)
T PRK12582        430 GPNVTPG--YHKDPELTAAAF---DEEGFYRLGDAAR  461 (624)
T ss_pred             CCccccc--ccCCccchhhhc---CccCCccccceEE
Confidence            9999999  999999998877   3578999999874

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=3.1e-53  Score=428.04  Aligned_cols=398  Identities=23%  Similarity=0.276  Sum_probs=307.2

Q ss_pred             CchH-HHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           27 FSMV-HFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        27 ~tl~-~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      .|+. ++|.++++.+|+++|+++.+    ..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        51 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~  130 (628)
T TIGR02316        51 TNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACAR  130 (628)
T ss_pred             eeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            5554 56667788899999998632    236899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH---------HHHhh----c--CCCcEEeccCCcccccccccccc
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKD----L--NLPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +|++++|+++.++.+++..+++.++++++|+++...         +.+..    .  ....+++.......   ......
T Consensus       131 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---~~~~~~  207 (628)
T TIGR02316       131 IGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP---MRLIPG  207 (628)
T ss_pred             hCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC---cCcccC
Confidence            999999999999999999999999999999986432         11111    1  11222222211000   000011


Q ss_pred             cccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHH-HHhhhhhccCCCcEEEecchHH
Q 013850          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~d~~l~~~~l~  245 (435)
                      ....+.++...... ...+.....++++++|+|||||||.||||+++|.++...... ......+  ..+|++++..|++
T Consensus       208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~  284 (628)
T TIGR02316       208 RDVDYAALRTQHED-AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGI--RAGQVMFSASDVG  284 (628)
T ss_pred             ccccHHHHhhcccc-CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCC--CCCcEEEEcCCCC
Confidence            12345554432211 112223356899999999999999999999999998644322 2222233  3349999999999


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCC
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAA  319 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~  319 (435)
                      |+++....++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+...  ....++++||.+++||+
T Consensus       285 ~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe  364 (628)
T TIGR02316       285 WVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGE  364 (628)
T ss_pred             eeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecC
Confidence            999986678999999999999863    478999999999999999999999999987643  23557899999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCC--CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEe
Q 013850          320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR  397 (435)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~  397 (435)
                      ++++++.+++++.++ ..+++.||+||++..+.......  ...+.+++|+|++|++++|+|+++|++++.|+.|||+++
T Consensus       365 ~l~~~~~~~~~~~~~-~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~  443 (628)
T TIGR02316       365 PLDEPTAHWITDGLG-KPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVV  443 (628)
T ss_pred             CCCHHHHHHHHHHhC-CCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEe
Confidence            999999999999986 89999999999885443322211  134568899999999999999668999999999999999


Q ss_pred             CC---CccccccccCCcccccccc-cccccCcceecCCCCC
Q 013850          398 GP---NVTPGIVYINFFVFTLFLW-GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       398 g~---~~~~g~~y~~~~~~~~~~~-~~~~~~~~~~tgD~~~  434 (435)
                      ||   +++.|  ||++++.+.+.+ ..+ .++||+|||+++
T Consensus       444 gp~~~g~~~~--~~~~~~~~~~~~~~~~-~~~~~~TGD~g~  481 (628)
T TIGR02316       444 PPLPPGCLST--VWGDDARFLKTYWSHF-KRPLYSSFDWGI  481 (628)
T ss_pred             cCCCcccccc--ccCChHHHHHhhhhcC-CCCEEECCceEE
Confidence            98   57889  999998776644 112 367999999864

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-53  Score=419.87  Aligned_cols=393  Identities=27%  Similarity=0.388  Sum_probs=330.6

Q ss_pred             CCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        24 ~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      ....|+.++|.+.++++|+++|+.+.  +..+||.||.+.+.++|+.|.+.|+++||+|+++++|+++++++++||+++|
T Consensus         8 ~~~~~l~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G   85 (523)
T PRK08316          8 ARRQTIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAG   85 (523)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            33478999999999999999999987  4899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC----CcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (435)
                      ++++|+++..+.+++..+++.+++++++++++....+.....    ..+......     ...........+.++.....
T Consensus        86 ~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  160 (523)
T PRK08316         86 AVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVL-----GGREAPGGWLDFADWAEAGS  160 (523)
T ss_pred             cEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecc-----cccccccchhhHHHHHhcCC
Confidence            999999999999999999999999999999887766653321    111110000     00012223445555444332


Q ss_pred             CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~  259 (435)
                        .........++++++++|||||||.||+|.++|+++............+..  ++++++.+|++|.+++...++.++.
T Consensus       161 --~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~h~~g~~~~~~~~~~  236 (523)
T PRK08316        161 --VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSA--DDIPLHALPLYHCAQLDVFLGPYLY  236 (523)
T ss_pred             --CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCC--CceEEEccCCchhhhHHHHHHHHHh
Confidence              222345567889999999999999999999999999887666555554433  3999999999999998766777899


Q ss_pred             cCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       260 ~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      .|+++++.+..++..+++.++++++|++.++|+++..|.+.......+++++|.++.||++++.++.+.+++.+++.+++
T Consensus       237 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~  316 (523)
T PRK08316        237 VGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFY  316 (523)
T ss_pred             cCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCcee
Confidence            99999999888999999999999999999999999999988776777889999999999999999999999999779999


Q ss_pred             cCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      +.||+||++.+.......+.....+++|+|+++++++|+| +++.+++.|+.|||+++|+.++.|  |+++++.+.+.| 
T Consensus       317 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~--y~~~~~~~~~~~-  392 (523)
T PRK08316        317 NCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLG--YWDDPEKTAEAF-  392 (523)
T ss_pred             eeecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhh--hcCCHHHHHHHh-
Confidence            9999999988776654443345568999999999999999 578999999999999999999999  999999998887 


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                         .++||+|||+++
T Consensus       393 ---~~~~~~TGDl~~  404 (523)
T PRK08316        393 ---RGGWFHSGDLGV  404 (523)
T ss_pred             ---hCCCeeccceEE
Confidence               478999999863

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-53  Score=423.45  Aligned_cols=388  Identities=27%  Similarity=0.388  Sum_probs=315.8

Q ss_pred             CchH-HHHHhhcc-cCCCceeeeecC--CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           27 FSMV-HFLFRNSA-SYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        27 ~tl~-~~l~~~~~-~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      .++. +.+.++++ .+|+++|+...+  ..+.+||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~  121 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN  121 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            5555 46677765 589999998653  2368999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC---CCcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (435)
Q Consensus       103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (435)
                      |++++|+++.++.+++.++++.++++++++++..........   .+.+++.....       ........+.+++....
T Consensus       122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  194 (570)
T PRK04319        122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDV-------EEGPGTLDFNALMEQAS  194 (570)
T ss_pred             CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCc-------CCCcCccCHHHHHhhcC
Confidence            999999999999999999999999999999987654432211   11222211110       11123345555554333


Q ss_pred             CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~  259 (435)
                        .........++++++|+|||||||.||+|.++|+++............+.  .+|++++..|++|.+|....++.++.
T Consensus       195 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~l~  270 (570)
T PRK04319        195 --DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLH--EDDVYWCTADPGWVTGTSYGIFAPWL  270 (570)
T ss_pred             --CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCC--CCceEEecCChHHhhCchHHHHHHHh
Confidence              23333455678999999999999999999999999987765544444433  34999999999999998778899999


Q ss_pred             cCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCC
Q 013850          260 KGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (435)
Q Consensus       260 ~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~  336 (435)
                      .|+++++.. .+++..+++.++++++|++.++|++++.|.+...  ....++++||.+++||+++++++.+++++.++ .
T Consensus       271 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~  349 (570)
T PRK04319        271 NGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG-L  349 (570)
T ss_pred             cCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhC-C
Confidence            999998875 6799999999999999999999999999987643  23456889999999999999999999999987 9


Q ss_pred             eeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC--CCccccccccCCcccc
Q 013850          337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG--PNVTPGIVYINFFVFT  414 (435)
Q Consensus       337 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g--~~~~~g~~y~~~~~~~  414 (435)
                      ++++.||+||+++.+....... ...++++|+|+++++++|+| +++..+++|+.|||+++|  ++++.|  ||++++.+
T Consensus       350 ~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~G--Y~~~~~~~  425 (570)
T PRK04319        350 PIHDNWWMTETGGIMIANYPAM-DIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRG--IWNNPEKY  425 (570)
T ss_pred             CeEeceeecccCCEEEecCCCC-CCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhH--hcCCHHHh
Confidence            9999999999987665443321 34578999999999999999 578888999999999997  899999  99999999


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.|    .+|||+|||+++
T Consensus       426 ~~~~----~~gw~~TGDl~~  441 (570)
T PRK04319        426 ESYF----AGDWYVSGDSAY  441 (570)
T ss_pred             hhhh----cCCceEeCcEEE
Confidence            8877    378999999864

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.4e-53  Score=417.77  Aligned_cols=390  Identities=27%  Similarity=0.418  Sum_probs=327.2

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|.+.++.+|+++|+++.  ++.+||+||.+.+.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~   82 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV   82 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            68999999999999999999987  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|+++..+.+++..++++++++++++++..........     .+.+++.......     .......+|.++.....  
T Consensus        83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--  155 (513)
T PRK07656         83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDD-----PHTEKMKTFTDFLAAGD--  155 (513)
T ss_pred             EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccc-----cCccccccHHHHHhcCC--
Confidence            99999999999999999999999999987665443321     1222222211100     00112245555554332  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .........++++++|+|||||||.||+|.++|.++...+........+..  ++++++.+|++|.+++...++.++..|
T Consensus       156 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~G  233 (513)
T PRK07656        156 PAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE--GDRYLAANPFFHVFGYKAGVNAPLMRG  233 (513)
T ss_pred             CCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCC--CCeEEEccchHHHHHHHHHHHHHHHcC
Confidence            222334567899999999999999999999999999887665544444433  399999999999999987789999999


Q ss_pred             cEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCC-eeec
Q 013850          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA-TIFQ  340 (435)
Q Consensus       262 ~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~-~~~~  340 (435)
                      +++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+.++ . .+++
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~  312 (513)
T PRK07656        234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELG-VDIVLT  312 (513)
T ss_pred             ceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcC-CCceEe
Confidence            9999998889999999999999999999999999999987777778899999999999999999999999997 6 9999


Q ss_pred             CcCcccccccccccCCCCC-CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          341 GYGMTETCAPISLENPLVG-VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       341 ~yG~tE~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      .||+||+++++........ ....+++|.|+++++++|+| +++++++.|+.|||+++|+.++.|  |++++..+...+ 
T Consensus       313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~-  388 (513)
T PRK07656        313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKG--YYDDPEATAAAI-  388 (513)
T ss_pred             EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhh--hcCCHHHHhhhh-
Confidence            9999999887766544321 12267899999999999999 579999999999999999999999  999999887765 


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                        ..++||+|||+++
T Consensus       389 --~~~~~~~tGDl~~  401 (513)
T PRK07656        389 --DADGWLHTGDLGR  401 (513)
T ss_pred             --ccCCceeccceEE
Confidence              3478999999763

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3.9e-53  Score=422.47  Aligned_cols=385  Identities=23%  Similarity=0.322  Sum_probs=303.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCC--------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSD--------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~--------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA   98 (435)
                      .|+.++|.+.++++|+++|+++.+.+        +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la   85 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA   85 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence            68899999999999999999876422        2899999999999999999999999999999999999999999999


Q ss_pred             HHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc--ccHHHHhhcC---CCcEEeccCCcccccccccccccccchhh
Q 013850           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP--ELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (435)
Q Consensus        99 ~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (435)
                      |+++|++++|++|.++.+++..+++.++++++|+++  .....+....   ....+....         ........+++
T Consensus        86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~~~~~~  156 (552)
T PRK09274         86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGG---------RLLWGGTTLAT  156 (552)
T ss_pred             HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheecccc---------ccccCCccHHH
Confidence            999999999999999999999999999999999975  2222222111   111111110         00011123343


Q ss_pred             hhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHH
Q 013850          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (435)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~  253 (435)
                      +...... .........++++++|+|||||||.||+|.++|+++...+........+..  +++.++..|++|++++   
T Consensus       157 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~pl~~~~~~---  230 (552)
T PRK09274        157 LLRDGAA-APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP--GEIDLPTFPLFALFGP---  230 (552)
T ss_pred             hcccCcc-ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCC--CceeeeccCHHHhhhh---
Confidence            3311111 122334556789999999999999999999999999988776555444433  3899999999886544   


Q ss_pred             HHhhhhcCcEEEecC-------CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHH
Q 013850          254 LYDQLQKGNCVVSMG-------KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (435)
Q Consensus       254 ~~~~l~~G~~i~~~~-------~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~  326 (435)
                           ..|+++++.+       .+++..+++.|+++++|+++++|+++..|.+.......++++||.+++||+++++++.
T Consensus       231 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~  305 (552)
T PRK09274        231 -----ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVI  305 (552)
T ss_pred             -----hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHH
Confidence                 3477777653       4689999999999999999999999999998766666789999999999999999999


Q ss_pred             HHHHhhCC-CCeeecCcCcccccccccccCCC------C--CCcCCCCcccccCCcEEEEEeCC--------CCccCCCC
Q 013850          327 EDCQKNIP-GATIFQGYGMTETCAPISLENPL------V--GVRRSGSAGTLVAGVEAQIVSVD--------TLKPLPPN  389 (435)
Q Consensus       327 ~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~------~--~~~~~~~~G~~~~~~~~~i~d~~--------~~~~~~~g  389 (435)
                      +++++.|+ ++++++.||+||+++++......      .  ......++|+|+++++++|+|++        ++++++.|
T Consensus       306 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g  385 (552)
T PRK09274        306 ERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATG  385 (552)
T ss_pred             HHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCC
Confidence            99999997 37999999999988765543211      0  01123478999999999999952        56789999


Q ss_pred             CceeEEEeCCCccccccccCCcccccccccccccCc--ceecCCCCC
Q 013850          390 QLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS--FIRGKDQQT  434 (435)
Q Consensus       390 ~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~--~~~tgD~~~  434 (435)
                      +.|||+++|++++.|  ||++++.|...+ ..+.+|  ||+|||+++
T Consensus       386 ~~Gel~v~g~~~~~G--Y~~~~~~t~~~~-~~~~~g~~w~~TGDlg~  429 (552)
T PRK09274        386 EIGEIVVAGPMVTRS--YYNRPEATRLAK-IPDGQGDVWHRMGDLGY  429 (552)
T ss_pred             CeeEEEEecCccccc--ccCChHHhhhhh-cccCCCCcEEEcCCEEE
Confidence            999999999999999  999999988765 112345  999999864

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-52  Score=425.37  Aligned_cols=397  Identities=22%  Similarity=0.312  Sum_probs=309.6

Q ss_pred             CchH-HHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           27 FSMV-HFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        27 ~tl~-~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      .|+. +.|.++++++|+++|++..+    ..+.+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus        66 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  145 (637)
T PRK00174         66 LNVSYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR  145 (637)
T ss_pred             eEHHHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            3443 45667788899999998643    135899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhh----cC-CCcEEeccCCccccccccccccc
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKD----LN-LPAVLLGSKDKVSSSGLISRSSK  167 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~  167 (435)
                      +|++++|+++.++.+++.++++.++++++|+++....         .+..    .. .+.+++...... ...  .....
T Consensus       146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~  222 (637)
T PRK00174        146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGG-DVD--WVEGR  222 (637)
T ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCC-CcC--cCCCC
Confidence            9999999999999999999999999999999875421         1111    11 122222211100 000  00111


Q ss_pred             ccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHh-hhhhccCCCcEEEecchHHH
Q 013850          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~l~~~~l~~  246 (435)
                      ...++++.....  .........++++++|+|||||||.||+|+++|++++........ ...+  ...|++++..|++|
T Consensus       223 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~  298 (637)
T PRK00174        223 DLWWHELVAGAS--DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY--KDGDVYWCTADVGW  298 (637)
T ss_pred             cccHHHHHhhcC--CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCC--CCCcEEEEcCCchH
Confidence            233455543322  223344567889999999999999999999999998765433221 1222  23499999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCC
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAP  320 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~  320 (435)
                      +.+....++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|++....  ...++++||.+++||++
T Consensus       299 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~  378 (637)
T PRK00174        299 VTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEP  378 (637)
T ss_pred             hhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCC
Confidence            99987678999999999998753    4799999999999999999999999999886532  23567899999999999


Q ss_pred             CcHHHHHHHHhhCCC--CeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC
Q 013850          321 LGKELMEDCQKNIPG--ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG  398 (435)
Q Consensus       321 l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g  398 (435)
                      +++++.+++.+.++.  +++++.||+||+++......+.....+.+++|+|++|++++|+| ++|++++.|+.|||+++|
T Consensus       379 l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g  457 (637)
T PRK00174        379 INPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKD  457 (637)
T ss_pred             CCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcC
Confidence            999999999998863  78999999999987665433322234567899999999999999 689999999999999999


Q ss_pred             --CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 --PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 --~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                        |+++.|  ||++++.+.+.+ |-..+|||+|||+++
T Consensus       458 ~~p~~~~g--y~~~~~~~~~~~-~~~~~g~~~TGDl~~  492 (637)
T PRK00174        458 PWPGMMRT--IYGDHERFVKTY-FSTFKGMYFTGDGAR  492 (637)
T ss_pred             CCCccccc--ccCCHHHHHHhh-hcCCCCEEECCceEE
Confidence              689999  999998776644 223467999999864

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-52  Score=420.75  Aligned_cols=398  Identities=28%  Similarity=0.371  Sum_probs=322.3

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.+++.++++++|+++|+++.  ++.+||.||.+.++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  109 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFF--GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV  109 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            68999999999999999999986  5789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcc-c-cc----------------ccccc
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKV-S-SS----------------GLISR  164 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~----------------~~~~~  164 (435)
                      +|++|.++.+++.++++.++++++|+++.....+....    .+.++....... . ..                .....
T Consensus       110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (573)
T PRK05605        110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGP  189 (573)
T ss_pred             eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccC
Confidence            99999999999999999999999999887655443322    111111110000 0 00                00001


Q ss_pred             cccccchhhhhhhcCCC--CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecc
Q 013850          165 SSKIVSFHDLIELSGSV--TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL  242 (435)
Q Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~  242 (435)
                      ..+...|.++.......  .........++++++++|||||||.||+|.++|+++...+.............++++++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
T PRK05605        190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAAL  269 (573)
T ss_pred             CCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEec
Confidence            12334455554332210  0022234567899999999999999999999999998775543222211122348999999


Q ss_pred             hHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850          243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       243 ~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~  322 (435)
                      |++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|++++.|.+.......++++||.+++||++++
T Consensus       270 p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~  349 (573)
T PRK05605        270 PMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALP  349 (573)
T ss_pred             ChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCC
Confidence            99999998777888899999999998889999999999999999999999999999987777778899999999999999


Q ss_pred             HHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCC-CccCCCCCceeEEEeCCCc
Q 013850          323 KELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEIWVRGPNV  401 (435)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gei~v~g~~~  401 (435)
                      +++.++|.+.++ .++++.||+||+++++....... ..+++++|.|+++++++|+|+++ +.+++.|+.|||+++|+.+
T Consensus       350 ~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~  427 (573)
T PRK05605        350 VSTVELWEKLTG-GLLVEGYGLTETSPIIVGNPMSD-DRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQV  427 (573)
T ss_pred             HHHHHHHHHHhC-CCeecccccchhchhhhcCCccc-CCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCch
Confidence            999999999886 99999999999987766543332 34568999999999999999766 6899999999999999999


Q ss_pred             cccccccCCcccccccccccccCcceecCCCCC
Q 013850          402 TPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       402 ~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.|  |+++++.+.+.|    .+|||+|||++.
T Consensus       428 ~~g--y~~~~~~~~~~~----~~g~~~TGD~~~  454 (573)
T PRK05605        428 FKG--YWNRPEETAKSF----LDGWFRTGDVVV  454 (573)
T ss_pred             hhh--hcCChhHhhhcc----cCCCcccCCEEE
Confidence            999  999999998877    356899998763

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.3e-54  Score=377.67  Aligned_cols=384  Identities=23%  Similarity=0.309  Sum_probs=326.1

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.+.|.+++.++|+++|+++++  +.+||+||.++++++|..|+++|+++||+|.+.+||..++++++||++++|+.+
T Consensus        28 ~~l~d~L~~~A~~~pdriAv~d~~--~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P  105 (542)
T COG1021          28 RTLTDILTDHAARYPDRIAVIDGE--RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP  105 (542)
T ss_pred             CcHHHHHHHHHhhcCCceEEecCc--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence            689999999999999999999984  789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccc--------cHHHHhhcC--CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPE--------LWDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~--------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      |..=|.....++....+.++++..|.+..        +...+....  .+.+++..+...           ....+..+.
T Consensus       106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~-----------~~~~~~~~~  174 (542)
T COG1021         106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEH-----------PSVLEAALC  174 (542)
T ss_pred             hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCC-----------cchhhhhhh
Confidence            98888888899999999999999998752        223222222  355666543211           111111221


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~  255 (435)
                      .... ...+.+..+++++++.+.+.||||.||.+..||.....++....+.+.+...  .++++.+|..|.+.+.. ..+
T Consensus       175 ~~a~-~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~--tvyL~~LP~AHNfplssPG~L  251 (542)
T COG1021         175 HPAG-LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQ--TVYLCALPAAHNFPLSSPGAL  251 (542)
T ss_pred             Cccc-cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCcc--ceEEEecccccCCCCCCcchh
Confidence            1111 2334566788899999999999999999999999999888887787777666  99999999999886643 378


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      ..+.+|+++|+.++.++.....+|++|+||+..++|.+...+++.......+++|||++.+||+.+++++.+++...++ 
T Consensus       252 Gv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-  330 (542)
T COG1021         252 GVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG-  330 (542)
T ss_pred             heeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC-
Confidence            9999999999999999999999999999999999999999999998888899999999999999999999999999997 


Q ss_pred             CeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccc
Q 013850          336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT  414 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~  414 (435)
                      +.+.+.|||.| |.+....-.+....-..+.|+|+ |.-+++|+| ++|+++++||+|+|..+||..+.|  ||+.|+.+
T Consensus       331 C~LQQVFGMAE-GLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirG--Yyrap~HN  406 (542)
T COG1021         331 CQLQQVFGMAE-GLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRG--YYRAPEHN  406 (542)
T ss_pred             chHHHHhhhhh-hhhcccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeee--eccCchhh
Confidence            99999999999 33333322222244467899999 888999999 799999999999999999999999  99999999


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.|   +.+|||+|||+++
T Consensus       407 a~aF---~a~GFYrsGD~V~  423 (542)
T COG1021         407 ARAF---DADGFYRSGDLVR  423 (542)
T ss_pred             hhcc---CcCCceecCceeE
Confidence            9988   4789999999864

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-52  Score=416.96  Aligned_cols=395  Identities=23%  Similarity=0.383  Sum_probs=314.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .|+.+.|.+.++++|+++|+++.  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~  101 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI  101 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            58999999999999999999976  4899999999999999999987 59999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcccc-c---c------------ccccc
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSS-S---G------------LISRS  165 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~---~------------~~~~~  165 (435)
                      ++|++|.++.+++..+++.++++++|+++.....+....    .+.+++........ .   .            .....
T Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK05677        102 VVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL  181 (562)
T ss_pred             EeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence            999999999999999999999999999877655443321    22222211100000 0   0            00000


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc-cCCCcEEEecchH
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCVLPM  244 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~l~~~~l  244 (435)
                      .....+.+.+..... .........++++++|+|||||||.||+|.++|+++.............. ....+++++.+|+
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl  260 (562)
T PRK05677        182 PQAVKFNDALAKGAG-QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL  260 (562)
T ss_pred             cccccHHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence            112233333322221 12223345679999999999999999999999999987654433322221 1223789999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcH
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~  323 (435)
                      +|.+++...++.++..|++.++.+ .+++..+++.++++++|.++++|+++..|.+........++++|.+++||+++++
T Consensus       261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~  340 (562)
T PRK05677        261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL  340 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence            999998767778888888776664 5789999999999999999999999999988765555567899999999999999


Q ss_pred             HHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccc
Q 013850          324 ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP  403 (435)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~  403 (435)
                      ++.+.|++.++ +++++.||+||++.++......  ..+++++|.|+++++++|+|+ ++..++.|+.|||+++|+.++.
T Consensus       341 ~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~  416 (562)
T PRK05677        341 ATAERWKEVTG-CAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGELCVKGPQVMK  416 (562)
T ss_pred             HHHHHHHHHcC-CCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEECC-CCCCCCCCCCeEEEEecCccch
Confidence            99999999886 9999999999988766554332  345678999999999999994 7899999999999999999999


Q ss_pred             cccccCCcccccccccccccCcceecCCCC
Q 013850          404 GIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       404 g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      |  ||++++.+.+.|   ..++||+|||++
T Consensus       417 g--Y~~~~~~t~~~~---~~~g~~~TGDlg  441 (562)
T PRK05677        417 G--YWQRPEATDEIL---DSDGWLKTGDIA  441 (562)
T ss_pred             h--hcCCchhhhhcc---CCCCcccccceE
Confidence            9  999999998866   357899999986

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2e-52  Score=418.19  Aligned_cols=397  Identities=26%  Similarity=0.361  Sum_probs=323.1

Q ss_pred             CCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           22 PSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        22 ~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      +..++.|+.+.|.+.++++|+++|+++.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus        11 ~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~   90 (559)
T PRK08315         11 VPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAK   90 (559)
T ss_pred             CChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            33444789999999999999999999876678999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH-----HHhhcCCCc-----------------EEeccCCccccc
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLNLPA-----------------VLLGSKDKVSSS  159 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~~~~  159 (435)
                      +|++++|++|..+.+++..+++.++++++++++....     .+.......                 .++..+.     
T Consensus        91 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  165 (559)
T PRK08315         91 IGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD-----  165 (559)
T ss_pred             hCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc-----
Confidence            9999999999999999999999999999999875421     111110000                 0111000     


Q ss_pred             ccccccccccchhhhhhhcCCC----CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCC
Q 013850          160 GLISRSSKIVSFHDLIELSGSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD  235 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~  235 (435)
                         ........+.++.......    .........++++++++|||||||.||+|.++|+++...+........+..  +
T Consensus       166 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~  240 (559)
T PRK08315        166 ---EKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE--E  240 (559)
T ss_pred             ---cCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC--C
Confidence               0112223444443322100    011223456788999999999999999999999999887766555554433  3


Q ss_pred             cEEEecchHHHHHHHHHHHHhhhhcCcEEEe-cCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEE
Q 013850          236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVS-MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV  314 (435)
Q Consensus       236 d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i  314 (435)
                      |+++...|++|.+++...++.++..|+++++ ...+++..+++.++++++|++.++|+++..++.........+++||.+
T Consensus       241 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~  320 (559)
T PRK08315        241 DRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTG  320 (559)
T ss_pred             ceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhhee
Confidence            9999999999999998788999999999984 457899999999999999999999999999988776666778999999


Q ss_pred             EecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCC-CcCCCCcccccCCcEEEEEeCCCCccCCCCCcee
Q 013850          315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG-VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGE  393 (435)
Q Consensus       315 ~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge  393 (435)
                      ++||++++.++.+.+.+.++..++++.||+||++.+++....... ..+..++|+|+++++++|+|++++++++.|+.||
T Consensus       321 ~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GE  400 (559)
T PRK08315        321 IMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGE  400 (559)
T ss_pred             EecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceE
Confidence            999999999999999999986679999999999876654433221 2356899999999999999987799999999999


Q ss_pred             EEEeCCCccccccccCCcccccccccccccCcceecCCCC
Q 013850          394 IWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       394 i~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      |+++|++++.|  ||++++.+...+   ..++||+|||++
T Consensus       401 l~v~g~~~~~g--y~~~~~~~~~~~---~~~~~~~TGD~~  435 (559)
T PRK08315        401 LCTRGYSVMKG--YWNDPEKTAEAI---DADGWMHTGDLA  435 (559)
T ss_pred             EEEECchhhhh--hcCChhHHhhcC---CCCCCEEccceE
Confidence            99999999999  999999888765   347799999976

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-52  Score=411.00  Aligned_cols=369  Identities=20%  Similarity=0.252  Sum_probs=305.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +++.+.|.++++++|+++|+.+.  +..+||.||.++++++|+.|.+.| .+|++|+|+++|++++++++|||+++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   77 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTC   77 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            46889999999999999999986  489999999999999999999887 489999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++.++.+++..+++.+++++++++......+.......+.+  +                .+.+......  .....
T Consensus        78 v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~--~~~~~  137 (487)
T PRK07638         78 VPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEI--D----------------EWKRMIEKYL--PTYAP  137 (487)
T ss_pred             EecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEe--h----------------hhhhhhhhcc--ccccc
Confidence            99999999999999999999999999986655443222111111  1                1111111111  11112


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      .....+++++|+|||||||.||+|.++|+++...+........+.  .+|+++...|++|..++ ..++.++..|+++++
T Consensus       138 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~--~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~  214 (487)
T PRK07638        138 IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMK--REDSVLIAGTLVHSLFL-YGAISTLYVGQTVHL  214 (487)
T ss_pred             cccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcC--CCCEEEEeecchHHHHH-HHHHHHHccCcEEEE
Confidence            222356789999999999999999999999988876555444443  33999999999999877 478889999999999


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccc
Q 013850          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  346 (435)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE  346 (435)
                      .+.+++..+++.++++++|++.++|+++..|.+...    ...+.+.++++|++++.++.+++++.++++++++.||+||
T Consensus       215 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE  290 (487)
T PRK07638        215 MRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASE  290 (487)
T ss_pred             cCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCc
Confidence            999999999999999999999999999999988632    2345566778889999999999999998899999999999


Q ss_pred             ccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcc
Q 013850          347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSF  426 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~  426 (435)
                      ++.+..... .....+.+++|.|+++++++|+| ++|.++++|+.|||+++|+.++.|  ||++++.+.+.+    .+||
T Consensus       291 ~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~----~~g~  362 (487)
T PRK07638        291 LSFVTALVD-EESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMG--YIIGGVLARELN----ADGW  362 (487)
T ss_pred             cCceEEecc-cccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceee--ecCCHHHHhhhc----cCCc
Confidence            987665443 22245678999999999999999 589999999999999999999999  999998876654    4789


Q ss_pred             eecCCCC
Q 013850          427 IRGKDQQ  433 (435)
Q Consensus       427 ~~tgD~~  433 (435)
                      |+|||++
T Consensus       363 ~~TGDl~  369 (487)
T PRK07638        363 MTVRDVG  369 (487)
T ss_pred             EecCccE
Confidence            9999986

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-53  Score=430.15  Aligned_cols=367  Identities=22%  Similarity=0.302  Sum_probs=300.9

Q ss_pred             CchHHHHHhhccc--CCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           27 FSMVHFLFRNSAS--YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        27 ~tl~~~l~~~~~~--~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      .|+.++|.++++.  +|+++|+++.   ..+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~   80 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA---DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGV   80 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec---CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            4788999888875  7999999864   4799999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCC
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (435)
                      +++|++|.++.+++.++++.++++++|++......+....    +.                   .....+.........
T Consensus        81 ~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~  137 (705)
T PRK06060         81 MAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR----VA-------------------EAAELMSEAARVAPG  137 (705)
T ss_pred             EEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc----cc-------------------hhhhhhhhccccCCC
Confidence            9999999999999999999999999999876544332110    00                   001111110000011


Q ss_pred             CCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHh-hhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       185 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                      ......++++++|+|||||||.||+|.++|+++.+.+..... ...+  ...+++++..|++|.+++...++.++..|++
T Consensus       138 ~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~  215 (705)
T PRK06060        138 GYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRL--TPEDTGLCSARMYFAYGLGNSVWFPLATGGS  215 (705)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCC--CCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence            112345789999999999999999999999999887654432 2333  2338999999999998886678889999999


Q ss_pred             EEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          264 VVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       264 i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +++.+ .+++..++..++++++|+++++|+++..|++...  ...+++||.+++||+++++++.+++.+.++++++++.|
T Consensus       216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y  293 (705)
T PRK06060        216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI  293 (705)
T ss_pred             EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence            99986 5788999999999999999999999999987543  34578999999999999999999999999879999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccc
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  422 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~  422 (435)
                      |+||++.........  ..+.+++|+|+++++++|+| ++++++++|+.|||+++|++++.|  ||++++.+..      
T Consensus       294 G~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~G--Y~~~~~~~~~------  362 (705)
T PRK06060        294 GSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKG--YWNRPDSPVA------  362 (705)
T ss_pred             eccccCceEEeccCC--CCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhh--hhCCCccccc------
Confidence            999987655433222  34567899999999999999 578999999999999999999999  9999987532      


Q ss_pred             cCcceecCCCCC
Q 013850          423 TDSFIRGKDQQT  434 (435)
Q Consensus       423 ~~~~~~tgD~~~  434 (435)
                      .++||+|||+++
T Consensus       363 ~~~~~~TGDl~~  374 (705)
T PRK06060        363 NEGWLDTRDRVC  374 (705)
T ss_pred             CCCcEECCeeEE
Confidence            467999999764

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-52  Score=412.56  Aligned_cols=374  Identities=25%  Similarity=0.347  Sum_probs=312.8

Q ss_pred             chHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .+.+.|.++++.+|+++|+++.  ++.+||.||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   80 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA   80 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            4789999999999999999986  5899999999999999999975 799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC---cEEeccCCcccccccccccccccchhhhhhhcCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP---AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (435)
                      +|+++.++.+++..+++.+++++++++++..+.+......   ..++..                .++.+......    
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~----  140 (496)
T PRK06839         81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI----------------TSLKEIEDRKI----  140 (496)
T ss_pred             EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEe----------------cchHhhhccCC----
Confidence            9999999999999999999999999998776655443211   011110                11222221111    


Q ss_pred             CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                      .......++++++|+|||||||.||+|.++|.++............+  ..+|++++.+|++|.+|+...++.++..|++
T Consensus       141 ~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~  218 (496)
T PRK06839        141 DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDL--TMHDRSIVLLPLFHIGGIGLFAFPTLFAGGV  218 (496)
T ss_pred             CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCC--CCCCeEEEeeCCcchhhHHHHHHHHHhcCcE
Confidence            11223456899999999999999999999999987654443333333  3348999999999999997677889999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       264 i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      +++.+.+++..+++.++++++|++.++|++++.|++.......+++++|.+++||+++++++.+.+++.  ++++.+.||
T Consensus       219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG  296 (496)
T PRK06839        219 IIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFG  296 (496)
T ss_pred             EEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeecc
Confidence            999999999999999999999999999999999999877667788999999999999999999999887  599999999


Q ss_pred             cccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccccc
Q 013850          344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHT  423 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~  423 (435)
                      +||++..+............+++|+|+++++++|+|+ ++..++.|+.|||+++|+.++.|  ||++++.+...+    .
T Consensus       297 ~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~----~  369 (496)
T PRK06839        297 MTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDE-NKNKVEVGEVGELLIRGPNVMKE--YWNRPDATEETI----Q  369 (496)
T ss_pred             CCCCCcceEecccccccccCCCCcccCCCceEEEECC-CcCCCCCCCceEEEEECCCcchh--hcCChHHHHHHH----c
Confidence            9999876544433322456789999999999999995 66679999999999999999999  999999988766    4


Q ss_pred             CcceecCCCCC
Q 013850          424 DSFIRGKDQQT  434 (435)
Q Consensus       424 ~~~~~tgD~~~  434 (435)
                      +|||+|||+++
T Consensus       370 ~g~~~TGDl~~  380 (496)
T PRK06839        370 DGWLCTGDLAR  380 (496)
T ss_pred             CCCeeecceEE
Confidence            67888888763

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-52  Score=413.55  Aligned_cols=385  Identities=25%  Similarity=0.350  Sum_probs=320.3

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +|+.+.|.++++.+|+++|++..  ++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   94 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFL--GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA   94 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            78999999999999999999977  4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|+++..+.+++..+++.++++++++++.....+....     .+.++...+         .......++++++....  
T Consensus        95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--  163 (542)
T PRK07786         95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGG---------SSDDSVLGYEDLLAEAG--  163 (542)
T ss_pred             EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecC---------CCcccccCHHHHhhccC--
Confidence            99999999999999999999999999987766554332     122222211         11122345555554332  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      ..........+++++++|||||||.||+|.++|+++...+........+ ...++++++..|++|.+|+ ..++.++..|
T Consensus       164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G  241 (542)
T PRK07786        164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGA-DINSDVGFVGVPLFHIAGI-GSMLPGLLLG  241 (542)
T ss_pred             CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCC-CCCCceEEEecchHHHHHH-HHHHHHHHcc
Confidence            2223344566789999999999999999999999998877665444433 2234899999999999998 4888999999


Q ss_pred             cEEEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          262 NCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       262 ~~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      +++++.+  .+++..+++.++++++|.++++|+++..|.......... .++|.+++||+++++++.+.+++.|++.+++
T Consensus       242 ~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~  320 (542)
T PRK07786        242 APTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQIL  320 (542)
T ss_pred             CEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEE
Confidence            9999864  579999999999999999999999999998875544333 3799999999999999999999999889999


Q ss_pred             cCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      +.||+||++.+.............+++|+|++++.++|+| +++..++.|+.|||+++|+.++.|  |+++++.+++.| 
T Consensus       321 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~~f-  396 (542)
T PRK07786        321 AAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSG--YWNNPEATAEAF-  396 (542)
T ss_pred             eeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhh--hcCCHHHHHHHh-
Confidence            9999999987665443333234567899999999999999 578999999999999999999999  999999998877 


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                         .++||+|||+++
T Consensus       397 ---~~~~~~TGDl~~  408 (542)
T PRK07786        397 ---AGGWFHSGDLVR  408 (542)
T ss_pred             ---hCCcccccceEE
Confidence               367888888763

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-52  Score=408.54  Aligned_cols=368  Identities=28%  Similarity=0.360  Sum_probs=309.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +|+.+.|.++++++|+++|+++.+  +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEE--KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA   79 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence            589999999999999999999874  899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++..+.+++..++++++++.+++++.....+.....                       ..++++...... .....
T Consensus        80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~  135 (483)
T PRK03640         80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----------------------VKFAELMNGPKE-EAEIQ  135 (483)
T ss_pred             EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----------------------ccHHHHhhcccc-cCCCC
Confidence            999999999999999999999999998766544322110                       012222222111 12223


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++++|||||||.||+|.++|.++...+........+  ...|++++.+|++|+.++. .++.++..|+++++
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~  212 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGL--TEDDCWLAAVPIFHISGLS-ILMRSVIYGMRVVL  212 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCC--CcCcEEEEecCHHHHHHHH-HHHHHHhcCCEEEe
Confidence            44567899999999999999999999999998776555444433  3349999999999999985 67888999999999


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccc
Q 013850          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  346 (435)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE  346 (435)
                      .+.+++..+++.++++++|++.++|+++..|.+..... ....+||.+++||+++++.+++.+++.  ++++++.||+||
T Consensus       213 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE  289 (483)
T PRK03640        213 VEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTE  289 (483)
T ss_pred             cCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCc
Confidence            99999999999999999999999999999998764332 334689999999999999999998875  599999999999


Q ss_pred             ccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcc
Q 013850          347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSF  426 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~  426 (435)
                      ++..+..........+.+++|+|+++++++|.|+  +++++.|+.|||+++|++++.|  |+++++.+...|    .++|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~~~----~~~~  361 (483)
T PRK03640        290 TASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKG--YLNREDATRETF----QDGW  361 (483)
T ss_pred             ccccccccCcccccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhh--hcCCHHHHHHHH----hcCC
Confidence            8865554444433456789999999999999884  3789999999999999999999  999999998877    4678


Q ss_pred             eecCCCCC
Q 013850          427 IRGKDQQT  434 (435)
Q Consensus       427 ~~tgD~~~  434 (435)
                      |+|||+++
T Consensus       362 ~~tGDl~~  369 (483)
T PRK03640        362 FKTGDIGY  369 (483)
T ss_pred             eeccceEE
Confidence            99998753

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=7.7e-52  Score=412.66  Aligned_cols=387  Identities=24%  Similarity=0.331  Sum_probs=314.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++.+|+++|+++.+ ++.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~~-~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  101 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDNH-GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS  101 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcCC-CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            679999999999999999999763 5789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEcccc-----HHHHhh----cC-CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPEL-----WDKVKD----LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +|+++.++.+++..+++.++++++++++..     .+.+..    .. .+.++.....        ........+.++..
T Consensus       102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  173 (547)
T PRK06087        102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL--------APATSSLSLSQIIA  173 (547)
T ss_pred             eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCc--------CCCcCccCHHHHhc
Confidence            999999999999999999999999997532     222211    11 1112221110        01111224444443


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHh
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~  256 (435)
                      ...  .........++++++|+|||||||.||+|.++|.++............+.  .++++++.+|++|.+++...++.
T Consensus       174 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~~~~~  249 (547)
T PRK06087        174 DYE--PLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLT--WQDVFMMPAPLGHATGFLHGVTA  249 (547)
T ss_pred             cCC--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCC--CCCeEEEecchHHHHHHHHHHHH
Confidence            322  11123345678999999999999999999999999987766544444443  34999999999999998778899


Q ss_pred             hhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCC
Q 013850          257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (435)
Q Consensus       257 ~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~  336 (435)
                      ++..|+++++.+.+++..+++.++++++|++..+|+.+..+++.......+++++|.+++||+++++++.+.+.+.  ++
T Consensus       250 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~  327 (547)
T PRK06087        250 PFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GI  327 (547)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CC
Confidence            9999999999999999999999999999999999888877877665556678899999999999999999988775  59


Q ss_pred             eeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccc
Q 013850          337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF  416 (435)
Q Consensus       337 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~  416 (435)
                      ++++.||+||++.+..............++|.|+++++++++| +++.+++.|+.|||+++|+.++.|  ||++++.+..
T Consensus       328 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~  404 (547)
T PRK06087        328 KLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMG--YLDEPELTAR  404 (547)
T ss_pred             cEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEeccccccc--ccCCHHHHHH
Confidence            9999999999887665443222123456789999999999999 688999999999999999999999  9999999877


Q ss_pred             cccccccCcceecCCCCC
Q 013850          417 LWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       417 ~~~~~~~~~~~~tgD~~~  434 (435)
                      .+   .+++||+|||+++
T Consensus       405 ~~---~~~g~~~TGDl~~  419 (547)
T PRK06087        405 AL---DEEGWYYSGDLCR  419 (547)
T ss_pred             Hh---CCCCCcCcCceEE
Confidence            65   3578999999763

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.1e-52  Score=411.76  Aligned_cols=377  Identities=20%  Similarity=0.234  Sum_probs=306.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|.++++++|+++|+++.  +..+||.||.++++++|++|.++|+++||+|+++++|+++++++++||+++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  120 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE--LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADI  120 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEE
Confidence            68999999999999999999976  4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC----CcEEeccCCcccccccccccccccchhhhhhhcCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (435)
                      +|+++.++.+++.++++.++++++|++......+.....    ...++....          ......++.+.....  .
T Consensus       121 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~  188 (537)
T PRK13382        121 LLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTD----------EDHDLTVEVLIAAHA--G  188 (537)
T ss_pred             EecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecC----------CcccccHHHHhhccC--c
Confidence            999999999999999999999999999877655543211    111111110          001123333332211  1


Q ss_pred             CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                       . .....+++.++++|||||||.||+|.++|+++............+.  .+++++...|++|.+++. .++.++..|+
T Consensus       189 -~-~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g~~-~~~~~l~~g~  263 (537)
T PRK13382        189 -Q-RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWR--AEEPTVIVAPMFHAWGFS-QLVLAASLAC  263 (537)
T ss_pred             -C-CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCC--CCCeEEEecChHhhhHHH-HHHHHHhcCc
Confidence             1 1123468899999999999999999999988877765544444333  348999999999999984 7888899999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeec
Q 013850          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (435)
Q Consensus       263 ~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~  340 (435)
                      ++++...+++..+++.|+++++|++.++|+++..|++....  ...+++++|.+++||+++++++.+.|.+.++ .++++
T Consensus       264 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~  342 (537)
T PRK13382        264 TIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYN  342 (537)
T ss_pred             EEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcEEe
Confidence            99999899999999999999999999999999999876432  2345678999999999999999999999997 88999


Q ss_pred             CcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850          341 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  420 (435)
Q Consensus       341 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~  420 (435)
                      .||+||++.++.... ......++++|+|+++++++|+| +++++++.|+.|||+++|++++.|  |+  ++.+.. +  
T Consensus       343 ~YG~TE~~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~g--Y~--~~~~~~-~--  413 (537)
T PRK13382        343 NYNATEAGMIATATP-ADLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDG--YT--SGSTKD-F--  413 (537)
T ss_pred             cccccccCcceecCh-hHhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccC--cc--ccchhh-c--
Confidence            999999887655332 22234568999999999999999 578999999999999999999999  98  444443 2  


Q ss_pred             cccCcceecCCCCC
Q 013850          421 EHTDSFIRGKDQQT  434 (435)
Q Consensus       421 ~~~~~~~~tgD~~~  434 (435)
                        .+|||+|||+++
T Consensus       414 --~~g~~~TGDl~~  425 (537)
T PRK13382        414 --HDGFMASGDVGY  425 (537)
T ss_pred             --cCCCEeeCceEE
Confidence              257899999763

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-52  Score=407.74  Aligned_cols=381  Identities=25%  Similarity=0.329  Sum_probs=315.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +++.+.|.++++++|+++|+++.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYR--DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF   79 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            47889999999999999999886  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++..+.+++..+++.+++++++++++........ .....+....          .   ..+..+.....  .....
T Consensus        80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~----------~---~~~~~~~~~~~--~~~~~  143 (497)
T PRK06145         80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALE-TPKIVIDAAA----------Q---ADSRRLAQGGL--EIPPQ  143 (497)
T ss_pred             EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcc-cceEEecCcc----------c---chhHHHhccCC--CCCCC
Confidence            9999999999999999999999999987765443211 1111111100          0   00111110000  11122


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++++|||||||.||+|.++|+++...+.........  ..+++++...|++|.+++....+.++..|+++++
T Consensus       144 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~  221 (497)
T PRK06145        144 AAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL--TASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRI  221 (497)
T ss_pred             CCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC--CCCcEEEEecCchhHhHHHHHHHHHHhccCEEEE
Confidence            34567899999999999999999999999998665443333333  3338999999999999987667888999999999


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccc
Q 013850          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  346 (435)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE  346 (435)
                      .+.+++..+++.++++++|.+.++|+++..|+........+++++|.+++||+++++++.+.+.+.|++.++++.||+||
T Consensus       222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE  301 (497)
T PRK06145        222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTE  301 (497)
T ss_pred             CCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcc
Confidence            99899999999999999999999999999999876666667889999999999999999999999998899999999999


Q ss_pred             ccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcc
Q 013850          347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSF  426 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~  426 (435)
                      +++..+.........+.+++|+|++++++++.| ++++.++.|+.|||+++|++++.|  ||++++.+.+.|    .++|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~G--y~~~~~~~~~~~----~~~~  374 (497)
T PRK06145        302 TCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKG--YWKDPEKTAEAF----YGDW  374 (497)
T ss_pred             cCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhh--hcCChHHHHHHH----hCCC
Confidence            987655433322234567899999999999999 578899999999999999999999  999999998877    3678


Q ss_pred             eecCCCCC
Q 013850          427 IRGKDQQT  434 (435)
Q Consensus       427 ~~tgD~~~  434 (435)
                      |+|||+++
T Consensus       375 ~~TGDl~~  382 (497)
T PRK06145        375 FRSGDVGY  382 (497)
T ss_pred             eeccceEE
Confidence            99998763

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.4e-51  Score=408.83  Aligned_cols=383  Identities=21%  Similarity=0.267  Sum_probs=311.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++.+|+++|+++.  ++.+||.||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        23 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        23 KPLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            57999999999999999999986  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhhcC--CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +++++..+.+++..+++.++++.+++++...        ..+....  ....++....          . ....+...+.
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~  169 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT----------R-VEAELFLWLE  169 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCC----------C-CcchhhHHhh
Confidence            9999999999999999999999999986531        1121111  1111111110          0 0001111111


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~  255 (435)
                      ...  .........++++++|+|||||||.||+|.++|+++...+........+..  +|++++.+|++|.+++.. .++
T Consensus       170 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~P~~h~~~~~~~~~~  245 (527)
T TIGR02275       170 SPA--EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQ--QTRYLCALPAAHNYPLSSPGAL  245 (527)
T ss_pred             CcC--ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCc--CCEEEECCChHhhhhhhHHHHH
Confidence            111  112233557899999999999999999999999999888766555444433  499999999999998854 478


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......+++++|.+++||++++.++.+++.+.++ 
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-  324 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG-  324 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhC-
Confidence            8899999999998889999999999999999999999999998877666677899999999999999999999999996 


Q ss_pred             CeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccc
Q 013850          336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT  414 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~  414 (435)
                      +++++.||+||++..... .........+++|+|+ ++.+++|+| +++++++.|+.|||+++|+.++.|  ||++++.+
T Consensus       325 ~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~g--Y~~~~~~~  400 (527)
T TIGR02275       325 CQLQQVFGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRG--YYKAPEHN  400 (527)
T ss_pred             CeEEeeeccCccCccccC-CCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchh--hcCChhHh
Confidence            999999999996533322 1111133456899999 589999999 688999999999999999999999  99999998


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.+   +.++||+|||+++
T Consensus       401 ~~~~---~~dg~~~TGDl~~  417 (527)
T TIGR02275       401 AAAF---DAEGFYYTGDLVR  417 (527)
T ss_pred             Hhhc---CcCCCEEcCceEE
Confidence            8766   3578999999763

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.5e-51  Score=407.03  Aligned_cols=382  Identities=26%  Similarity=0.357  Sum_probs=317.3

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      +.++.+.+.+++ .+|+++|+.+.+ ++.+||.||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~~-~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~   79 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETPD-GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV   79 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeCC-CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            368999999999 999999998753 689999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC---cEEeccCCcccccccccccccccchhhhhhhcCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP---AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (435)
                      ++|+++.++.+++..+++.++++++++++...+.+......   ..+...+.        .   ....+.+......  .
T Consensus        80 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~--~  146 (504)
T PRK07514         80 FLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDA--------D---GTGSLLEAAAAAP--D  146 (504)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecC--------C---CcccHHHhhhhcC--c
Confidence            99999999999999999999999999998877665443211   10111110        0   0011111111111  2


Q ss_pred             CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                      ........++++++|+|||||||.||+|.++|+++...+........+..  +|++++.+|++|..++...++.++..|+
T Consensus       147 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~g~~~~~~~~l~~G~  224 (504)
T PRK07514        147 DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTP--DDVLIHALPIFHTHGLFVATNVALLAGA  224 (504)
T ss_pred             ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCC--ccEEEEecchHHHHHHHHHHHHHHhcCc
Confidence            22234456889999999999999999999999999988666554444433  4999999999999998777889999999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       263 ~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++++.+..++..+++.+.  ++|.+.++|.++..+++........++++|.+++||+++++++.+.|++.++ .++++.|
T Consensus       225 ~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y  301 (504)
T PRK07514        225 SMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILERY  301 (504)
T ss_pred             EEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC-Ccceeec
Confidence            999999899999999994  6999999999999999887666677889999999999999999999999986 8999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccc
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  422 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~  422 (435)
                      |+||++.........  ....+++|.|+++++++|+|++++.+++.|+.|||+++|++++.|  |+++++.+.+.|   .
T Consensus       302 G~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~g--y~~~~~~~~~~~---~  374 (504)
T PRK07514        302 GMTETNMNTSNPYDG--ERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKG--YWRMPEKTAEEF---R  374 (504)
T ss_pred             ccccccccccCCccc--cccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCcccc--ccCCchhhhhhc---c
Confidence            999987654432211  345678999999999999998899999999999999999999999  999999988876   3


Q ss_pred             cCcceecCCCCC
Q 013850          423 TDSFIRGKDQQT  434 (435)
Q Consensus       423 ~~~~~~tgD~~~  434 (435)
                      .++||+|||+++
T Consensus       375 ~~~~~~TGDl~~  386 (504)
T PRK07514        375 ADGFFITGDLGK  386 (504)
T ss_pred             cCCCeeecceEE
Confidence            467999999763

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-52  Score=422.31  Aligned_cols=383  Identities=23%  Similarity=0.310  Sum_probs=299.4

Q ss_pred             CCCchHHHHHhhcccCCCceeeeecC-----C--CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHH
Q 013850           25 PSFSMVHFLFRNSASYSSKLALIDAD-----S--DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (435)
Q Consensus        25 ~~~tl~~~l~~~~~~~p~~~a~~~~~-----~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~l   97 (435)
                      ++.|+.++|.++++.+|+++|++..+     .  .+.+||+||.++++++|+.|++. +++||+|+++++|++++++++|
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l   97 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF   97 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence            34799999999999999999998632     1  25799999999999999999886 8999999999999999999999


Q ss_pred             HHHHcCcEEEec-CCCCC--HHHHHHHHHhcCCeEEEEccccHHHHhhcCCC------cEEeccCCcccccccccccccc
Q 013850           98 GVIAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDLNLP------AVLLGSKDKVSSSGLISRSSKI  168 (435)
Q Consensus        98 A~~~~G~~~v~i-~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  168 (435)
                      ||+++|++++|+ ++..+  .+++.++++.++++++|++++..+.+......      ..++..+.              
T Consensus        98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  163 (631)
T PRK07769         98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA--------------  163 (631)
T ss_pred             HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc--------------
Confidence            999999999999 45554  57899999999999999998765544332100      01111110              


Q ss_pred             cchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHH
Q 013850          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (435)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~  248 (435)
                        +.+..   .  .........++++++|+|||||||.||+|.++|+++............+  ..++++++.+|++|.+
T Consensus       164 --~~~~~---~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        164 --VPDEV---G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG--QEGDRGVSWLPFFHDM  234 (631)
T ss_pred             --ccccc---c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCC--CCcceEEEeCCCcCch
Confidence              00000   0  1111224567899999999999999999999999998876655444433  3349999999999999


Q ss_pred             HHHHHHHhhhhcCcEEEecCC--C--CHHHHHHHHHhcCc---eEEEecHHHHHHHHhcc---c--ccCCCCcceeEEEe
Q 013850          249 GLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIEKYRV---TVWWVVPPIILALAKNS---L--VRKFDISSLKLVGS  316 (435)
Q Consensus       249 g~~~~~~~~l~~G~~i~~~~~--~--~~~~~~~~l~~~~~---t~~~~~P~~~~~l~~~~---~--~~~~~l~~lr~i~~  316 (435)
                      |+. .++.++..|+++++..+  +  ++..+++.+.++++   +.+.++|+++..+....   .  ....++++||.+++
T Consensus       235 gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~  313 (631)
T PRK07769        235 GLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLN  313 (631)
T ss_pred             hhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEe
Confidence            996 55666778998887753  4  88999999999886   78999999887776531   1  11457889999999


Q ss_pred             cCCCCcHHHHHHHHhhCC-----CCeeecCcCcccccccccccCCCCC-------------------------CcCCCCc
Q 013850          317 GAAPLGKELMEDCQKNIP-----GATIFQGYGMTETCAPISLENPLVG-------------------------VRRSGSA  366 (435)
Q Consensus       317 gG~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-------------------------~~~~~~~  366 (435)
                      ||+++++++.++|.+.|+     ...+++.||+||++..++.......                         .....++
T Consensus       314 gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~  393 (631)
T PRK07769        314 GSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSA  393 (631)
T ss_pred             ccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeC
Confidence            999999999999999873     2469999999998766554322110                         0112478


Q ss_pred             ccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc-c-------------cccCcceecCCC
Q 013850          367 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-C-------------EHTDSFIRGKDQ  432 (435)
Q Consensus       367 G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~-~-------------~~~~~~~~tgD~  432 (435)
                      |+|+++.+++|+|++++++++.|+.|||+++||+++.|  ||++++.|.+.|. +             ...++||+|||+
T Consensus       394 G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~G--Y~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDl  471 (631)
T PRK07769        394 GKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTG--YWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDY  471 (631)
T ss_pred             CCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCcccc--ccCChhHHHHHHhhhcccccccccccCcccCCCeeecccc
Confidence            99999999999998889999999999999999999999  9999999988772 1             123589999999


Q ss_pred             CC
Q 013850          433 QT  434 (435)
Q Consensus       433 ~~  434 (435)
                      ++
T Consensus       472 g~  473 (631)
T PRK07769        472 GV  473 (631)
T ss_pred             cc
Confidence            85

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=8.3e-52  Score=446.44  Aligned_cols=395  Identities=25%  Similarity=0.341  Sum_probs=319.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.+.+.++++++|+++|+++.. ++.+||+||.++++++|+.|++ ++++||+|+++++|+++++++++||+++|+++
T Consensus       615 ~~l~~~~~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~  692 (1146)
T PRK08633        615 PPLAEAWIDTAKRNWSRLAVADST-GGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP  692 (1146)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEcCC-CCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence            678999999999999999999752 5799999999999999999987 58999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhc------CCCcEEeccCCcccccccccccccccchhhhhhhcCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (435)
                      +|+++..+.+++.++++++++++++++++..+.+...      .....++..+...      ........+.+.......
T Consensus       693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  766 (1146)
T PRK08633        693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK------AKISKVDKLTALLAARLL  766 (1146)
T ss_pred             EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc------cccchhHHHHHHHHhccC
Confidence            9999999999999999999999999998777666421      1111111111000      000001112211111100


Q ss_pred             CC----CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHh
Q 013850          181 VT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (435)
Q Consensus       181 ~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~  256 (435)
                      +.    ........++++++|+|||||||.||+|.++|+++..............  .+|++++.+|++|.+++...++.
T Consensus       767 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~g~~~~~~~  844 (1146)
T PRK08633        767 PARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR--NDDVILSSLPFFHSFGLTVTLWL  844 (1146)
T ss_pred             CHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCC--CCCEEEEcCcHHHHHhHHHHHHH
Confidence            00    0002345689999999999999999999999999998876655544443  34999999999999999766889


Q ss_pred             hhhcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          257 QLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       257 ~l~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      ++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.+++++.++ 
T Consensus       845 ~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g-  923 (1146)
T PRK08633        845 PLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFG-  923 (1146)
T ss_pred             HHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhC-
Confidence            999999998875 578999999999999999999999999999876666678899999999999999999999999996 


Q ss_pred             CeeecCcCcccccccccccCCCC--------CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccc
Q 013850          336 ATIFQGYGMTETCAPISLENPLV--------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVY  407 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y  407 (435)
                      +++++.||+||+++++....++.        ...+.+++|+|+||++++|+|+++++++++|+.|||+++|++++.|  |
T Consensus       924 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g--Y 1001 (1146)
T PRK08633        924 IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKG--Y 1001 (1146)
T ss_pred             CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCcccc--c
Confidence            99999999999987766543221        1235678999999999999998899999999999999999999999  9


Q ss_pred             cCCcccccccccccccCcceecCCCCC
Q 013850          408 INFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |++++.+.+.+.-.+.++||+|||+++
T Consensus      1002 ~~~~~~t~~~~~~~~~~~~~~TGD~~~ 1028 (1146)
T PRK08633       1002 LGDPEKTAEVIKDIDGIGWYVTGDKGH 1028 (1146)
T ss_pred             cCCccchHHHhhcCCCCCeEECCCEEE
Confidence            999999988773122348999999864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.7e-52  Score=411.28  Aligned_cols=385  Identities=18%  Similarity=0.267  Sum_probs=298.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.+.|.++++++|+++|+++.+.+..+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus        14 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~   93 (540)
T PRK05857         14 STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIA   93 (540)
T ss_pred             cchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            58999999999999999999876545789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC---CCcEEeccCCcccccccccccccccchhhhhhhcCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (435)
                      +|+++.++.+++.++++.++++.+|+++..........   ....++..+..        ...  ..+.......   ..
T Consensus        94 v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~---~~  160 (540)
T PRK05857         94 VMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIA--------AVT--RESEHSLDAA---SL  160 (540)
T ss_pred             EecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecc--------ccc--cccccccccc---cc
Confidence            99999999999999999999999999986542221111   11111111100        000  0000000000   01


Q ss_pred             CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhh-hh-hccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~-~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .......++++++++|||||||.||+|.++|+++.++....... .. .....++++++.+|++|.+++. ..+.+++.|
T Consensus       161 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G  239 (540)
T PRK05857        161 AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHG  239 (540)
T ss_pred             ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhcc
Confidence            11234567899999999999999999999999998764332110 00 1122338999999999999986 678889999


Q ss_pred             cEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       262 ~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      +++++. ..++..+++.++++++|++.++|+++..|++.......+++++|.+++||++++....+ +.+.++ .++++.
T Consensus       240 ~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g-~~i~~~  316 (540)
T PRK05857        240 GLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATG-VRTAQV  316 (540)
T ss_pred             eeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhC-Ceeecc
Confidence            988764 56889999999999999999999999999987766667889999999999999987775 555665 999999


Q ss_pred             cCcccccccccccCCCCC---CcCCCCcccccCCcEEEEEeCCCCccC-----CCCCceeEEEeCCCccccccccCCccc
Q 013850          342 YGMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPL-----PPNQLGEIWVRGPNVTPGIVYINFFVF  413 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~-----~~g~~Gei~v~g~~~~~g~~y~~~~~~  413 (435)
                      ||+||++...........   ..+.+++|+|++|++++|+|++...++     +.|+.|||+++|++++.|  ||++++.
T Consensus       317 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~G--Y~~~~~~  394 (540)
T PRK05857        317 YGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLG--YWNNPER  394 (540)
T ss_pred             cCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhh--hhCCccc
Confidence            999998764433222111   224679999999999999996443333     347899999999999999  9999999


Q ss_pred             ccccccccccCcceecCCCCC
Q 013850          414 TLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       414 ~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.+.|    .+|||+|||+++
T Consensus       395 t~~~~----~~g~~~TGDlg~  411 (540)
T PRK05857        395 TAEVL----IDGWVNTGDLLE  411 (540)
T ss_pred             hhhhc----CCCceeccceEE
Confidence            98877    367999999864

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.5e-51  Score=407.92  Aligned_cols=397  Identities=24%  Similarity=0.392  Sum_probs=313.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .|+.+.|.++++++|+++|++..  ++.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++|||+++|++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v  101 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI  101 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            58999999999999999999875  47999999999999999999875 9999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC----CcEEecc-CC-cccccc--------------ccccc
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGS-KD-KVSSSG--------------LISRS  165 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~-~~-~~~~~~--------------~~~~~  165 (435)
                      ++|+++.++.+++..+++.++++++++++...+.+.....    ...+... .. ......              .....
T Consensus       102 ~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK12492        102 VVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHL  181 (562)
T ss_pred             EeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCC
Confidence            9999999999999999999999999998765444332211    1111000 00 000000              00001


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc--------cCCCcE
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV--------GELDHV  237 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--------~~~~d~  237 (435)
                      .....+++....... ....+.....+++++|+|||||||.||+|.++|+++...+..........        ....++
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (562)
T PRK12492        182 PQAVPFKQALRQGRG-LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEV  260 (562)
T ss_pred             cccccHHHHHhccCC-CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeE
Confidence            122334444332211 11223345678999999999999999999999999987765544333211        111267


Q ss_pred             EEecchHHHHHHHHHHHHhhhhcCcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEe
Q 013850          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (435)
Q Consensus       238 ~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~  316 (435)
                      +++.+|++|.+++...++..+..|...++. ..+++..+++.++++++|++.++|+++..|.++......+++++|.+++
T Consensus       261 ~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~  340 (562)
T PRK12492        261 MIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS  340 (562)
T ss_pred             EEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEe
Confidence            889999999999876677778888877655 4568999999999999999999999999999887666677889999999


Q ss_pred             cCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEE
Q 013850          317 GAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV  396 (435)
Q Consensus       317 gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v  396 (435)
                      ||+++++++.+.|.+.++ +++++.||+||+++++....... ..+.+++|+|+++++++|+| +++.++++|+.|||++
T Consensus       341 gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel~v  417 (562)
T PRK12492        341 GGTALVKATAERWEQLTG-CTIVEGYGLTETSPVASTNPYGE-LARLGTVGIPVPGTALKVID-DDGNELPLGERGELCI  417 (562)
T ss_pred             ccccCCHHHHHHHHHHhC-CceeeccCccccCceeeecCCcc-cccCCccceecCCCEEEEEC-CCCCCCCCCCceEEEE
Confidence            999999999999999886 99999999999887665443221 33567899999999999999 4889999999999999


Q ss_pred             eCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          397 RGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       397 ~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|+.++.|  ||++++.+.+.|   +.++||+|||+++
T Consensus       418 ~g~~~~~g--Y~~~~~~t~~~~---~~~g~~~TGD~g~  450 (562)
T PRK12492        418 KGPQVMKG--YWQQPEATAEAL---DAEGWFKTGDIAV  450 (562)
T ss_pred             eCCccccc--cccCchhhhhcc---cCCCceecCcEEE
Confidence            99999999  999999998876   2468999999763

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-51  Score=407.22  Aligned_cols=389  Identities=30%  Similarity=0.417  Sum_probs=327.6

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      +.++.++|.++++.+|+++|+.+.+  ..+||+||.+.++++|+.|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus         5 ~~~l~~~l~~~~~~~p~~~a~~~~~--~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~   82 (521)
T PRK06187          5 PLTIGRILRHGARKHPDKEAVYFDG--RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV   82 (521)
T ss_pred             cCCHHHHHHHHHHHCCCceEEEeCC--ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            3789999999999999999999874  67999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC-----CcEEeccCCcccccccccccccccchhhhhhhcCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (435)
                      ++|+++.++.+++..+++.+++++++++.+..+.+.....     +.+++..+....     ........+.+++.... 
T Consensus        83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-  156 (521)
T PRK06187         83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAAS-  156 (521)
T ss_pred             EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCC-
Confidence            9999999999999999999999999999887766655431     122222221100     11233455555554433 


Q ss_pred             CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (435)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~  260 (435)
                       .........++++++++|||||||.||+|.++|+++............+.  .++++++.+|++|.+++. ..+.++..
T Consensus       157 -~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~-~~~~~l~~  232 (521)
T PRK06187        157 -DTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLS--RDDVYLVIVPMFHVHAWG-LPYLALMA  232 (521)
T ss_pred             -ccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCC--CCCEEEEeCCchHHhhHH-HHHHHHHh
Confidence             23334556788999999999999999999999999988776655544443  339999999999999986 44559999


Q ss_pred             CcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeec
Q 013850          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (435)
Q Consensus       261 G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~  340 (435)
                      |+++++.+.+++..+++.++++++|.+.++|+++..|.+........++++|.+++||++++.++.+.+.+.++ +++++
T Consensus       233 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~  311 (521)
T PRK06187        233 GAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFG-IDLVQ  311 (521)
T ss_pred             CCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhC-cchhe
Confidence            99999998889999999999999999999999999999988776778899999999999999999999999994 99999


Q ss_pred             CcCcccccccccccCCCCC----CcCCCCcccccCCcEEEEEeCCCCccCCC--CCceeEEEeCCCccccccccCCcccc
Q 013850          341 GYGMTETCAPISLENPLVG----VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIVYINFFVFT  414 (435)
Q Consensus       341 ~yG~tE~~~~~~~~~~~~~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gei~v~g~~~~~g~~y~~~~~~~  414 (435)
                      .||+||+++++........    .....++|.|+++++++|+|+ ++.+++.  |+.|||+++|+.++.|  |+++++.+
T Consensus       312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~g~~Gel~v~~~~~~~~--y~~~~~~~  388 (521)
T PRK06187        312 GYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDD-DGDELPPDGGEVGEIIVRGPWLMQG--YWNRPEAT  388 (521)
T ss_pred             eeccCccCcccccCCcccccccccccCCccccccCCeEEEEECC-CCCCCCCCCCCeeEEEEECcchhhh--hcCCHHHH
Confidence            9999999877666544321    126789999999999999995 6788888  9999999999999999  99999988


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.|    .++||+|||+++
T Consensus       389 ~~~~----~~~~~~tGD~~~  404 (521)
T PRK06187        389 AETI----DGGWLHTGDVGY  404 (521)
T ss_pred             HHHh----hCCceeccceEE
Confidence            8877    356999999764

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-51  Score=408.88  Aligned_cols=392  Identities=24%  Similarity=0.345  Sum_probs=318.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.+.++++|+++|++..+.++.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   97 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL   97 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence            58999999999999999999987656899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccH-----HHHhhcCCC-----------------cEEeccCCcccccccccc
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDLNLP-----------------AVLLGSKDKVSSSGLISR  164 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~  164 (435)
                      +|+++.++.+++..+++.++++++|+++...     ..+......                 ..++....        ..
T Consensus        98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  169 (558)
T PRK12583         98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP--------AP  169 (558)
T ss_pred             EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC--------CC
Confidence            9999999999999999999999999986432     111111000                 00111110        01


Q ss_pred             cccccchhhhhhhcCCC----CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEe
Q 013850          165 SSKIVSFHDLIELSGSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC  240 (435)
Q Consensus       165 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~  240 (435)
                      ......+++........    .........++++++++|||||||.||+|.++|+++...+........+..  +|++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~~~  247 (558)
T PRK12583        170 PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE--HDRLCV  247 (558)
T ss_pred             CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC--CCeEEE
Confidence            11223344333222110    111123446788999999999999999999999999887666555444433  399999


Q ss_pred             cchHHHHHHHHHHHHhhhhcCcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCC
Q 013850          241 VLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA  319 (435)
Q Consensus       241 ~~~l~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~  319 (435)
                      ..|++|.+|....++.++..|+++++. ..+++..+++.++++++|++.++|+++..++........+++++|.+++||+
T Consensus       248 ~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~  327 (558)
T PRK12583        248 PVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGA  327 (558)
T ss_pred             ecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCC
Confidence            999999999988899999999999975 4678999999999999999999999999988876666677899999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCC-CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC
Q 013850          320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG  398 (435)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g  398 (435)
                      ++++++.+++.+.++...+++.||+||++.+........ ...+..++|+|++++.++|+|++ +++++.|+.|||+++|
T Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g  406 (558)
T PRK12583        328 PCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRG  406 (558)
T ss_pred             CCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEe
Confidence            999999999999998678999999999998766543221 13356789999999999999965 8999999999999999


Q ss_pred             CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 ~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.++.|  |+++++.+...+   ..++||+|||+++
T Consensus       407 ~~~~~g--y~~~~~~~~~~~---~~~~~~~TGDl~~  437 (558)
T PRK12583        407 YSVMKG--YWNNPEATAESI---DEDGWMHTGDLAT  437 (558)
T ss_pred             Cccchh--hcCChHHHHhhc---CCCCCeeccceEE
Confidence            999999  999999987755   2467999999763

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.2e-51  Score=406.36  Aligned_cols=385  Identities=22%  Similarity=0.268  Sum_probs=311.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      .|+.+.+.++++.+|+++|++..+    .+..+||.||.++++++|++|++.|+++||+|+++++|+++++++++||+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~  101 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI  101 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            689999999999999999998521    1368999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH-----HHHhhc----C-CCcEEeccCCcccccccccccccccchh
Q 013850          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFH  172 (435)
Q Consensus       103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (435)
                      |++++|+++.++.+++.++++.++++++++++...     ......    . ...+++....            ....++
T Consensus       102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  169 (538)
T TIGR03208       102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD------------GDDSFD  169 (538)
T ss_pred             CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC------------CCcCHH
Confidence            99999999999999999999999999999987542     111111    1 1122221110            011222


Q ss_pred             hhhhhcCC--CCC----CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHH
Q 013850          173 DLIELSGS--VTD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       173 ~~~~~~~~--~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~  246 (435)
                      .++.....  ...    .......++++++|+|||||||.||+|.++|+++...+........+.  .+|++++.+|++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h  247 (538)
T TIGR03208       170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELG--GGDVILMASPMAH  247 (538)
T ss_pred             HHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCC--CCCeEEEeCCchh
Confidence            22211100  000    112345679999999999999999999999999988876655544443  3499999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHH
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~  326 (435)
                      ..++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.
T Consensus       248 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~  327 (538)
T TIGR03208       248 QTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILV  327 (538)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHH
Confidence            99987788999999999999988999999999999999999999999999887654455678899999999999999999


Q ss_pred             HHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCcccccc
Q 013850          327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV  406 (435)
Q Consensus       327 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~  406 (435)
                      +++.+.++ +++++.||+||++.+..............++|+|+++++++|+| +++.+++.|+.|||+++|+.++.|  
T Consensus       328 ~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~g--  403 (538)
T TIGR03208       328 ERAWELLG-ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGG--  403 (538)
T ss_pred             HHHHHHcC-CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCccccc--
Confidence            99999986 99999999999887665433221122345789999999999999 578999999999999999999999  


Q ss_pred             ccCCcccccccccccccCcceecCCCCC
Q 013850          407 YINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       407 y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ||++++.+..     ..++||+|||+++
T Consensus       404 y~~~~~~~~~-----~~~~~~~TGD~~~  426 (538)
T TIGR03208       404 YLKRPHLNST-----DAEGWFDTGDLAF  426 (538)
T ss_pred             ccCCcccccc-----cCCCceeccceEE
Confidence            9999988753     2478999999863

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-51  Score=415.18  Aligned_cols=398  Identities=22%  Similarity=0.271  Sum_probs=304.6

Q ss_pred             Cch-HHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           27 FSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        27 ~tl-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      .|+ .++|.++++.+|+++|++...    ..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  131 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR  131 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            555 455667788899999998632    236899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH---------HHHhh----c--CCCcEEeccCCcccccccccccc
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKD----L--NLPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +|++++|+++.++.+++..+++.++++++|+++...         +.+..    .  ....+++...... ..  .....
T Consensus       132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~~--~~~~~  208 (629)
T PRK10524        132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLA-PM--ARVAG  208 (629)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCC-Cc--CcccC
Confidence            999999999999999999999999999999976421         11111    1  1122222211100 00  00011


Q ss_pred             cccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHh-hhhhccCCCcEEEecchHH
Q 013850          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~l~~~~l~  245 (435)
                      ....+.++...... ...+.....++++++|+|||||||.||+|.++|.++......... ...+  ..+|++++..+++
T Consensus       209 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~  285 (629)
T PRK10524        209 RDVDYATLRAQHLG-ARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGG--KAGETFFCASDIG  285 (629)
T ss_pred             CcccHHHHHhcCCC-CCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCC--CCCCEEEEcCCCC
Confidence            12334444332211 112223356789999999999999999999999997654332222 2222  3349999999999


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecC----CCCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCC
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAA  319 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~  319 (435)
                      |.++....++.++..|+++++.+    .+++..+++.++++++|++.++|++++.|.+...  ....++++||.+++||+
T Consensus       286 ~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge  365 (629)
T PRK10524        286 WVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGE  365 (629)
T ss_pred             eeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCC
Confidence            99887667899999999999875    3478999999999999999999999999887643  23457889999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeecCcCcccccccccccCC--CCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEe
Q 013850          320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP--LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR  397 (435)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~  397 (435)
                      ++++++.+++.+.++ +++++.||+||++..+.....  .....+.+++|+|++|++++|+|+++|++++.|+.|||+++
T Consensus       366 ~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~  444 (629)
T PRK10524        366 PLDEPTASWISEALG-VPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIE  444 (629)
T ss_pred             CCCHHHHHHHHHhcC-CCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEc
Confidence            999999999999997 999999999999854332222  11134568999999999999999658999999999999999


Q ss_pred             CC---CccccccccCCcccccccc-cccccCcceecCCCCC
Q 013850          398 GP---NVTPGIVYINFFVFTLFLW-GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       398 g~---~~~~g~~y~~~~~~~~~~~-~~~~~~~~~~tgD~~~  434 (435)
                      ||   +++.|  ||++++.+.+.+ ..+ .++||+|||+++
T Consensus       445 gp~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~TGDl~~  482 (629)
T PRK10524        445 GPLPPGCMQT--VWGDDDRFVKTYWSLF-GRQVYSTFDWGI  482 (629)
T ss_pred             CCCChhhcCC--ccCChHHHHHhhhccC-CCcEEEcCCcEE
Confidence            98   57889  999998766543 111 457999999863

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-51  Score=407.34  Aligned_cols=389  Identities=21%  Similarity=0.309  Sum_probs=306.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++++|+++|+++.+..+.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        16 ~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   95 (534)
T PRK05852         16 PRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVV   95 (534)
T ss_pred             ccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEE
Confidence            68999999999999999999886545689999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC---CcEEeccCCcccccccccccccccchhhhhhhcCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (435)
                      +|+++.++.+++.++++.++++++|++............   ...+......       .......... ..........
T Consensus        96 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~  167 (534)
T PRK05852         96 VPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDS-------GPSGGTLSVH-LDAATEPTPA  167 (534)
T ss_pred             eecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccc-------cccccccccc-cccccCCCcc
Confidence            999999999999999999999999998653322111110   0001110000       0000000000 0000000001


Q ss_pred             CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                      .......+++.++|+|||||||.||+|.++|+++...+........+.  .+|++++..|++|.+++...++.++..|++
T Consensus       168 ~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~  245 (534)
T PRK05852        168 TSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLS--PRDATVAVMPLYHGHGLIAALLATLASGGA  245 (534)
T ss_pred             ccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCC--CcceEEEecCcchhHHHHHHHHHHHhcCCe
Confidence            111122356789999999999999999999999988877665545443  349999999999999998789999999999


Q ss_pred             EEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc--CCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          264 VVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       264 i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      +++..  .+++..+++.++++++|.+.++|+++..|.+.....  ...++++|.+.++|+++++++.+.+.+.++ .+++
T Consensus       246 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~  324 (534)
T PRK05852        246 VLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFA-APVV  324 (534)
T ss_pred             EEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhC-CChh
Confidence            99864  478999999999999999999999999998865432  345789999999999999999999999996 9999


Q ss_pred             cCcCcccccccccccCCCC------CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccc
Q 013850          340 QGYGMTETCAPISLENPLV------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  413 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~  413 (435)
                      +.||+||++..++......      .....+..|. .+|++++|+| ++++++++|+.|||+++|+.++.|  ||++++.
T Consensus       325 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~g--Y~~~~~~  400 (534)
T PRK05852        325 CAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRG--YLGDPTI  400 (534)
T ss_pred             hccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccch--hcCCccc
Confidence            9999999987665432211      0112334444 7999999999 578999999999999999999999  9999999


Q ss_pred             ccccccccccCcceecCCCCC
Q 013850          414 TLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       414 ~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.+.|    .++||+|||+++
T Consensus       401 t~~~~----~~g~~~TGD~~~  417 (534)
T PRK05852        401 TAANF----TDGWLRTGDLGS  417 (534)
T ss_pred             chhhh----cCCCcccCceEE
Confidence            99887    367999999763

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.1e-52  Score=481.99  Aligned_cols=377  Identities=21%  Similarity=0.267  Sum_probs=319.1

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.+  +.+||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus      3095 ~~~~~l~~~~a~~~p~~~Av~~~~--~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467       3095 RLVHQLIEAQVARTPEAPALVFGD--QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred             ccHHHHHHHHHHhCCCcceEeeCC--cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence            689999999999999999999974  899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|++|.++.+++.++++.++++++|++....+.+........+....                    ...... ....+.
T Consensus      3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~-~~~~~~ 3231 (3956)
T PRK12467       3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDR--------------------LDLNGY-SENNPS 3231 (3956)
T ss_pred             ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecc--------------------hhhccc-CCCCCc
Confidence            99999999999999999999999999987655543221111111100                    000000 022233


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||||+++|+++.+.+.+......+..  +|+++...|++|..+.. .++.+|..|+++++
T Consensus      3232 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~i 3308 (3956)
T PRK12467       3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDA--NDRVLLFMSFSFDGAQE-RFLWTLICGGCLVV 3308 (3956)
T ss_pred             ccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCc--CCEEEEecCccHhHHHH-HHHHHHhCCCEEEE
Confidence            4567899999999999999999999999999998877666655543  39999999999998874 88999999999999


Q ss_pred             cCC--CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850          267 MGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  344 (435)
Q Consensus       267 ~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~  344 (435)
                      .+.  +++..+++.++++++|++.++|+++..|++...  ..++++||.+++|||++++++.++|++.+++++++|.||+
T Consensus      3309 ~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~ 3386 (3956)
T PRK12467       3309 RDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGP 3386 (3956)
T ss_pred             CCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCccc
Confidence            875  689999999999999999999999999987542  3467899999999999999999999999988999999999


Q ss_pred             ccccccccccCCCCC---CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc---
Q 013850          345 TETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW---  418 (435)
Q Consensus       345 tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~---  418 (435)
                      ||++..++.......   .....++|+|++|++++|+| +++++++.|++|||+|+|++++.|  ||++|+.|.++|   
T Consensus      3387 TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~G--Y~~~~~~T~~~F~~~ 3463 (3956)
T PRK12467       3387 TEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARG--YHQRPSLTAERFVAD 3463 (3956)
T ss_pred             chhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhh--ccCCcccchhhccCC
Confidence            999876654322211   22346899999999999999 689999999999999999999999  999999999998   


Q ss_pred             cc-cccCcceecCCCCC
Q 013850          419 GC-EHTDSFIRGKDQQT  434 (435)
Q Consensus       419 ~~-~~~~~~~~tgD~~~  434 (435)
                      +| ...++||||||+++
T Consensus      3464 p~~~~g~r~yrTGDl~~ 3480 (3956)
T PRK12467       3464 PFSGSGGRLYRTGDLAR 3480 (3956)
T ss_pred             CCCCCCceeeccchhhe
Confidence            33 23456999999985

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-51  Score=415.22  Aligned_cols=381  Identities=22%  Similarity=0.314  Sum_probs=293.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecC-----CC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      .|+.+++.++++++|+++|++..+     .+  +.+||.||.++++++|++|.+. +++||+|+++++|++++++++|||
T Consensus        34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~  112 (612)
T PRK12476         34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA  112 (612)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence            799999999999999999998642     12  4899999999999999999886 999999999999999999999999


Q ss_pred             HHcCcEEEec-CCCCC--HHHHHHHHHhcCCeEEEEccccHHHHhhcCC-------CcEEeccCCccccccccccccccc
Q 013850          100 IAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDLNL-------PAVLLGSKDKVSSSGLISRSSKIV  169 (435)
Q Consensus       100 ~~~G~~~v~i-~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  169 (435)
                      +++|++++|+ ++.++  .+++.++++.++++++|+++...+.+.....       ..++.. +.               
T Consensus       113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~---------------  176 (612)
T PRK12476        113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAI-DA---------------  176 (612)
T ss_pred             HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEe-cc---------------
Confidence            9999999999 57766  7899999999999999999876655433210       111111 10               


Q ss_pred             chhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHH
Q 013850          170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG  249 (435)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g  249 (435)
                          +.....  .........++++++|+|||||||.||||.++|+++.+.+......... ...++++++.+|++|.+|
T Consensus       177 ----~~~~~~--~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~l~~~Pl~h~~g  249 (612)
T PRK12476        177 ----IPDSAG--ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDL-LDRNTHGVSWLPLYHDMG  249 (612)
T ss_pred             ----cccccc--ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhcc-CCCCceEEEeCCcccccc
Confidence                000000  1111233467899999999999999999999999998775554433331 123489999999999999


Q ss_pred             HHHHHHhhhhcCcEEEecC-CC--CHHHHHHHHH--hcCceEEEecHHHHHHHHhccc----ccCCCCcceeEEEecCCC
Q 013850          250 LSVILYDQLQKGNCVVSMG-KF--DIEMALRAIE--KYRVTVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGAAP  320 (435)
Q Consensus       250 ~~~~~~~~l~~G~~i~~~~-~~--~~~~~~~~l~--~~~~t~~~~~P~~~~~l~~~~~----~~~~~l~~lr~i~~gG~~  320 (435)
                      +...++.++..|.++++.+ .+  ++..+++.++  +++++.+..+|+++..++....    ....++++|| +++||++
T Consensus       250 ~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~  328 (612)
T PRK12476        250 LSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEP  328 (612)
T ss_pred             hHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccC
Confidence            9644455555554444443 23  8899999995  4899999999999888776421    1244688999 9999999


Q ss_pred             CcHHHHHHHHhhCC-----CCeeecCcCcccccccccccCCCCC-------------------------CcCCCCccccc
Q 013850          321 LGKELMEDCQKNIP-----GATIFQGYGMTETCAPISLENPLVG-------------------------VRRSGSAGTLV  370 (435)
Q Consensus       321 l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-------------------------~~~~~~~G~~~  370 (435)
                      +++++.++|++.|+     ..++++.||+||++..++...+...                         ..+.+++|+|+
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~  408 (612)
T PRK12476        329 VSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVA  408 (612)
T ss_pred             CCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcC
Confidence            99999999999873     2459999999998765543322110                         01235789999


Q ss_pred             CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc-----cc-c---------cCcceecCCCCC
Q 013850          371 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-----CE-H---------TDSFIRGKDQQT  434 (435)
Q Consensus       371 ~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~-----~~-~---------~~~~~~tgD~~~  434 (435)
                      +|++++|+|++++++++.|+.|||+++|++++.|  ||++++.|.+.|.     .. +         .++||+|||++.
T Consensus       409 ~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~  485 (612)
T PRK12476        409 RSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRG--YWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGV  485 (612)
T ss_pred             CCCEEEEEeCCCCcCCCCCCEEEEEEcCCccccc--ccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccce
Confidence            9999999997659999999999999999999999  9999999988772     00 0         235999999985

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.9e-50  Score=401.37  Aligned_cols=381  Identities=24%  Similarity=0.360  Sum_probs=312.3

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++.+|+++|+++.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus        21 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~   98 (542)
T PRK06155         21 RTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA   98 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence            78999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC-----CcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|+++.++.+++..+++.+++++++++.+....+.....     ...+...... ..    .....+ ...++... .  
T Consensus        99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~-~~~~~~~~-~--  169 (542)
T PRK06155         99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPA-SV----SVPAGW-STAPLPPL-D--  169 (542)
T ss_pred             EEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcc-cc----cccccc-chhhhccc-C--
Confidence            999999999999999999999999999887766654321     1122111100 00    000000 00011100 0  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .........++++++|+|||||||.||+|.++|+++............+.  ..+++++..|++|..++. .++.++..|
T Consensus       170 ~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~~~~-~~~~~l~~G  246 (542)
T PRK06155        170 APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIG--ADDVLYTTLPLFHTNALN-AFFQALLAG  246 (542)
T ss_pred             CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCC--CCCEEEEecCHHHHHHHH-HHHHHHHcC
Confidence            11122345678999999999999999999999999987755544444443  339999999999999995 678999999


Q ss_pred             cEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       262 ~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      +++++.+.+++..+++.|+++++|++.++|+++..|.+.........+++|.++.||  +++.+.+.+++.++ .++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~~  323 (542)
T PRK06155        247 ATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFG-VDLLDG  323 (542)
T ss_pred             ceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcC-CCEEee
Confidence            999999999999999999999999999999999999987766666778899887666  57899999999996 999999


Q ss_pred             cCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC---CccccccccCCcccccccc
Q 013850          342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP---NVTPGIVYINFFVFTLFLW  418 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~---~~~~g~~y~~~~~~~~~~~  418 (435)
                      ||+||++.++.... .  ..+.+++|.+.++++++|+| +++++++.|+.|||+++|+   +++.|  |+++++.+.+.|
T Consensus       324 YG~tE~~~~~~~~~-~--~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~G--Y~~~~~~~~~~~  397 (542)
T PRK06155        324 YGSTETNFVIAVTH-G--SQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATG--YFGMPEKTVEAW  397 (542)
T ss_pred             ecccccCccccCCC-C--CCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchh--hcCCHHHHHHhh
Confidence            99999987765432 2  34678899999999999999 5799999999999999998   69999  999999988876


Q ss_pred             cccccCcceecCCCCC
Q 013850          419 GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       419 ~~~~~~~~~~tgD~~~  434 (435)
                          .++||+|||+++
T Consensus       398 ----~~~~~~TGD~~~  409 (542)
T PRK06155        398 ----RNLWFHTGDRVV  409 (542)
T ss_pred             ----cCCcEeccceEE
Confidence                367888888763

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.5e-51  Score=399.77  Aligned_cols=366  Identities=21%  Similarity=0.351  Sum_probs=299.6

Q ss_pred             HhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCC
Q 013850           34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY  113 (435)
Q Consensus        34 ~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~  113 (435)
                      ..+++.+|+++|+.+...+..+||.||.+.++++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+++..
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            45678899999998754468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCC
Q 013850          114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTD  193 (435)
Q Consensus       114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (435)
                      +.+++..+++.++++++|+++......      ..                   ...++++................+++
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAGR------TD-------------------VEDLAAFIASADALEPADTPSIPPER  136 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhccc------cc-------------------ccchhhhhhhccccccccCCCCCCCC
Confidence            999999999999999999986543210      00                   01111111111100111123345688


Q ss_pred             EEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHH
Q 013850          194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIE  273 (435)
Q Consensus       194 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~  273 (435)
                      +++++|||||||.||+|.++|+++...+.........  ..+|++++.+|++|.+++...+..++..|+++++.+.+++.
T Consensus       137 ~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  214 (488)
T PRK09088        137 VSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRV--DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPK  214 (488)
T ss_pred             ceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCC--CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHH
Confidence            9999999999999999999999998776554443333  33499999999999999987788999999999999888999


Q ss_pred             HHHHHHHh--cCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccc
Q 013850          274 MALRAIEK--YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI  351 (435)
Q Consensus       274 ~~~~~l~~--~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~  351 (435)
                      ..+..+.+  +++|++.++|.++..|.+........+++||.+++||++++.+..+.+.+.  ++++++.||+||++.+.
T Consensus       215 ~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~  292 (488)
T PRK09088        215 RTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVF  292 (488)
T ss_pred             HHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeeccccccccc
Confidence            99998864  789999999999999988765555678899999999999999998888765  59999999999998755


Q ss_pred             cccCC-CCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecC
Q 013850          352 SLENP-LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGK  430 (435)
Q Consensus       352 ~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tg  430 (435)
                      ..... .....+.+++|.|+++++++|+| +++..++.|+.|||+++|++++.|  |+++++.+.+.+   +.++||+||
T Consensus       293 ~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--Y~~~~~~~~~~~---~~~g~~~TG  366 (488)
T PRK09088        293 GMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPG--YWRRPQATARAF---TGDGWFRTG  366 (488)
T ss_pred             ccCCCcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchh--hcCChhhhhhhh---cCCCCeeec
Confidence            33211 11133567899999999999999 578999999999999999999999  999999988765   346899999


Q ss_pred             CCCC
Q 013850          431 DQQT  434 (435)
Q Consensus       431 D~~~  434 (435)
                      |+++
T Consensus       367 Dl~~  370 (488)
T PRK09088        367 DIAR  370 (488)
T ss_pred             ceEE
Confidence            9764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.9e-50  Score=400.19  Aligned_cols=390  Identities=24%  Similarity=0.342  Sum_probs=316.5

Q ss_pred             chHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEE
Q 013850           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v  107 (435)
                      ++.+.|.+.++++|+++|+.+.  ++.+||+||.+++.++|+.|++.|+.+||+|+++++|++++++++|||+++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v   78 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFV   78 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEE
Confidence            4678899999999999999987  47999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC-----cEEeccCCcccccccccccccccchhhhhhhcCCCC
Q 013850          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP-----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (435)
Q Consensus       108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (435)
                      |+++.++.+++..+++.++++++++++.....+......     .++...+....    .........|+++.....   
T Consensus        79 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---  151 (515)
T TIGR03098        79 PINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHA----SEGGGESPSWPKLLALGD---  151 (515)
T ss_pred             eCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccc----cCCccccccHHHhhcccc---
Confidence            999999999999999999999999998766554332211     12111111000    011122334555443322   


Q ss_pred             CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                      .........+++++|+|||||||.||+|.+||+++...+........+  ..+|++++.+|++|.+++. .++.++..|+
T Consensus       152 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~  228 (515)
T TIGR03098       152 ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLEN--RPDDRLLAVLPLSFDYGFN-QLTTAFYVGA  228 (515)
T ss_pred             ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCC--CcccEEEEECchhhHhHHH-HHHHHHHcCC
Confidence            112233456889999999999999999999999998877665544433  3349999999999999985 7899999999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       263 ~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++++.+.+++..+++.++++++|++.++|+++..|.+... ....++++|.+++||+++++++.+.+++.+++..+++.|
T Consensus       229 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~Y  307 (515)
T TIGR03098       229 TVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMY  307 (515)
T ss_pred             EEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeee
Confidence            9999988999999999999999999999999999987532 224678999999999999999999999999779999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc---
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG---  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~---  419 (435)
                      |+||++...... ......+++++|+|+++++++|+| +++++++.|+.|||+++|+.++.|  ||++++.+...+.   
T Consensus       308 G~tE~~~~~~~~-~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~g--y~~~~~~~~~~~~~~~  383 (515)
T TIGR03098       308 GLTEAFRSTYLP-PEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMG--YWNDPEKTAERFRPLP  383 (515)
T ss_pred             ccccccceEecc-cccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhcc--ccCCchhhhhhhhccC
Confidence            999987644332 222245678999999999999999 588999999999999999999999  9999998876551   


Q ss_pred             ----c-cccCcceecCCCCC
Q 013850          420 ----C-EHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ----~-~~~~~~~~tgD~~~  434 (435)
                          + ...++||+|||+++
T Consensus       384 ~~~~~~~~~~~~~~TGD~~~  403 (515)
T TIGR03098       384 PRPGELHLPELAVWSGDTVR  403 (515)
T ss_pred             CccccccccccceeccceEE
Confidence                1 11235899999763

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9e-52  Score=375.47  Aligned_cols=418  Identities=22%  Similarity=0.303  Sum_probs=334.6

Q ss_pred             CccceeecCC---CCCCCCCCCCCchHHHHHhhcccCCCceeeeecC----------CC-----------cceeHHHHHH
Q 013850            7 GRDGIYRSLR---PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDAD----------SD-----------ESLSFSQFKS   62 (435)
Q Consensus         7 ~~~~~~~~~~---~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~   62 (435)
                      .+...+|+-.   +-...|.+.-.|+.+++.+.++++.++.++-..+          +|           .++||.|+.+
T Consensus        18 ~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~   97 (678)
T KOG1180|consen   18 HETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYE   97 (678)
T ss_pred             CCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHH
Confidence            3444455432   3344455555999999999999999999983211          11           6889999999


Q ss_pred             HHHHHHHHHHhCCCCCCCE-EEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850           63 IVIKVSHSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus        63 ~~~~la~~L~~~g~~~gd~-V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      ++..+|+.|.+.|++++++ |+|+++.+.+|+.+++||++.+..+|.+-..+..+.+.+-|.+++++.+||+.+..+.+.
T Consensus        98 ~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~  177 (678)
T KOG1180|consen   98 RVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLK  177 (678)
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHH
Confidence            9999999999999997776 999999999999999999999999999999999999999999999999999999988776


Q ss_pred             hcC-----CCcEEeccCCccc----ccc-cccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCcccee
Q 013850          142 DLN-----LPAVLLGSKDKVS----SSG-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI  211 (435)
Q Consensus       142 ~~~-----~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  211 (435)
                      ...     .+.++.....+..    +.. .......+.+|+++++.+.... .++....|+|+|+|+|||||||.||||+
T Consensus       178 ~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVm  256 (678)
T KOG1180|consen  178 APLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVM  256 (678)
T ss_pred             HHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence            553     3445544421111    111 1234567899999998887533 4555568999999999999999999999


Q ss_pred             eccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCC--------HHHHHHHHHhcC
Q 013850          212 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD--------IEMALRAIEKYR  283 (435)
Q Consensus       212 ~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~--------~~~~~~~l~~~~  283 (435)
                      ++|+|+++.+........ .-...|+++.++|+.|++.+. .-+.+++.|+.+-..+...        ....--.+...|
T Consensus       257 l~H~NiVA~~~G~~~~v~-~lg~~D~yi~yLPLAHIlEl~-aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lk  334 (678)
T KOG1180|consen  257 LTHSNIVAGVTGVGENVP-ELGPKDRYIAYLPLAHILELT-AELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELK  334 (678)
T ss_pred             EecccHHhhhhhhcccCc-ccCCCceEEEechHHHHHHHH-HHHHHHhhCCEeecCCcceecccchhhccCCcCcccccc
Confidence            999999999877665553 223339999999999999995 7788999999998775421        122233566789


Q ss_pred             ceEEEecHHHHHHHHhcccc------------------------c--C----------------CCCcceeEEEecCCCC
Q 013850          284 VTVWWVVPPIILALAKNSLV------------------------R--K----------------FDISSLKLVGSGAAPL  321 (435)
Q Consensus       284 ~t~~~~~P~~~~~l~~~~~~------------------------~--~----------------~~l~~lr~i~~gG~~l  321 (435)
                      ||+|.++|.+|.++.+....                        +  .                ..-..||.+++||+|+
T Consensus       335 PTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapL  414 (678)
T KOG1180|consen  335 PTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPL  414 (678)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCC
Confidence            99999999998877553000                        0  0                0014899999999999


Q ss_pred             cHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCC--ceeEEEeCC
Q 013850          322 GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEIWVRGP  399 (435)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gei~v~g~  399 (435)
                      +++..+.+...+. +++.++||.||+++..+...+.  +...+.+|.|++.++++++|.+++--...+.  .|||+++|+
T Consensus       415 S~dtQrF~nic~C-~Pv~qGYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~  491 (678)
T KOG1180|consen  415 SPDTQRFMNICFC-CPVLQGYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGP  491 (678)
T ss_pred             CHHHHHHHHHhcc-ccccccccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCC
Confidence            9999999999987 8999999999999999988887  6778899999999999999976665544444  899999999


Q ss_pred             CccccccccCCcccccccccccccCc--ceecCCCCC
Q 013850          400 NVTPGIVYINFFVFTLFLWGCEHTDS--FIRGKDQQT  434 (435)
Q Consensus       400 ~~~~g~~y~~~~~~~~~~~~~~~~~~--~~~tgD~~~  434 (435)
                      ++..|  ||++++.|++.|..  .+|  ||+|||+++
T Consensus       492 ~vt~g--Y~kn~ekT~e~ft~--~~G~~WF~TGDIGe  524 (678)
T KOG1180|consen  492 NVTMG--YYKNEEKTKEDFTV--EDGQRWFRTGDIGE  524 (678)
T ss_pred             ccChh--hhCChhhhhhhcee--cCCcEEEeccccce
Confidence            99999  99999999999954  355  999999985

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-50  Score=402.56  Aligned_cols=417  Identities=23%  Similarity=0.320  Sum_probs=322.4

Q ss_pred             CccceeecCCCCC-CCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 013850            7 GRDGIYRSLRPPL-VLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF   85 (435)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~   85 (435)
                      ..+++|-+..++. .+|.. ..++.+.|.++++.+|+++|+.+.  ++.+||.||.+++.++|+.|.+.|+++||+|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~a~~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~   89 (567)
T PRK06178         13 LQQAAWPAGIPREPEYPHG-ERPLTEYLRAWARERPQRPAIIFY--GHVITYAELDELSDRFAALLRQRGVGAGDRVAVF   89 (567)
T ss_pred             hHHhhCCcCCCCCCCCCcC-cccHHHHHHHHHHHCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4556666555554 33333 368999999999999999999886  4899999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEecc-CCcccccc
Q 013850           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGS-KDKVSSSG  160 (435)
Q Consensus        86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~  160 (435)
                      ++|+++++++++||+++|++++|++|..+.+++.++++.++++++++++...+.+....    ...+++.. .+......
T Consensus        90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~  169 (567)
T PRK06178         90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEP  169 (567)
T ss_pred             CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccc
Confidence            99999999999999999999999999999999999999999999999988777665432    11222111 10000000


Q ss_pred             ccccc-------ccccchhhhhhhcCC-CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc
Q 013850          161 LISRS-------SKIVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG  232 (435)
Q Consensus       161 ~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~  232 (435)
                      .....       .....+.++.+.... ..........++++++|+|||||||.||+|.+||.++........... ...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~  248 (567)
T PRK06178        170 TLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA-VVG  248 (567)
T ss_pred             ccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh-ccC
Confidence            00000       000111122221110 011123345689999999999999999999999999887654433221 222


Q ss_pred             CCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCccee
Q 013850          233 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK  312 (435)
Q Consensus       233 ~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr  312 (435)
                      ..++++++.+|++|++|+...++.++..|+++++.+.+++..+++.++++++|.+.++|..+..|.+.......+++++|
T Consensus       249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~  328 (567)
T PRK06178        249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLR  328 (567)
T ss_pred             CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchhe
Confidence            33499999999999999876788899999999999999999999999999999999999999999887655566778888


Q ss_pred             EEEe--cCCCCcHHHHHHHHhhCCCCeee-cCcCcccccccccccCCCC-----CCcCCCCcccccCCcEEEEEeCCCCc
Q 013850          313 LVGS--GAAPLGKELMEDCQKNIPGATIF-QGYGMTETCAPISLENPLV-----GVRRSGSAGTLVAGVEAQIVSVDTLK  384 (435)
Q Consensus       313 ~i~~--gG~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~  384 (435)
                      .+..  .++++++++.+.|++.++ ..++ +.||+||++..........     ...+++++|+|++|++++|+|+++++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~  407 (567)
T PRK06178        329 QVRVVSFVKKLNPDYRQRWRALTG-SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGE  407 (567)
T ss_pred             eeeeccccccCCHHHHHHHHHHhC-CcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCC
Confidence            8644  458999999999999997 5555 5799999886654432111     12345789999999999999988899


Q ss_pred             cCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          385 PLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       385 ~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++.|++|||+++|++++.|  ||++++.+.+.+    .+|||+|||++.
T Consensus       408 ~~~~g~~Gel~v~g~~v~~g--Y~~~~~~~~~~~----~dg~~~TGDl~~  451 (567)
T PRK06178        408 LLPLGAEGEIVVRTPSLLKG--YWNKPEATAEAL----RDGWLHTGDIGK  451 (567)
T ss_pred             cCCCCCceEEEEECCccccc--ccCChhhhhhcc----cCCceeecceEE
Confidence            99999999999999999999  999999988876    356888888753

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=6.1e-51  Score=443.95  Aligned_cols=376  Identities=20%  Similarity=0.285  Sum_probs=313.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++.+|+++|+++.  +..+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~  535 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALADA--RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW  535 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|++|.++.+++..+++.+++++++++......+..... ..+.                   .+.......   ...+.
T Consensus       536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~-------------------~~~~~~~~~---~~~~~  592 (1296)
T PRK10252        536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPD-LTSL-------------------CYNAPLAPQ---GAAPL  592 (1296)
T ss_pred             EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCC-ceee-------------------ecccccccc---cCCCC
Confidence            999999999999999999999999999876655433210 0000                   011111000   11112


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||||.++|+++.+.+.+......+...  |++++..|++|..+++ .++.+|..|+++++
T Consensus       593 ~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~--d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~  669 (1296)
T PRK10252        593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTAD--DVVLQKTPCSFDVSVW-EFFWPFIAGAKLVM  669 (1296)
T ss_pred             CCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCC--CEEEEeCCcchhhhHH-HHHHHHhCCCEEEE
Confidence            23367899999999999999999999999999887776655555433  9999999999999885 88999999999999


Q ss_pred             cC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       267 ~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      .+   ..++..+++.++++++|++.++|+++..+++......  ..++++|.+++||+++++++.+.|.+.++ ++++|.
T Consensus       670 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n~  748 (1296)
T PRK10252        670 AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHNL  748 (1296)
T ss_pred             CChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEeC
Confidence            85   3589999999999999999999999999987643322  34689999999999999999999999885 999999


Q ss_pred             cCcccccccccccCCCCC-----CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccc
Q 013850          342 YGMTETCAPISLENPLVG-----VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF  416 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~-----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~  416 (435)
                      ||+||++..++.......     .....++|+|+++++++|+| +++++++.|+.|||+++|++++.|  |+++++.|.+
T Consensus       749 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~G--Y~~~~~~t~~  825 (1296)
T PRK10252        749 YGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQG--YLGRPDLTAS  825 (1296)
T ss_pred             CCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchh--hCCCcccchh
Confidence            999998876554322211     22346799999999999999 699999999999999999999999  9999999999


Q ss_pred             cc---cccccCcceecCCCCC
Q 013850          417 LW---GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       417 ~~---~~~~~~~~~~tgD~~~  434 (435)
                      .|   .+...++||+|||+++
T Consensus       826 ~f~~~~~~~~~~~y~TGDl~~  846 (1296)
T PRK10252        826 RFIADPFAPGERMYRTGDVAR  846 (1296)
T ss_pred             hcccCCCCCCCEEEecCceEE
Confidence            88   2223456999999874

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-50  Score=409.84  Aligned_cols=394  Identities=20%  Similarity=0.231  Sum_probs=300.3

Q ss_pred             CchHHHHHhhcccCCCceeeeecCC---CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .|+.+.+.++  .+|+++|++..+.   .+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus        86 ~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~G  163 (655)
T PRK03584         86 LNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLG  163 (655)
T ss_pred             eeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            6888877764  6899999986532   2689999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH---------HHHhhc----C-CCcEEeccCCccccccccccccccc
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIV  169 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~  169 (435)
                      ++++|+++.++.+++..+++.++++++|+++...         +.+...    . .+.+++........  .........
T Consensus       164 av~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~  241 (655)
T PRK03584        164 AIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAA--AAAALPGAL  241 (655)
T ss_pred             cEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcc--cccccCCcc
Confidence            9999999999999999999999999999987532         111111    1 11222211100000  001112234


Q ss_pred             chhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHH-HHHHHhhhhhccCCCcEEEecchHHHHH
Q 013850          170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVLCVLPMFHVF  248 (435)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~d~~l~~~~l~~~~  248 (435)
                      .|++++..... .........++++++|+|||||||.||||+++|++++.. .........+  ..+|++++..++.|+.
T Consensus       242 ~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~  318 (655)
T PRK03584        242 LWEDFLAPAEA-AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDL--GPGDRFFWYTTCGWMM  318 (655)
T ss_pred             cHHHHhhcccc-CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCC--CCCCEEEEcCCchHHh
Confidence            55555542211 222334567799999999999999999999999987644 2222222333  3349999999999876


Q ss_pred             HHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCc
Q 013850          249 GLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       249 g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~  322 (435)
                      ..  .++.+|..|+++++.+.    +++..+++.++++++|++.++|+++..|.+...  ....++++||.+++||++++
T Consensus       319 ~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~  396 (655)
T PRK03584        319 WN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLP  396 (655)
T ss_pred             HH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCC
Confidence            53  46789999999998752    479999999999999999999999999987532  23457899999999999999


Q ss_pred             HHHHHHHHhhCC-CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC--
Q 013850          323 KELMEDCQKNIP-GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--  399 (435)
Q Consensus       323 ~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~--  399 (435)
                      +++.+++.+.++ +..+++.||+||+++......+.. ..+.+++|.|.+|++++|+| ++|+++ .|+.|||+++||  
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p  473 (655)
T PRK03584        397 PEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLL-PVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFP  473 (655)
T ss_pred             HHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCC-CcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCC
Confidence            999999999984 589999999999865443332221 34568899999999999999 578888 899999999996  


Q ss_pred             CccccccccCCcccccccccccc-cCcceecCCCCC
Q 013850          400 NVTPGIVYINFFVFTLFLWGCEH-TDSFIRGKDQQT  434 (435)
Q Consensus       400 ~~~~g~~y~~~~~~~~~~~~~~~-~~~~~~tgD~~~  434 (435)
                      +++.|  ||++++.++....++. .+|||+|||+++
T Consensus       474 ~~~~g--y~~~~~~~~~~~~~~~~~~g~~~TGDl~~  507 (655)
T PRK03584        474 SMPLG--FWNDPDGSRYRDAYFDTFPGVWRHGDWIE  507 (655)
T ss_pred             CCcce--eeCCCccchHHHhhhccCCCEeecCCeEE
Confidence            79999  9999986542222332 256888999874

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.6e-50  Score=401.42  Aligned_cols=400  Identities=26%  Similarity=0.387  Sum_probs=316.3

Q ss_pred             CCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        24 ~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .+..++.+.|.++++++|+++|+++.  +..+||.||.+.++++|+.|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G   97 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICM--GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAG   97 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            33468999999999999999999986  4899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCccccc-c--------------cccc
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSS-G--------------LISR  164 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~--------------~~~~  164 (435)
                      ++++|++|.++.+++.++++.++++++++++...+.+....    .+.+++......... .              ....
T Consensus        98 ~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (557)
T PRK07059         98 YVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWS  177 (557)
T ss_pred             eEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccC
Confidence            99999999999999999999999999999887655443321    122222111000000 0              0000


Q ss_pred             cccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh--c-c--CCCcEEE
Q 013850          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--V-G--ELDHVVL  239 (435)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~-~--~~~d~~l  239 (435)
                      ......+++.+..... .........++++++|+|||||||.||+|.++|.++...+.........  . .  .....++
T Consensus       178 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (557)
T PRK07059        178 LPGHVRFNDALAEGAR-QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFV  256 (557)
T ss_pred             CCCcccHHHHhhccCC-CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEE
Confidence            1122334444433221 2223445678999999999999999999999999998764432221111  1 1  1125788


Q ss_pred             ecchHHHHHHHHHHHHhhhhcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecC
Q 013850          240 CVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA  318 (435)
Q Consensus       240 ~~~~l~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG  318 (435)
                      +.+|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|.++..|.+.......+++++|.++.||
T Consensus       257 ~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg  336 (557)
T PRK07059        257 CALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGG  336 (557)
T ss_pred             EeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEecc
Confidence            89999999988667778888888877664 45889999999999999999999999999988766667788999999999


Q ss_pred             CCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC
Q 013850          319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG  398 (435)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g  398 (435)
                      +++++.+.++|.+.++ +++++.||+||++.++...... ....+.++|.|+++++++|+| +++++++.|+.|||+++|
T Consensus       337 ~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g  413 (557)
T PRK07059        337 MAVQRPVAERWLEMTG-CPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRG  413 (557)
T ss_pred             ccCCHHHHHHHHHHhC-CCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeC
Confidence            9999999999999886 9999999999998776554322 233467899999999999999 688999999999999999


Q ss_pred             CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 ~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.++.|  ||++++.+.+.+   ..+|||+|||++.
T Consensus       414 ~~~~~g--Y~~~~~~~~~~~---~~~g~~~TGDl~~  444 (557)
T PRK07059        414 PQVMAG--YWNRPDETAKVM---TADGFFRTGDVGV  444 (557)
T ss_pred             Cccchh--hhcCHHHHhhhc---ccCCceecCcEEE
Confidence            999999  999999988765   3568999999753

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=3.7e-50  Score=398.12  Aligned_cols=388  Identities=24%  Similarity=0.295  Sum_probs=313.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCC---CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .|+.++|.+.++++|+++|++..+.   .+.+||.||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|
T Consensus         7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G   86 (517)
T PRK08008          7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG   86 (517)
T ss_pred             ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            6899999999999999999987542   2689999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC------CCcEEeccCCcccccccccccccccchhhhhhh
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL  177 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (435)
                      ++++|+++..+.+++..+++.++++.++++++..+.+.+..      .+.+++.....       .......++++....
T Consensus        87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  159 (517)
T PRK08008         87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVAL-------PADDGVSSFTQLKAQ  159 (517)
T ss_pred             eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCC-------cccccccCHHHHhcc
Confidence            99999999999999999999999999999988776655432      12222221110       111223344444332


Q ss_pred             cCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhh
Q 013850          178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ  257 (435)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~  257 (435)
                      ... .........++++++|+|||||||.||+|.++|.++...........  ....++++++.+|++|..+....++.+
T Consensus       160 ~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~  236 (517)
T PRK08008        160 QPA-TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC--ALRDDDVYLTVMPAFHIDCQCTAAMAA  236 (517)
T ss_pred             CCc-cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc--CCCCCCeEEEecCcHHHHHHHHHHHHH
Confidence            221 11122345678999999999999999999999999976532221111  123349999999999998887788999


Q ss_pred             hhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCe
Q 013850          258 LQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (435)
Q Consensus       258 l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  337 (435)
                      +..|+++++.+.+++..+++.++++++|++.++|.+++.+...........+++|.+..++ ++++++...|.+.++ ++
T Consensus       237 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~  314 (517)
T PRK08008        237 FSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERFG-VR  314 (517)
T ss_pred             HhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHhC-Ce
Confidence            9999999999999999999999999999999999999999876554444556788877754 788999999999886 99


Q ss_pred             eecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC---CCccccccccCCcccc
Q 013850          338 IFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG---PNVTPGIVYINFFVFT  414 (435)
Q Consensus       338 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g---~~~~~g~~y~~~~~~~  414 (435)
                      +++.||+||+++.+....... .....++|.|+++++++|+| +++++++.|+.|||+++|   ++++.|  ||++++.+
T Consensus       315 ~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~g--y~~~~~~~  390 (517)
T PRK08008        315 LLTSYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKE--YYLDPKAT  390 (517)
T ss_pred             EEeeccccccccccccCCccc-cccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhh--HhCChHHH
Confidence            999999999986555443332 44567899999999999999 689999999999999998   589999  99999999


Q ss_pred             cccccccccCcceecCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~  433 (435)
                      .+.+   ..++|++|||++
T Consensus       391 ~~~~---~~~g~~~TGDl~  406 (517)
T PRK08008        391 AKVL---EADGWLHTGDTG  406 (517)
T ss_pred             hhcc---cCCCCeeccceE
Confidence            8866   357799999975

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-50  Score=408.05  Aligned_cols=397  Identities=19%  Similarity=0.213  Sum_probs=298.9

Q ss_pred             CchHHHHHh-hcccCCCceeeeecCCC------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFLFR-NSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l~~-~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      .|+.+...+ ++.++|+++|++..+.+      +.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||
T Consensus       174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~  253 (728)
T PLN03052        174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI  253 (728)
T ss_pred             eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            677775544 44678999999876432      47999999999999999999999999999999999999999999999


Q ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhhcC-CCcEEeccCCccccccccccccccc
Q 013850          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDLN-LPAVLLGSKDKVSSSGLISRSSKIV  169 (435)
Q Consensus       100 ~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  169 (435)
                      +++|++++|++|.++.+++..++++++++++|+++....         .+.... ...+++.........   .......
T Consensus       254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~---~~~~~~~  330 (728)
T PLN03052        254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRV---KLREGDM  330 (728)
T ss_pred             HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCcccc---ccccCCc
Confidence            999999999999999999999999999999999875431         111111 122222211100000   0011234


Q ss_pred             chhhhhhhcCC---CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHH
Q 013850          170 SFHDLIELSGS---VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       170 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~  246 (435)
                      .|++++.....   .....+....++++++|+|||||||.||||+++|.+++...........+  ..+|++++..+++|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l--~~~d~~~~~~~l~w  408 (728)
T PLN03052        331 SWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDI--RKGDIVCWPTNLGW  408 (728)
T ss_pred             cHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCC--CCCcEEEECCCcHH
Confidence            56665543211   01122223456899999999999999999999999887665444333333  33499999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHH
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~  325 (435)
                      +++.+ .++.+|..|+++++.++ +++..+++.++++++|++.++|+++..|.+.......++++||.++++|++++++.
T Consensus       409 ~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~  487 (728)
T PLN03052        409 MMGPW-LVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDD  487 (728)
T ss_pred             HhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHH
Confidence            99984 78899999999999864 45678999999999999999999999998876556678999999999999999999


Q ss_pred             HHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCC--ceeEEEeCCC--c
Q 013850          326 MEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEIWVRGPN--V  401 (435)
Q Consensus       326 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gei~v~g~~--~  401 (435)
                      ..++.+.++..++++.||.||+++.+....+.. ....+++|.|.+|++++|+| ++|++++.|+  +|||+++++.  .
T Consensus       488 ~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~  565 (728)
T PLN03052        488 YLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQ-PQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGA  565 (728)
T ss_pred             HHHHHHhcCCCCeEeeccChhhCcccccCCCCC-CCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCC
Confidence            988888776568999999999886544333221 34568899999999999999 6899999885  6999998653  3


Q ss_pred             cccccccCCcccccccc-cc--cccCcceecCCCCC
Q 013850          402 TPGIVYINFFVFTLFLW-GC--EHTDSFIRGKDQQT  434 (435)
Q Consensus       402 ~~g~~y~~~~~~~~~~~-~~--~~~~~~~~tgD~~~  434 (435)
                      ..+  |+++.. +...| ++  +....|++|||+++
T Consensus       566 ~~~--~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~  598 (728)
T PLN03052        566 SST--LLNADH-YKVYFKGMPVFNGKILRRHGDIFE  598 (728)
T ss_pred             Ccc--ccCchh-hhhhhhcCCCCCCCEEEecCceEE
Confidence            346  776532 22222 00  01223889999864

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-50  Score=400.89  Aligned_cols=384  Identities=24%  Similarity=0.342  Sum_probs=310.1

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +|+.++|.+.++++|+++|+++.  +..+||.||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   84 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVW   84 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEEC--CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEE
Confidence            78999999999999999999986  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|+++..+.+++..+++.++++.++++++..+.+....     ...++....           ......++++...... 
T Consensus        85 v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-  152 (528)
T PRK07470         85 VPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGG-----------ARAGLDYEALVARHLG-  152 (528)
T ss_pred             EecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCC-----------CcccccHHHHHhcCCC-
Confidence            99999999999999999999999999987655443321     111111111           0012344444432211 


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .........++++++|+|||||||.||+|.++|+++...+..............|+++..+|++|.+++. .++ .+..|
T Consensus       153 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g  230 (528)
T PRK07470        153 ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QVARG  230 (528)
T ss_pred             CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HHhcC
Confidence            1122344577899999999999999999999999987654432222211112338999999999999985 444 45667


Q ss_pred             cEEEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          262 NCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       262 ~~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      ++.++.+  .+++..+++.++++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++ .+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~  309 (528)
T PRK07470        231 AATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLG-KVLV  309 (528)
T ss_pred             ceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhC-cHHH
Confidence            6666553  578999999999999999999999999999887666678899999999999999999999999997 8999


Q ss_pred             cCcCcccccccccccCCCC------CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccc
Q 013850          340 QGYGMTETCAPISLENPLV------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  413 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~  413 (435)
                      +.||+||+++.+.......      .....+++|.|+++++++|+| +++++++.|+.|||+++|+.++.|  ||++++.
T Consensus       310 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~g--y~~~~~~  386 (528)
T PRK07470        310 QYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAG--YYNNPEA  386 (528)
T ss_pred             HhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchh--hcCCHHH
Confidence            9999999887665432210      123457899999999999999 588999999999999999999999  9999999


Q ss_pred             ccccccccccCcceecCCCCC
Q 013850          414 TLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       414 ~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +...|    .++||+|||+++
T Consensus       387 ~~~~~----~~~~~~TGDl~~  403 (528)
T PRK07470        387 NAKAF----RDGWFRTGDLGH  403 (528)
T ss_pred             HHhhh----cCCcEecceeEE
Confidence            88876    377999999763

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.3e-50  Score=414.36  Aligned_cols=383  Identities=22%  Similarity=0.302  Sum_probs=295.5

Q ss_pred             CCchHHHHHhhcccCCC-ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           26 SFSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      ..|+.+.|.++++++|+ ++|+.+. ..+.+||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|+
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~  280 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR  280 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence            37899999999999998 5787653 237899999999999999999886 59999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh--cC---CCcEEeccCCcccccccccccccccchhhh--hhh
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD--LN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDL--IEL  177 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  177 (435)
                      +++|+++.++.+++.++++.++++++|++++..+....  ..   .....+..+...          ....+...  ...
T Consensus       281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~  350 (718)
T PRK08043        281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLK----------DDVTTADKLWIFA  350 (718)
T ss_pred             cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhh----------hhcchhHHHHHHH
Confidence            99999999999999999999999999998776543211  10   000111111000          00011100  000


Q ss_pred             cCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhh
Q 013850          178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ  257 (435)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~  257 (435)
                      .............++++++|+|||||||.||+|.++|+++.+.+........+.  .+|++++.+|++|.+++...++.+
T Consensus       351 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~Pl~h~~g~~~~~~~~  428 (718)
T PRK08043        351 HLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFT--PNDRFMSALPLFHSFGLTVGLFTP  428 (718)
T ss_pred             HHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCC--ccCeEEEcCcchhhhhhHHHHHHH
Confidence            000011112234678999999999999999999999999988876655444333  349999999999999987778899


Q ss_pred             hhcCcEEEecCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCC
Q 013850          258 LQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (435)
Q Consensus       258 l~~G~~i~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~  336 (435)
                      +..|+++++.+. +++..+++.+.++++|++.++|+++..+.+..  ...++++||.+++||+++++++.+.|++.++ +
T Consensus       429 l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g-~  505 (718)
T PRK08043        429 LLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFG-L  505 (718)
T ss_pred             HHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcC-C
Confidence            999999998864 57788899999999999999999998887642  3456789999999999999999999999996 9


Q ss_pred             eeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccC--Ccccc
Q 013850          337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN--FFVFT  414 (435)
Q Consensus       337 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~--~~~~~  414 (435)
                      ++++.||+||+++......+.  ..+.+++|+|+||++++|+|. ++.    ++.|||+++|++++.|  ||+  +++.+
T Consensus       506 ~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~-~~~----~~~Gel~v~g~~v~~G--Y~~~e~~~~~  576 (718)
T PRK08043        506 RILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSV-PGI----EQGGRLQLKGPNIMNG--YLRVEKPGVL  576 (718)
T ss_pred             CeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecC-CCC----CCceEEEEecCCcccc--ccCCCCcccc
Confidence            999999999998776654333  346789999999999999984 432    5669999999999999  998  44432


Q ss_pred             cccc----cccccCcceecCCCCC
Q 013850          415 LFLW----GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~----~~~~~~~~~~tgD~~~  434 (435)
                      ...+    ..+..+|||+|||+++
T Consensus       577 ~~~~~~~~~~~~~~gw~~TGDlg~  600 (718)
T PRK08043        577 EVPTAENARGEMERGWYDTGDIVR  600 (718)
T ss_pred             cccccccccccccCCeEecCCEEE
Confidence            1111    0112367999999864

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-50  Score=398.37  Aligned_cols=381  Identities=25%  Similarity=0.316  Sum_probs=312.1

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++++|+++|+++.  ++.+||.||.+.++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         12 ATYGHLLVSALKRYPDRPALVLG--DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccc-cHHHHhhcCCC----cEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPE-LWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|++|..+.+++..+++.++++.+++++. ....+......    ..++....         ... ...+.+......  
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~--  157 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGP---------VPD-GVDLLAAAAKFG--  157 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCC---------ccc-hhhHHHhhhccC--
Confidence            99999999999999999999999999876 33332221110    11111110         000 000111111001  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .........++++++|+|||||||.||+|.++|.++...+........+.  .++++++..|++|..++.  ++.++..|
T Consensus       158 ~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~g~~--~~~~l~~G  233 (524)
T PRK06188        158 PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWP--ADPRFLMCTPLSHAGGAF--FLPTLLRG  233 (524)
T ss_pred             cccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCC--cCcEEEEecCchhhhhHH--HHHHHHcC
Confidence            11111223456799999999999999999999999998877655554443  349999999999998874  57889999


Q ss_pred             cEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       262 ~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      +++++.+.+++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+.+.+.++ ..+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~  312 (524)
T PRK06188        234 GTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQY  312 (524)
T ss_pred             CEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhhe
Confidence            9999999999999999999999999999999999999987766778899999999999999999999999987 889999


Q ss_pred             cCcccccccccccCCCC----CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccc
Q 013850          342 YGMTETCAPISLENPLV----GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFL  417 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~  417 (435)
                      ||+||++..+.......    ......++|+|+++++++|+|+ ++++++.|+.|||+++|+.++.|  |+++++.+...
T Consensus       313 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~  389 (524)
T PRK06188        313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDE-DGREVAQGEVGEICVRGPLVMDG--YWNRPEETAEA  389 (524)
T ss_pred             eCccccCCceeecCchhccccccccCCccccccCCcEEEEEcC-CCCCCCCCCeeEEEEECcchhhh--hcCChHHhhhh
Confidence            99999976665443321    1345678999999999999994 69999999999999999999999  99999998887


Q ss_pred             ccccccCcceecCCCC
Q 013850          418 WGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       418 ~~~~~~~~~~~tgD~~  433 (435)
                      +    .+|||+|||++
T Consensus       390 ~----~~g~~~TGDl~  401 (524)
T PRK06188        390 F----RDGWLHTGDVA  401 (524)
T ss_pred             h----cCCceeecceE
Confidence            7    46799999975

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.8e-50  Score=398.98  Aligned_cols=377  Identities=20%  Similarity=0.269  Sum_probs=309.5

Q ss_pred             chHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEE
Q 013850           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v  107 (435)
                      ++.+.|.+.++.+|+++|+.+.  +..+||+||.+++.++|+.|++.|+++||+|+++++|+.++++++|||+++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v   78 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYI   78 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            4788999999999999999876  48999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCC
Q 013850          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (435)
Q Consensus       108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (435)
                      |+++.++.+++..+++..+++.++++.+.........    .+...                ..........  ......
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~----~~~~~----------------~~~~~~~~~~--~~~~~~  136 (502)
T TIGR01734        79 PVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQ----IITLS----------------ALEQAETSGG--PVSFDH  136 (502)
T ss_pred             CCCCcChHHHHHHHHHhcCCCEEEecccccccccCCc----eEEch----------------HhhhhhhhcC--Cccccc
Confidence            9999999999999999999999999876543322111    11000                0111111111  111123


Q ss_pred             CCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEec
Q 013850          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  267 (435)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~  267 (435)
                      ...+++.++|+|||||||.||+|.++|+++.....+.......  ..++++++..|++|..++. .++.++..|+++++.
T Consensus       137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~  213 (502)
T TIGR01734       137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPL--SEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCL  213 (502)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCC--CCCceEEeecCceechhHH-HHHHHHHCCCEEEEc
Confidence            3467899999999999999999999999999887765554433  3338999999999999884 788999999999988


Q ss_pred             CC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850          268 GK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  344 (435)
Q Consensus       268 ~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~  344 (435)
                      +.   .++..+++.+.+++++.+.++|+++..++.........++++|.++++|+++++++.+++.+.++++++++.||+
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~  293 (502)
T TIGR01734       214 DKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGP  293 (502)
T ss_pred             CHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccC
Confidence            64   478999999999999999999999988877655556678899999999999999999999999988999999999


Q ss_pred             ccccccccccCCCC---CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          345 TETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       345 tE~~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      ||+++.+.......   ......++|.+.++++++|+| +++.++++|+.|||+++|+.++.|  |+++++.+.+.|-..
T Consensus       294 tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~~~~~~  370 (502)
T TIGR01734       294 TEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKG--YLNNPEKTAEAFFSH  370 (502)
T ss_pred             CcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEcccccccc--ccCCcccchHhheeC
Confidence            99876544322111   133446799999999999999 578999999999999999999999  999999988866222


Q ss_pred             ccCcceecCCCCC
Q 013850          422 HTDSFIRGKDQQT  434 (435)
Q Consensus       422 ~~~~~~~tgD~~~  434 (435)
                      ...+||+|||+++
T Consensus       371 ~~~~~~~TGDlg~  383 (502)
T TIGR01734       371 EGQPAYRTGDAGT  383 (502)
T ss_pred             CCcEEEECCCEEE
Confidence            3346999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.8e-50  Score=401.78  Aligned_cols=390  Identities=22%  Similarity=0.324  Sum_probs=297.3

Q ss_pred             CCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        25 ~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      ++.|+.++|.+.++.+|+++|++..  +..+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+
T Consensus        12 ~~~~~~~~l~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~   89 (579)
T PLN03102         12 VPLTPITFLKRASECYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGA   89 (579)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            3468999999999999999999986  47999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----------CCcEEeccCCcccccccccccccccchhh
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----------LPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (435)
                      +++|+++.++.+++.++++.++++++|++++..+.+....           .+.+.+.....  ..   .......++.+
T Consensus        90 ~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~  164 (579)
T PLN03102         90 VLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDF--PK---RPSSEELDYEC  164 (579)
T ss_pred             EEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccc--cc---CCcccccCHHH
Confidence            9999999999999999999999999999987766554321           11222211100  00   00111223444


Q ss_pred             hhhhcCCCCCC---CCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHH
Q 013850          174 LIELSGSVTDI---PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL  250 (435)
Q Consensus       174 ~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~  250 (435)
                      +..........   ......++++++|+|||||||.||+|.++|+++............+  ...+++++.+|++|..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~g~  242 (579)
T PLN03102        165 LIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM--GTCPVYLWTLPMFHCNGW  242 (579)
T ss_pred             HHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCC--CCCCeEEecCChhhhcch
Confidence            43322210100   0123457899999999999999999999999975543332222222  223789999999999998


Q ss_pred             HHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHH
Q 013850          251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ  330 (435)
Q Consensus       251 ~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~  330 (435)
                      . ..+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.++++
T Consensus       243 ~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~  321 (579)
T PLN03102        243 T-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQ  321 (579)
T ss_pred             h-HHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHH
Confidence            5 667788889999888888999999999999999999999999999987544444556788899999999999999986


Q ss_pred             hhCCCCeeecCcCcccccccccccCCCC------C------CcCCCCcccccCCcEEEEEeCCCCccCCC--CCceeEEE
Q 013850          331 KNIPGATIFQGYGMTETCAPISLENPLV------G------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWV  396 (435)
Q Consensus       331 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~------~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gei~v  396 (435)
                      + ++ .++++.||+||+++.+.......      .      ....+..+.+++  .++++|++.+++++.  ++.|||++
T Consensus       322 ~-~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v  397 (579)
T PLN03102        322 R-LG-FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVI  397 (579)
T ss_pred             H-cC-CeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEE
Confidence            5 54 99999999999886543321110      0      011223333333  456667667777764  36899999


Q ss_pred             eCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          397 RGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       397 ~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|++++.|  ||++++.+.+.|    .+|||+|||+++
T Consensus       398 ~g~~~~~G--Y~~~~~~t~~~f----~~gw~~TGDlg~  429 (579)
T PLN03102        398 KGSSIMKG--YLKNPKATSEAF----KHGWLNTGDVGV  429 (579)
T ss_pred             ECcchhhh--hcCChhhhHhhh----ccCceecCceEE
Confidence            99999999  999999999877    467999999864

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-50  Score=398.63  Aligned_cols=391  Identities=21%  Similarity=0.279  Sum_probs=307.4

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      ..++.++|.+.++.+|+++|+++.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus         9 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~   86 (540)
T PRK06164          9 ADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGAT   86 (540)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcE
Confidence            379999999999999999999965  589999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccH-----HHHhhcC------CCcEEeccCCcccccccccccccccchhhh
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDL  174 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (435)
                      ++|+++..+.+++.++++.++++++|+++++.     +.+....      .+.+++...... ..    .......+.+.
T Consensus        87 ~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~  161 (540)
T PRK06164         87 VIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAAD-AT----PAPAPGARVQL  161 (540)
T ss_pred             EEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcc-cC----CCCCccccccc
Confidence            99999999999999999999999999987642     2221111      111111110000 00    00000001111


Q ss_pred             hhhcCC--CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH
Q 013850          175 IELSGS--VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (435)
Q Consensus       175 ~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~  252 (435)
                      ......  ..........++++++++|||||||.||+|.++|+++...+......+.+.  .++++++.+|++|.+|+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g~~-  238 (540)
T PRK06164        162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYD--PGAVLLAALPFCGVFGFS-  238 (540)
T ss_pred             ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCC--CCCEEEEcCCchhHHHHH-
Confidence            111000  000011234568899999999999999999999999998877665555553  349999999999999995 


Q ss_pred             HHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecC-CCCcHHHHHHHHh
Q 013850          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA-APLGKELMEDCQK  331 (435)
Q Consensus       253 ~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG-~~l~~~~~~~~~~  331 (435)
                      .++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|.+.. .....++++|.+..+| .+...++.+++.+
T Consensus       239 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  317 (540)
T PRK06164        239 TLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARA  317 (540)
T ss_pred             HHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhh
Confidence            7899999999999999999999999999999999999999999998872 3455788999886665 5566677777766


Q ss_pred             hCCCCeeecCcCcccccccccccCCCCC-CcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccC
Q 013850          332 NIPGATIFQGYGMTETCAPISLENPLVG-VRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN  409 (435)
Q Consensus       332 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~  409 (435)
                      .  ++++++.||+||++........... ..+....|.++ ++++++|+|++++.+++.|+.|||+++|++++.|  ||+
T Consensus       318 ~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g--Y~~  393 (540)
T PRK06164        318 R--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRG--YLD  393 (540)
T ss_pred             c--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEeccccccc--ccC
Confidence            5  5999999999999876655433211 22344667776 8999999998899999999999999999999999  999


Q ss_pred             CcccccccccccccCcceecCCCCC
Q 013850          410 FFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++.|.+.|   ..++||+|||+++
T Consensus       394 ~~~~t~~~~---~~~~~~~TGDl~~  415 (540)
T PRK06164        394 NPDATARAL---TDDGYFRTGDLGY  415 (540)
T ss_pred             Cchhhhhcc---cCCCceecCCeEE
Confidence            999998876   3578999999864

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=8.4e-51  Score=444.41  Aligned_cols=392  Identities=19%  Similarity=0.212  Sum_probs=307.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecC-------CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      .++.++|.++++++|+++|+++..       .++.+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            579999999999999999998631       2478999999999999999999999999999999999999999999999


Q ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcccc---HHHHhhcC---------CCcEEeccCCccccccccccccc
Q 013850          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL---WDKVKDLN---------LPAVLLGSKDKVSSSGLISRSSK  167 (435)
Q Consensus       100 ~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  167 (435)
                      +++|++++|++|.++.+++..+++.+++++++++...   ...+....         ...+.+.....        ....
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  387 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS--------LVGG  387 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc--------cccc
Confidence            9999999999999999999999999999999987642   11111110         00011100000        0000


Q ss_pred             ccch--hhhhhhcCC-CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchH
Q 013850          168 IVSF--HDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM  244 (435)
Q Consensus       168 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l  244 (435)
                      ....  .+....... ..........++++++|+|||||||.||||+++|+++.+.+.+......+..  .|+++...++
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~~~~~~~  465 (1389)
T TIGR03443       388 SLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSE--NDKFTMLSGI  465 (1389)
T ss_pred             ccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCC--CCEEEEecCc
Confidence            0000  000000000 0111123356889999999999999999999999999988776655555433  3999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCC
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL  321 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l  321 (435)
                      +|..++. .++.+|..|+++++.+.   .++..+++.++++++|++.++|+++..|....   ...+++||.+++||+++
T Consensus       466 ~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l  541 (1389)
T TIGR03443       466 AHDPIQR-DMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDIL  541 (1389)
T ss_pred             eecchHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccC
Confidence            9998884 88999999999999864   36889999999999999999999999987543   24578999999999999


Q ss_pred             cHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCC---------CcCCCCcccccCCcEEEEEeCC-CCccCCCCCc
Q 013850          322 GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVD-TLKPLPPNQL  391 (435)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~g~~  391 (435)
                      ++.+.+++.+.+++++++|.||+||++..++.......         .....++|+|+++++++|+|++ .+++++.|++
T Consensus       542 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~  621 (1389)
T TIGR03443       542 TKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEV  621 (1389)
T ss_pred             CHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCc
Confidence            99999999998888999999999998876554321110         1134578999999999999953 3688999999


Q ss_pred             eeEEEeCCCccccccccCCcccccccc--ccc-----------------------ccCcceecCCCCC
Q 013850          392 GEIWVRGPNVTPGIVYINFFVFTLFLW--GCE-----------------------HTDSFIRGKDQQT  434 (435)
Q Consensus       392 Gei~v~g~~~~~g~~y~~~~~~~~~~~--~~~-----------------------~~~~~~~tgD~~~  434 (435)
                      |||+|+|++++.|  ||++|+.|.+.|  +||                       ..++||+|||+++
T Consensus       622 GEL~i~G~~v~~G--Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~  687 (1389)
T TIGR03443       622 GEIYVRAGGLAEG--YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGR  687 (1389)
T ss_pred             eEEEecccccchh--cCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCcee
Confidence            9999999999999  999999999988  443                       2368999999984

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=9.8e-51  Score=478.20  Aligned_cols=378  Identities=19%  Similarity=0.245  Sum_probs=318.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus       511 ~~~~~~~~~~a~~~p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~  588 (5163)
T PRK12316        511 RGVHRLFEEQVERTPEAPALAFG--EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY  588 (5163)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence            68999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-CCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      +|++|.++.+++.++++.++++++|++......+.... ...+.+...                  ........  ...+
T Consensus       589 vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~  648 (5163)
T PRK12316        589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRP------------------AAWLEGYS--EENP  648 (5163)
T ss_pred             eccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCc------------------chhhccCC--CCCC
Confidence            99999999999999999999999999987654433221 111111100                  00011111  2223


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||||+++|+++.+.+.+......+..  +++++..+|++|..+++ .++.+|..|++++
T Consensus       649 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~  725 (5163)
T PRK12316        649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGV--GDTVLQKTPFSFDVSVW-EFFWPLMSGARLV  725 (5163)
T ss_pred             CCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCC--CCEEEeeCCeehHHHHH-HHHHHHhCCCEEE
Confidence            34457899999999999999999999999999998877666555533  39999999999999985 8899999999999


Q ss_pred             ecC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          266 SMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       266 ~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +.+   .+++..+++.++++++|++.++|++++.|.+...  ...+++||.+++|||++++++.++|.+.+++++++|.|
T Consensus       726 i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y  803 (5163)
T PRK12316        726 VAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLY  803 (5163)
T ss_pred             ECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCc
Confidence            984   4689999999999999999999999999987543  33578999999999999999999999988889999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc---c
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW---G  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~---~  419 (435)
                      |+||++..+.............++|+|++|++++|+| +++++++.|++|||+|+|++++.|  |+++|+.|++.|   .
T Consensus       804 G~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Yl~~~~~t~~~f~~~~  880 (5163)
T PRK12316        804 GPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARG--YHGRPGLTAERFVPSP  880 (5163)
T ss_pred             CcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChh--hCCChhhhhhhCCCCC
Confidence            9999885544333222244567899999999999999 579999999999999999999999  999999999988   2


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                      +.+.++||+|||+++
T Consensus       881 ~~~~~~~y~TGDl~~  895 (5163)
T PRK12316        881 FVAGERMYRTGDLAR  895 (5163)
T ss_pred             CCCCCeeEecCccEE
Confidence            224457999999974

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-50  Score=401.04  Aligned_cols=395  Identities=31%  Similarity=0.468  Sum_probs=310.2

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.+.+..+|++.|+++.  ++.+||.||.+++.++|+.|.+.|+++||+|+++++|+.++++++|||+++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFL--GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV  101 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEec--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence            47899999999999999999986  5889999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCccccccc-----------------cccc
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGL-----------------ISRS  165 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----------------~~~~  165 (435)
                      +|++|.++.+++..+++.++++++++++.....+....    ...+++...........                 .+..
T Consensus       102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (563)
T PRK06710        102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES  181 (563)
T ss_pred             eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccccc
Confidence            99999999999999999999999999886654433221    11111111000000000                 0000


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHH
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~  245 (435)
                      .....+..+.....  .........++++++++|||||||.||+|.++|+++.................++++++..|++
T Consensus       182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~  259 (563)
T PRK06710        182 ETIHLWNSVEKEVN--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFF  259 (563)
T ss_pred             chhhhhhhhhhccc--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchH
Confidence            00001111111000  1111112235789999999999999999999999987553322221111122337889999999


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHH
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~  325 (435)
                      |.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++
T Consensus       260 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~  339 (563)
T PRK06710        260 HVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV  339 (563)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHH
Confidence            99998766778899999999998899999999999999999999999999999876656667789999999999999999


Q ss_pred             HHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccc
Q 013850          326 MEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI  405 (435)
Q Consensus       326 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~  405 (435)
                      .+++.+.++ .++++.||+||++......... ....++++|.+.+++.++++|++++.+++.|+.|||+++|+.++.| 
T Consensus       340 ~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~g-  416 (563)
T PRK06710        340 QEKFETVTG-GKLVEGYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKG-  416 (563)
T ss_pred             HHHHHHhhC-CCEecccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchh-
Confidence            999999886 8999999999988755433221 1334678999999999999998899999999999999999999999 


Q ss_pred             cccCCcccccccccccccCcceecCCCC
Q 013850          406 VYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       406 ~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                       |+++++.+...+    .++||+|||++
T Consensus       417 -Y~~~~~~~~~~~----~~g~~~TGD~~  439 (563)
T PRK06710        417 -YWNKPEETAAVL----QDGWLHTGDVG  439 (563)
T ss_pred             -hhCChHHHhhhc----ccCcccccceE
Confidence             999999998876    36799999976

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=8.3e-50  Score=394.62  Aligned_cols=378  Identities=25%  Similarity=0.369  Sum_probs=308.8

Q ss_pred             HHHHHhh-cccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEe
Q 013850           30 VHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST  108 (435)
Q Consensus        30 ~~~l~~~-~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~  108 (435)
                      .++|.++ ++.+|+++|+++.  +..+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~   84 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDD--ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA   84 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence            3455555 5779999999986  589999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcCCCCC
Q 013850          109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (435)
Q Consensus       109 i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (435)
                      +++.++.+++..+++.++++++++++...+.+....     ...++.....          ......+.++.....  ..
T Consensus        85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~  152 (508)
T TIGR02262        85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRP----------EAGEVQLAELLATES--EQ  152 (508)
T ss_pred             ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCC----------CcccccHHHHhhcCC--Cc
Confidence            999999999999999999999999987766554332     1122221110          111123333333222  22


Q ss_pred             CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHH-hhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                      ..+....++++++++|||||||.||+|.++|+++........ ....+  ..+|++++.+|++|.+++...++.++..|+
T Consensus       153 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  230 (508)
T TIGR02262       153 FKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGI--REDDVVFSAAKLFFAYGLGNALTFPMSVGA  230 (508)
T ss_pred             cCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCC--CCCCEEEEcCchHHHHHHHHHHHHHHHcCc
Confidence            233455678999999999999999999999999987755422 22222  333899999999999999767888899999


Q ss_pred             EEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          263 CVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       263 ~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      ++++.+ .+++..+++.|+++++|++.++|.++..+++.........+++|.+++||+++++++.+.|.+.++ +++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~~  309 (508)
T TIGR02262       231 TTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFG-VDIVDG  309 (508)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhC-CchhhC
Confidence            998875 468999999999999999999999999888765444455679999999999999999999999996 999999


Q ss_pred             cCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      ||+||++.+.......  ....+++|.|+++++++|+| +++.++++|+.|||+++|+.++.|  |+++++.+.+.|   
T Consensus       310 YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~g--Y~~~~~~~~~~~---  381 (508)
T TIGR02262       310 IGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATM--YWNNRAKTRDTF---  381 (508)
T ss_pred             ccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccc--cCCCHHHhHhhh---
Confidence            9999998765543332  34567899999999999999 799999999999999999999999  999999998877   


Q ss_pred             ccCcceecCCCC
Q 013850          422 HTDSFIRGKDQQ  433 (435)
Q Consensus       422 ~~~~~~~tgD~~  433 (435)
                       .++||+|||++
T Consensus       382 -~~~~~~TGD~~  392 (508)
T TIGR02262       382 -QGEWTRSGDKY  392 (508)
T ss_pred             -hcCceeccceE
Confidence             46788888865

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=6.8e-50  Score=397.20  Aligned_cols=379  Identities=22%  Similarity=0.278  Sum_probs=307.1

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|.++++  |+++|+++.  ++.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        25 ~~~~~~~~~~a~--p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         25 LPLTDILTRHAA--SDAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             ccHHHHHHHhhC--CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            579999988887  999999987  4899999999999999999999999999999999999999999999999999988


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEcccc--------HHHHhhcC--CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPEL--------WDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +++.+.....++..+++.++++.+++++..        .+.+....  ...+++...            .....+.+.+.
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~  168 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND------------DGEHSLDDAIN  168 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC------------CCCccHHHHhh
Confidence            877777778889999999999999998642        22232221  112222111            11223333333


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~  255 (435)
                      ...  ...+.....++++++++|||||||.||+|.++|+++...+........+..  ++++++.+|++|.+++.. .++
T Consensus       169 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~--~~~~l~~~p~~h~~~~~~~~~~  244 (536)
T PRK10946        169 HPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTP--QTRYLCALPAAHNYPMSSPGAL  244 (536)
T ss_pred             Ccc--cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC--CceEEEecCccccccchhhhHH
Confidence            222  222234456789999999999999999999999999998776655554433  399999999999988753 478


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcc--cccCCCCcceeEEEecCCCCcHHHHHHHHhhC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~--~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  333 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|.++..|++..  ......++++|.+++||+++++++.+++.+.+
T Consensus       245 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~  324 (536)
T PRK10946        245 GVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL  324 (536)
T ss_pred             HHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc
Confidence            8899999999998889999999999999999999999999998763  22334578999999999999999999999998


Q ss_pred             CCCeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcc
Q 013850          334 PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV  412 (435)
Q Consensus       334 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~  412 (435)
                      + +++++.||+||+....... .........++|+|+ +++.++|+| +++++++.|+.|||+++|+.++.|  ||++++
T Consensus       325 g-~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~G--Y~~~~~  399 (536)
T PRK10946        325 G-CQLQQVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRG--YYKSPQ  399 (536)
T ss_pred             C-CeEEEeecccccceeeecC-CCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchh--hcCCcc
Confidence            6 9999999999965433222 111133467899998 899999999 689999999999999999999999  999999


Q ss_pred             cccccccccccCcceecCCCC
Q 013850          413 FTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       413 ~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      .+.+.|   ..++||+|||++
T Consensus       400 ~t~~~~---~~d~~~~TGDl~  417 (536)
T PRK10946        400 HNASAF---DANGFYCSGDLV  417 (536)
T ss_pred             cchhhc---ccCCceecCceE
Confidence            988866   357899999977

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-50  Score=469.19  Aligned_cols=379  Identities=21%  Similarity=0.282  Sum_probs=316.1

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|++.|+++|++|++++++++++++++|||+++|+++
T Consensus      1574 ~~~~~~~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~ 1651 (3956)
T PRK12467       1574 RLVHQLIEDQAAATPEAVALVFG--EQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651 (3956)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCcee
Confidence            68999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC-CcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      +|++|.++.+++.++++.+++++++++......+..... ..+.+...                  ........  ...+
T Consensus      1652 vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~ 1711 (3956)
T PRK12467       1652 VPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQE------------------DDWLEGYS--DSNP 1711 (3956)
T ss_pred             eecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEeccc------------------cchhccCC--CCCC
Confidence            999999999999999999999999998876554432211 11111100                  01111111  2222


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||||+++|+++.+.+.+......+..  +|+++...|++|..+++ .++.+|..|++++
T Consensus      1712 ~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 1788 (3956)
T PRK12467       1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA--ADVVLQFTSFAFDVSVW-ELFWPLINGARLV 1788 (3956)
T ss_pred             CCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCc--ccEEEEecCccHHHHHH-HHHHHHhCCCEEE
Confidence            34457899999999999999999999999999988776655554433  39999999999999985 8899999999999


Q ss_pred             ecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       266 ~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +.+.   .++..+++.|+++++|++.++|+++..|.+... ....+++||.+++|||++++++.+.|.+.+++..++|.|
T Consensus      1789 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1867 (3956)
T PRK12467       1789 IAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLY 1867 (3956)
T ss_pred             EcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCc
Confidence            9853   479999999999999999999999999987532 234678999999999999999999999998878999999


Q ss_pred             CcccccccccccCCC---CCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          343 GMTETCAPISLENPL---VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~---~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      |+||++..++.....   .......++|+|+++++++|+| +++++++.|++|||+++|++++.|  |+++|+.|.+.|-
T Consensus      1868 G~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~G--Yl~~p~~t~~~f~ 1944 (3956)
T PRK12467       1868 GPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARG--YLNRPALTAERFV 1944 (3956)
T ss_pred             cCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccccc--ccCChhhhhhhCc
Confidence            999998766543222   1122356899999999999999 689999999999999999999999  9999999999881


Q ss_pred             --cc--ccCcceecCCCCC
Q 013850          420 --CE--HTDSFIRGKDQQT  434 (435)
Q Consensus       420 --~~--~~~~~~~tgD~~~  434 (435)
                        -+  ..++||+|||+++
T Consensus      1945 ~~p~~~~~~r~yrTGDl~~ 1963 (3956)
T PRK12467       1945 ADPFGTVGSRLYRTGDLAR 1963 (3956)
T ss_pred             CCCCCCCCccceeccceEE
Confidence              11  1346999999874

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.3e-49  Score=394.18  Aligned_cols=395  Identities=30%  Similarity=0.464  Sum_probs=311.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++.+|+++|+...  ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        21 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        21 GTLPDLLSKAAADYGPRPALEFR--DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CCHHHHHHHHHHHcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            48999999999999999999876  4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEcccc--HHHHhhc----CCCcEEeccCCccccccc----ccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPEL--WDKVKDL----NLPAVLLGSKDKVSSSGL----ISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  176 (435)
                      +|++|.++.+++..+++.++++.+++++..  .+.+...    ....+++...........    .........++++++
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK  178 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence            999999999999999999999999998631  1111111    111122211110000000    001122344555544


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh----ccCCCcEEEecchHHHHHHHHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL----VGELDHVVLCVLPMFHVFGLSV  252 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~----~~~~~d~~l~~~~l~~~~g~~~  252 (435)
                      ...  .........++++++++|||||||.||+|.++|+++....... .....    .....+++++..|++|.+++..
T Consensus       179 ~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~  255 (541)
T TIGR03205       179 GAA--APAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTV  255 (541)
T ss_pred             cCC--CCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence            322  1222334567899999999999999999999999987653321 11111    1122378999999999999877


Q ss_pred             HHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhh
Q 013850          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN  332 (435)
Q Consensus       253 ~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~  332 (435)
                      .++.++..|+++++...+++..+++.|+++++|++.++|+++..|.+........++++|.++.||+++++++.+++.+.
T Consensus       256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHH
Confidence            78899999999999988899999999999999999999999999987654445567899999999999999999999888


Q ss_pred             CCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEe-CCCCccCCCCCceeEEEeCCCccccccccCCc
Q 013850          333 IPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS-VDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF  411 (435)
Q Consensus       333 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~  411 (435)
                      ++ .++++.||+||++..+....... ...++++|.|++++.++|.+ .++++.++.|+.|||+++|++++.|  ||+++
T Consensus       336 ~~-~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~  411 (541)
T TIGR03205       336 TG-LKLKSGWGMTETCSPGTGHPPEG-PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG--YWNRP  411 (541)
T ss_pred             hC-CCeecccccccCCcccccCCCCC-CCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcccc--ccCCh
Confidence            86 99999999999987665543321 33567899999999998864 2678899999999999999999999  99999


Q ss_pred             ccccccccccccCcceecCCCCC
Q 013850          412 VFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       412 ~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.+.+.|    .++||+|||+++
T Consensus       412 ~~~~~~~----~~~~~~TGD~~~  430 (541)
T TIGR03205       412 EESAEAF----VGDRFLTGDIGY  430 (541)
T ss_pred             hhhHhhh----ccCCcccCceEE
Confidence            9998877    356888888753

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-49  Score=394.95  Aligned_cols=370  Identities=17%  Similarity=0.188  Sum_probs=294.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .|+.++|.+++  .|+++|+++.  +..+||.||.++++++|+.|.+.|+ .+||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~   78 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG--DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYV   78 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCE
Confidence            57888888765  6999999886  4899999999999999999999999 79999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC---CCcEEeccCCcccccccccccccccchhhhhhhcCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (435)
                      ++|++|.++.+++..+++.++++++|++++....+....   .+.+.+. .               ..+.+++....  .
T Consensus        79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~-~---------------~~~~~~~~~~~--~  140 (540)
T PRK13388         79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVD-T---------------PAYAELVAAAG--A  140 (540)
T ss_pred             EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEcc-c---------------hhhhhhhcccc--C
Confidence            999999999999999999999999999987766655432   1111111 0               11222222111  1


Q ss_pred             CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                      ..+.....++++++|+|||||||.||+|.++|+++............+.  .+|++++.+|++|.+++...++.++..|+
T Consensus       141 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  218 (540)
T PRK13388        141 LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLT--RDDVCYVSMPLFHSNAVMAGWAPAVASGA  218 (540)
T ss_pred             cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCC--CCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence            1122335679999999999999999999999999987766555544443  34999999999999998756677899999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       263 ~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++++.+.+++..+++.++++++|++..+|..+..+............++|.+ + |++++++..+.+.+.++ .++++.|
T Consensus       219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~Y  295 (540)
T PRK13388        219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGY  295 (540)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHhC-Cceeccc
Confidence            9999988899999999999999999999999999887654333334466643 3 55678888899999886 9999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEE-----------EEeCCCCccC-CCCCceeEEEe-CCCccccccccC
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQ-----------IVSVDTLKPL-PPNQLGEIWVR-GPNVTPGIVYIN  409 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-----------i~d~~~~~~~-~~g~~Gei~v~-g~~~~~g~~y~~  409 (435)
                      |+||++.++....    ..+.+++|+|++|+++.           ++| ++|+.+ +.++.|||+++ |++++.|  ||+
T Consensus       296 G~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~g--Y~~  368 (540)
T PRK13388        296 GSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEG--YYN  368 (540)
T ss_pred             ccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCccccc--ccC
Confidence            9999987664321    23567899999997652           344 345555 34679999998 9999999  999


Q ss_pred             CcccccccccccccCcceecCCCCC
Q 013850          410 FFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++.+.+.|    .+|||+|||+++
T Consensus       369 ~~~~t~~~~----~~g~~~TGD~~~  389 (540)
T PRK13388        369 NPEATAERM----RHGMYWSGDLAY  389 (540)
T ss_pred             ChHHHHHHh----hcCceeccceEE
Confidence            999998877    357888888763

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-49  Score=393.97  Aligned_cols=366  Identities=19%  Similarity=0.249  Sum_probs=295.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|.++++.+|+++|+++.  +..+||.||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus        35 ~~~~~~~~~~a~~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         35 TNPYTLLAVTAARWPGRTAIIDD--DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             CcHHHHHHHHHHHCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            78999999999999999999976  4789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++.++.+++..+++.++++.+++++...+.+.........+...                ... ..   .  ...  
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~---~--~~~--  168 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPA----------------TAG-AE---E--SGG--  168 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccc----------------hhh-hh---c--CCC--
Confidence            99999999999999999999999999988776655443222221110                000 00   0  000  


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHH--HHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEE
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM--ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~--~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i  264 (435)
                      .....++.++|+|||||||.||+|.++|.........  ......+  ..+++++..+|++|.+++. .++.++..|+++
T Consensus       169 ~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~  245 (516)
T PRK13383        169 RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRL--RTGSRISVAMPMFHGLGLG-MLMLTIALGGTV  245 (516)
T ss_pred             CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhcc--CCCCeEEEecCCcchhhHH-HHHHHHhcCCEE
Confidence            0112355679999999999999999999743221111  1111222  2348999999999999995 677889999999


Q ss_pred             EecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++...+++..+++.++++++|.+.++|+++..|.+....  ....++++|.+++||+++++++.++|.+.++ .++++.|
T Consensus       246 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~Y  324 (516)
T PRK13383        246 LTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGY  324 (516)
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC-chhhhcc
Confidence            999889999999999999999999999999999875432  2345789999999999999999999999997 8999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccc
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  422 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~  422 (435)
                      |+||++....... .......+++|+|+++++++|+| ++++++++|+.|||+++|+.++.|  |++++...   +    
T Consensus       325 G~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~--Y~~~~~~~---~----  393 (516)
T PRK13383        325 GSTEVGIGALATP-ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTR--YTDGGGKA---V----  393 (516)
T ss_pred             cccccccceeccc-cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCccccc--ccCCchhh---e----
Confidence            9999986554332 22234567899999999999999 578999999999999999999999  99876421   1    


Q ss_pred             cCcceecCCCC
Q 013850          423 TDSFIRGKDQQ  433 (435)
Q Consensus       423 ~~~~~~tgD~~  433 (435)
                      .+||++|||++
T Consensus       394 ~~g~~~TGDl~  404 (516)
T PRK13383        394 VDGMTSTGDMG  404 (516)
T ss_pred             ecCceecceeE
Confidence            35788888865

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-49  Score=397.67  Aligned_cols=400  Identities=22%  Similarity=0.290  Sum_probs=311.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecC-CCcceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD-SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      .|+.++|.+.+..+|++.|+++.+ ..+.+||.||.+++.++|++|++ .|+++||+|+++++|+.+++++++||+++|+
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~   89 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA   89 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence            789999999999999999998643 24789999999999999999986 7999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccc-cccccccccccchhhhhhhc
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSS-SGLISRSSKIVSFHDLIELS  178 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  178 (435)
                      +++|++|..+.+++.++++.++++++|+++...+.+....     .+.+++........ ...........+|+++.+..
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  169 (576)
T PRK05620         90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR  169 (576)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence            9999999999999999999999999999987666554322     12222222111000 00001122345677776543


Q ss_pred             CCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhh
Q 013850          179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (435)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l  258 (435)
                      .  .........++++++++|||||||.||+|.++|+++............+....++++++.+|++|.+++. ..+.++
T Consensus       170 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~~~l  246 (576)
T PRK05620        170 S--TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWG-VPLAAF  246 (576)
T ss_pred             C--CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhH-HHHHHH
Confidence            2  2233345678999999999999999999999999986654332221112223349999999999999985 678889


Q ss_pred             hcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCe
Q 013850          259 QKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (435)
Q Consensus       259 ~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  337 (435)
                      ..|+++++.. .+++..+++.++++++|.+.++|+++..|+...........+||.+++||+++++++.++|++.++ ++
T Consensus       247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~-~~  325 (576)
T PRK05620        247 MSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYG-VD  325 (576)
T ss_pred             hcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence            9999998875 578999999999999999999999999888754433344568999999999999999999999986 99


Q ss_pred             eecCcCcccccccccccCCCCC------CcCCCCcccccCCcEEEEEeCCCCccCC--CCCceeEEEeCCCccccccccC
Q 013850          338 IFQGYGMTETCAPISLENPLVG------VRRSGSAGTLVAGVEAQIVSVDTLKPLP--PNQLGEIWVRGPNVTPGIVYIN  409 (435)
Q Consensus       338 ~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~Gei~v~g~~~~~g~~y~~  409 (435)
                      +++.||+||++.......+.+.      .....++|++.++++++|+| + +..++  .++.|||+++|+.++.|  ||+
T Consensus       326 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~g--Y~~  401 (576)
T PRK05620        326 VVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTAS--YYH  401 (576)
T ss_pred             eeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCccccc--ccC
Confidence            9999999999876554333211      01134789999999999999 4 66554  47899999999999999  999


Q ss_pred             Ccccc----cccc---------cccccCcceecCCCCC
Q 013850          410 FFVFT----LFLW---------GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       410 ~~~~~----~~~~---------~~~~~~~~~~tgD~~~  434 (435)
                      +++.+    ...|         ..+..++||+|||+++
T Consensus       402 ~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~  439 (576)
T PRK05620        402 SPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGS  439 (576)
T ss_pred             CccccccccccccccccchhhhcccccCCcEecCceEE
Confidence            99987    3322         0123468999999864

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.2e-50  Score=473.88  Aligned_cols=379  Identities=20%  Similarity=0.247  Sum_probs=314.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.+  +.+||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~~--~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~ 2080 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFGD--QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY 2080 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcCC--CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEE
Confidence            589999999999999999999874  899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|++|.++.+++.++++.++++++++++.....+..... ...+..+.                .... ....  ...+.
T Consensus      2081 vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~-~~~~--~~~~~ 2140 (5163)
T PRK12316       2081 VPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAG-VARLPLDR----------------DAEW-ADYP--DTAPA 2140 (5163)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccc-cceEeccc----------------hhhh-hccC--ccCCC
Confidence            999999999999999999999999999876554422111 00111000                0000 0001  12223


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||||+++|+++.+.+........+..  +|+++...|++|..++. .++.+|..|+++++
T Consensus      2141 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~~~~-~~~~~L~~G~~~~~ 2217 (5163)
T PRK12316       2141 VQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSP--ADCELQFMSFSFDGAHE-QWFHPLLNGARVLI 2217 (5163)
T ss_pred             CCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCC--cceEEEecCchHHHHHH-HHHHHHhCCCEEEe
Confidence            4567899999999999999999999999999998877666555533  39999999999998884 89999999999988


Q ss_pred             cC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850          267 MG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  344 (435)
Q Consensus       267 ~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~  344 (435)
                      .+  .+++..+++.++++++|++.++|+++..|.+...... ..++||.+++|||++++++.++|.+.+++.+++|.||+
T Consensus      2218 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 2296 (5163)
T PRK12316       2218 RDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGP 2296 (5163)
T ss_pred             CCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccc
Confidence            75  3589999999999999999999999999987654332 34589999999999999999999998888999999999


Q ss_pred             ccccccccccCCCCCCc---CCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc--c
Q 013850          345 TETCAPISLENPLVGVR---RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW--G  419 (435)
Q Consensus       345 tE~~~~~~~~~~~~~~~---~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~--~  419 (435)
                      ||++..++.........   ...++|+|++|++++|+| +++++++.|++|||+|+|++++.|  ||++|+.|.+.|  .
T Consensus      2297 TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~ 2373 (5163)
T PRK12316       2297 TEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARG--YLNRPGLTAERFVPD 2373 (5163)
T ss_pred             hhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhccc--ccCChhhhhhhccCC
Confidence            99987665433221111   235799999999999999 588999999999999999999999  999999999988  1


Q ss_pred             -ccc-cCcceecCCCCC
Q 013850          420 -CEH-TDSFIRGKDQQT  434 (435)
Q Consensus       420 -~~~-~~~~~~tgD~~~  434 (435)
                       +.. .++||+|||+++
T Consensus      2374 ~~~~~~~~~yrTGDl~~ 2390 (5163)
T PRK12316       2374 PFSASGERLYRTGDLAR 2390 (5163)
T ss_pred             CCCCCCCeeEecccEEE
Confidence             211 357999999984

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.6e-50  Score=398.98  Aligned_cols=370  Identities=16%  Similarity=0.219  Sum_probs=282.6

Q ss_pred             hHHHHHhhcccCCCceeeeecCCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           29 MVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        29 l~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +.+.|.++++++|+++|+++.+.+  +.+||+||.++++++|+.|.++  ++||+|+|+++|++++++++|||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            788899999999999999988544  6899999999999999999987  899999999999999999999999999986


Q ss_pred             EecCCC-------CCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850          107 STANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (435)
Q Consensus       107 v~i~~~-------~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (435)
                      ++++..       ...+++..+++.++++++|+++.....+........+ .                  .+....... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~-  141 (525)
T PRK05851         82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSVTV-H------------------DLATAAHTN-  141 (525)
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhccccc-c------------------ccccccccc-
Confidence            543211       1234556678999999999988766554432211100 0                  000000000 


Q ss_pred             CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~  259 (435)
                        .........++++++|+|||||||.||+|.++|+++.+.+........+. ..+|++++.+|++|.+++. .++.++.
T Consensus       142 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~-~~~~~l~  217 (525)
T PRK05851        142 --RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYHDMGLA-FLLTAAL  217 (525)
T ss_pred             --ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCC-CCCCeEEEcCCCccCccHH-HHHHHHH
Confidence              00011224678999999999999999999999999998877665544442 1349999999999999995 7889999


Q ss_pred             cCcEEEecCC--C--CHHHHHHHHHhcCceEEEecHHHHHHHHhccc-ccCCCCcceeEEEecCCCCcHHHHHHHHhh--
Q 013850          260 KGNCVVSMGK--F--DIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISSLKLVGSGAAPLGKELMEDCQKN--  332 (435)
Q Consensus       260 ~G~~i~~~~~--~--~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~--  332 (435)
                      .|+++++.+.  +  ++..+++.++++++|++...|.++..+.+... ....++++||.+++||+++++++.++|.+.  
T Consensus       218 ~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~  297 (525)
T PRK05851        218 AGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMA  297 (525)
T ss_pred             cCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHh
Confidence            9999999863  4  67889999999999988655555555544321 234567899999999999999999999875  


Q ss_pred             -CC--CCeeecCcCcccccccccccCCCC-------------CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEE
Q 013850          333 -IP--GATIFQGYGMTETCAPISLENPLV-------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV  396 (435)
Q Consensus       333 -~~--~~~~~~~yG~tE~~~~~~~~~~~~-------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v  396 (435)
                       ++  +.++++.||+||++..+....+..             ...+.+++|+|++|++++|+|++.+.+++.|+.|||++
T Consensus       298 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v  377 (525)
T PRK05851        298 PFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEI  377 (525)
T ss_pred             hcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEE
Confidence             33  246999999999986655432211             01234689999999999999966566789999999999


Q ss_pred             eCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          397 RGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       397 ~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|++++.|  ||++++.+        .++||+|||+++
T Consensus       378 ~g~~~~~G--Y~~~~~~~--------~~~~~~TGDl~~  405 (525)
T PRK05851        378 RGASMMSG--YLGQAPID--------PDDWFPTGDLGY  405 (525)
T ss_pred             ecCchhhc--cccCCccC--------CCCceeccceEE
Confidence            99999999  99998753        356888888763

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.2e-49  Score=400.50  Aligned_cols=394  Identities=19%  Similarity=0.222  Sum_probs=292.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCC-C--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADS-D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~-~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .|+.+.+.++   .++++|++..+. +  +.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus        87 ~n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~G  163 (652)
T TIGR01217        87 LNYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVG  163 (652)
T ss_pred             eeHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence            7788887764   467888876432 2  589999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH---------HHHhhc----C-CCcEEeccCCccccccccccccccc
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIV  169 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~  169 (435)
                      ++++|+++.++.+++..++++++|+++|+++...         +.+...    . .+.+++......... .........
T Consensus       164 av~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  242 (652)
T TIGR01217       164 AIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRET-EAPKIDGAL  242 (652)
T ss_pred             eEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccc-ccccccCcc
Confidence            9999999999999999999999999999987532         222211    1 122222111000000 000011234


Q ss_pred             chhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHH-HHHhhhhhccCCCcEEEecchHHHHH
Q 013850          170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCVLPMFHVF  248 (435)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~d~~l~~~~l~~~~  248 (435)
                      .++++...... .........++++++|+|||||||.||||+++|.+++.... .......+  ..+|++++.+++.|++
T Consensus       243 ~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~  319 (652)
T TIGR01217       243 DLEDFTAAAQA-AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL--GPGDRLFYYTTTGWMM  319 (652)
T ss_pred             cHHHHHhcccC-CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCC--CCCcEEEEeCCcchhh
Confidence            45665543211 12223345678999999999999999999999998764322 22222223  3349999999999986


Q ss_pred             HHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCc
Q 013850          249 GLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       249 g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~  322 (435)
                      ..  .++.+|..|+++++.+.    .++..++++++++++|++..+|.++..|.+...  ....++++||.+++||++++
T Consensus       320 ~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~  397 (652)
T TIGR01217       320 WN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLP  397 (652)
T ss_pred             hH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCC
Confidence            43  35689999999999852    278899999999999999888888877765421  23467899999999999999


Q ss_pred             HHHHHHHHhhCC-CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC--
Q 013850          323 KELMEDCQKNIP-GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--  399 (435)
Q Consensus       323 ~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~--  399 (435)
                      +++.+++.+.++ +..+.+.||+||+++......+.. ....+++|.|.+|++++|+| ++|+++ +|+.|||+++||  
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p  474 (652)
T TIGR01217       398 PDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTL-PVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMP  474 (652)
T ss_pred             HHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCC-CCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEecCCC
Confidence            999999999886 356789999999754433222221 33567899999999999999 578888 599999999996  


Q ss_pred             CccccccccCCcccccccccccc-cCcceecCCCCC
Q 013850          400 NVTPGIVYINFFVFTLFLWGCEH-TDSFIRGKDQQT  434 (435)
Q Consensus       400 ~~~~g~~y~~~~~~~~~~~~~~~-~~~~~~tgD~~~  434 (435)
                      +++.|  ||++++.+...-.++. .+||++|||+++
T Consensus       475 ~~~~g--y~~~~~~t~~~~~~~~~~~g~~~tGDlg~  508 (652)
T TIGR01217       475 SMPIR--FWNDPDGSKYRDAYFDTYPGVWRHGDWIT  508 (652)
T ss_pred             ccccc--eeCCCccchhHHhhhcCCCCEEEcCCcEE
Confidence            68999  9999987652222232 257888899864

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-49  Score=390.09  Aligned_cols=371  Identities=19%  Similarity=0.215  Sum_probs=301.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .|+.++|.+.+.  ++++|++..  ++.+||.||.++++++|++|+++ |++++++|+++++|+++++++++||+++|++
T Consensus         5 ~~~~~~l~~~a~--~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~   80 (529)
T PRK07867          5 PTVAELLLPLAE--DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV   80 (529)
T ss_pred             ccHHHHHHHhcc--cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            688999988774  789999876  48999999999999999999986 8999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      ++|+++.++.+++..+++.++++++|++++....+........++..+              ...+.+++..... ....
T Consensus        81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~-~~~~  145 (529)
T PRK07867         81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVD--------------SPAWADELAAHRD-AEPP  145 (529)
T ss_pred             EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEec--------------cccHHHHhcccCC-CCCC
Confidence            999999999999999999999999999988776555432111221111              0123333322111 1122


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||+|.++|+++..........+.+.  ..|++++.+|++|.+++...++.++..|++++
T Consensus       146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  223 (529)
T PRK07867        146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLG--PDDVCYVSMPLFHSNAVMAGWAVALAAGASIA  223 (529)
T ss_pred             cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCC--cccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence            3345789999999999999999999999999988766655554443  34999999999999999777888999999999


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcc
Q 013850          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT  345 (435)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~t  345 (435)
                      +.+.+++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.+ .+|.+.++ +++++.||+|
T Consensus       224 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~~YG~T  300 (529)
T PRK07867        224 LRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRFG-CVVVDGFGST  300 (529)
T ss_pred             ecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHhC-CcEEEeeccc
Confidence            998899999999999999999999999999988765433334467885 46888887664 67778886 9999999999


Q ss_pred             cccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCC------------ceeEEE-eCCCccccccccCCcc
Q 013850          346 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ------------LGEIWV-RGPNVTPGIVYINFFV  412 (435)
Q Consensus       346 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~------------~Gei~v-~g~~~~~g~~y~~~~~  412 (435)
                      |++..+....    ....+++|.|+++  ++++|++++.+++.|+            .|||++ +|++++.|  ||++++
T Consensus       301 E~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~g--y~~~~~  372 (529)
T PRK07867        301 EGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEG--YYNDPE  372 (529)
T ss_pred             ccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCccccc--ccCChH
Confidence            9886554321    2345789999998  7788877889999988            999998 99999999  999999


Q ss_pred             cccccccccccCcceecCCCC
Q 013850          413 FTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       413 ~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      .+.+.+    .+|||+|||++
T Consensus       373 ~~~~~~----~~g~~~TGD~~  389 (529)
T PRK07867        373 ADAERM----RGGVYWSGDLA  389 (529)
T ss_pred             hhhhhh----cCCeEeeccEE
Confidence            998877    46788888875

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-49  Score=391.89  Aligned_cols=389  Identities=20%  Similarity=0.248  Sum_probs=304.3

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      .++.++|.+.++.+|++.++.+...+  +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~   89 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA   89 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            57899999999999999888754222  6799999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (435)
                      +++|++|.++.+++..+++.++++++++++++.+.+....     ...++...+...  ..  .......+++++.....
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~  165 (539)
T PRK07008         90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAH--LP--AGSTPLLCYETLVGAQD  165 (539)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCc--cc--cCCcccccHHHHhcccC
Confidence            9999999999999999999999999999987766554332     111121111110  00  01122445666554332


Q ss_pred             CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~  259 (435)
                        .........++++++++|||||||.||+|.+||+++............+....+|+++...|++|.+++. .++.++.
T Consensus       166 --~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~  242 (539)
T PRK07008        166 --GDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWG-LPYSAPL  242 (539)
T ss_pred             --CCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHH-HHHHHHh
Confidence              2222345567899999999999999999999999986543221111112223349999999999988774 5677889


Q ss_pred             cCcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCee
Q 013850          260 KGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (435)
Q Consensus       260 ~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~  338 (435)
                      .|+++++. +.+++..+++.++++++|++.++|+++..|++.......++++||.++++|+++++++.+++++.++ .++
T Consensus       243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l  321 (539)
T PRK07008        243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYG-VEV  321 (539)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhC-Cce
Confidence            99999987 4578999999999999999999999999999887666678899999999999999999999999996 999


Q ss_pred             ecCcCcccccccccccCCCC---------CCcCCCCcccccCCcEEEEEeCCCCccCCCC--CceeEEEeCCCccccccc
Q 013850          339 FQGYGMTETCAPISLENPLV---------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPGIVY  407 (435)
Q Consensus       339 ~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gei~v~g~~~~~g~~y  407 (435)
                      ++.||+||++..+.......         ......++|+|+|+++++|+| +++..++.+  +.|||+++|+.++.|  |
T Consensus       322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~g--y  398 (539)
T PRK07008        322 IHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDR--Y  398 (539)
T ss_pred             ecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchh--h
Confidence            99999999987554332110         011246789999999999999 477777753  579999999999999  9


Q ss_pred             cCCcccccccccccccCcceecCCCC
Q 013850          408 INFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      |++++.   .+    .+|||+|||++
T Consensus       399 ~~~~~~---~~----~~g~~~TGD~~  417 (539)
T PRK07008        399 FRGDAS---PL----VDGWFPTGDVA  417 (539)
T ss_pred             cCChhh---hh----cCCCcccCceE
Confidence            998842   22    14678888765

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1e-49  Score=466.72  Aligned_cols=383  Identities=16%  Similarity=0.217  Sum_probs=315.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.+  ..+||+||.++++++|+.|++.|+++|++|+|++++++++++++||++++|+++
T Consensus      3720 ~~~~~~~~~~~~~~p~~~Av~~~~--~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691       3720 QSYVRLFEAQVAAHPQRIAASCLD--QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred             cCHHHHHHHHHHhCCCceEEEcCC--CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence            689999999999999999999884  789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|++|.++.+++.++++.++++++++++.................             ......+++....... ...+.
T Consensus      3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~ 3863 (4334)
T PRK05691       3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCAN-------------RPRLLVWEEVQAGEVA-SHNPG 3863 (4334)
T ss_pred             eCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhccccccc-------------ccceeeeccccccccc-ccCCC
Confidence            999999999999999999999999999875443222211000000             0000001111110100 11223


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....+++++||+|||||||.||||+++|+++.+.+.+......+...  ++++...++++..+++ .++.++..|+++++
T Consensus      3864 ~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~fd~s~~-~~~~~l~~G~~l~i 3940 (4334)
T PRK05691       3864 IYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEA--DVIAQTASQSFDISVW-QFLAAPLFGARVEI 3940 (4334)
T ss_pred             CCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCcc--ceEEEecCCchhHHHH-HHHHHHhCCCEEEE
Confidence            44578999999999999999999999999999998776665555433  9999999999999985 88999999999999


Q ss_pred             cCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      .+.   .++..+++.++++++|++.++|+++..|+...   ...+++||.+++|||++++++.++|.+.+++++++|.||
T Consensus      3941 ~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 4017 (4334)
T PRK05691       3941 VPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYG 4017 (4334)
T ss_pred             cCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCcc
Confidence            853   57899999999999999999999999987643   235789999999999999999999999988899999999


Q ss_pred             cccccccccccCCCCC--CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc--c
Q 013850          344 MTETCAPISLENPLVG--VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW--G  419 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~--~  419 (435)
                      +||++..++.......  .....++|+|++|+++.|+| +.+++++.|.+|||+|+|++++.|  |+++|+.|.++|  .
T Consensus      4018 ~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~G--Y~~~~~~t~~~f~~~ 4094 (4334)
T PRK05691       4018 PAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRG--YVGDPLRTALAFVPH 4094 (4334)
T ss_pred             CccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEeccccccc--ccCCcccchhhcccC
Confidence            9999876654322211  22345799999999999999 789999999999999999999999  999999999998  1


Q ss_pred             cc--ccCcceecCCCCC
Q 013850          420 CE--HTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~--~~~~~~~tgD~~~  434 (435)
                      -+  ..++||||||+++
T Consensus      4095 p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4095 PFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             CCCCCCceeeccCccee
Confidence            11  2457999999985

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=8.3e-49  Score=391.97  Aligned_cols=396  Identities=23%  Similarity=0.365  Sum_probs=311.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .++.+.|.+++.++|+++|+++.  ++.+||.||.+++.++|+.|+ +.|+++||+|+++++|++++++++|||+++|++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  102 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLT  102 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeE
Confidence            47899999999999999999976  589999999999999999997 689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccC-Cc---ccc------------ccccccc
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSK-DK---VSS------------SGLISRS  165 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~-~~---~~~------------~~~~~~~  165 (435)
                      ++|++|.++.+++..+++.++++++++++.....+....    ...+++... ..   ...            .......
T Consensus       103 ~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (560)
T PRK08751        103 VVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRI  182 (560)
T ss_pred             EeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCC
Confidence            999999999999999999999999999987765544322    111221110 00   000            0000000


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc---cCCCcEEEecc
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV---GELDHVVLCVL  242 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~---~~~~d~~l~~~  242 (435)
                      .....+.+....... .........++++++++|||||||.||+|.++|.++..............   ...++++++..
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (560)
T PRK08751        183 NGAIRFREALALGRK-HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITAL  261 (560)
T ss_pred             CccccHHHHHhccCC-CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEec
Confidence            111223333322211 11223445778999999999999999999999999987765543332221   11226788889


Q ss_pred             hHHHHHHHHHHHHhhhhcCcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCC
Q 013850          243 PMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL  321 (435)
Q Consensus       243 ~l~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l  321 (435)
                      |++|.+++....+.++..|++.++. ..+++..+++.++++++|++.++|.++..+.+.......++++||.+++||+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~  341 (560)
T PRK08751        262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAV  341 (560)
T ss_pred             ChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCC
Confidence            9999999865566677777776655 467899999999999999999999999999987666666788999999999999


Q ss_pred             cHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCc
Q 013850          322 GKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV  401 (435)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~  401 (435)
                      ++.+.+.|++.++ +++++.||+||++..+...... .....+++|.|.++++++|+| +++..++.|+.|||+++|+.+
T Consensus       342 ~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~  418 (560)
T PRK08751        342 QRSVAERWKQVTG-LTLVEAYGLTETSPAACINPLT-LKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQV  418 (560)
T ss_pred             CHHHHHHHHHHhC-CeEEEeeccccCCCceeccccc-ccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCcc
Confidence            9999999999886 8999999999998766544322 234567899999999999999 688999999999999999999


Q ss_pred             cccccccCCcccccccccccccCcceecCCCC
Q 013850          402 TPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       402 ~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      +.|  ||++++.+.+.+   +.+|||+|||++
T Consensus       419 ~~g--y~~~~~~~~~~~---~~~g~~~TGD~~  445 (560)
T PRK08751        419 MKG--YWKRPEETAKVM---DADGWLHTGDIA  445 (560)
T ss_pred             chh--hcCChhhhhhcc---ccCCCccccceE
Confidence            999  999999988765   356899999976

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.4e-49  Score=396.01  Aligned_cols=388  Identities=19%  Similarity=0.265  Sum_probs=302.6

Q ss_pred             CCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        24 ~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      ....|+.+.|.++++++|+++|+++.  ++.+||.||.++++++|+.|++.|+++||+|+++++|+.+++++++||+++|
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G  111 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE--DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG  111 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            34479999999999999999999987  4899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCC-----CcEEeccCCcccccccccccccccchhhhhhhc
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (435)
                      ++++|+++.++.+++..+++.++++++|++++..+.+.....     ..++...+...      .   ....+.++....
T Consensus       112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~  182 (600)
T PRK08279        112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTL------D---DPEGYEDLAAAA  182 (600)
T ss_pred             cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccc------c---ccccHHHHhhhc
Confidence            999999999999999999999999999999887766544321     11222111000      0   011222222211


Q ss_pred             CCC-C--CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHH
Q 013850          179 GSV-T--DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY  255 (435)
Q Consensus       179 ~~~-~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~  255 (435)
                      ... .  ........++++++|+|||||||.||+|.++|+++...+........+..  +|++++.+|++|.+++...++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~--~d~~l~~~pl~h~~g~~~~~~  260 (600)
T PRK08279        183 AGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTP--DDVLYCCLPLYHNTGGTVAWS  260 (600)
T ss_pred             ccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCC--CcEEEEecCchhhhhHHHHHH
Confidence            110 1  11223456789999999999999999999999999998777655544433  399999999999999987778


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|++++.+++..........++|.+  +|+.+++++.++|.+.++.
T Consensus       261 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~  338 (600)
T PRK08279        261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGI  338 (600)
T ss_pred             HHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCc
Confidence            88999999999999999999999999999999999999999988755444456677764  4677999999999999985


Q ss_pred             CeeecCcCcccccccccccCCCCCCcCCCCcccccC----CcEE---------EEEeCCC-CccCCCCCceeEE--EeCC
Q 013850          336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA----GVEA---------QIVSVDT-LKPLPPNQLGEIW--VRGP  399 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~---------~i~d~~~-~~~~~~g~~Gei~--v~g~  399 (435)
                      ..+++.||+||++......     ....+++|.+.+    +..+         .+.+.+. ...+++|+.|||+  ++|+
T Consensus       339 ~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~  413 (600)
T PRK08279        339 PRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDR  413 (600)
T ss_pred             ceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCc
Confidence            6799999999987533221     234567776655    3333         2333111 1357889999998  7899


Q ss_pred             CccccccccCCcccccccc--c-ccccCcceecCCCCC
Q 013850          400 NVTPGIVYINFFVFTLFLW--G-CEHTDSFIRGKDQQT  434 (435)
Q Consensus       400 ~~~~g~~y~~~~~~~~~~~--~-~~~~~~~~~tgD~~~  434 (435)
                      +++.|  | ++++.+.+.+  . +...++||+|||+++
T Consensus       414 ~~~~G--Y-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~  448 (600)
T PRK08279        414 GPFDG--Y-TDPEASEKKILRDVFKKGDAWFNTGDLMR  448 (600)
T ss_pred             ccccc--c-CCchhhHHHHhhcccCCCCceEeecceEE
Confidence            99999  9 8898887765  1 123468999999874

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.4e-49  Score=389.73  Aligned_cols=394  Identities=21%  Similarity=0.268  Sum_probs=305.5

Q ss_pred             CCCCCCCchHHHHHhhcccCCCceeeeecCCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHH
Q 013850           21 LPSDPSFSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (435)
Q Consensus        21 ~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA   98 (435)
                      ++...++|+.++|.++++++|++++++....+  +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la   83 (542)
T PRK06018          4 LMQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG   83 (542)
T ss_pred             hhhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Confidence            45556689999999999999999999853223  6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhh
Q 013850           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (435)
Q Consensus        99 ~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (435)
                      |+++|++++|+++.++.+++..+++.++++.++++.+..+.+....     .+.+++..+...   ...........+.+
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  160 (542)
T PRK06018         84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH---MPQTTLKNAVAYEE  160 (542)
T ss_pred             HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc---ccccCccccccHHH
Confidence            9999999999999999999999999999999999987766554322     122222211100   00011112334555


Q ss_pred             hhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHH--HHHhhhhhccCCCcEEEecchHHHHHHHH
Q 013850          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL--MISAHQELVGELDHVVLCVLPMFHVFGLS  251 (435)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~--~~~~~~~~~~~~~d~~l~~~~l~~~~g~~  251 (435)
                      ++....  .........++++++|+|||||||.||+|.+||++.+....  .......+  ..+|+++...|++|.+++.
T Consensus       161 ~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~h~~~~~  236 (542)
T PRK06018        161 WIAEAD--GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGT--SAADTMLPVVPLFHANSWG  236 (542)
T ss_pred             HhccCC--cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCC--CCCCEEEEecCHHHHhhhH
Confidence            544332  22223445678899999999999999999999997532211  11112222  3339999999999999885


Q ss_pred             HHHHhhhhcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHH
Q 013850          252 VILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ  330 (435)
Q Consensus       252 ~~~~~~l~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~  330 (435)
                       ..+.++..|+++++.. .+++..+++.++++++|++.++|+++..|.+.......++++||.++++|+++++++.++|+
T Consensus       237 -~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~  315 (542)
T PRK06018        237 -IAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFE  315 (542)
T ss_pred             -HHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHH
Confidence             5567889999998874 57899999999999999999999999999987766666789999999999999999999999


Q ss_pred             hhCCCCeeecCcCcccccccccccCCCCC---------CcCCCCcccccCCcEEEEEeCCCCccCCCC--CceeEEEeCC
Q 013850          331 KNIPGATIFQGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGP  399 (435)
Q Consensus       331 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gei~v~g~  399 (435)
                      + ++ +++++.||+||++.++......+.         .....++|+|.++++++|+|+ +++.++.+  ..|||+++|+
T Consensus       316 ~-~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~-~~~~~~~~~~~~Gel~i~g~  392 (542)
T PRK06018        316 D-MG-VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD-AGKELPWDGKTFGRLKVRGP  392 (542)
T ss_pred             H-hC-CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC-CCCCCCCCCCceeEEEEecC
Confidence            9 75 999999999999876554321110         012357899999999999994 77777653  6899999999


Q ss_pred             CccccccccCCcccccccccccccCcceecCCCC
Q 013850          400 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       400 ~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      +++.|  ||++..   .   .++.++||+|||++
T Consensus       393 ~~~~g--y~~~~~---~---~~~~~~~~~TGDl~  418 (542)
T PRK06018        393 AVAAA--YYRVDG---E---ILDDDGFFDTGDVA  418 (542)
T ss_pred             Ccchh--hhcCcc---c---EecCCcEEEcCCEE
Confidence            99999  998322   2   22356789999875

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=4.8e-49  Score=389.10  Aligned_cols=377  Identities=19%  Similarity=0.230  Sum_probs=310.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +++.+.|.++++.+|+++++...  +..+||.||.+.++++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~   79 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAY   79 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            46889999999999999999876  4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcC-CCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG-SVTDIP  185 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  185 (435)
                      +|+++.++.+++..+++..+++++++++.....    ......                   ..++++..... ......
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------~~~~~~~~~~~~~~~~~~  136 (503)
T PRK04813         80 IPVDVSSPAERIEMIIEVAKPSLIIATEELPLE----ILGIPV-------------------ITLDELKDIFATGNPYDF  136 (503)
T ss_pred             ecCCCCChHHHHHHHHHhcCCCEEEeccccccc----ccCCcE-------------------EehHHhhhhhhccccccc
Confidence            999999999999999999999999998765110    000000                   11111111100 001112


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++++|||||||.||+|.++|+++...+.+......+.  ..++++...|++|..++. .++.++..|++++
T Consensus       137 ~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~v  213 (503)
T PRK04813        137 DHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALP--EGPQFLNQAPYSFDLSVM-DLYPTLASGGTLV  213 (503)
T ss_pred             cccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCC--cCceeeecCCcchhHhHH-HHHHHHhcCCEEE
Confidence            3345678899999999999999999999999998877665554443  338999999999999884 7789999999999


Q ss_pred             ecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       266 ~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +.+.   .++..+++.++++++|++.++|+++..+..........++++|.++++|+++++.+.+++.+.+++.++++.|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~y  293 (503)
T PRK04813        214 ALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTY  293 (503)
T ss_pred             EcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCc
Confidence            8864   4889999999999999999999999887766555566788999999999999999999999999879999999


Q ss_pred             CcccccccccccCCCC---CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          343 GMTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      |+||++..+.......   ......++|++.++++++|+| +++.+++.|+.|||+++|+.++.|  ||++++.+...|-
T Consensus       294 G~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~~  370 (503)
T PRK04813        294 GPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKG--YLNNPEKTAEAFF  370 (503)
T ss_pred             ccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccc--cCCChhHhHHhhc
Confidence            9999876554322211   123456799999999999999 689999999999999999999999  9999999988663


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                      ..+..+||+|||+++
T Consensus       371 ~~~g~~~~~tGD~~~  385 (503)
T PRK04813        371 TFDGQPAYHTGDAGY  385 (503)
T ss_pred             cCCCceeEECCceEE
Confidence            223346999999763

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.6e-48  Score=389.83  Aligned_cols=393  Identities=19%  Similarity=0.269  Sum_probs=299.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+...+.+.++.+|+++|+++.  +..+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~   97 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVV   97 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEE
Confidence            67899999999999999999986  4789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhc------------CCCcEEeccCCccccc-ccccccccccchhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------------NLPAVLLGSKDKVSSS-GLISRSSKIVSFHD  173 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  173 (435)
                      +|+++..+.+++..+++.++++++++++.+.+.+...            ....+++......... .......+...+.+
T Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (567)
T PLN02479         98 NCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEK  177 (567)
T ss_pred             EEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHH
Confidence            9999999999999999999999999998765543221            1112222211110000 00001123334555


Q ss_pred             hhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHH
Q 013850          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (435)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~  253 (435)
                      ++..... ..........++.++++|||||||.||+|.++|+++..........+.+  ..++++++.+|++|.+++...
T Consensus       178 ~~~~~~~-~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~h~~~~~~~  254 (567)
T PLN02479        178 FLETGDP-EFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGM--NEGAVYLWTLPMFHCNGWCFT  254 (567)
T ss_pred             HHhcccc-ccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCC--CCCCEEEEecchhhhhhHHHH
Confidence            5543221 1111122334567889999999999999999999987654443333333  334899999999999998644


Q ss_pred             HHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC-CCCcceeEEEecCCCCcHHHHHHHHhh
Q 013850          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-FDISSLKLVGSGAAPLGKELMEDCQKN  332 (435)
Q Consensus       254 ~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~~~~  332 (435)
                      +...+..|.++++ ..+++..+++.++++++|++.++|+++..|.+...... ..++++|.++++|+++++.+.++|.+.
T Consensus       255 ~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~  333 (567)
T PLN02479        255 WTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK  333 (567)
T ss_pred             HHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc
Confidence            4455666666554 56899999999999999999999999999987654333 257899999999999999999999876


Q ss_pred             CCCCeeecCcCcccccccccccCCC--------CC-CcCCCCcccccCCcE-EEEEeCCCCccCCCC--CceeEEEeCCC
Q 013850          333 IPGATIFQGYGMTETCAPISLENPL--------VG-VRRSGSAGTLVAGVE-AQIVSVDTLKPLPPN--QLGEIWVRGPN  400 (435)
Q Consensus       333 ~~~~~~~~~yG~tE~~~~~~~~~~~--------~~-~~~~~~~G~~~~~~~-~~i~d~~~~~~~~~g--~~Gei~v~g~~  400 (435)
                        +.++++.||+||+++.+......        .. .......|.+.+++. ++|+|++++.+++.+  +.|||+++|++
T Consensus       334 --~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~  411 (567)
T PLN02479        334 --GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNM  411 (567)
T ss_pred             --CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccc
Confidence              48999999999986544322100        00 011235688888876 889997788888764  68999999999


Q ss_pred             ccccccccCCcccccccccccccCcceecCCCC
Q 013850          401 VTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       401 ~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      ++.|  ||++++.+.+.|    .++||+|||++
T Consensus       412 ~~~G--Y~~~~~~t~~~~----~~g~~~TGDl~  438 (567)
T PLN02479        412 VMKG--YLKNPKANEEAF----ANGWFHSGDLG  438 (567)
T ss_pred             hhhh--hhcCcccccchh----cCCceecceeE
Confidence            9999  999999999988    36799999976

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-48  Score=386.69  Aligned_cols=396  Identities=27%  Similarity=0.409  Sum_probs=311.3

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .++.++|.++++++|+++|+++.  +..+||.||.++++++|..|++ .|+++||+|+++++|++++++++|||+++|++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  100 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI  100 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            57999999999999999999976  5899999999999999999984 89999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcc-cccc---------------ccccc
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKV-SSSG---------------LISRS  165 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~---------------~~~~~  165 (435)
                      ++|++|.++.+++.++++.++++.++++++..+.+....    ...++....... ....               .....
T Consensus       101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PRK08974        101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL  180 (560)
T ss_pred             EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence            999999999999999999999999999876555443321    111111110000 0000               00000


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCCCcEEEecchH
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPM  244 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~~l  244 (435)
                      .....+.+....... .........++++++|+|||||||.||+|.++|.++............ .....++.++..+|+
T Consensus       181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  259 (560)
T PRK08974        181 PDAISFRSALHKGRR-MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPL  259 (560)
T ss_pred             CCcccHHHHhhccCC-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcH
Confidence            011122222221110 112223356889999999999999999999999999876544332222 112333788899999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcH
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~  323 (435)
                      +|.+++....+.++..|+++++. +..++..+++.++++++|++.++|+++..|.+.......+++++|.+++||+++++
T Consensus       260 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~  339 (560)
T PRK08974        260 YHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQ  339 (560)
T ss_pred             HHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCH
Confidence            99999876677788889887766 45688999999999999999999999999998766666678899999999999999


Q ss_pred             HHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccc
Q 013850          324 ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP  403 (435)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~  403 (435)
                      .+.++|++.++ +++++.||+||++..+...... .....+++|.|+++++++|+| +++..++.|+.|||+++|+.++.
T Consensus       340 ~~~~~~~~~~g-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~  416 (560)
T PRK08974        340 AVAERWVKLTG-QYLLEGYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVML  416 (560)
T ss_pred             HHHHHHHHHhC-CcEEeeecccccCceeeccCCC-CcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcch
Confidence            99999999886 9999999999988776654332 134467899999999999999 47899999999999999999999


Q ss_pred             cccccCCcccccccccccccCcceecCCCCC
Q 013850          404 GIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       404 g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |  |+++++.+...|    .++||+|||+++
T Consensus       417 g--y~~~~~~~~~~~----~~g~~~TGDl~~  441 (560)
T PRK08974        417 G--YWQRPEATDEVI----KDGWLATGDIAV  441 (560)
T ss_pred             h--hcCChhhhhhhh----hcCCcccCCEEE
Confidence            9  999999988766    467999999764

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.8e-49  Score=460.98  Aligned_cols=377  Identities=20%  Similarity=0.296  Sum_probs=315.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.+  ..+||+||.++++++|+.|++.|+++|++|++++++++++++++||++++|+++
T Consensus      1131 ~~l~~~~~~~a~~~p~~~Al~~~~--~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691       1131 AWLPELLNEQARQTPERIALVWDG--GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECC--ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            689999999999999999999874  789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|++|.++.+++.++++.++++++|++......+..... ...+..+.              ......    .  ...+.
T Consensus      1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~----~--~~~~~ 1267 (4334)
T PRK05691       1209 VPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEG-VSAIALDS--------------LHLDSW----P--SQAPG 1267 (4334)
T ss_pred             EecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccC-ceEEeecc--------------cccccc----C--CCCCC
Confidence            999999999999999999999999999876554433211 11111100              000000    0  11122


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||||.++|+++.+.+.+......+..  ++++++..|++|..++. .++.+|..|+++++
T Consensus      1268 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~i 1344 (4334)
T PRK05691       1268 LHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDD--SDVLMQKAPISFDVSVW-ECFWPLITGCRLVL 1344 (4334)
T ss_pred             CCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCC--CCEEEEeCCccHHHHHH-HHHHHHhCCCEEEE
Confidence            3456899999999999999999999999999988776655555433  39999999999999885 88999999999999


Q ss_pred             cC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       267 ~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      .+   ..++..+++.++++++|++.++|+++..|.+...  ...+++||.+++|||++++++.++|.+.+++++++|.||
T Consensus      1345 ~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 1422 (4334)
T PRK05691       1345 AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYG 1422 (4334)
T ss_pred             cCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCC
Confidence            85   3689999999999999999999999999987532  346789999999999999999999999998899999999


Q ss_pred             cccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc--cc
Q 013850          344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--CE  421 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--~~  421 (435)
                      +||++..++............++|+|+++++++|+| +++++++.|++|||+|+|++++.|  |+++|+.|.+.|.  .+
T Consensus      1423 ~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~G--Yl~~p~~t~~~f~~~p~ 1499 (4334)
T PRK05691       1423 PTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARG--YLGRPALTAERFVPDPL 1499 (4334)
T ss_pred             cChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchh--hcCCccccHhhCCCCCC
Confidence            999887665432222234567899999999999999 589999999999999999999999  9999999999882  11


Q ss_pred             --ccCcceecCCCCC
Q 013850          422 --HTDSFIRGKDQQT  434 (435)
Q Consensus       422 --~~~~~~~tgD~~~  434 (435)
                        ..++||+|||+++
T Consensus      1500 ~~~~~r~yrTGDl~~ 1514 (4334)
T PRK05691       1500 GEDGARLYRTGDRAR 1514 (4334)
T ss_pred             CCCCceEEEccceEE
Confidence              1236999999874

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-48  Score=385.25  Aligned_cols=377  Identities=22%  Similarity=0.264  Sum_probs=289.8

Q ss_pred             hhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCC
Q 013850           35 RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT  114 (435)
Q Consensus        35 ~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~  114 (435)
                      .+++.+|+++|+++.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            46678999999987655689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEccccHHHHhhcCCCc-EEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCC
Q 013850          115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTD  193 (435)
Q Consensus       115 ~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (435)
                      .+++..+++.++++.+++++............. ..+....         .......+++......      +......+
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~  149 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGG---------EIDGFGSFEAALAGAG------PRLTEQPC  149 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecC---------cccccccHHHHhcccC------CCCCCCcc
Confidence            999999999999999999876543322221110 0111000         0011112222221110      01112235


Q ss_pred             EEEEEeCCCCCCCccceee--ccHHHHHHHHHHH--hhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCC
Q 013850          194 AAALLYSSGTTGVSKGVIL--THKNFIAASLMIS--AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK  269 (435)
Q Consensus       194 ~~~i~~TSGtTG~pK~v~~--t~~~l~~~~~~~~--~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~  269 (435)
                      .++|+|||||||.||+|.+  +|.++........  ....+.....+++++.+|++|..++. .....+..|+++++.+.
T Consensus       150 ~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~-~~~~~~~~g~~~~~~~~  228 (501)
T PRK13390        150 GAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLR-WCSMVHALGGTVVLAKR  228 (501)
T ss_pred             cEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHH-HHHHHHhcCceEEEcCC
Confidence            7999999999999999995  4555443211110  11112223349999999999999875 33445678999999988


Q ss_pred             CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccc
Q 013850          270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET  347 (435)
Q Consensus       270 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~  347 (435)
                      +++..+++.|+++++|++.++|+++..|.+....  ...+++++|.++.||+++++++.+.+++.++ .++++.||+||+
T Consensus       229 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~YG~tE~  307 (501)
T PRK13390        229 FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYEYYSSTEA  307 (501)
T ss_pred             cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcC-Cceeeeeccccc
Confidence            9999999999999999999999999999875432  3456789999999999999999999999886 899999999999


Q ss_pred             cccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcce
Q 013850          348 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFI  427 (435)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  427 (435)
                      +++....... .....+++|+|+++ .++|+| ++++++++|+.|||+++|++++.|  ||++++.+.+.+. ...++|+
T Consensus       308 ~~~~~~~~~~-~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~t~~~~~-~~~~~w~  381 (501)
T PRK13390        308 HGMTFIDSPD-WLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFR--YLNDPEKTAAAQH-PAHPFWT  381 (501)
T ss_pred             CceEEecchh-hccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCcccc--ccCChhhhHHhhc-cCCCceE
Confidence            8755433222 13456789999999 799999 689999999999999999999999  9999999988662 1125799


Q ss_pred             ecCCCCC
Q 013850          428 RGKDQQT  434 (435)
Q Consensus       428 ~tgD~~~  434 (435)
                      +|||+++
T Consensus       382 ~tGDl~~  388 (501)
T PRK13390        382 TVGDLGS  388 (501)
T ss_pred             EcCceEE
Confidence            9998763

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-48  Score=379.28  Aligned_cols=348  Identities=25%  Similarity=0.300  Sum_probs=287.5

Q ss_pred             cccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHH
Q 013850           37 SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVS  116 (435)
Q Consensus        37 ~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~  116 (435)
                      +++.++++|+++.  ++.+||.||.++++++|..|+     ++|+|+++++|++++++++|||+++|++++|+++..+.+
T Consensus        10 ~~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~   82 (471)
T PRK07787         10 AAAADIADAVRIG--GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVA   82 (471)
T ss_pred             hcccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChH
Confidence            4677889999886  489999999999999999985     479999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEE
Q 013850          117 ELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  196 (435)
Q Consensus       117 ~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (435)
                      ++..+++.+++++++++++...  ...  .......              ...            .........++++++
T Consensus        83 ~l~~~l~~~~~~~il~~~~~~~--~~~--~~~~~~~--------------~~~------------~~~~~~~~~~~~~a~  132 (471)
T PRK07787         83 ERRHILADSGAQAWLGPAPDDP--AGL--PHVPVRL--------------HAR------------SWHRYPEPDPDAPAL  132 (471)
T ss_pred             HHHHHHHhcCCCEEEecCCccc--ccc--cceeeec--------------ccc------------ccccCCCCCCCceEE
Confidence            9999999999999999863110  000  0000000              000            001112346789999


Q ss_pred             EEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHH
Q 013850          197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL  276 (435)
Q Consensus       197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~  276 (435)
                      |+|||||||.||+|.++|+++...+..........  .++++++.+|++|.+|++..++.++..|+++++.+.+++..++
T Consensus       133 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  210 (471)
T PRK07787        133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWT--ADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYA  210 (471)
T ss_pred             EEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCC--ccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHH
Confidence            99999999999999999999998876655544443  3489999999999999988899999999999999889999999


Q ss_pred             HHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCC
Q 013850          277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENP  356 (435)
Q Consensus       277 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~  356 (435)
                      +.++ +++|.+.++|+++..|.+.... ...++++|.++.||+++++++.++|.+.++ .++++.||+||++........
T Consensus       211 ~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~  287 (471)
T PRK07787        211 QALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTG-HRPVERYGMTETLITLSTRAD  287 (471)
T ss_pred             HHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcC-CCeecccCccccCcceecCCC
Confidence            9999 9999999999999999875432 346789999999999999999999999886 899999999998865444322


Q ss_pred             CCCCcCCCCcccccCCcEEEEEeCCCCccCC-CCC-ceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          357 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQ-LGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       357 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~-~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .  ...++++|+|+++++++|+|+ ++.+++ .++ +|||+++|++++.|  ||++++.+.+.|   ..++||+|||+++
T Consensus       288 ~--~~~~~~vG~~~~g~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~g--y~~~~~~t~~~~---~~~~~~~TGDlg~  359 (471)
T PRK07787        288 G--ERRPGWVGLPLAGVETRLVDE-DGGPVPHDGETVGELQVRGPTLFDG--YLNRPDATAAAF---TADGWFRTGDVAV  359 (471)
T ss_pred             C--cccCCcccccCCCcEEEEECC-CCCCCCCCCCCceEEEEECcccchh--hcCChhhchhcc---cCCCceecCceEE
Confidence            2  445678999999999999995 677776 344 89999999999999  999999998877   2467999999753

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-48  Score=389.96  Aligned_cols=382  Identities=21%  Similarity=0.292  Sum_probs=289.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecC-------CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~   99 (435)
                      +++.++|.+++..+|+++|+++.+       ..+.+||.||.++++++|++|+++| .+||+|+++++|++++++++|||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            368899999999999999998642       1268999999999999999999999 68999999999999999999999


Q ss_pred             HHcCcEEEecCC---CCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC------cEEeccCCcccccccccccccccc
Q 013850          100 IAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP------AVLLGSKDKVSSSGLISRSSKIVS  170 (435)
Q Consensus       100 ~~~G~~~v~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  170 (435)
                      +++|++++|+++   ..+.+++.++++.+++++++++++..+.+......      ..++..+                 
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  142 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD-----------------  142 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec-----------------
Confidence            999999999997   44788999999999999999998876665432110      0000000                 


Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhh-hhc---cCCCcEEEecchHHH
Q 013850          171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELV---GELDHVVLCVLPMFH  246 (435)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~---~~~~d~~l~~~~l~~  246 (435)
                      ..+...  .  .........++++++|+|||||||.||+|.++|++++..+....... ...   ...++++++.+|++|
T Consensus       143 ~~~~~~--~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h  218 (578)
T PRK05850        143 LLDLDS--P--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH  218 (578)
T ss_pred             cccccc--C--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence            000000  0  11112334678999999999999999999999999988765543322 111   122489999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCCC----CHHHHHHHHHhcCceEEEecHHHHH-HHHhcc---cccCCCCcceeEEEecC
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIIL-ALAKNS---LVRKFDISSLKLVGSGA  318 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~-~l~~~~---~~~~~~l~~lr~i~~gG  318 (435)
                      .+|+...++.++..|+++++.++.    ++..+++.+++++++++ .+|.++. .+....   .....+++++|.+++||
T Consensus       219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg  297 (578)
T PRK05850        219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGS  297 (578)
T ss_pred             CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECc
Confidence            999977799999999999998643    78999999999999865 5665543 333221   11234678999999999


Q ss_pred             CCCcHHHHHHHHhhCC-----CCeeecCcCcccccccccccCCCCCC-----------------------cCCCCccccc
Q 013850          319 APLGKELMEDCQKNIP-----GATIFQGYGMTETCAPISLENPLVGV-----------------------RRSGSAGTLV  370 (435)
Q Consensus       319 ~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~-----------------------~~~~~~G~~~  370 (435)
                      +++++++.++|.+.|+     +..+++.||+||++..+.........                       .....+|.|.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~  377 (578)
T PRK05850        298 ERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR  377 (578)
T ss_pred             CCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC
Confidence            9999999999998873     24799999999987654432211000                       0011334443


Q ss_pred             CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc--c------ccCcceecCCCCC
Q 013850          371 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC--E------HTDSFIRGKDQQT  434 (435)
Q Consensus       371 ~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~--~------~~~~~~~tgD~~~  434 (435)
                       +.+++|+|++++.+++.|+.|||+++|++++.|  ||++++.|.+.|.-  .      ..++||+|||++.
T Consensus       378 -~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~g--Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~  446 (578)
T PRK05850        378 -SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAG--YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF  446 (578)
T ss_pred             -CCEEEEEcCCCCcCCCCCCEEEEEEecCccccc--ccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence             578999998788999999999999999999999  99999999987720  0      1257999999874

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.7e-47  Score=374.56  Aligned_cols=375  Identities=23%  Similarity=0.275  Sum_probs=294.5

Q ss_pred             HhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCC
Q 013850           34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY  113 (435)
Q Consensus        34 ~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~  113 (435)
                      ..+++++|+++|+++.+.++.+||.||.++++++|+.|+++|+++|++|+++++|+++++++++||+++|++++|+++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            46778899999999865578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCeEEEEccccHHHHhhcCC-----CcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCC
Q 013850          114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS  188 (435)
Q Consensus       114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (435)
                      +.+++.++++.++++.++++......+.....     ...+.....        ........+.+......     ....
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~  150 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGD--------GELEGFVGYAEAVAGLP-----ATPI  150 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCC--------CCCcccccHHHHhcCCC-----CCCC
Confidence            99999999999999999999877655433321     111111110        00111222332221111     1111


Q ss_pred             CCCCCEEEEEeCCCCCCCccceee--ccHHHHHHHH---HHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          189 VKQTDAAALLYSSGTTGVSKGVIL--THKNFIAASL---MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                      .+..+.++++|||||||.||+|.+  +|.++.....   .......+  ..++++++..|++|..++. ..+.++..|++
T Consensus       151 ~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~  227 (511)
T PRK13391        151 ADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGF--RSDMVYLSPAPLYHSAPQR-AVMLVIRLGGT  227 (511)
T ss_pred             CCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCC--CCCCeEEEcCCHHHHHHHH-HHHHHHHcCce
Confidence            234567899999999999999995  4655543221   11122222  2348999999999999885 66788999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       264 i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                      +++.+.+++..+++.++++++|++.++|+++..+.+....  ...+++++|.+++||+++++++.+++++.++ ..+++.
T Consensus       228 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~  306 (511)
T PRK13391        228 VIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEY  306 (511)
T ss_pred             EEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcC-Cceeee
Confidence            9999889999999999999999999999999988865322  2345789999999999999999999999886 899999


Q ss_pred             cCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      ||+||++.+....... .....+++|+|+++ .++|+| +++++++.|+.|||+++|+ ++.|  ||++++.+.+.+.  
T Consensus       307 YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~g--y~~~~~~~~~~~~--  378 (511)
T PRK13391        307 YAATEGLGFTACDSEE-WLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFE--YLNDPAKTAEARH--  378 (511)
T ss_pred             eccccccceEEecCcc-ccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceE--EcCChhHhHHhhc--
Confidence            9999998765543222 13456799999999 689999 6899999999999999999 8889  9999999887651  


Q ss_pred             ccCcceecCCCC
Q 013850          422 HTDSFIRGKDQQ  433 (435)
Q Consensus       422 ~~~~~~~tgD~~  433 (435)
                      ..++|++|||++
T Consensus       379 ~~~~w~~TGD~g  390 (511)
T PRK13391        379 PDGTWSTVGDIG  390 (511)
T ss_pred             cCCCEEecCCEE
Confidence            125899999975

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.9e-47  Score=375.65  Aligned_cols=389  Identities=20%  Similarity=0.242  Sum_probs=302.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +|+.++|.++++++|+++|+++.  ++.+||.||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~   80 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP   80 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence            68999999999999999999986  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC-----cEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP-----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|+++.++.+++.++++.+++++++++......+......     .++...+....     ....+..++++++....  
T Consensus        81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--  153 (533)
T PRK07798         81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGN-----DLLPGAVDYEDALAAGS--  153 (533)
T ss_pred             EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccc-----ccCCccccHHHHHhccC--
Confidence            9999999999999999999999999998776666554211     12222111100     11112345666654433  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhh------hhc-------cCCCcEEEecchHHHHH
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ------ELV-------GELDHVVLCVLPMFHVF  248 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~------~~~-------~~~~d~~l~~~~l~~~~  248 (435)
                      ........ ..+.++|+|||||||.||+|+++|+++...........      ...       ...+++++..+|++|..
T Consensus       154 ~~~~~~~~-~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  232 (533)
T PRK07798        154 PERDFGER-SPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA  232 (533)
T ss_pred             CcCCCCCC-CCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhh
Confidence            11111122 23456899999999999999999999876543322111      000       02338899999999999


Q ss_pred             HHHHHHHhhhhcCcEEEecC--CCCHHHHHHHHHhcCceEEEecHHHHH-HHHhccc-ccCCCCcceeEEEecCCCCcHH
Q 013850          249 GLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIIL-ALAKNSL-VRKFDISSLKLVGSGAAPLGKE  324 (435)
Q Consensus       249 g~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~-~l~~~~~-~~~~~l~~lr~i~~gG~~l~~~  324 (435)
                      +++ .++.++..|+++++.+  .+++..+++.++++++|.+.++|..+. .+.+... .....++++|.+++||++++++
T Consensus       233 ~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~  311 (533)
T PRK07798        233 GQW-AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPS  311 (533)
T ss_pred             hHH-HHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHH
Confidence            996 8889999999999998  789999999999999999999987553 3333322 3345678999999999999999


Q ss_pred             HHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcc--cccCCcEEEEEeCCCCccCCCCCc--eeEEEeCCC
Q 013850          325 LMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAG--TLVAGVEAQIVSVDTLKPLPPNQL--GEIWVRGPN  400 (435)
Q Consensus       325 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~i~d~~~~~~~~~g~~--Gei~v~g~~  400 (435)
                      +.++|++.+++..+++.||+||++.........    .....|  .+.++..++|+| +++++++.|+.  |+++ +++.
T Consensus       312 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~  385 (533)
T PRK07798        312 VKEALLELLPNVVLTDSIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGH  385 (533)
T ss_pred             HHHHHHHHcCCCeEEeeecccccccccccCCCC----CCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecC
Confidence            999999999779999999999986544433211    112333  788999999999 57779999887  6665 5678


Q ss_pred             ccccccccCCcccccccccccccCcceecCCCCC
Q 013850          401 VTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       401 ~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++.|  ||++++.+.+.|...+.++|++|||+++
T Consensus       386 ~~~g--y~~~~~~t~~~f~~~~~~~~~~TGD~~~  417 (533)
T PRK07798        386 IPLG--YYKDPEKTAETFPTIDGVRYAIPGDRAR  417 (533)
T ss_pred             cccc--ccCChhhhHHhhccCCCCceEEcCcEEE
Confidence            9999  9999999988874344457999999763

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=3.8e-47  Score=365.60  Aligned_cols=352  Identities=23%  Similarity=0.328  Sum_probs=288.2

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc
Q 013850           56 SFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP  134 (435)
Q Consensus        56 Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~  134 (435)
                      ||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++.+++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeecc
Q 013850          135 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH  214 (435)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~  214 (435)
                      .....+.............                 +......... .........++++++++|||||||.||+|.++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~  142 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPL-----------------ELAALDDAPA-PPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTH  142 (408)
T ss_pred             chhhhccccCCceEEechh-----------------hhhhcccccc-cccccCCCCCCCcEEEEEcCCCCCCCCEEEecc
Confidence            8776655443222222111                 0000000000 111111245789999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCC---HHHHHHHHHhcCceEEEecH
Q 013850          215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD---IEMALRAIEKYRVTVWWVVP  291 (435)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~---~~~~~~~l~~~~~t~~~~~P  291 (435)
                      +++............+.  ..+++++..|++|.+++. .++.++..|+++++.+...   +..+.+.++++++|.+.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p  219 (408)
T TIGR01733       143 RSLVNLLAWLARRYGLD--PDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP  219 (408)
T ss_pred             HHHHHHHHHHHHhcCCC--CCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence            99998877766644443  349999999999999985 8899999999999987543   68899999999999999999


Q ss_pred             HHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCC-CCc--CCCCccc
Q 013850          292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLV-GVR--RSGSAGT  368 (435)
Q Consensus       292 ~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~--~~~~~G~  368 (435)
                      .+++.|.+...   ..+++||.+++||+++++++.+.+++.++++.+++.||+||++.++....... ...  +..++|.
T Consensus       220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~  296 (408)
T TIGR01733       220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGR  296 (408)
T ss_pred             HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCc
Confidence            99999998754   56889999999999999999999999998799999999999987775322111 111  2778999


Q ss_pred             ccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc--c-ccccCc--ceecCCCCC
Q 013850          369 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW--G-CEHTDS--FIRGKDQQT  434 (435)
Q Consensus       369 ~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~--~-~~~~~~--~~~tgD~~~  434 (435)
                      |+++++++|+|+ ++++++.|+.|||+++|++++.|  |+++++.+.+.|  . +...++  ||+|||++.
T Consensus       297 ~~~~~~~~i~~~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~  364 (408)
T TIGR01733       297 PLANTRLYVLDD-DLRPVPVGVVGELYIGGPGVARG--YLNRPELTAERFVPDPFAGGDGARLYRTGDLVR  364 (408)
T ss_pred             ccCCceEEEECC-CCCCCCCCCceEEEecCcccccc--ccCChhhhhcceeeCCCCCCCCceEEECCceEE
Confidence            999999999996 59999999999999999999999  999999998877  2 122233  999999864

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-46  Score=373.65  Aligned_cols=389  Identities=21%  Similarity=0.289  Sum_probs=298.2

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +++.+.|.+.++.+|+++|+...  +..+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   95 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL   95 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEE
Confidence            67899999999999999999886  4789999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CC-cEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|+++.++.+++..+++.++++.++++++..+.+....    .. .+++......  .. ........++.++.....  
T Consensus        96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~--  170 (545)
T PRK08162         96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPE--YP-GGRFIGALDYEAFLASGD--  170 (545)
T ss_pred             eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccc--cc-cCCCcccccHHHHhccCC--
Confidence            99999999999999999999999999998776654421    11 2222211100  00 001112334555543322  


Q ss_pred             CCCC-CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850          182 TDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (435)
Q Consensus       182 ~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~  260 (435)
                      .... ....+..++++|+|||||||.||+|.++|+++............+  ..++++++.+|++|..++...++..+ .
T Consensus       171 ~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~~~~~~~~~~~-~  247 (545)
T PRK08162        171 PDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGM--PKHPVYLWTLPMFHCNGWCFPWTVAA-R  247 (545)
T ss_pred             ccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCC--CCCCeeEeccCcHhhhhHHHHHHHHH-H
Confidence            1111 122345688999999999999999999999887665444333333  23389999999999999864444445 4


Q ss_pred             CcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeec
Q 013850          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (435)
Q Consensus       261 G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~  340 (435)
                      |++.++...+++..+++.++++++|++.++|+++..|++........+.+++.++++|+++++++.+.+++.  ++++++
T Consensus       248 ~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~  325 (545)
T PRK08162        248 AGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTH  325 (545)
T ss_pred             ccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceee
Confidence            555555567899999999999999999999999999998765444455667777899999999999998775  599999


Q ss_pred             CcCcccccccccccCCCCC---------CcCCCCcccccC-CcEEEEEeCCCCccCCC-C-CceeEEEeCCCcccccccc
Q 013850          341 GYGMTETCAPISLENPLVG---------VRRSGSAGTLVA-GVEAQIVSVDTLKPLPP-N-QLGEIWVRGPNVTPGIVYI  408 (435)
Q Consensus       341 ~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~-~~~~~i~d~~~~~~~~~-g-~~Gei~v~g~~~~~g~~y~  408 (435)
                      .||+||+++.+........         .....+.|.+.+ +..++|+|++++++++. | +.|||+++|+.++.|  ||
T Consensus       326 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~g--Y~  403 (545)
T PRK08162        326 VYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKG--YL  403 (545)
T ss_pred             cccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhh--hc
Confidence            9999998755544321110         112345666654 34678889778888876 3 469999999999999  99


Q ss_pred             CCcccccccccccccCcceecCCCC
Q 013850          409 NFFVFTLFLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~tgD~~  433 (435)
                      ++++.+...|    .++||+|||++
T Consensus       404 ~~~~~~~~~~----~~g~~~TGDl~  424 (545)
T PRK08162        404 KNPKATEEAF----AGGWFHTGDLA  424 (545)
T ss_pred             CChhhhHHHh----hCCCcccCceE
Confidence            9999999887    46799999976

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-47  Score=381.52  Aligned_cols=387  Identities=21%  Similarity=0.257  Sum_probs=297.1

Q ss_pred             CCCCCCCCCchHHHHHhhcccCCCceeeeecCC-CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHH
Q 013850           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDADS-DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (435)
Q Consensus        19 ~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~l   97 (435)
                      .++|..  .|+.++|...++.+|+..++..... .+.+||.||.+++.++|++|++.|+++||+|+++++|+++++++++
T Consensus        15 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~l   92 (579)
T PRK09192         15 RRYADF--PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFF   92 (579)
T ss_pred             ccccch--hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHH
Confidence            456666  7999999999998887665532211 2679999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcEEEecCCCCC-------HHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccc
Q 013850           98 GVIAIGAIASTANPVYT-------VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS  170 (435)
Q Consensus        98 A~~~~G~~~v~i~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (435)
                      ||+++|++++|+++..+       .+++..+++.++++++|+++...+.+.........                ....+
T Consensus        93 A~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~----------------~~~~~  156 (579)
T PRK09192         93 ACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL----------------LHVLS  156 (579)
T ss_pred             HHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc----------------cceee
Confidence            99999999999987543       58899999999999999998776655543211000                00112


Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHh-hhhhccCCCcEEEecchHHHHHH
Q 013850          171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFHVFG  249 (435)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~l~~~~l~~~~g  249 (435)
                      +.++.....  .........++++++|+|||||||.||+|.++|+++......... ...+  ..+|+++..+|++|.++
T Consensus       157 ~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g  232 (579)
T PRK09192        157 HAWFKALPE--ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV--RPGDRCVSWLPFYHDMG  232 (579)
T ss_pred             hhhhcccCC--CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccC--CCCCeEEEeCCCCCcch
Confidence            222222111  112223456789999999999999999999999999987665543 3333  33499999999999999


Q ss_pred             HHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcc---cccCCCCcceeEEEecCCCCc
Q 013850          250 LSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNS---LVRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       250 ~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~---~~~~~~l~~lr~i~~gG~~l~  322 (435)
                      +...++.++..|+++++.+.    .++..+++.+.++++++++..|..+..+....   .....+++++|.+++||++++
T Consensus       233 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~  312 (579)
T PRK09192        233 LVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIR  312 (579)
T ss_pred             hHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCC
Confidence            98678888999999977652    26889999999999998777655555544322   123356889999999999999


Q ss_pred             HHHHHHHHhhCCC-----CeeecCcCcccccccccccCCCCC--------------------------CcCCCCcccccC
Q 013850          323 KELMEDCQKNIPG-----ATIFQGYGMTETCAPISLENPLVG--------------------------VRRSGSAGTLVA  371 (435)
Q Consensus       323 ~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~~~~  371 (435)
                      +++.+++.+.++.     ..+++.||+||++..++.......                          .....++|+++|
T Consensus       313 ~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p  392 (579)
T PRK09192        313 PDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALP  392 (579)
T ss_pred             HHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCC
Confidence            9999999988741     358999999998866554322110                          011357899999


Q ss_pred             CcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       372 ~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++++|+| +++..++.|+.|||+++|+.++.|  ||++ +.+.+.+   ..++||+|||++.
T Consensus       393 ~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~g--Y~~~-~~~~~~~---~~dgw~~TGDlg~  448 (579)
T PRK09192        393 GHEIEIRN-EAGMPLPERVVGHICVRGPSLMSG--YFRD-EESQDVL---AADGWLDTGDLGY  448 (579)
T ss_pred             CcEEEEEC-CCCCCCCCCCEEEEEecCCchhhh--hcCC-ccccccc---cCCceeeccceee
Confidence            99999999 578899999999999999999999  9999 5555544   3578999999863

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.2e-46  Score=404.99  Aligned_cols=381  Identities=22%  Similarity=0.339  Sum_probs=296.4

Q ss_pred             CchHHHHHhhcccCC-CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p-~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .++.+.|.++++++| ++.|+.+. +++.+||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++
T Consensus       631 ~~~~~~l~~~~~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v  708 (1140)
T PRK06814        631 RTLFEALIEAAKIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV  708 (1140)
T ss_pred             CCHHHHHHHHHHHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence            678888888888887 45666653 25789999999999999999976 9999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh------hcCCCcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK------DLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (435)
                      ++|+++..+.+++.++++++++++++++++..+...      .......++..+...      ........+.+......
T Consensus       709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~  782 (1140)
T PRK06814        709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR------AQIGLADKIKGLLAGRF  782 (1140)
T ss_pred             EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh------ccCChHHHHHHHhhccC
Confidence            999999999999999999999999999976544321      111111111111000      00000001111111111


Q ss_pred             CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~  259 (435)
                        +........++|+++|+|||||||.||+|.++|+++.+..........+.  .+|++++.+|++|.+++...++.++.
T Consensus       783 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~~~~~~l~  858 (1140)
T PRK06814        783 --PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFS--PEDKVFNALPVFHSFGLTGGLVLPLL  858 (1140)
T ss_pred             --CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCC--CcCEEEEecchHHHHHHHHHHHHHHH
Confidence              11111245789999999999999999999999999988776655544443  34999999999999999768889999


Q ss_pred             cCcEEEecCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCee
Q 013850          260 KGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (435)
Q Consensus       260 ~G~~i~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~  338 (435)
                      .|+++++.+. .+...+.+.++++++|++.++|+++..+.+..  ...+++++|.+++||+++++++.+.+.+.++ .++
T Consensus       859 ~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~  935 (1140)
T PRK06814        859 SGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFG-IRI  935 (1140)
T ss_pred             cCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhC-CcE
Confidence            9999998763 56788899999999999999999999988753  3456889999999999999999999999996 999


Q ss_pred             ecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc
Q 013850          339 FQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW  418 (435)
Q Consensus       339 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~  418 (435)
                      ++.||+||++..+....+.  ..+.+++|+|++++++++.+. .+    .++.|||+++|++++.|  ||++++..... 
T Consensus       936 ~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~-~~----~~~~Gel~v~g~~~~~g--Y~~~~~~~~~~- 1005 (1140)
T PRK06814        936 LEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPV-PG----IDEGGRLFVRGPNVMLG--YLRAENPGVLE- 1005 (1140)
T ss_pred             EeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeec-CC----CCCceEEEEeCCCcchh--hcCCCCCCccc-
Confidence            9999999998776654433  346789999999999999874 32    36789999999999999  99876543211 


Q ss_pred             cccccCcceecCCCCC
Q 013850          419 GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       419 ~~~~~~~~~~tgD~~~  434 (435)
                        ...+|||+|||+++
T Consensus      1006 --~~~~g~~~TGDl~~ 1019 (1140)
T PRK06814       1006 --PPADGWYDTGDIVT 1019 (1140)
T ss_pred             --cCCCCeEecCCEEE
Confidence              12467999999764

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-46  Score=373.86  Aligned_cols=377  Identities=23%  Similarity=0.304  Sum_probs=296.2

Q ss_pred             chHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEE
Q 013850           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v  107 (435)
                      ++.+.|.+.++.+|+.+++.+.+.++.+||.||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            57888899999999999998887678899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHH-------HHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCC
Q 013850          108 TANPVYTVSEL-------SKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (435)
Q Consensus       108 ~i~~~~~~~~~-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (435)
                      |+++..+.+++       ..+++.++++.+++++.....+......                  ......++++..... 
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~-  143 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK------------------GIRVLTVADLLAADP-  143 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc------------------CCceeehhhhcccCC-
Confidence            99988775443       4567788999999987665444322110                  111233444433211 


Q ss_pred             CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (435)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~  260 (435)
                         .......++++++|+|||||||.||+|.++|+++............+. ...|++++.+|++|.+++...++.++..
T Consensus       144 ---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~  219 (545)
T PRK07768        144 ---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFD-VETDVMVSWLPLFHDMGMVGFLTVPMYF  219 (545)
T ss_pred             ---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCC-CCCceeEEeCCCccchHHHHHHHHHHHC
Confidence               122345679999999999999999999999999988766555444332 2228999999999999997667788999


Q ss_pred             CcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcc----cccCCCCcceeEEEecCCCCcHHHHHHHHhh
Q 013850          261 GNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNS----LVRKFDISSLKLVGSGAAPLGKELMEDCQKN  332 (435)
Q Consensus       261 G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~  332 (435)
                      |+++++...    .++..+++.+++++++++.++|.++..|.+..    .....+++++|.++.+|+++++++.+.+.+.
T Consensus       220 g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~  299 (545)
T PRK07768        220 GAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDA  299 (545)
T ss_pred             CceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHH
Confidence            999988754    26788999999999999988887776665432    1123578899999999999999999998874


Q ss_pred             ---CC--CCeeecCcCcccccccccccCCCCC------------------------CcCCCCcccccCCcEEEEEeCCCC
Q 013850          333 ---IP--GATIFQGYGMTETCAPISLENPLVG------------------------VRRSGSAGTLVAGVEAQIVSVDTL  383 (435)
Q Consensus       333 ---~~--~~~~~~~yG~tE~~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~i~d~~~~  383 (435)
                         ++  ...+++.||+||++..+........                        ..+.+++|+|+++++++|+| +++
T Consensus       300 ~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~  378 (545)
T PRK07768        300 GARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDG  378 (545)
T ss_pred             HHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCC
Confidence               43  2359999999999876543322100                        12346899999999999999 688


Q ss_pred             ccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          384 KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       384 ~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++++|+.|||+++|+.++.|  ||+++......    ..++||+|||+++
T Consensus       379 ~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~----~~~g~~~TGDl~~  423 (545)
T PRK07768        379 QVLPPRGVGVIELRGESVTPG--YLTMDGFIPAQ----DADGWLDTGDLGY  423 (545)
T ss_pred             CCCCCCCEEEEEEccCccccc--ccCCCCCcccc----cCCCeeeccceEE
Confidence            999999999999999999999  99865544332    2467999999763

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4e-46  Score=368.44  Aligned_cols=372  Identities=22%  Similarity=0.290  Sum_probs=288.6

Q ss_pred             eeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Q 013850           44 LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK  123 (435)
Q Consensus        44 ~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~  123 (435)
                      .|++..  ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++
T Consensus         3 ~~~~~~--~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~   80 (509)
T PRK12406          3 ATIISG--DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILE   80 (509)
T ss_pred             eEEEEC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHh
Confidence            355655  489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEccccHHHHhhcCCC-cEEeccCCc--cccc-----ccccccccccchhhhhhhcCCCCCCCCCCCCCCCEE
Q 013850          124 DSNPKLVITVPELWDKVKDLNLP-AVLLGSKDK--VSSS-----GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA  195 (435)
Q Consensus       124 ~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (435)
                      .+++++++++......+...... ..++.....  ....     ...........+++......     ......+++++
T Consensus        81 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a  155 (509)
T PRK12406         81 DSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQPQ  155 (509)
T ss_pred             ccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCce
Confidence            99999999998776655433211 111111000  0000     00011122334444432211     12234578999


Q ss_pred             EEEeCCCCCCCccceeeccHHHHHHHH---HHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCH
Q 013850          196 ALLYSSGTTGVSKGVILTHKNFIAASL---MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDI  272 (435)
Q Consensus       196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~  272 (435)
                      +++|||||||.||+|.++|........   .......+  ..++++++..|++|..+.. ..+.++..|+++++.+.+++
T Consensus       156 ~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~  232 (509)
T PRK12406        156 SMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGL--KPGIRALLTGPLYHSAPNA-YGLRAGRLGGVLVLQPRFDP  232 (509)
T ss_pred             EEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCC--CCCceEEEEeCCcccchHH-HHHHHHhhheEEEEccCCCH
Confidence            999999999999999987765433222   11122222  3338999999999998875 44556888999999888899


Q ss_pred             HHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccccccc
Q 013850          273 EMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP  350 (435)
Q Consensus       273 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  350 (435)
                      ..+++.++++++|++.++|+++..|++...  ....+++++|.++.||+++++++.+++.+.++ +.+++.||+||++.+
T Consensus       233 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~  311 (509)
T PRK12406        233 EELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYYGSTESGAV  311 (509)
T ss_pred             HHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeeccccccCce
Confidence            999999999999999999999999987543  23456789999999999999999999999886 899999999999876


Q ss_pred             ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccc-cccccCCcccccccccccccCcceec
Q 013850          351 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP-GIVYINFFVFTLFLWGCEHTDSFIRG  429 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~-g~~y~~~~~~~~~~~~~~~~~~~~~t  429 (435)
                      ..... .+...+++++|.|+++++++|+| +++++++.|+.|||+++|+.++. |  |+++++.+...+    .++||+|
T Consensus       312 ~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~--y~~~~~~~~~~~----~~~~~~T  383 (509)
T PRK12406        312 TFATS-EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEID----RGGFITS  383 (509)
T ss_pred             EecCc-ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCcccccc--ccCCchhccccc----CCCCeEE
Confidence            55432 22234668899999999999999 57899999999999999998875 8  999999887655    4679999


Q ss_pred             CCCCC
Q 013850          430 KDQQT  434 (435)
Q Consensus       430 gD~~~  434 (435)
                      ||++.
T Consensus       384 GD~~~  388 (509)
T PRK12406        384 GDVGY  388 (509)
T ss_pred             ccEEE
Confidence            99753

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-46  Score=367.45  Aligned_cols=365  Identities=26%  Similarity=0.324  Sum_probs=290.2

Q ss_pred             eeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHh
Q 013850           45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD  124 (435)
Q Consensus        45 a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~  124 (435)
                      |++....++.+||.||.+.++++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.
T Consensus         2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~   81 (502)
T PRK08276          2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD   81 (502)
T ss_pred             ceEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence            44444447899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEccccHHHHhhcC------CCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEE
Q 013850          125 SNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  198 (435)
Q Consensus       125 ~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  198 (435)
                      ++++++++++...+.+....      .+.+.+...          .......+++......     .......++.++++
T Consensus        82 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~  146 (502)
T PRK08276         82 SGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG----------PVPGFRSYEEALAAQP-----DTPIADETAGADML  146 (502)
T ss_pred             CCCCEEEEccchhhHHHHHhhhccccccEEEEeCC----------CCCccccHHHHHhcCC-----CCCCCCCCcceEEE
Confidence            99999999987766654331      122222211          1112223444332211     11223556789999


Q ss_pred             eCCCCCCCccceeeccHHHHHHHH--HHHh--hhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHH
Q 013850          199 YSSGTTGVSKGVILTHKNFIAASL--MISA--HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM  274 (435)
Q Consensus       199 ~TSGtTG~pK~v~~t~~~l~~~~~--~~~~--~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~  274 (435)
                      |||||||.||+|.++|.++.....  ....  ........++++++..|++|.+++. ..+.++..|+++++.+.+++..
T Consensus       147 ~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~  225 (502)
T PRK08276        147 YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEKFDAEE  225 (502)
T ss_pred             ECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCCCCHHH
Confidence            999999999999999877654321  1111  1111112348999999999999985 5567899999999998899999


Q ss_pred             HHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccccccccc
Q 013850          275 ALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS  352 (435)
Q Consensus       275 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  352 (435)
                      +++.++++++|++.++|+++..+++....  ...+++++|.+++||++++.++.+++.+.++ ..+++.||+||++.+..
T Consensus       226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~  304 (502)
T PRK08276        226 ALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTV  304 (502)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeE
Confidence            99999999999999999999999886532  3456889999999999999999999999986 88999999999987555


Q ss_pred             ccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCC
Q 013850          353 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQ  432 (435)
Q Consensus       353 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~  432 (435)
                      ..... .....+++|+|+ ++.++|+| +++.+++.|+.|||+++|+.++.|  ||++++.+...+   ..++||+|||+
T Consensus       305 ~~~~~-~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~---~~~~~~~TGD~  376 (502)
T PRK08276        305 ITSED-WLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFE--YHNDPEKTAAAR---NPHGWVTVGDV  376 (502)
T ss_pred             ecCcc-ccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccch--hcCCHHHHHHHh---cCCCceeecce
Confidence            43322 234567899999 88999999 578999999999999999999999  999999988866   24589999998


Q ss_pred             CC
Q 013850          433 QT  434 (435)
Q Consensus       433 ~~  434 (435)
                      ++
T Consensus       377 ~~  378 (502)
T PRK08276        377 GY  378 (502)
T ss_pred             EE
Confidence            63

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-46  Score=339.96  Aligned_cols=393  Identities=20%  Similarity=0.217  Sum_probs=313.2

Q ss_pred             CCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           23 SDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        23 ~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      ..++.|+.++|.++++++|+|+|+++.+..+++||+|+.+.++++|+.|...|++.||.|+|.++|.+|++..+|+++++
T Consensus        73 rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl  152 (649)
T KOG1179|consen   73 RRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL  152 (649)
T ss_pred             hccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence            34458999999999999999999999977789999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCC----cEEeccCCcccccccccccccccchhhhhhhc
Q 013850          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (435)
Q Consensus       103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (435)
                      |++..-||++.-.+.+.|.++.++++.+|++++..+.+.+....    .+-+...+.      -....+..++...++..
T Consensus       153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~------~~~~~g~~~L~~~l~~~  226 (649)
T KOG1179|consen  153 GVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGP------TSVPDGIESLLAKLSAA  226 (649)
T ss_pred             CceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCC------CCCCchHHHHHHhhccc
Confidence            99999999999999999999999999999999988877766321    111111110      02222333444444433


Q ss_pred             CCCC--CCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHh
Q 013850          179 GSVT--DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (435)
Q Consensus       179 ~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~  256 (435)
                      ...+  .......+-.++++.+|||||||.||+.+++|...............+...  |+++.++|++|.+|.+..+..
T Consensus       227 ~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~--DvvY~~lPLYHsaa~ilGi~~  304 (649)
T KOG1179|consen  227 PKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTAD--DVVYTTLPLYHSAAGILGIGG  304 (649)
T ss_pred             ccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCcc--ceEEEcchhHHHHHHHHHHHH
Confidence            3211  122345566789999999999999999999999988876655555666444  999999999999999999999


Q ss_pred             hhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCC
Q 013850          257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (435)
Q Consensus       257 ~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~  336 (435)
                      ++..|+|+++-..|+...+|+...+|+||++.-.-.+.+.|++++..+...-+.+|..+-.|  +.+++++.|.++|+..
T Consensus       305 ~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~  382 (649)
T KOG1179|consen  305 CLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGII  382 (649)
T ss_pred             HHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999988888889999987666  8899999999999978


Q ss_pred             eeecCcCcccccccccccCCCCCCcCCCCccc------ccCCcEEEEEeCCCCc----------cCCCCCceeEEEeC--
Q 013850          337 TIFQGYGMTETCAPISLENPLVGVRRSGSAGT------LVAGVEAQIVSVDTLK----------PLPPNQLGEIWVRG--  398 (435)
Q Consensus       337 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~------~~~~~~~~i~d~~~~~----------~~~~g~~Gei~v~g--  398 (435)
                      ++.+.||+||...- ..+.    +.+.+.+|+      -+-.+++-=+|+++++          +|++||+|.++-+-  
T Consensus       383 ~IgE~YgaTEgn~~-~~N~----d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~  457 (649)
T KOG1179|consen  383 KIGEFYGATEGNSN-LVNY----DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQ  457 (649)
T ss_pred             eEEEEeccccCcce-eeee----cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEecc
Confidence            89999999995543 3333    334444443      2223344335666774          48899999765332  


Q ss_pred             --C-CccccccccCCcccccccc--ccccc-CcceecCCC
Q 013850          399 --P-NVTPGIVYINFFVFTLFLW--GCEHT-DSFIRGKDQ  432 (435)
Q Consensus       399 --~-~~~~g~~y~~~~~~~~~~~--~~~~~-~~~~~tgD~  432 (435)
                        | .-+.|  |.++.+.|+++.  .-|.. |-||.|||+
T Consensus       458 k~P~~~F~G--Y~g~~~~t~kKl~rDVFkkGD~~f~tGDl  495 (649)
T KOG1179|consen  458 KNPLRSFLG--YAGPKKATEKKLLRDVFKKGDVYFNTGDL  495 (649)
T ss_pred             CCchhhhcc--ccCchhhhhhhhHHhhhccCcEEEeeCcE
Confidence              2 23889  999888887766  33444 448888885

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-46  Score=387.70  Aligned_cols=387  Identities=14%  Similarity=0.168  Sum_probs=285.1

Q ss_pred             CCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        24 ~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .++.|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|+++|+++||+|+|+++|+++++++++||+++|
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aG  521 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLG  521 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence            34489999999999999999999986  4799999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCC
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (435)
                      ++++|++|.   +++.++++.++++++|++++..+.+.......+++ ......... .........+++..........
T Consensus       522 av~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  596 (994)
T PRK07868        522 AVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVL-GGGESRDLD-LPDDADVIDMEKIDPDAVELPG  596 (994)
T ss_pred             CEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEe-cCCcccccc-CCcchhhhhhhhcCcccccCCc
Confidence            999999985   57899999999999999987776665443333322 211000000 0000011111111110000000


Q ss_pred             -CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCc
Q 013850          184 -IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (435)
Q Consensus       184 -~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~  262 (435)
                       .......++++++|+|| ||||.||++.++|.++............+  ..+|++++.+|++|.+++...++.++..|+
T Consensus       597 ~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l--~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~  673 (994)
T PRK07868        597 WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAAL--DRRDTVYCLTPLHHESGLLVSLGGAVVGGS  673 (994)
T ss_pred             ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCC--CCCCeEEEecChHHHhHHHHHHHHHhccce
Confidence             01112236899999998 57777787777887765543332222333  334999999999999999766677788888


Q ss_pred             EEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       263 ~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.++.  +.+++++.+++.+.++++++++.|
T Consensus       674 ~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~Y  751 (994)
T PRK07868        674 RIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFF  751 (994)
T ss_pred             EEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEec--CCCCHHHHHHHHHHhCchheeeee
Confidence            888888899999999999999999999999999999875555556789998763  349999999999999878999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCc-EEEEE--eC--------CCC--ccCCCCCceeEEEeCCCccccccccC
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGV-EAQIV--SV--------DTL--KPLPPNQLGEIWVRGPNVTPGIVYIN  409 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~--d~--------~~~--~~~~~g~~Gei~v~g~~~~~g~~y~~  409 (435)
                      |+||++.....  ..  ..+.+++|+|++|+ +++|.  |+        ++|  +.++.|+.|||+++++.      |+ 
T Consensus       752 G~TE~~~~~~~--~~--~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~------~~-  820 (994)
T PRK07868        752 ATTDGQAVLAN--VS--GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARG------PI-  820 (994)
T ss_pred             ecccccccccc--cC--CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCC------CC-
Confidence            99997754332  11  34668999999997 66664  21        345  56788999999999973      44 


Q ss_pred             Cccccccccccc-ccCcceecCCCCC
Q 013850          410 FFVFTLFLWGCE-HTDSFIRGKDQQT  434 (435)
Q Consensus       410 ~~~~~~~~~~~~-~~~~~~~tgD~~~  434 (435)
                      +|+.+... +.| +.++||+|||+++
T Consensus       821 ~p~~t~~~-~~~~~~dgw~~TGDlg~  845 (994)
T PRK07868        821 DPTASVKR-GVFAPADTWISTEYLFR  845 (994)
T ss_pred             ChhhhhHh-cccccCCEEEeccceEE
Confidence            34433222 222 2478999999874

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=6.4e-45  Score=355.01  Aligned_cols=338  Identities=22%  Similarity=0.307  Sum_probs=274.6

Q ss_pred             chHHHH-HhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           28 SMVHFL-FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        28 tl~~~l-~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      ++.+.+ .++++++|+++|+++.  ++.+||.||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~~a~~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~   80 (458)
T PRK09029          3 IFSDWPWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV   80 (458)
T ss_pred             hhhcChHHHHHHhCCCceeeecC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence            344444 4557899999999875  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++..+.+++..+++.+++++++++++... +....  .                     ....     ..  .....
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~--~---------------------~~~~-----~~--~~~~~  129 (458)
T PRK09029         81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSALT--S---------------------LHLQ-----LV--EGAHA  129 (458)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhcc--c---------------------cccc-----cc--cccCc
Confidence            99999999999999999999999999876532 11000  0                     0000     00  11122


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++++|||||||.||+|.++|+++............+..  +++++..+|++|.+++. .++.++..|+++++
T Consensus       130 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v~~  206 (458)
T PRK09029        130 VAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTA--QDSWLLSLPLFHVSGQG-IVWRWLYAGATLVV  206 (458)
T ss_pred             ccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCc--cceEEEecCcHhhhhhH-HHHHHHhCCceEEe
Confidence            3456889999999999999999999999999988766554444433  38999999999999985 67788999999998


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccc
Q 013850          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  346 (435)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE  346 (435)
                      .+.   ..+++.+.  ++|.+..+|+++..|......    ..++|.+++||+++++.+.+++.+.  +.++++.||+||
T Consensus       207 ~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE  275 (458)
T PRK09029        207 RDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTE  275 (458)
T ss_pred             CCh---HHHHHHHh--hceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccc
Confidence            874   45677774  799999999999999876543    3479999999999999999999765  599999999999


Q ss_pred             ccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcc
Q 013850          347 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSF  426 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~  426 (435)
                      ++........    ....++|+|+++++++|++            |||+++|+.++.|  ||++++.+....    .++|
T Consensus       276 ~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~g--Y~~~~~~~~~~~----~~~~  333 (458)
T PRK09029        276 MASTVCAKRA----DGLAGVGSPLPGREVKLVD------------GEIWLRGASLALG--YWRQGQLVPLVN----DEGW  333 (458)
T ss_pred             cCcceeccCC----CCCCCCCCCCCCCEEEEeC------------CEEEEecCceeee--eecCcccccccc----CCCc
Confidence            8865543322    1235699999999999976            8999999999999  999998876533    4789


Q ss_pred             eecCCCCC
Q 013850          427 IRGKDQQT  434 (435)
Q Consensus       427 ~~tgD~~~  434 (435)
                      |+|||+++
T Consensus       334 ~~TGD~~~  341 (458)
T PRK09029        334 FATRDRGE  341 (458)
T ss_pred             cCCCCcEE
Confidence            99999864

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=2.7e-45  Score=355.16  Aligned_cols=314  Identities=18%  Similarity=0.238  Sum_probs=251.3

Q ss_pred             ceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 013850           54 SLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  132 (435)
Q Consensus        54 ~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~  132 (435)
                      -+.|+||.++++++|+.|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            46899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceee
Q 013850          133 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  212 (435)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  212 (435)
                      +.+.....            .         .      .           .........++++++++|||||||.||+|.+
T Consensus        99 ~~~~~~~~------------~---------~------~-----------~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~  140 (452)
T PRK07445         99 LDQLKLSH------------P---------P------P-----------LPSQGILPNLETGWIMIPTGGSSGQIRFAIH  140 (452)
T ss_pred             cCcccccc------------C---------C------C-----------CCccccCCCCCCcEEEEeCCCCCCCCcEEEe
Confidence            76532100            0         0      0           0000112356899999999999999999999


Q ss_pred             ccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHH
Q 013850          213 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP  292 (435)
Q Consensus       213 t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~  292 (435)
                      ||+++.............   .+++.++.+|++|.+|+. .++.++..|+++++.+............++++|++.++|+
T Consensus       141 t~~~l~~~~~~~~~~~~~---~~~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~  216 (452)
T PRK07445        141 TWETLTASVQGFQRYFQL---QQVNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPT  216 (452)
T ss_pred             chHHHHHHHHHHHHHhcC---CCCceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHH
Confidence            999998876655444333   235678899999999995 7888999999999886332222234445788999999999


Q ss_pred             HHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCC
Q 013850          293 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG  372 (435)
Q Consensus       293 ~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~  372 (435)
                      ++..|.+..   ...+++||.+++||+++++++.+++++.  +.++++.||+||++..+....+.+......++|+|+++
T Consensus       217 ~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~  291 (452)
T PRK07445        217 QLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPH  291 (452)
T ss_pred             HHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCCcCCccCCC
Confidence            999998732   3357899999999999999999988764  59999999999988665544333222346789999999


Q ss_pred             cEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          373 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       373 ~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++++|+         .|+.|||+++|+.++.|  ||+++.         ..++||+|||+++
T Consensus       292 ~~v~i~---------~g~~Gel~v~g~~~~~g--Y~~~~~---------~~~g~~~TGDl~~  333 (452)
T PRK07445        292 AQITIP---------ANQTGNITIQAQSLALG--YYPQIL---------DSQGIFETDDLGY  333 (452)
T ss_pred             CeEEEc---------CCCcceEEEeCCccchh--hcCCcc---------CCCCEEECCCEEE
Confidence            999997         36789999999999999  997543         2367888888763

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.9e-44  Score=346.39  Aligned_cols=329  Identities=26%  Similarity=0.345  Sum_probs=266.0

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccc
Q 013850           56 SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE  135 (435)
Q Consensus        56 Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~  135 (435)
                      ||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccH
Q 013850          136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK  215 (435)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~  215 (435)
                      .....      ...                   ..+..+...... ..........+++++++|||||||.||+|.++|+
T Consensus        81 ~~~~~------~~~-------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~  134 (436)
T TIGR01923        81 LEEKD------FQA-------------------DSLDRIEAAGRY-ETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFR  134 (436)
T ss_pred             ccccc------eee-------------------cchHhhhhcccc-cccccccCCcCceEEEEeCCCCCCCCcEEEEehH
Confidence            42110      000                   011111111110 1111234567899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHH
Q 013850          216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL  295 (435)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~  295 (435)
                      ++...+..........  .+|++++.+|++|..++. .++.++..|+++++.+.++  .+++.++++++|++.++|+++.
T Consensus       135 ~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~  209 (436)
T TIGR01923       135 NHYASAVGSKENLGFT--EDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLN  209 (436)
T ss_pred             HHHHHHHHHHhhcCCC--CCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHH
Confidence            9988877665544433  339999999999999984 7889999999999997653  9999999999999999999999


Q ss_pred             HHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEE
Q 013850          296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA  375 (435)
Q Consensus       296 ~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  375 (435)
                      .|.+....    .+++|.++++|+++++++.+.+++.  +.++++.||+||++.............+. .+|.|++++++
T Consensus       210 ~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~~  282 (436)
T TIGR01923       210 RLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARP-DVGRPLAGREI  282 (436)
T ss_pred             HHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccccccc-CCCccCCCcEE
Confidence            99886532    2689999999999999999998765  59999999999998766554433222223 48999999999


Q ss_pred             EEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          376 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       376 ~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|.+.+.      ++.|||+++|+.++.|  ||++++.+...+    .++||+|||+++
T Consensus       283 ~i~~~~~------~~~Gel~v~~~~~~~g--y~~~~~~~~~~~----~~~~~~TGD~~~  329 (436)
T TIGR01923       283 KIKVDNK------EGHGEIMVKGANLMKG--YLYQGELTPAFE----QQGWFNTGDIGE  329 (436)
T ss_pred             EEEeCCC------CCceEEEEECCccchh--hCCChhhhhhhh----cCCCeeccceEE
Confidence            9944222      2779999999999999  999888876654    357888888763

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-43  Score=337.43  Aligned_cols=409  Identities=24%  Similarity=0.310  Sum_probs=316.5

Q ss_pred             CCCCCCCCCCCchHHHHHhhc-c-cCCCceeeeecCC----CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC
Q 013850           17 PPLVLPSDPSFSMVHFLFRNS-A-SYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI   90 (435)
Q Consensus        17 ~~~~~~~~~~~tl~~~l~~~~-~-~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~   90 (435)
                      ++......  .+..+.+..+. + ..+++++++....    ...+||+|+.+++.++|+.|++.|+++||+|++++|+.+
T Consensus        55 ~~w~~g~~--ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~  132 (626)
T KOG1175|consen   55 TKWFPGAF--LNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIP  132 (626)
T ss_pred             ccccccch--hhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCCh
Confidence            33344443  55555554443 2 3588888875532    245899999999999999999889999999999999999


Q ss_pred             cHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccc------cc-ccc
Q 013850           91 HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS------SG-LIS  163 (435)
Q Consensus        91 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~  163 (435)
                      ++++++|||+++|++..++-..+++.++...++.+++++|++.+......+......++...-.....      .. ...
T Consensus       133 e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~  212 (626)
T KOG1175|consen  133 EAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVS  212 (626)
T ss_pred             HHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEe
Confidence            99999999999999999999999999999999999999999998766655444422111110000000      00 000


Q ss_pred             ccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecch
Q 013850          164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP  243 (435)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~  243 (435)
                      .......+++++....  ...++...+.+|+.+|+|||||||.||++.+++.......... ....+....+|++++...
T Consensus       213 ~~~~d~~~~~~~~~a~--~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~-~~~~~d~q~~dv~~~~~d  289 (626)
T KOG1175|consen  213 RRNRDLFWSLELKKAS--PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALT-SRYHFDLQPSDVLWCASD  289 (626)
T ss_pred             cccccccHHHHhhhcC--CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhh-cceeccCCCcceEEEecc
Confidence            1111335555555544  5555888899999999999999999999999988765553322 222233344499999999


Q ss_pred             HHHHHHHHHHHHhhhhcCcEEEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc--CCCCcceeEEEecCC
Q 013850          244 MFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAA  319 (435)
Q Consensus       244 l~~~~g~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~i~~gG~  319 (435)
                      ..|+.+.++..+.+|.+|+++++.+  ++++..+++.+.++++|.+++.|+.++.|.+.....  .+++++||.+.++||
T Consensus       290 ~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Ge  369 (626)
T KOG1175|consen  290 LGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGE  369 (626)
T ss_pred             cCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCc
Confidence            9999999988999999999999985  459999999999999999999999999887764443  344567999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCC-CceeEEEeC
Q 013850          320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN-QLGEIWVRG  398 (435)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g-~~Gei~v~g  398 (435)
                      ++.++..+++.+.++..++++.||+||+|+.+....+.....++++.+.|.+|+.+.|.| ++|..++.+ +.|+|+++.
T Consensus       370 pi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~  448 (626)
T KOG1175|consen  370 PINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKP  448 (626)
T ss_pred             cCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeC
Confidence            999999999999998447999999999999888766663347899999999999999999 588888876 899999988


Q ss_pred             C---CccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 P---NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 ~---~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +   +.+.+  ||+|++.-... .+.+-.||+.|||+++
T Consensus       449 ~~P~~~~r~--~~~n~erf~~~-yf~k~pg~y~tGD~~~  484 (626)
T KOG1175|consen  449 PWPPGMFRT--LWGNHERFRAA-YFKKFPGYYFTGDGGR  484 (626)
T ss_pred             CCCcccccc--ccCCHHHhhhh-hcccCCceEEecCceE
Confidence            5   67899  99999932221 2333467888998874

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.7e-43  Score=347.97  Aligned_cols=338  Identities=18%  Similarity=0.197  Sum_probs=246.3

Q ss_pred             cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcccc------HHHHhhc----CCCcEEeccCCc
Q 013850           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL------WDKVKDL----NLPAVLLGSKDK  155 (435)
Q Consensus        86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~------~~~~~~~----~~~~~~~~~~~~  155 (435)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..      .+.+...    ....+++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998643      1111111    111122211110


Q ss_pred             ccccccccccccccchhhhhhhcCC-----CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh
Q 013850          156 VSSSGLISRSSKIVSFHDLIELSGS-----VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL  230 (435)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~  230 (435)
                      ....   ........+++++.....     .....+....++++++|+|||||||.||+|++||+++............+
T Consensus        81 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~  157 (499)
T PLN03051         81 PVAV---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDI  157 (499)
T ss_pred             ccCC---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCC
Confidence            0000   000112345555422110     00111222356899999999999999999999999987764433333333


Q ss_pred             ccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCC
Q 013850          231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFD  307 (435)
Q Consensus       231 ~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~  307 (435)
                        ..+|++++.+|++|..++. .++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|++...  ....+
T Consensus       158 --~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~  234 (499)
T PLN03051        158 --QPGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLD  234 (499)
T ss_pred             --CCCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCC
Confidence              2349999999999999974 7888999999999886 4788999999999999999999999999987653  34557


Q ss_pred             CcceeEEEecCCCCcHHHHHHHHhhCC-CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccC
Q 013850          308 ISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL  386 (435)
Q Consensus       308 l~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  386 (435)
                      +++||.+++||+++++++.+++++.++ ++++++.||+||+++.+....... ..+.+++|+|.++++++|+| ++++++
T Consensus       235 ~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~ivd-~~g~~~  312 (499)
T PLN03051        235 WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ-PQAPGAFSTASLGTRFVLLN-DNGVPY  312 (499)
T ss_pred             chhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccC-CCCCccccCCCCCceEEEEC-CCCCCC
Confidence            889999999999999999988877432 378999999999875443322221 33567899999999999999 688999


Q ss_pred             CCC--CceeEEEeCCCc--cccccccCCcccccccc-c--cc--ccCcceecCCCCC
Q 013850          387 PPN--QLGEIWVRGPNV--TPGIVYINFFVFTLFLW-G--CE--HTDSFIRGKDQQT  434 (435)
Q Consensus       387 ~~g--~~Gei~v~g~~~--~~g~~y~~~~~~~~~~~-~--~~--~~~~~~~tgD~~~  434 (435)
                      +.|  ++|||+++||.+  +.|  ||+++. +...+ +  |+  ....||+|||+++
T Consensus       313 ~~g~~~~Gel~v~g~~~~~~~g--y~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~  366 (499)
T PLN03051        313 PDDQPCVGEVALAPPMLGASDR--LLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMK  366 (499)
T ss_pred             CCCCCcceEEEEecCcCCCCcc--ccCCcc-cceeeecCCccccCCcceeecCCeEE
Confidence            988  589999999976  589  998653 33222 2  22  1224789999874

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-41  Score=323.32  Aligned_cols=288  Identities=17%  Similarity=0.146  Sum_probs=242.8

Q ss_pred             eeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc
Q 013850           46 LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS  125 (435)
Q Consensus        46 ~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~  125 (435)
                      ++..  ++.+||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++++
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~   78 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRA   78 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhC
Confidence            4444  479999999999999999985 6899999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCC
Q 013850          126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  205 (435)
Q Consensus       126 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  205 (435)
                      +++++++++....          .             .                   .  .....++++++++|||||||
T Consensus        79 ~~~~~i~~~~~~~----------~-------------~-------------------~--~~~~~~~~~~~i~~TSGtTG  114 (414)
T PRK08308         79 GCHGLLYGESDFT----------K-------------L-------------------E--AVNYLAEEPSLLQYSSGTTG  114 (414)
T ss_pred             CCCEEEecCcccc----------c-------------c-------------------c--CCCCCCCCceEEEECCCCCC
Confidence            9999998763100          0             0                   0  01235688999999999999


Q ss_pred             CccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCce
Q 013850          206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  285 (435)
Q Consensus       206 ~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t  285 (435)
                      .||+|.++|+++.+.+.........  ..+|+++..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|
T Consensus       115 ~PKgv~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t  192 (414)
T PRK08308        115 EPKLIRRSWTEIDREIEAYNEALNC--EQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQH  192 (414)
T ss_pred             CCcEEEEehHhHHHHHHHHHHhhCC--CcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCe
Confidence            9999999999998877665554443  33489999999999999877899999999999999889999999999999999


Q ss_pred             EEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCC
Q 013850          286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGS  365 (435)
Q Consensus       286 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  365 (435)
                      .+.++|+++..|.+....    ..+++.++.+|+++++++.+++++.  +.++++.||+||++.+....  .  ....++
T Consensus       193 ~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~--~--~~~~~~  262 (414)
T PRK08308        193 ILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICP--D--MKSHLD  262 (414)
T ss_pred             EEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecC--C--CCCCCc
Confidence            999999999999876432    2378899999999999999999987  47999999999988644322  1  235678


Q ss_pred             cccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          366 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       366 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      +|+|++++++++.+.       .++.|||++++.
T Consensus       263 ~G~p~~~~~~~~~~~-------~~~~gel~v~~~  289 (414)
T PRK08308        263 LGNPLPHVSVSAGSD-------ENAPEEIVVKMG  289 (414)
T ss_pred             cCccCCCeEEEEecC-------CCCCceEEEEcC
Confidence            999999999998752       256799999763

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.8e-40  Score=348.23  Aligned_cols=376  Identities=13%  Similarity=0.071  Sum_probs=279.3

Q ss_pred             CchHHHHHhhcccCCCceeeeec-CCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           27 FSMVHFLFRNSASYSSKLALIDA-DSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~-~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      .|+.++|.+.++++|+++|+... +.+  +++||+|+.++++++|++|+++|+++||+|+|+++|+++|+++.+||+++|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G  506 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG  506 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            79999999999999999999742 113  689999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC---CCcEEeccCCcc-cc-cccccccccccchhhhhhhc
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKV-SS-SGLISRSSKIVSFHDLIELS  178 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  178 (435)
                      ++.+|+.+  +.+++.++++.++++++|++.+....+....   .+.+++...... .. ...........+|+++++.+
T Consensus       507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G  584 (1452)
T PTZ00297        507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG  584 (1452)
T ss_pred             CEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence            99999975  4678999999999999999988777665543   334444321100 00 00001112356788888765


Q ss_pred             CCCCCCCCCCCCCCCEEEEEe---CCCCCCCccceeeccHHHHHHHHHHHhhhhhc-cCCCcEEEecchHHHHHHHHHHH
Q 013850          179 GSVTDIPDVSVKQTDAAALLY---SSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCVLPMFHVFGLSVIL  254 (435)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~l~~~~l~~~~g~~~~~  254 (435)
                      ............++|++.|+|   ||||||.||||++||+|+++.+.......... ...+|++++++|++|+++.. ..
T Consensus       585 ~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~-~~  663 (1452)
T PTZ00297        585 RLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV-FV  663 (1452)
T ss_pred             cccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH-HH
Confidence            421112233457889999985   99999999999999999999987654432211 12349999999999999974 67


Q ss_pred             HhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc--------------------------CC-C
Q 013850          255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--------------------------KF-D  307 (435)
Q Consensus       255 ~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------~~-~  307 (435)
                      +.++..|+++.+   +++..+++.|++++||++.++|++|..+.+....+                          .. .
T Consensus       664 ~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~  740 (1452)
T PTZ00297        664 LGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDS  740 (1452)
T ss_pred             HHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            788999999875   36899999999999999999999998775531110                          00 0


Q ss_pred             ---------------CcceeEEEecCC--CCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCccccc
Q 013850          308 ---------------ISSLKLVGSGAA--PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV  370 (435)
Q Consensus       308 ---------------l~~lr~i~~gG~--~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~  370 (435)
                                     -.++|.+++||+  +++..+..       +.+++.+||.||+.   +.+.+.  ..+  ..|.|+
T Consensus       741 ~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~glTE~~---~~~~~~--~~~--~~G~Pl  806 (1452)
T PTZ00297        741 SLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPCLREVF---FLPSEG--VFC--VDGTPA  806 (1452)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecceEEee---eecCCC--Ccc--cCCeec
Confidence                           046888888873  44433322       37788899999943   223222  222  349999


Q ss_pred             CCcEEEEEeC-CCCccCCCCCceeEEEeCCCccccccccCCcccccccc-cccccCcceecCCCCCC
Q 013850          371 AGVEAQIVSV-DTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW-GCEHTDSFIRGKDQQTD  435 (435)
Q Consensus       371 ~~~~~~i~d~-~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~-~~~~~~~~~~tgD~~~d  435 (435)
                      |++++||.+. |.+.   .+..|||++       +  |+++|+.|.+.+ +|++ +|+++.-||.||
T Consensus       807 pgvEvKI~~~~E~~~---~~~~GEIlv-------r--~~kdpe~T~e~~~gW~~-dG~L~IidRkKd  860 (1452)
T PTZ00297        807 PSLQVDLEPFDEPSD---GAGIGQLVL-------A--KKGEPRRTLPIAAQWKR-DRTLRLLGPPLG  860 (1452)
T ss_pred             CceEEEEcccccccC---CCCCCeEEE-------E--ECCChHHHHHhhCcCcc-CCeEEEEecccc
Confidence            9999999863 3322   134699999       4  678999999876 7775 578888888886

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5e-36  Score=304.48  Aligned_cols=373  Identities=22%  Similarity=0.288  Sum_probs=301.0

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.+.|..++...|++.|++..  +..+||+++..+++++|+.|.+.|+.++++|+++.+++.+++++++|++++|+.+
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~y  304 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAY  304 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeE
Confidence            68999999999999999999987  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++.++.+++..+++.++++.+++.............    +                   ..+........ .....
T Consensus       305 vP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~-~~~~~  360 (642)
T COG1020         305 VPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG----L-------------------ALDDALSEIPD-TDPIP  360 (642)
T ss_pred             ecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc----c-------------------ccccccccCCc-cCccc
Confidence            999999999999999999999999998333221111100    0                   00000000000 01112


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....+++.++++|||||||.||||..+|+++.+...+.......  ..+|+++...++....... .++.++..|+++++
T Consensus       361 ~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~--~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l~~  437 (642)
T COG1020         361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGL--DADDRVLALASLSFDASVF-EIFGALLEGARLVL  437 (642)
T ss_pred             ccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCC--CcccEEeecCCcccchhHH-HHHHHHhCCCEEEe
Confidence            34456899999999999999999999999999865555444333  3338999999997777774 89999999999999


Q ss_pred             cCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecCCCCcHHHHHHHHhhCC-CCeeec
Q 013850          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQ  340 (435)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~~~~  340 (435)
                      .+.   .++..+.+.+.++++|++..+|.++..+........  ...+.+|.+++||+.++..+..++....+ ...+.+
T Consensus       438 ~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~  517 (642)
T COG1020         438 APALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN  517 (642)
T ss_pred             cCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEee
Confidence            963   589999999999999999999999999988632222  22335999999999999999999988764 478999


Q ss_pred             CcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850          341 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  420 (435)
Q Consensus       341 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~  420 (435)
                      .||.||+..................+|+|+++..+.|+| +.+++++.|..||+++.|.++..|  |++.|+.|.+.|-.
T Consensus       518 ~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~g--y~~~p~lt~~~f~~  594 (642)
T COG1020         518 LYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALG--YLNRPDLTAERFIA  594 (642)
T ss_pred             ccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhh--hcCChhhhHHHhhh
Confidence            999999665444332221111156899999999999999 799999999999999999999999  99999999999832


Q ss_pred             cccCcceecCCCCC
Q 013850          421 EHTDSFIRGKDQQT  434 (435)
Q Consensus       421 ~~~~~~~~tgD~~~  434 (435)
                      .   .+|+|||+++
T Consensus       595 ~---~~y~tgD~~r  605 (642)
T COG1020         595 L---RLYRTGDLAR  605 (642)
T ss_pred             c---cCccCCCeee
Confidence            2   3999999875

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.96  E-value=2.4e-28  Score=212.82  Aligned_cols=220  Identities=19%  Similarity=0.137  Sum_probs=164.6

Q ss_pred             HHhhcccCCCceeeeec-C---CCcceeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEE
Q 013850           33 LFRNSASYSSKLALIDA-D---SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (435)
Q Consensus        33 l~~~~~~~p~~~a~~~~-~---~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v  107 (435)
                      |++.++.+|+++|++.. +   .+.++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56778899999999743 2   23579999999999999999998 7999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCCC
Q 013850          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (435)
Q Consensus       108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (435)
                      |+|             .+++++++++++..+.+.. ......+...... .....+...+..++.+......  ....+.
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  144 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAG-SGEVVALSLDPLG-RRVAGELPPGVIDFAPEVRVHG--DQFAPY  144 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhccc-CCceEEEeccccc-cCCCCCCCCcccchhhhhhccC--CCCCCC
Confidence            995             6799999999888777542 2222222110000 0000011223345555554322  222222


Q ss_pred             -CCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          188 -SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       188 -~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                       ...++|++.|+||||+         +|++++...    ....+  ..+|+++ .+|++|.+|+...++.++..|+++++
T Consensus       145 ~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l--~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~  208 (227)
T TIGR03089       145 EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGL--PPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVL  208 (227)
T ss_pred             CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCC--CCCCeEE-ecCCCchHHHHHHHHHHhccCceEEE
Confidence             4567999999999985         566665553    22223  3349999 99999999998789999999999999


Q ss_pred             cCCCCHHHHHHHHHhcCce
Q 013850          267 MGKFDIEMALRAIEKYRVT  285 (435)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t  285 (435)
                      .+.|++..+++.|+++|||
T Consensus       209 ~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       209 VTHPDPARLDQIAETERVT  227 (227)
T ss_pred             ecCCCHHHHHHHHHhhcCC
Confidence            9999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=6e-28  Score=227.82  Aligned_cols=209  Identities=24%  Similarity=0.320  Sum_probs=169.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++++|||||||.||+|.++|+++..........  +.  ..++++..+|++|.+++. .++.++..|+++++
T Consensus        30 ~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~--~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~  104 (358)
T PRK07824         30 GEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LG--GPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVE  104 (358)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cC--CCCeEEEECChHHHHHHH-HHHHHHHcCCeEEe
Confidence            34457899999999999999999999999998876543332  21  237899999999999985 67788888998887


Q ss_pred             ---cCCCCHHHHHHHHHhcC--ceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecC
Q 013850          267 ---MGKFDIEMALRAIEKYR--VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQG  341 (435)
Q Consensus       267 ---~~~~~~~~~~~~l~~~~--~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~  341 (435)
                         ...+++..+++.+++++  .++...+|..+..++..... ...++++|.+++||+++++++.+++.+.  ++++++.
T Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~  181 (358)
T PRK07824        105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRT  181 (358)
T ss_pred             cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEec
Confidence               34678999999999998  56677789888877765432 3467899999999999999999998864  5999999


Q ss_pred             cCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          342 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       342 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      ||+||++..+.            ..|.|++++++++.|            |||+++|+.++.|  |+++++.+.  +   
T Consensus       182 YG~TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~g--Y~~~~~~~~--~---  230 (358)
T PRK07824        182 YGMSETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKG--YRNPVDPDP--F---  230 (358)
T ss_pred             ccCCccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccc--cCCCccccc--c---
Confidence            99999875431            348899999999843            8999999999999  999887542  2   


Q ss_pred             ccCcceecCCCCC
Q 013850          422 HTDSFIRGKDQQT  434 (435)
Q Consensus       422 ~~~~~~~tgD~~~  434 (435)
                      ..+|||+|||+++
T Consensus       231 ~~~g~~~TGDl~~  243 (358)
T PRK07824        231 AEPGWFRTDDLGA  243 (358)
T ss_pred             cCCCceecccEEE
Confidence            2467999999764

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=216.78  Aligned_cols=390  Identities=16%  Similarity=0.187  Sum_probs=274.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      .++.|+|+.+++.+|+.+|+...+    .+..+||.+|..++.+++..|... -+++||.|+|++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            689999999999999999997553    227899999999999999999754 679999999999999999999999999


Q ss_pred             cCcEEEecCCCCC------HHHHHHHHHhcCCeEEEEccccHHHHhhcCC---------CcEEeccCCcccccccccccc
Q 013850          102 IGAIASTANPVYT------VSELSKQVKDSNPKLVITVPELWDKVKDLNL---------PAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus       102 ~G~~~v~i~~~~~------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +|.+++|+.|.-.      ...+..+++.+++..|+++......++....         ..++...+          .. 
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~----------~~-  918 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPK----------LP-  918 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccc----------cc-
Confidence            9999999988653      3667889999999999999876665544321         11111111          00 


Q ss_pred             cccchhhhhh-hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHH
Q 013850          167 KIVSFHDLIE-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (435)
Q Consensus       167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~  245 (435)
                        .++..... ........++...++..+|++-+.--++|.--++.++|..+++......+...+...  .-++.+.+.+
T Consensus       919 --~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~--rpl~~~~~~~  994 (1363)
T KOG3628|consen  919 --ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKS--RPLLGCSSPY  994 (1363)
T ss_pred             --hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccC--CceEEEecCc
Confidence              00110000 000011122334466889999999899999999999999999998887777777555  6677777777


Q ss_pred             HHHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcce------eEEE
Q 013850          246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL------KLVG  315 (435)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l------r~i~  315 (435)
                      ...|+..+.+..++.|.+.++.++    -|+..+++.++++++.-++.+=..+..+.+.-..+..+++..      ..++
T Consensus       995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv 1074 (1363)
T KOG3628|consen  995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVV 1074 (1363)
T ss_pred             cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceee
Confidence            777888889999999999777754    379999999999999999988888887777544433333221      2333


Q ss_pred             ecCCCCcHHHHHHHHhhCCC-----CeeecCcCcccccccccccCCC--------CC----CcC-------------CCC
Q 013850          316 SGAAPLGKELMEDCQKNIPG-----ATIFQGYGMTETCAPISLENPL--------VG----VRR-------------SGS  365 (435)
Q Consensus       316 ~gG~~l~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~--------~~----~~~-------------~~~  365 (435)
                      ..-+.....+.+-+.+.|..     ..+.-.|++-=--.++...+..        +.    ..+             ...
T Consensus      1075 ~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~d 1154 (1363)
T KOG3628|consen 1075 PAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYD 1154 (1363)
T ss_pred             ecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcccccc
Confidence            34445455666666665531     2233334433211121111100        00    000             012


Q ss_pred             cccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccc-cc------cccccCcceecCCCC
Q 013850          366 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF-LW------GCEHTDSFIRGKDQQ  433 (435)
Q Consensus       366 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~-~~------~~~~~~~~~~tgD~~  433 (435)
                      .|+..+++++.|++||+..+|..|+.||||+.|.+-+.+  |++-.+..+. .|      |...+..|.||||++
T Consensus      1155 SG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~--~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LG 1227 (1363)
T KOG3628|consen 1155 SGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASC--SFTIGDELRSNHFNARLSSGDLLGKSYARTGDLG 1227 (1363)
T ss_pred             CCcccccceeEEeCCccccccccCCcceEEecccccccc--ccccCchhhhhhhhhhccccccccccceeeeeee
Confidence            388889999999999999999999999999999998888  7764332211 11      555556899999987

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.94  E-value=1.4e-25  Score=216.01  Aligned_cols=203  Identities=19%  Similarity=0.198  Sum_probs=153.9

Q ss_pred             CCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecC
Q 013850          190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  268 (435)
Q Consensus       190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~  268 (435)
                      .+++++++++||||||.||+|.++|.++............... ..+|++++..+..+..+.+...+.++..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            4567889999999999999999999998766443333222222 233888877665544443334566778899998887


Q ss_pred             CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccc
Q 013850          269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE  346 (435)
Q Consensus       269 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE  346 (435)
                      ..++..+++.|+++++|++.++|+++..|++.....+.+  ..++|.+++|||++++++.+.+++.|+ +++++.||+||
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~tE  231 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGLSE  231 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccchh
Confidence            778899999999999999999999999998765443332  358999999999999999999999997 99999999999


Q ss_pred             ccc-cccccCCCCCCcCCCCccccc--CCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          347 TCA-PISLENPLVGVRRSGSAGTLV--AGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       347 ~~~-~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      +++ .+...+..      ...|.++  +++.++|+|+++++++++|+.|||++++.
T Consensus       232 ~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~  281 (422)
T TIGR02155       232 VIGPGVAMECVE------TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL  281 (422)
T ss_pred             hcCCceeecccc------cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC
Confidence            853 22222111      1123333  45778899988999999999999999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.91  E-value=6.4e-23  Score=197.73  Aligned_cols=199  Identities=20%  Similarity=0.205  Sum_probs=151.7

Q ss_pred             CCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEec
Q 013850          189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  267 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~  267 (435)
                      ...++++.+.+||||||.||+|.+||+++..........+.... ..+|+++...+..+..+.....+.++..|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            35678899999999999999999999998776554443332112 23388988888887766644456677888887654


Q ss_pred             CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCC--CCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcc
Q 013850          268 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT  345 (435)
Q Consensus       268 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~t  345 (435)
                      ..  ....++.++++++|.+.++|+.+..|++.....+.  ...++|.+++|||++++++.+.+.+.|+ +++++.||+|
T Consensus       163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~YG~T  239 (445)
T TIGR03335       163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG-CEVYNTYGST  239 (445)
T ss_pred             Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecCChh
Confidence            43  34678999999999999999998888765443332  2368999999999999999999999996 9999999999


Q ss_pred             cccccccccCCCCCCcCCCCccccc--CCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          346 ETCAPISLENPLVGVRRSGSAGTLV--AGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       346 E~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      |++. +. .+     ..  ..|..+  +.+.++|+|++++.++++|+.|||++++-
T Consensus       240 E~~~-~~-~c-----~~--~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L  286 (445)
T TIGR03335       240 EGTM-CG-EC-----QA--VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTL  286 (445)
T ss_pred             hhhh-eE-Ee-----cC--CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEec
Confidence            9752 22 11     11  123444  45789999998899999999999999875

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.90  E-value=1.7e-22  Score=190.00  Aligned_cols=171  Identities=17%  Similarity=0.108  Sum_probs=137.1

Q ss_pred             CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCC
Q 013850          192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD  271 (435)
Q Consensus       192 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~  271 (435)
                      +..++++|||||||.||+|.++|+++.+.+..............+++++.+|++|.+|+.+.++.++..|+++++...++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            55889999999999999999999999988766555444422323789999999999998767888999999999998888


Q ss_pred             HHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccc
Q 013850          272 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPI  351 (435)
Q Consensus       272 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~  351 (435)
                      +..+++.++.+  |++.++|++++.|.+..    .+++++|. ++||+++++++.+.+++. +...+++.||+||++++.
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~  246 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIG  246 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccc
Confidence            88888888653  89999999999998753    35677886 678999999999999886 325799999999998765


Q ss_pred             cccCCCCCCcCCCCcccccCCcEEEE
Q 013850          352 SLENPLVGVRRSGSAGTLVAGVEAQI  377 (435)
Q Consensus       352 ~~~~~~~~~~~~~~~G~~~~~~~~~i  377 (435)
                      ....       ++..|.++|++++++
T Consensus       247 ~~~~-------~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       247 LREA-------PDDPFRLLPDLACFA  265 (386)
T ss_pred             cccC-------CCCCcccCCCccccC
Confidence            4321       234577888877654

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.79  E-value=7.1e-18  Score=155.07  Aligned_cols=206  Identities=22%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCC-CcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ...-++...|-.||||||+|+.+..++..+......+...+...... +|++..+....-..|-...-+.+-..|++++-
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            34456777799999999999999999999988877777666555433 37766665532222221122334446777777


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  344 (435)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~  344 (435)
                      ..+-+.+..+++++++++|++.++|+.+..|++.....+  ..-.+||.+++|+|+++++..+.+.+.|+ +..++.||+
T Consensus       166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYGl  244 (438)
T COG1541         166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYGL  244 (438)
T ss_pred             cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeecccc
Confidence            766688999999999999999999999999999877764  23358999999999999999999999997 999999999


Q ss_pred             ccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          345 TETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       345 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      ||..+.....+..     ..-....-+...++|+||++++.++.|+.|||++..=
T Consensus       245 tE~~g~g~~eC~~-----~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L  294 (438)
T COG1541         245 TEGFGPGAGECTE-----RNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL  294 (438)
T ss_pred             ccccCCccccccc-----ccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEec
Confidence            9988775332222     1112223367888999999999999999999998763

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=3.2e-17  Score=165.39  Aligned_cols=308  Identities=18%  Similarity=0.154  Sum_probs=200.8

Q ss_pred             chHHHHHhhcccCCCceeeeecC----CC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           28 SMVHFLFRNSASYSSKLALIDAD----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~----~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      ++...+.+.+.+.|...+..+..    .+  ..+||++....++.+++.|...|...|+.|++++..+.++++..++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~  116 (1032)
T KOG1178|consen   37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA  116 (1032)
T ss_pred             chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence            55666777788888887775331    12  6899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCC----HHHHHHHHH-hcCCeEEEEccccHHHHhhcC-CCcEEeccCCcccccccccccccccchhhhh
Q 013850          102 IGAIASTANPVYT----VSELSKQVK-DSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (435)
Q Consensus       102 ~G~~~v~i~~~~~----~~~~~~~l~-~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (435)
                      +|.++++++|.++    +.++..+.. ......-+......-.+.... .+..              ........|..+.
T Consensus       117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~--------------sv~~~~~~f~~~~  182 (1032)
T KOG1178|consen  117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKL--------------SVETIADSFQMVL  182 (1032)
T ss_pred             cceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhcccccc--------------chhhccchhhhhh
Confidence            9999999999999    332221111 111111111111100000000 0000              0000011222211


Q ss_pred             hhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHH
Q 013850          176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY  255 (435)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~  255 (435)
                      .   ...........++..+.+.||||+||.||+|..+|..+.....+.........  .+++-.....+........+.
T Consensus       183 ~---~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~--s~~~~~~~~~~~~d~i~~~~~  257 (1032)
T KOG1178|consen  183 H---NEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTG--SDRFTFKTSVYFDDTIQKFIG  257 (1032)
T ss_pred             c---cCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCc--cchhhhhheeecccchHHHHh
Confidence            1   11223334567788999999999999999999999999998776655533322  254422223322222222344


Q ss_pred             hhhhcCcEEEecCCC---CHHHHHHHHHhcCceEEEecHHHHHHHHhccccc-------------CCCCcceeEEEecCC
Q 013850          256 DQLQKGNCVVSMGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR-------------KFDISSLKLVGSGAA  319 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~---~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-------------~~~l~~lr~i~~gG~  319 (435)
                      ..|..|+.+..+...   ++..+.+.+++++++..+.+|++.++++......             ....+.||....+|+
T Consensus       258 ~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~e  337 (1032)
T KOG1178|consen  258 ALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGE  337 (1032)
T ss_pred             hHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCC
Confidence            555566666655332   3799999999999999999999988887754331             112348999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeecCcCccccccccccc
Q 013850          320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE  354 (435)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~  354 (435)
                      +....+...+...+...-...-|+.++..+...+.
T Consensus       338 p~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~  372 (1032)
T KOG1178|consen  338 PLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYD  372 (1032)
T ss_pred             ccchhhhhhhhhcccceeeeecccCCCCccceeHH
Confidence            99999998666665422333348999888777654

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.72  E-value=1.6e-16  Score=156.22  Aligned_cols=373  Identities=17%  Similarity=0.188  Sum_probs=252.8

Q ss_pred             chHHHHHhhcccCCCceeeeecCCC---cceeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCC--CcHHHHHHHHHH
Q 013850           28 SMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSH-SFRHLGITKKDVVLIFAPNS--IHFPICFLGVIA  101 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~-~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~  101 (435)
                      .+...++..-..++...|.+.-+..   ..+||..+..++.++|+ .|-+-|+.++|+|.++...+  .++++..++|..
T Consensus        95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l  174 (1363)
T KOG3628|consen   95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL  174 (1363)
T ss_pred             chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence            3555665555677777787765433   68999999999999999 55567999999999999887  899999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +|.+++|+.+..+.+++..+++....+++++.......+.....+.-.             .....++...++-.... .
T Consensus       175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~-------------~k~v~~w~t~~~k~~~~-~  240 (1363)
T KOG3628|consen  175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSL-------------AKAVAWWKTNDFKGNYT-K  240 (1363)
T ss_pred             cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccH-------------HHHHHhhhcccccceee-h
Confidence            999999999999999999999999999999988766555433311100             01111111111110000 0


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhh-----------------cc-CCCcEEEecch
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-----------------VG-ELDHVVLCVLP  243 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-----------------~~-~~~d~~l~~~~  243 (435)
                      +....+...-. .++|-||++++|.--|++.+|. +..+.+.+......                 .. ...+.++....
T Consensus       241 ~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~  318 (1363)
T KOG3628|consen  241 DKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLD  318 (1363)
T ss_pred             hhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccC
Confidence            11112222233 8899999999999889999988 55554433221111                 01 12267777778


Q ss_pred             HHHHHHHHHHHHhhhhcCcEEEecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhc-----------ccccCCCCc
Q 013850          244 MFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKN-----------SLVRKFDIS  309 (435)
Q Consensus       244 l~~~~g~~~~~~~~l~~G~~i~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~-----------~~~~~~~l~  309 (435)
                      .....|++.+++.++..|.|.+.++.   ..|..+.+++.++|++++..--..+.+....           .+....+++
T Consensus       319 ~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~s  398 (1363)
T KOG3628|consen  319 PSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLS  398 (1363)
T ss_pred             cccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCcc
Confidence            88888999999999999999999976   5788999999999999987654333333221           111224688


Q ss_pred             ceeEEEecCCCCcHHHHHHHHhhC----C--CCee---------------ecCcCcccccccccccCCCCC---------
Q 013850          310 SLKLVGSGAAPLGKELMEDCQKNI----P--GATI---------------FQGYGMTETCAPISLENPLVG---------  359 (435)
Q Consensus       310 ~lr~i~~gG~~l~~~~~~~~~~~~----~--~~~~---------------~~~yG~tE~~~~~~~~~~~~~---------  359 (435)
                      ++|.+++.-..++.+..+....++    +  ++++               ..+-+.+|.+......+....         
T Consensus       399 slk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll  478 (1363)
T KOG3628|consen  399 SLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLL  478 (1363)
T ss_pred             ceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceee
Confidence            999999999888877665544433    2  1111               111222444433332222110         


Q ss_pred             -------------------CcCCCCcccccCC-cEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc
Q 013850          360 -------------------VRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW  418 (435)
Q Consensus       360 -------------------~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~  418 (435)
                                         ......+|...+| +.+.|+++++.+.|.++++|||||.++++..+  ||.-+..|...|
T Consensus       479 ~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~--~~al~~~t~~~F  555 (1363)
T KOG3628|consen  479 SKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKL--FYALDKQTENTF  555 (1363)
T ss_pred             eccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccc--eeeccccccceE
Confidence                               0111235666655 55567888999999999999999999999999  998888877766

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.38  E-value=1.3e-11  Score=116.81  Aligned_cols=146  Identities=16%  Similarity=0.079  Sum_probs=99.7

Q ss_pred             EEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEec--chHHHHHHHHHHHHhhhhcCcE-EEecC-
Q 013850          194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCV--LPMFHVFGLSVILYDQLQKGNC-VVSMG-  268 (435)
Q Consensus       194 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~--~~l~~~~g~~~~~~~~l~~G~~-i~~~~-  268 (435)
                      -..+..||||||.|-.+..+................... ..++++...  .+. +.+       ..+..... +-..+ 
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly-------~~~~~~~~~~~~~~l  172 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY-------QSVNNRWISLDFFDL  172 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH-------HHHHhccceeeecCC
Confidence            345667999999999999999877554333322222111 111333222  111 211       11111111 12221 


Q ss_pred             CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccccc
Q 013850          269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC  348 (435)
Q Consensus       269 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~  348 (435)
                      ..+.+.+++.|++++++++.++|+.+..|++.....+.+ ..+|.++++||.++++..+.+++.|+ +++++.||+|| +
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g  249 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-G  249 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-h
Confidence            146889999999999999999999999999876554434 47899999999999999999999997 99999999999 5


Q ss_pred             cc
Q 013850          349 AP  350 (435)
Q Consensus       349 ~~  350 (435)
                      .+
T Consensus       250 ~l  251 (430)
T TIGR02304       250 FL  251 (430)
T ss_pred             he
Confidence            43

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.93  E-value=1.1e-07  Score=88.15  Aligned_cols=202  Identities=19%  Similarity=0.185  Sum_probs=124.0

Q ss_pred             CCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc---cCCCcEEEecchHHH----HHHHHHHHHhhhhcC
Q 013850          189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV---GELDHVVLCVLPMFH----VFGLSVILYDQLQKG  261 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~---~~~~d~~l~~~~l~~----~~g~~~~~~~~l~~G  261 (435)
                      ..++++..++.||||||.|--+.+.+..+..+...+.......   ...+-.++...|...    +.......+..+..+
T Consensus        86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            3456778899999999998777777766666554443333211   111223333222211    111112233344456


Q ss_pred             cEEEec-CCCCHHHHHHHHH----hcCceEEEecHHHHHHHHhcccccCC--CCc-ceeEEEecC------CCCc-HHHH
Q 013850          262 NCVVSM-GKFDIEMALRAIE----KYRVTVWWVVPPIILALAKNSLVRKF--DIS-SLKLVGSGA------APLG-KELM  326 (435)
Q Consensus       262 ~~i~~~-~~~~~~~~~~~l~----~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~-~lr~i~~gG------~~l~-~~~~  326 (435)
                      ....+. ..++...+++.+.    +.++..+++.|.++..++......+.  .|+ ..+.+-.||      +.++ .++.
T Consensus       166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~  245 (365)
T PF04443_consen  166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY  245 (365)
T ss_pred             ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence            664443 2467777777664    45688999999877776665444433  333 355666665      4565 6888


Q ss_pred             HHHHhhCCC---CeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCC
Q 013850          327 EDCQKNIPG---ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN  400 (435)
Q Consensus       327 ~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~  400 (435)
                      +.+.+.|+-   ..+++.||+||......-. ..      +  ..++|.- +.|.||++.++++.|++|-|-+-++.
T Consensus       246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~-~~------~--~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~  312 (365)
T PF04443_consen  246 ARLQEVFGVIPIENIYDMYGMTELNSQAYEC-GH------G--HFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLA  312 (365)
T ss_pred             HHHHHHHCCCCHHHeeeeeeccccchhheeC-CC------C--cccCCCe-EEEECCCCCcCCCCCCeeEEEEEccc
Confidence            888888973   4899999999966543321 11      1  1133322 77779999999999999999888774

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.46  E-value=0.11  Score=51.56  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=26.3

Q ss_pred             CCCCCEEEEEeCCCCCC-CccceeeccHHHHH
Q 013850          189 VKQTDAAALLYSSGTTG-VSKGVILTHKNFIA  219 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtTG-~pK~v~~t~~~l~~  219 (435)
                      ..+..+.+...|||||| ++|.+..|+..+..
T Consensus        98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            45677788999999997 59999999998766

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=96.32  E-value=0.074  Score=53.11  Aligned_cols=30  Identities=23%  Similarity=0.240  Sum_probs=25.8

Q ss_pred             CCCCCEEEEEeCCCCC-CCccceeeccHHHH
Q 013850          189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFI  218 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~  218 (435)
                      ..++.+.+...||||| |.+|.++.|.+.+-
T Consensus        97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            5577888999999999 88999999996664

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.12  E-value=0.05  Score=51.45  Aligned_cols=87  Identities=15%  Similarity=0.066  Sum_probs=71.4

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v  130 (435)
                      .-+|+.|+...+..+|+.|...|..+||+|.++..-+  ..-+-..+|+.++|++++|+.+. .-+....++++.++.+|
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence            4689999999999999999999999999998887722  12266789999999999999884 34556678899999999


Q ss_pred             EEccccHHHH
Q 013850          131 ITVPELWDKV  140 (435)
Q Consensus       131 i~~~~~~~~~  140 (435)
                      .+.+...-.+
T Consensus       187 ~~tps~~l~l  196 (438)
T COG1541         187 AATPSYLLYL  196 (438)
T ss_pred             EEChHHHHHH
Confidence            9998755433

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=95.97  E-value=0.29  Score=48.70  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=26.5

Q ss_pred             CCCCCEEEEEeCCCCCC-CccceeeccHHHHHH
Q 013850          189 VKQTDAAALLYSSGTTG-VSKGVILTHKNFIAA  220 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtTG-~pK~v~~t~~~l~~~  220 (435)
                      ..+..+.+...|||||| .+|.+..|.+.+-..
T Consensus        86 lt~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~  118 (606)
T PLN02247         86 ISAQPITELLTSSGTSGGQPKLMPSTAEELDRK  118 (606)
T ss_pred             eCCCCcceeeccCCCCCCceeEeeccHHHHHHH
Confidence            44778889999999995 899999999876443

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=95.83  E-value=0.011  Score=58.48  Aligned_cols=32  Identities=25%  Similarity=0.192  Sum_probs=26.4

Q ss_pred             CCCCCCEEEEEeCCCCCCC-ccceeeccHHHHH
Q 013850          188 SVKQTDAAALLYSSGTTGV-SKGVILTHKNFIA  219 (435)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~-pK~v~~t~~~l~~  219 (435)
                      -..++.+.+...||||||. +|-++.|.+.+..
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            4567778899999999999 9999999998766

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=92.36  E-value=1.3  Score=42.88  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v  130 (435)
                      ..+|..++......++..+...|+++||++......+.  ......+++..+|+.+++++... .+.+...+++.++.++
T Consensus        93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            35688888877777888888889999999887665542  22334677889999999987664 4667788999999999


Q ss_pred             EEccccHHHH
Q 013850          131 ITVPELWDKV  140 (435)
Q Consensus       131 i~~~~~~~~~  140 (435)
                      +..+..+..+
T Consensus       172 ~~~Ps~l~~L  181 (422)
T TIGR02155       172 MVTPSYMLNL  181 (422)
T ss_pred             EEcHHHHHHH
Confidence            9998776554

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=91.96  E-value=1.7  Score=42.37  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCc--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v  130 (435)
                      ..+|..++...+...++.+...|+.+||++.++.+-+..  ....++++..+|++++|...   ......+++..++.++
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            457999999998888888888899999999998876542  23456788899998887643   2334567889999999


Q ss_pred             EEccccH
Q 013850          131 ITVPELW  137 (435)
Q Consensus       131 i~~~~~~  137 (435)
                      +..+...
T Consensus       181 ~~~ps~l  187 (445)
T TIGR03335       181 VASVFKL  187 (445)
T ss_pred             EECHHHH
Confidence            8876543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=87.94  E-value=4.4  Score=40.12  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--CcHHHHHHHHHHcCcEEEecC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTAN  110 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~  110 (435)
                      .++.++++...+|       ..+|+..+...+..+...+   +++++|++...++-.  ..+...+++++..|+.+++. 
T Consensus       164 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-  239 (513)
T PRK07656        164 DPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL---GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-  239 (513)
T ss_pred             CCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh---CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-
Confidence            4456666543323       4689998877666555443   788999998887754  33455678999999988775 


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEEccccHHHHhhc
Q 013850          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDL  143 (435)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  143 (435)
                      +..+.+.+...+++.++.+++..+..+..+...
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~  272 (513)
T PRK07656        240 PVFDPDEVFRLIETERITVLPGPPTMYNSLLQH  272 (513)
T ss_pred             CcCCHHHHHHHHHHhCCeEEechHHHHHHHHcC
Confidence            566788888999999999999988877766543

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=86.44  E-value=8.4  Score=38.58  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=70.9

Q ss_pred             cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--CcHHHHHHHHHHcCcEEEec
Q 013850           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTA  109 (435)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i  109 (435)
                      ..++.+|++...+|       ..+|++.+...+.....   ..++.++|++...+|-.  ..+...++..+..|++.+..
T Consensus       180 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~  256 (539)
T PRK06334        180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLK---FFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFA  256 (539)
T ss_pred             CCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEe
Confidence            35677787654433       46899888766544433   35778899988887742  33334467778889887765


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      ......+.+...+++.++.++...+..+..+.
T Consensus       257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  288 (539)
T PRK06334        257 YNPLYPKKIVEMIDEAKVTFLGSTPVFFDYIL  288 (539)
T ss_pred             cCCCCHHHHHHHHHHhCCcEEEecHHHHHHHH
Confidence            54567888889999999999999988776654

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=85.77  E-value=11  Score=37.41  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC-cHHHHHHHHHHcCcEEEecCCC
Q 013850           41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPV  112 (435)
Q Consensus        41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~-~~~~~~lA~~~~G~~~v~i~~~  112 (435)
                      ++.++++...+|       ..+|+..+...+.....   ..+++++|++....+-.. ..+...++++..|++.+..+..
T Consensus       166 ~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~  242 (521)
T PRK06187        166 ENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF  242 (521)
T ss_pred             ccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC
Confidence            355666544333       36799988876666655   448899999988877542 2233445588889988877664


Q ss_pred             CCHHHHHHHHHhcCCeEEEEccccHHHHhhc
Q 013850          113 YTVSELSKQVKDSNPKLVITVPELWDKVKDL  143 (435)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  143 (435)
                       +.+.+...+++.++.++++.+..+..+...
T Consensus       243 -~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~  272 (521)
T PRK06187        243 -DPENLLDLIETERVTFFFAVPTIWQMLLKA  272 (521)
T ss_pred             -CHHHHHHHHHHhCCeEEEchHHHHHHHHcC
Confidence             888899999999999999998877766544

>PRK08315 AMP-binding domain protein; Validated

Probab=84.72  E-value=9.3  Score=38.37  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             CCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--CCcHHHHHHHHHHcCcEEEecCC
Q 013850           41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN--SIHFPICFLGVIAIGAIASTANP  111 (435)
Q Consensus        41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~--~~~~~~~~lA~~~~G~~~v~i~~  111 (435)
                      ++.++++...+|       ..+|++.+...+..+...   .+++++|++....+-  ...++..+++.+..|+..+....
T Consensus       198 ~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  274 (559)
T PRK08315        198 PDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEA---MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE  274 (559)
T ss_pred             CCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHh---cCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC
Confidence            455555543323       467888887666655443   488999999887775  34455667888999988875556


Q ss_pred             CCCHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850          112 VYTVSELSKQVKDSNPKLVITVPELWDKV  140 (435)
Q Consensus       112 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~  140 (435)
                      ..+...+...+++.++.+++..+..+..+
T Consensus       275 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~~  303 (559)
T PRK08315        275 GFDPLATLAAVEEERCTALYGVPTMFIAE  303 (559)
T ss_pred             CCCHHHHHHHHHHcCCeEEecchHHHHHH
Confidence            66778888999999999999887765443

>PRK12583 acyl-CoA synthetase; Provisional

Probab=82.83  E-value=15  Score=36.75  Aligned_cols=85  Identities=20%  Similarity=0.266  Sum_probs=63.2

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--CCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN--SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~--~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v  130 (435)
                      ..+|+..+...+..+...   .+++++|++....+-  ....+..+++++..|+.++......+...+...+++.++.++
T Consensus       219 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l  295 (558)
T PRK12583        219 ATLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTAL  295 (558)
T ss_pred             EEeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEE
Confidence            468998887666655544   378899998877764  355667778889999988744455677788888999999999


Q ss_pred             EEccccHHHH
Q 013850          131 ITVPELWDKV  140 (435)
Q Consensus       131 i~~~~~~~~~  140 (435)
                      +..+..+..+
T Consensus       296 ~~~P~~~~~l  305 (558)
T PRK12583        296 YGVPTMFIAE  305 (558)
T ss_pred             eccHHHHHHH
Confidence            9887765433

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=82.33  E-value=9.7  Score=33.18  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=43.3

Q ss_pred             HhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCC
Q 013850           72 RHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP  127 (435)
Q Consensus        72 ~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~  127 (435)
                      ...|+.++|++. .+|-.-  .+...+++++..|++.+.+ +.++++++-..+++.++
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v  226 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV  226 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence            556889999999 888653  3445689999999998887 68899988888887765

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=81.28  E-value=14  Score=37.34  Aligned_cols=100  Identities=11%  Similarity=0.002  Sum_probs=70.2

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTAN  110 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~  110 (435)
                      .++.+|++...+|       ..+|+..+........   ...+++++|++....+...  .+...+++.+..|++.+...
T Consensus       203 ~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~  279 (570)
T PRK04319        203 DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGK---YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDG  279 (570)
T ss_pred             CCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHH---HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEEC
Confidence            3456666543323       4678888765443333   3457889998776665442  23455778889999888777


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      ...+.+.+...+++.++.+++..+..+..+..
T Consensus       280 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  311 (570)
T PRK04319        280 GRFSPERWYRILEDYKVTVWYTAPTAIRMLMG  311 (570)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHh
Confidence            67788999999999999999999887776643

>PLN03051 acyl-activating enzyme; Provisional

Probab=80.46  E-value=15  Score=36.27  Aligned_cols=99  Identities=15%  Similarity=0.021  Sum_probs=67.6

Q ss_pred             CCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCc-HHHHHHHHHHcCcEEEecCCC
Q 013850           41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPV  112 (435)
Q Consensus        41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~-~~~~~lA~~~~G~~~v~i~~~  112 (435)
                      ++.+|++.-.+|       ..+|+..+...+....   ...++.++|++...+|-... .+..+++++..|++.+..+..
T Consensus       118 ~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~  194 (499)
T PLN03051        118 VESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGW---AHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGA  194 (499)
T ss_pred             ccceEEEEeCCCCCCCCceEEEccchHHHHHHHHH---HhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCC
Confidence            456666543322       4678877655443322   34578899988776664421 234577888999998877654


Q ss_pred             CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          113 YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      ...+.+...+++.++.++...+..+..+..
T Consensus       195 ~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~  224 (499)
T PLN03051        195 PLGRGFGKFVQDAGVTVLGLVPSIVKAWRH  224 (499)
T ss_pred             CCcHHHHHHHHHhCCcEEEeCHHHHHHHHh
Confidence            566788899999999999998887766543

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=80.39  E-value=22  Score=33.75  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=73.5

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCc-HHHHHHHHHHcCcEEEecCC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANP  111 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~-~~~~~lA~~~~G~~~v~i~~  111 (435)
                      .++.++++...+|       ..+|++.+...+..+..   ..+++++|++....+.... .+..+++.+..|+..+..+.
T Consensus       118 ~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~  194 (408)
T TIGR01733       118 GPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPE  194 (408)
T ss_pred             CCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcCh
Confidence            3566677644333       46788888877776665   3467889999888776543 45567788888988877766


Q ss_pred             CCC--HHHHHHHHHhcCCeEEEEccccHHHHhhc
Q 013850          112 VYT--VSELSKQVKDSNPKLVITVPELWDKVKDL  143 (435)
Q Consensus       112 ~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  143 (435)
                      ...  ...+..++++.++..++..+.....+...
T Consensus       195 ~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~  228 (408)
T TIGR01733       195 DEERDAALLAALIAEHPVTVLNLTPSLLALLAAA  228 (408)
T ss_pred             hhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHh
Confidence            554  67888999999999999999888776543

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=80.23  E-value=11  Score=36.29  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC-cHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEE
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  131 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~-~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi  131 (435)
                      ..+|++.+...+..++..+   +++++|++....+-.. ..+..+++++..|+..+..++.   +.+...+++.++.++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL---GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc---CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEE
Confidence            4789999888777666544   7899999888877532 2233567888999988877543   3778889999999999


Q ss_pred             EccccHHHHhh
Q 013850          132 TVPELWDKVKD  142 (435)
Q Consensus       132 ~~~~~~~~~~~  142 (435)
                      ..+..+..+..
T Consensus       203 ~~P~~l~~l~~  213 (436)
T TIGR01923       203 LVPTQLNRLLD  213 (436)
T ss_pred             eHHHHHHHHHh
Confidence            98877765544

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	435
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-63
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		5e-58
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		6e-37
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-34
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-34
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-34
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-34
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-29
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-29
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-29
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		5e-24
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-24
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-24
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		3e-23
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-20
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-20
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-20
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		2e-19
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-16
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-16
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		8e-16
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-15
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		6e-14
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		4e-12
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-11
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		7e-11
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		7e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		8e-11
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-10
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-10
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		5e-10
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		5e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		5e-10
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		5e-10
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		5e-10
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-09
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-09
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		7e-09
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		9e-09
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		1e-08
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-07
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		6e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		1e-06
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		1e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		3e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		2e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 156/425 (36%), Positives = 238/425 (56%), Gaps = 30/425 (7%)
Query: 1   MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
           MEK  +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct: 35  MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 92
Query: 59  QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
               I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct: 93  DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152
Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
           +KQ K SN KL+IT     DK+K L N   V++   D                F +L + 
Sbjct: 153 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 209
Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
           +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE   
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 264
Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +
Sbjct: 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 324
Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
           VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE   
Sbjct: 325 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384
Query: 350 PISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            +++     + P     +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  G
Sbjct: 385 VLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442
Query: 405 IVYIN 409
             Y+N
Sbjct: 443 --YLN 445

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  221 bits (564), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 219/407 (53%), Gaps = 24/407 (5%)
Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P +    +  ++  N +++SSK  LI+  + +  +++  +    +V+  
Sbjct: 8   IFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASG 65
Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  KL+
Sbjct: 66  LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
           IT    ++KVKD          +                 F +L +      + P V + 
Sbjct: 126 ITQACYYEKVKDF-------ARESDVKVMCVDSAPDGCLHFSELTQ--ADENEAPQVDIS 176
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
             D  AL YSSGTTG+ KGV+LTHK  I   A  +   +  L    + V+LCVLPMFH++
Sbjct: 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIY 236
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
            L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  + K D+
Sbjct: 237 ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPISLENPLVGVRR 362
           SSL+++ SG APLGKEL +  +   P A + QGYGMTE       C   + E   +   +
Sbjct: 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDI---K 353
Query: 363 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            G+ GT+V   E +IV  +T   LP NQ GEI +RG  +  G  Y+N
Sbjct: 354 PGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG--YLN 398

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 196/410 (47%), Gaps = 34/410 (8%)
Query: 17  PPLV-LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
           PP   L    +   +H   +  A     +A  DA ++ ++++S++  +  +++ + +  G
Sbjct: 46  PPFYPLEDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYG 105
Query: 76  ITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
           +  +  + + + NS+ F  P+C  G + IG   +  N +Y   EL   +  S P +V   
Sbjct: 106 LGLQHHIAVCSENSLQFFMPVC--GALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCS 163
Query: 134 PELWDKVKDLN--LPA----VLLGSKDXXXXXXXXXXXXXXXXFHDLIE--LSGSVTD-- 183
                K+  +   LP     V+L S++                 +  IE  L     +  
Sbjct: 164 KRALQKILGVQKKLPIIQKIVILDSREDYMGKQS---------MYSFIESHLPAGFNEYD 214
Query: 184 -IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVL 239
            IPD   ++T  A ++ SSG+TG+ KGV LTHKN             + G     D  +L
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVR--FSHCRDPVFGNQIIPDTAIL 272
Query: 240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
            V+P  H FG+   L   L  G  +V M +F+ E+ LR+++ Y++    +VP +    AK
Sbjct: 273 TVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 331
Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG 359
           ++LV K+D+S+L  + SG APL KE+ E   K      I QGYG+TET + I +  P   
Sbjct: 332 STLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIII-TPRGR 390
Query: 360 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             + G+ G +V    A+IV +DT K L  NQ GE+ V+GP +  G  Y+N
Sbjct: 391 DDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG--YVN 438

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 189/391 (48%), Gaps = 20/391 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           APL KE+ E   K      I QGYG+TET + I L  P  G  + G+ G +V   EA++V
Sbjct: 317 APLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEAKVV 374
Query: 379 SVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 375 DLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 189/391 (48%), Gaps = 20/391 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           APL KE+ E   K      I QGYG+TET + I L  P  G  + G+ G +V   EA++V
Sbjct: 317 APLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEAKVV 374
Query: 379 SVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 375 DLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 189/391 (48%), Gaps = 20/391 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 29  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 88
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 89  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 205 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 262 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           APL KE+ E   K      I QGYG+TET + I L  P  G  + G+ G +V   EA++V
Sbjct: 322 APLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEAKVV 379
Query: 379 SVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 380 DLDTGKTLGVNQRGELCVRGPMIMSG--YVN 408

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 189/391 (48%), Gaps = 20/391 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 29  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSE 88
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN  Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 89  NSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+    A     A   + G     D  +L V+P  H FG+   L   L
Sbjct: 205 GSTGLPKGVALPHRAL--AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +   LAK++L+ K+D+S+L  + SG 
Sbjct: 262 ISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           APL KE+ E   K      I QGYG+TET + I L  P  G  + G+ G +V   EA++V
Sbjct: 322 APLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI-LITP-KGDDKPGAVGKVVPFFEAKVV 379
Query: 379 SVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 380 DLDTGKTLGVNQRGELSVRGPMIMSG--YVN 408

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 180/374 (48%), Gaps = 18/374 (4%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
                  F       G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 395
             + QGYG+TET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+ 
Sbjct: 338 --VRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVC 393
Query: 396 VRGPNVTPGIVYIN 409
           V+GP +  G  Y+N
Sbjct: 394 VKGPMLMKG--YVN 405

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 180/374 (48%), Gaps = 18/374 (4%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
                  F       G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 395
             + QGYG+TET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+ 
Sbjct: 338 --VRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVC 393
Query: 396 VRGPNVTPGIVYIN 409
           V+GP +  G  Y+N
Sbjct: 394 VKGPMLMKG--YVN 405

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 180/374 (48%), Gaps = 18/374 (4%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
                  F       G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F
Sbjct: 162 GYQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 395
             + QGYG+TET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+ 
Sbjct: 338 --VRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVC 393
Query: 396 VRGPNVTPGIVYIN 409
           V+GP +  G  Y+N
Sbjct: 394 VKGPMLMKG--YVN 405

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 159/370 (42%), Gaps = 35/370 (9%)
Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           KLA+  A  D+ +S+++  +   +V++     G+   D V      S+   + +L  +  
Sbjct: 18  KLAIETAAGDK-ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRA 76
Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXX 162
           G +    N  YT+ EL   + D+ PK+V+  P   D +  +   A  +G+          
Sbjct: 77  GGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI---AAKVGATVETLGP--- 130
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                        +  GS+TD           +     D AA+LY+SGTTG SKG  L+H
Sbjct: 131 -------------DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L      + + KFD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDK 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L      R TV   VP     L ++  + K      +L  SG+APL  +   +      
Sbjct: 236 ILDLXA--RATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKT- 292
Query: 335 GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 394
           G  + + YG TET    S  NP  G R  G+ G  + GV A++   +T K LP   +G I
Sbjct: 293 GHAVLERYGXTETNXNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXI 350
Query: 395 WVRGPNVTPG 404
            V+GPNV  G
Sbjct: 351 EVKGPNVFKG 360

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 33/347 (9%)
Query: 30  VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           + ++ R  A+ S +L A ++  +D  ++++Q  ++  + +     LGI K D V +  PN
Sbjct: 18  IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+ F   F G   +GA+A   N      E+S  + DS  K+VI                 
Sbjct: 78  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 120
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
             G+                    D I        L  +  D P V     D   ++Y+S
Sbjct: 121 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 179
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++  + +G
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 236
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++SM +FD       I + RV +   VP I+  + +     + D    +   +G AP+
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 296
Query: 322 GKELME-DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAG 367
            + L++    KNI    + QGY +TE+C   +L      +R++GSAG
Sbjct: 297 PEALIKIYAAKNI---EVVQGYALTESCGGGTLLLSEDALRKAGSAG 340

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 33/347 (9%)
Query: 30  VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           + ++ R  A+ S +L A ++  +D  ++++Q  ++  + +     LGI K D V +  PN
Sbjct: 4   IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 63
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+ F   F G   +GA+A   N      E+S  + DS  K+VI                 
Sbjct: 64  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 106
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
             G+                    D I        L  +  D P V     D   ++Y+S
Sbjct: 107 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 165
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++  + +G
Sbjct: 166 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 222
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++SM +FD       I + RV +   VP I+  + +     + D    +   +G AP+
Sbjct: 223 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 282
Query: 322 GKELME-DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAG 367
            + L++    KNI    + QGY +TE+C   +L      +R++GSAG
Sbjct: 283 PEALIKIYAAKNI---EVVQGYALTESCGGGTLLLSEDALRKAGSAG 326

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 172/399 (43%), Gaps = 38/399 (9%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITK 78
           P  S+   +   +  +  K A+I A+        ES +F +   +  K++      G+ K
Sbjct: 17  PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRK 76
Query: 79  KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD 138
            + V +  PNSI +      +  + A     NP Y   EL   + DS    ++    L++
Sbjct: 77  GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 139 KVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL--SGSVTDIPDVSVK-QTDAA 195
                N   VL                      + L E+  SGS  D  +V V  + D A
Sbjct: 137 -----NFKPVL-------EKTGVERVFVVGGEVNSLSEVXDSGS-EDFENVKVNPEEDVA 183
Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV--FGLSVI 253
            + Y+ GTTG  KGV LTH N  A +L ++    L    D +V C  P FH   FGL  +
Sbjct: 184 LIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGL-SHXDTIVGCX-PXFHSAEFGLVNL 241
Query: 254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
               +  GN  V  G F+ E     IEKY+ T  W VPP +  L     S  + +D S L
Sbjct: 242 ---XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYL 298
Query: 312 KLVGSGAAPLGKELMEDCQK------NIPGATIFQGYGMTETCAPISLENPLVGVRRSGS 365
           K+  +GA P+   L+E   K      N P     Q +G TE C P    NP + + +S +
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEAC-PXVTTNPPLRLDKSTT 357
Query: 366 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            G   + +E +++S++  + L   + GEI +RGPN+  G
Sbjct: 358 QGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 42/370 (11%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L  +   R TV   VP     L ++  +       ++L  SG+APL  +   +      
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT- 292
Query: 335 GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 394
           G  + + YGMTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +G I
Sbjct: 293 GHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMI 350
Query: 395 WVRGPNVTPG 404
            V GPNV  G
Sbjct: 351 EVXGPNVFXG 360

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 42/370 (11%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L  +   R TV   VP     L ++  +       ++L  SG+APL  +   +      
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT- 292
Query: 335 GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 394
           G  + + YGMTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +G I
Sbjct: 293 GHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMI 350
Query: 395 WVRGPNVTPG 404
            V GPNV  G
Sbjct: 351 EVXGPNVFXG 360

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 42/370 (11%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L  +   R TV   VP     L ++  +       ++L  SG+APL  +   +      
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT- 292
Query: 335 GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 394
           G  + + YGMTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +G I
Sbjct: 293 GHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMI 350
Query: 395 WVRGPNVTPG 404
            V GPNV  G
Sbjct: 351 EVXGPNVFXG 360

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 180/390 (46%), Gaps = 35/390 (8%)
Query: 27  FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
            S+  +L++ +      +A+ D    ES ++   +++  + S   + L   ++  V ++ 
Sbjct: 1   MSLDFWLYKQAQQNGHHIAITDGQ--ESYTY---QNLYCEASLLAKRLKAYQQSRVGLYI 55
Query: 87  PNSIHFPI----CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-TVPELWDKVK 141
            NSI   I    C+L  I I  I +   P    +E++ Q++  + +L+  T+P      +
Sbjct: 56  DNSIQSIILIHACWLANIEIAMINTRLTP----NEMTNQMRSIDVQLIFCTLPLELRGFQ 111
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXX-XXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYS 200
            ++L  +    +D                  ++ +    S ++I + S    D A+++++
Sbjct: 112 IVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFT 171
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
           SGTTG  K V  T +N  A++  I   + L  + D   L VLP++H+ GLSV+L   ++ 
Sbjct: 172 SGTTGPQKAVPQTFRNHYASA--IGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIE- 228
Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
           G  V  + KF+ E  L  I+  R+T   +VP  +  L +  L   +++  + L   G A 
Sbjct: 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILL---GGAK 285
Query: 321 LGKELMEDC-QKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS 379
           L   ++E   Q N+P   I+  +GMTETC+      P +   R  + G   A V+ +I +
Sbjct: 286 LSATMIETALQYNLP---IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN 342
Query: 380 VDTLKPLPPNQ--LGEIWVRGPNVTPGIVY 407
                   PN+   GE+ ++G NV  G +Y
Sbjct: 343 --------PNKEGHGELMIKGANVMNGYLY 364

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 171/401 (42%), Gaps = 17/401 (4%)
Query: 13  RSLRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           ++  PP      P   F+   +LFR + + + K A ID     S ++ + +    + + +
Sbjct: 7   KAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTG--STTYGELEERARRFASA 64
Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
            R LG+  ++ +L+   +++  P+ FLG +  G +   AN + T ++    +  S+ + V
Sbjct: 65  LRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
           I    L   V      A   G +                 F +LI+ +            
Sbjct: 125 IASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCD 183
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             D A  LYSSG+TG  KG + TH N    + + +     + E D VV     +F  +GL
Sbjct: 184 --DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGL 240
Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRA-IEKYRVTVWWVVPPIIL-ALAKNSLVRKFDI 308
              L   L  G   + M +     A+ A + ++R TV++ VP +    L   +L  + D+
Sbjct: 241 GNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV 300
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGT 368
            ++++  S    L +E+ E    +  G  I  G G TE    I L N   G    G+ G 
Sbjct: 301 -AIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLH-IFLSN-RAGAVEYGTTGR 356
Query: 369 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            V G E ++   +    +P  ++G+++++GP+    ++Y N
Sbjct: 357 PVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSA--AVMYWN 394

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 45/301 (14%)
Query: 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 169
           NP     EL+  + DS P LV+  P       D  LP  L G+ +               
Sbjct: 99  NPKSGDKELAHILSDSAPSLVLAPP-------DAELPPAL-GALERVDVD---------- 140
Query: 170 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 229
                +   G+V   P+      D A ++Y+SGTTG  KG ++  +        ++   +
Sbjct: 141 -----VRARGAV---PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
             GE   V++  LP+FHV GL + +   L++G  V  +G+F  E A R +     T+ + 
Sbjct: 193 WTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFG 249
Query: 290 VPPIILALAKN-----SLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGY 342
           VP +   +A+       L +    + L + GS A P+      D ++     G  + + Y
Sbjct: 250 VPTMYHRIAETLPADPELAKALAGARLLVSGSAALPV-----HDHERIAAATGRRVIERY 304
Query: 343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD--TLKPLPPNQLGEIWVRGPN 400
           GMTET    S+     G  R+G+ G  + GVE ++V  D   +  L    +GEI VRGPN
Sbjct: 305 GMTETLMNTSVR--ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPN 362
Query: 401 V 401
           +
Sbjct: 363 L 363

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 175/407 (42%), Gaps = 33/407 (8%)
Query: 27  FSMVHFLFRNSASYSSKLA-LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
           F++     RN+A +  + A ++D      L+   + +   +++      G+   D V I 
Sbjct: 6   FTLADVYRRNAALFPDRTAFMVDG---VRLTHRDYLARAERLASGLLRDGVHTGDRVAIL 62
Query: 86  APNSIHFPICFLGVIA-IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
           + N     I  +G +A IGAI    N      E++  + D  P +V+   +  D V  + 
Sbjct: 63  SQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV- 120
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
           LP+ L G K                 F DL     S T          D   +++++   
Sbjct: 121 LPS-LGGVK---KAYAIGDGSGPFAPFKDL----ASDTPFSAPEFGAADGFVIIHTAAVG 172
Query: 205 GVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           G  +G +++  N  IA S ++ A +  + E D V L +LP+FHV GL ++L  Q Q G  
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWR--LTEAD-VNLGMLPLFHVTGLGLMLTLQ-QAGGA 228
Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
            V   KFD   A R IE ++VTV     P++  +   +   +  ++SL+ V     P   
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLRAVTGLDTP--- 283
Query: 324 ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 383
           E +E  +   P AT +  +G +ET   +S   P     R  SAG  +      +V  +  
Sbjct: 284 ETIERFEATCPNATFWATFGQSETSG-LSTFAPYR--DRPKSAGRPLFWRTVAVVDAED- 339
Query: 384 KPLPPNQLGEIWVRGPNVTPGIVYINFFVFT--LFLWGCEHTDSFIR 428
           +PLPP ++GEI +RGP V  G  Y N    T   F  G  HT    R
Sbjct: 340 RPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAFRNGWHHTGDMGR 384

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 164/381 (43%), Gaps = 27/381 (7%)
Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y  ++A+   ++    S+ +  +   +++  F+ LGI +KD V++  PN   
Sbjct: 30  LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F      +  +GA+   A P +  SE++   + +     I +P   D     +  ++   
Sbjct: 88  FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQ 143
Query: 152 SKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            +                 F  L +L      +P+V  K +D A L  S G+TG+SK + 
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIP 201
Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++I  SL  S     V  LDH  V L  LPM H + LS      +LY     G  V
Sbjct: 202 RTHDDYIY-SLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY----AGGRV 253
Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V       + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAE 313
Query: 325 LMEDCQKNIPGATIFQGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 383
                 K + G T+ Q +GM E     + L++P   +    + G  ++  +   V  D  
Sbjct: 314 AARRV-KAVFGCTLQQVFGMAEGLVNYTRLDDPEEII--VNTQGKPMSPYDESRVWDDHD 370
Query: 384 KPLPPNQLGEIWVRGPNVTPG 404
           + + P + G +  RGP    G
Sbjct: 371 RDVKPGETGHLLTRGPYTIRG 391

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 29/396 (7%)
Query: 24  DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLGITKKDV 81
           D   ++  FL R +A +  K  +    + E    ++++      ++    R LG+   D 
Sbjct: 15  DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 74
Query: 82  VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141
           V     N       +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+
Sbjct: 75  VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
            +         +                 +    E  G   D   V V +  A  + Y++
Sbjct: 135 AIR-------GELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--PVRVPERAACGMAYTT 185
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV    +     L   
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK--LVGSGAA 319
             V+   + D    +   +   VT    VP + LALA         + +L+  +VG  AA
Sbjct: 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 305
Query: 320 PLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAG---TLVAGVEAQ 376
           P  + L+   ++   G  + QGYG+TET +P+ ++N +     S S     TL A     
Sbjct: 306 P--RSLIARFERM--GVEVRQGYGLTET-SPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 360
Query: 377 I------VSVDTLKPLPPN--QLGEIWVRGPNVTPG 404
           I      V+ +  +P+P +   LGE+ ++GP +T G
Sbjct: 361 IPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 396

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 160/381 (41%), Gaps = 27/381 (7%)
Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y  ++A+   ++    S+ +  +   +++  F+ LGI +KD V++  PN   
Sbjct: 30  LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F      +  +GA+   A P +  SE++   + +     I +P   D     +  ++   
Sbjct: 88  FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQ 143
Query: 152 SKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            +                 F  L +L      +P+V  K +D A L  S G+TG+SK + 
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIP 201
Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++I  SL  S     V  LDH  V L  LP  H + LS      +LY     G  V
Sbjct: 202 RTHDDYI-YSLKRSVE---VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLY----AGGRV 253
Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V       + A   IE+ +VT+  +VPP+       +  R+ D+SSL+++  G A    E
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAE 313
Query: 325 LMEDCQKNIPGATIFQGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 383
                 K + G T+ Q +G  E     + L++P   +    + G   +  +   V  D  
Sbjct: 314 AARRV-KAVFGCTLQQVFGXAEGLVNYTRLDDPEEII--VNTQGKPXSPYDESRVWDDHD 370
Query: 384 KPLPPNQLGEIWVRGPNVTPG 404
           + + P + G +  RGP    G
Sbjct: 371 RDVKPGETGHLLTRGPYTIRG 391

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 23/310 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +  GYG TE   
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMN 311
Query: 350 PISLENPLVG 359
            + +  P  G
Sbjct: 312 SLYMRQPKTG 321

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 174/446 (39%), Gaps = 67/446 (15%)
Query: 26  SFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV 82
           ++ +V    R+S     KLA+I   D  +++  +F   K    K ++ F   GI K D V
Sbjct: 58  AYDVVDVYARDSPE---KLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYV 114
Query: 83  LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142
           ++   +   F  C LG+  +GAIA  A  +    ++  +++ +  K+++ + E  D  + 
Sbjct: 115 MLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED-DVPEQ 173
Query: 143 LNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP--DVSVKQTDAAALLYS 200
           ++      G                   F   +E S  + + P  +VS K  D   + +S
Sbjct: 174 VDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFS 233
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVL-------CVLPMFH---VF 248
           SGT G  K  ++ H N      +++A   Q +  +  H  +       CV    +   + 
Sbjct: 234 SGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA 291
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
           G +V +YD            +F+ +  L    KY VT +   P I   L K  L   ++ 
Sbjct: 292 GCAVFVYD----------YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSH-YNF 340
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC-----------APISLENPL 357
           S+LK       PL  E+     +   G  + +G+G TET             P S+  P 
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPT 399
Query: 358 VGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLP----------PNQLGEIWVRGPNVT 402
            G +     R G    +  G E +IV ++T++  P          P +  E W  G   T
Sbjct: 400 PGYKIELMDRDGRLCEV--GEEGEIV-INTMEGKPVGLFVHYGKDPERTEETWHDGYYHT 456
Query: 403 PGIVYINFFVFTLFLWGCEHTDSFIR 428
             + +++      +LW     D  I+
Sbjct: 457 GDMAWMD---EDGYLWFVGRADDIIK 479

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 23/310 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE   
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMN 311
Query: 350 PISLENPLVG 359
            + +  P  G
Sbjct: 312 SLYMRQPKTG 321

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 23/310 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE   
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMN 311
Query: 350 PISLENPLVG 359
            + +  P  G
Sbjct: 312 SLYMRQPKTG 321

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 23/310 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE   
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMN 311
Query: 350 PISLENPLVG 359
            + +  P  G
Sbjct: 312 SLYMRQPKTG 321

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 23/310 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +   YG TE   
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMN 311
Query: 350 PISLENPLVG 359
            + +  P  G
Sbjct: 312 SLYMRQPKTG 321

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 145/381 (38%), Gaps = 47/381 (12%)
Query: 39  SYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98
           S+   LA+I  +    LS+ +   +   ++      G+ K D  L+  PN   F I F  
Sbjct: 42  SHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99
Query: 99  VIAIGAIASTANPVYTVSELSKQVKDSNPKLVI--------TVPELWDKVKDLNL-PAVL 149
           ++  G +   A   +   EL+  +K   PKL+I        +  +  D + D+NL P ++
Sbjct: 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEII 159
Query: 150 LGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVSK 208
           L                      D IE         D S    D  A    S G+TG  K
Sbjct: 160 L----------MLNHQATDFGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPK 207
Query: 209 GVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVS 266
            +  TH ++      + A  E+ G   +  +LC LP  H F LS       L  G CVV 
Sbjct: 208 LIPRTHNDY---DYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264
Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
               +       I++++V +  +VP  ++   + +   K  I SLKL+  G A   + L 
Sbjct: 265 APNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLA 324
Query: 327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----- 381
               + +    + Q +GM E          LV   R   +   +   + + +S D     
Sbjct: 325 RQVPE-VLNCKLQQVFGMAEG---------LVNYTRLDDSDEQIFTTQGRPISSDDEIKI 374
Query: 382 ---TLKPLPPNQLGEIWVRGP 399
                + +P  ++G +  RGP
Sbjct: 375 VDEQYREVPEGEIGMLATRGP 395

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 122/310 (39%), Gaps = 23/310 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K                 +     AV+   +                   DL
Sbjct: 90  SAELAELIK-----------------RGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L  S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL + P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCA 349
             + ALA  +        + SL+ V    A     ++E   +++PG  +   YG TE   
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXN 311
Query: 350 PISLENPLVG 359
            +    P  G
Sbjct: 312 SLYXRQPKTG 321

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 28/354 (7%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++  + DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 378
           E   K I      +   +  TET   +    P     ++GSA     GV+  +V
Sbjct: 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 144/360 (40%), Gaps = 35/360 (9%)
Query: 54  SLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           S+++ +    V +V+    + +G+ K D V ++ P      I  L +  IGAI S     
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 172
Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV----LLGSKDXXXXXXXXXXXXXX 168
           ++ + L  ++ D + K+VIT  E     K +    +    L  +                
Sbjct: 173 FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 232
Query: 169 XXFHDLIELSGSV------TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
             FH   +L  +       T  P   V   D   LLY+SG+TG  KGV  +   ++  +L
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 223 M-----ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIE 273
           +        HQE       V      +  + G + ++Y  L  G   +    +    +  
Sbjct: 293 LTMRYTFDTHQE------DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS 346
Query: 274 MALRAIEKYRVTVWWVVPPI--ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
                I++++VT ++V P    +L  A +S +    + SL+ +GS   P+  E+ E   +
Sbjct: 347 RYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSE 406
Query: 332 NIPGAT--IFQGYGMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPL 386
            I      I   Y  TE+ +   L  PL G     + GSA     G++A ++  +T + L
Sbjct: 407 KIGKNEIPIVDTYWQTESGS--HLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 154/411 (37%), Gaps = 82/411 (19%)
Query: 46  LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD-VVLIFAPNSIHFPI--CFLGVIAI 102
            ++ + +E+ ++ Q       ++ + +  G    D V+L+FAP     P+   FLG +  
Sbjct: 32  FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG---LPLIQAFLGCLYA 88
Query: 103 GAIASTANPVYTVSELSKQ---VKDSNPKLVI---------TVPELWDKVKDLNLPAVLL 150
           G IA    P      L K    V +S P +V+         T  EL    K L +PA+ L
Sbjct: 89  GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIAL 148
Query: 151 GSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
            S                      IEL+ S +  P  S+K  D A L Y+SG+T   KGV
Sbjct: 149 ES----------------------IELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGV 185
Query: 211 ILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
            ++H N +     +  S H       + ++   LP  H  GL   +   +  G   +   
Sbjct: 186 XVSHHNLLDNLNKIFTSFHX----NDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXS 241
Query: 269 KFDIEMA----LRAIEKYRVTVWW---VVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            F         L+ I KY+ T+           +   +       D+SS     +GA P+
Sbjct: 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPV 301
Query: 322 GKELMEDCQK-----NIPGATIFQGYGMTE-----------------TCAPISLENPLVG 359
            +E  E   +            +  YG+ E                 T A    ++  V 
Sbjct: 302 REETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVH 361
Query: 360 VRRSGSAGT--LVAG----VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
                S G+  LV+      E +I+  DTL P   +Q+GEIWV+  +V  G
Sbjct: 362 FADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKG 412

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 155/395 (39%), Gaps = 55/395 (13%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P+ + VH LF   A+ +     +  ++DE L++        +++H    LG+    +V +
Sbjct: 72  PAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHRLVGLGVAPGTLVGV 130
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                    +  L V+  G   +  +P + V  L+  ++D+   L++T   L  ++    
Sbjct: 131 HLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTT 190
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD----VSVKQTDAAALLYS 200
                                        L     + +D P       V   D A ++++
Sbjct: 191 T----------------------------LYVEDEAASDAPAGNLATGVGPEDVACVMFT 222
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQL 258
           SG+TG  KGV+  H+      L     Q+  G   D V L   P+ +  FGL   L+  L
Sbjct: 223 SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLE--LFGAL 276
Query: 259 QKG-NCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLV 314
             G  CV+  G+    + +   + ++ VT+  +   +      N LV +       ++  
Sbjct: 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLF-----NFLVDEVPEAFEGVRYA 331
Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA---GTLVA 371
            +G  P     +   +++ P   +  GYG  E+    +  + +V    SG+A   G  +A
Sbjct: 332 ITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG-FTTHHAVVAGDLSGTALPIGVPLA 390
Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 406
           G  A ++  D LKP     LGE++V G  +  G V
Sbjct: 391 GKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 155/395 (39%), Gaps = 55/395 (13%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P+ + VH LF   A+ +     +  ++DE L++        +++H    LG+    +V +
Sbjct: 72  PAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHRLVGLGVAPGTLVGV 130
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                    +  L V+  G   +  +P + V  L+  ++D+   L++T   L  ++    
Sbjct: 131 HLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTT 190
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD----VSVKQTDAAALLYS 200
                                        L     + +D P       V   D A ++++
Sbjct: 191 T----------------------------LYVEDEAASDAPAGNLATGVGPEDVACVMFT 222
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQL 258
           SG+TG  KGV+  H+      L     Q+  G   D V L   P+ +  FGL   L+  L
Sbjct: 223 SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLE--LFGAL 276
Query: 259 QKG-NCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLV 314
             G  CV+  G+    + +   + ++ VT+  +   +      N LV +       ++  
Sbjct: 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLF-----NFLVDEVPEAFEGVRYA 331
Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA---GTLVA 371
            +G  P     +   +++ P   +  GYG  E+    +  + +V    SG+A   G  +A
Sbjct: 332 ITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG-FTTHHAVVAGDLSGTALPIGVPLA 390
Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 406
           G  A ++  D LKP     LGE++V G  +  G V
Sbjct: 391 GKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 186 DVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
           DV++++    D A L Y+SG+T   +GVI+TH+  + A+L   +H  +        +  L
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE-VXANLRAISHDGIKLRPGDRCVSWL 224
Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA 298
           P +H  GL   L   +     V  +   D        L+ I K R TV  V PP    L 
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYELC 283
Query: 299 KNSLVRK----FDISSLKLVGSGAAPLGKELME---DC--QKNIPGATIFQGYGMTETCA 349
           +  +  K     D+S  ++ G GA P+  E +    +C  Q N    T    YG+ E   
Sbjct: 284 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENAL 343
Query: 350 PISLENPLVGV 360
            +S  +   GV
Sbjct: 344 AVSFSDEASGV 354

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 20/166 (12%)
Query: 51  SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
           S ++LS+ +      +++   +  G  K  VV ++   S+   I  LGV+  GA     +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXX 170
           P      +S  + DS    ++T  E+ ++  +L      L                    
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------------------F 586
Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 216
             D        +D P  ++   D A ++Y+SGTTG  KG I TH N
Sbjct: 587 IDDQTRFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 143/392 (36%), Gaps = 51/392 (13%)
Query: 29  MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           +   L R++AS S  +A+ID +    LS+ +       ++ S R  GI   +  L+   N
Sbjct: 29  LTDILTRHAASDS--IAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGN 84
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
                I F  ++ +G     A   +  SEL+       P L+I      D+   L     
Sbjct: 85  VAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIA-----DRQHALFSGDD 139
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLIE-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
            L +                   H+L + ++    D         + A    S GTTG  
Sbjct: 140 FLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTP 199
Query: 208 KGVILTHKNF---IAASLMISAHQELVGELDHVVLCVLPMFHVFGLS------VILYDQL 258
           K +  TH ++   +  S+ I    +         LC +P  H + +S      V L    
Sbjct: 200 KLIPRTHNDYYYSVRRSVEICQFTQQTR-----YLCAIPAAHNYAMSSPGSLGVFL---- 250
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR---KFDISSLKLVG 315
             G  VV        +    IEK++V V  +VPP + +L   +L+    +  ++SLKL+ 
Sbjct: 251 -AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-SLWLQALIEGESRAQLASLKLLQ 308
Query: 316 SGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 375
            G A L   L       I G  + Q +GM E          LV   R   +   +   + 
Sbjct: 309 VGGARLSATLAARIPAEI-GCQLQQVFGMAEG---------LVNYTRLDDSAEKIIHTQG 358
Query: 376 QIVSVDTL--------KPLPPNQLGEIWVRGP 399
             +  D           PLP  ++G +  RGP
Sbjct: 359 YPMCPDDEVWVADAEGNPLPQGEVGRLMTRGP 390

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 20/236 (8%)
Query: 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
           GSV+   D  VK+ +   ++Y+SG+TG  KGV ++  N  + +  I A   + G    + 
Sbjct: 132 GSVSQ--DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIF 187
Query: 239 LCVLPMFHVFGLSVI-LYDQLQKG---NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           L   P    F LSV+ LY  LQ G   +CV        ++    ++K  + VW   P  +
Sbjct: 188 LNQAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFV 245
Query: 295 -LALAKNSLVRKFDISSLKLVGSGA---APLGKELMEDCQKNIPGATIFQGYGMTE-TCA 349
            + L      +     +   +  G      + K L+E      P A IF  YG TE T A
Sbjct: 246 QMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE----RFPKAKIFNTYGPTEATVA 301
Query: 350 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPG 404
             S+E     + RS S     A  +  I  +D   +PLP  + GEI + GP+V+ G
Sbjct: 302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 131/336 (38%), Gaps = 50/336 (14%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P    +H LF    S       I  + +E L++ +      +++  F   GI K  +V I
Sbjct: 36  PRDKTIHQLFEEQVSKRPNNVAIVCE-NEQLTYHELNVKANQLARIFIEKGIGKDTLVGI 94
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
               SI   I  L V+  G      +  Y    +   + DS  ++++T   L   + ++ 
Sbjct: 95  MMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 154
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGT 203
               +   ++                  D I++  G+   +P    K TD A ++Y+SGT
Sbjct: 155 FNGQVEIFEE------------------DTIKIREGTNLHVPS---KSTDLAYVIYTSGT 193
Query: 204 TGVSKGVILTHKN------FIAASLMISAHQELVGELDHVVL--CVLPMFHVFGLSVILY 255
           TG  KG +L HK       F   SL ++  ++ +G+   +     V  MF        LY
Sbjct: 194 TGNPKGTMLEHKGISNLKVFFENSLNVT-EKDRIGQFASISFDASVWEMFMALLTGASLY 252
Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             L+  + +    KF+     + I +  +TV  + P  ++ L      R   I +L   G
Sbjct: 253 IILK--DTINDFVKFE-----QYINQKEITVITLPPTYVVHLDPE---RILSIQTLITAG 302
Query: 316 SGAAPLGKELMEDCQKNIPGATIFQGYGMTET--CA 349
           S  +P    L+   ++ +   T    YG TET  CA
Sbjct: 303 SATSP---SLVNKWKEKV---TYINAYGPTETTICA 332

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 150/394 (38%), Gaps = 65/394 (16%)
Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           LFR  A+ + +   + A+ D+ +S+ +  +    V+ +    G+   D V +        
Sbjct: 40  LFREVAATAPERTALSAE-DDRISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEA 98
Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGS 152
            +  L ++  GA     +    VS     + DS    +I  P     V  +   A +   
Sbjct: 99  IVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAVAEC 158
Query: 153 KDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL 212
           KD                        G VT  P    +  D A ++Y+SGTTG  KGV +
Sbjct: 159 KDAE---------------------PGPVTGAPGPGAE--DMAYVIYTSGTTGNPKGVPV 195
Query: 213 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHV--FGLSVI-LYDQLQKGNCVVSMGK 269
            H N +A  L+  A        D   L    +FH   F  SV  ++     G  +V +  
Sbjct: 196 RHANVLA--LLAGAPSVFDFSGDDRWL----LFHSLSFDFSVWEIWGAFSTGAELVVLPH 249
Query: 270 FDIEMALRAIEKY-------RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
           +    A R  E+Y        VTV    P   LAL + ++    D+S L+ V  G   L 
Sbjct: 250 W----AARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLT 305
Query: 323 KELMEDCQK--NIPGATIFQGYGMTE----------TCAPISLENPLVGVRRSGSAGTLV 370
             ++    K   +    +  GYG+TE          T A ++ +  ++G R   S GT V
Sbjct: 306 APMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIG-RALPSFGTRV 364
Query: 371 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            G + + V+        P + GE+W+ G  +  G
Sbjct: 365 VGDDGRDVA--------PGETGELWLSGAQLAEG 390

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-159
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-158
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-151
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-150
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-142
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-104
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-99
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-98
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-97
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	8e-93
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-89
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-86
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-81
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-80
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-80
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	9e-59
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-49
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-47
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-46
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-44
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-40
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-32
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-17
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-16
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-16
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-16
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-15
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	7e-14
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-12
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	4e-12
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	5e-09
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-09
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-09
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  460 bits (1186), Expect = e-159
 Identities = 139/411 (33%), Positives = 221/411 (53%), Gaps = 28/411 (6%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           + I+RS  P + +P +    +  ++  N +++SSK  LI+  + +  +++  +    +V+
Sbjct: 6   EFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  K
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 129 LVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           L+IT    ++KVKD     ++  + + S                + F +L +   +  + 
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSA-----------PDGCLHFSELTQADEN--EA 170

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVL 242
           P V +   D  AL YSSGTTG+ KGV+LTHK  I +                + V+LCVL
Sbjct: 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL 230

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           PMFH++ L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  
Sbjct: 231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD 290

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG--- 359
           + K D+SSL+++ SG APLGKEL +  +   P A + QGYGMTE   P+           
Sbjct: 291 LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG-PVLAMCLAFAKEP 349

Query: 360 -VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
              + G+ GT+V   E +IV  +T   LP NQ GEI +RG  +  G  Y+N
Sbjct: 350 FDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG--YLN 398

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  470 bits (1212), Expect = e-158
 Identities = 148/419 (35%), Positives = 230/419 (54%), Gaps = 22/419 (5%)

Query: 2   EKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
           + +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S   
Sbjct: 38  QSNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVH 95

Query: 62  SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
            I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E++KQ
Sbjct: 96  VISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155

Query: 122 VKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
            K SN KL+IT     DK+K L     +  V +   + V            + F +L + 
Sbjct: 156 AKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP------EGCLRFTELTQS 209

Query: 178 SGSVTD-IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA--HQELVGEL 234
           +   ++ I  V +   D  AL YSSGTTG+ KGV+LTHK  + +        +  L    
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 354
           LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + QGYGMTE   P+   
Sbjct: 330 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG-PVLAM 388

Query: 355 NPLVG----VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           +          +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  G  Y+N
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG--YLN 445

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  439 bits (1132), Expect = e-151
 Identities = 110/415 (26%), Positives = 191/415 (46%), Gaps = 18/415 (4%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           ME +      I +   P   L    +   +H   +  A     +A  DA  + +++++++
Sbjct: 1   MEDA----KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY 56

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
             + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y   EL  
Sbjct: 57  FEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLN 116

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE---- 176
            +  S P +V    +   K+ ++      L    K+      +      S +  +     
Sbjct: 117 SMNISQPTVVFVSKKGLQKILNV---QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 173

Query: 177 -LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL- 234
                   +P+   +    A ++ SSG+TG+ KGV L H+                  + 
Sbjct: 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 233

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++    +VP + 
Sbjct: 234 DTAILSVVPFHHGFGMFTTLG-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLE 354
              AK++L+ K+D+S+L  + SG APL KE+ E   K      I QGYG+TET     L 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILI 351

Query: 355 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 352 TPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  435 bits (1122), Expect = e-150
 Identities = 103/409 (25%), Positives = 180/409 (44%), Gaps = 19/409 (4%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYS--SKLALIDADSDESLSFSQFKSIVIK 66
           + I    +P   +           L +    Y+    +A  +A +    S++++      
Sbjct: 8   ENIVVGPKPFYPIEEGS---AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCC 64

Query: 67  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126
           +  + ++ G+     + + + N   F I  +  + IG   +  N +YT+ EL   +  S 
Sbjct: 65  LGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISK 124

Query: 127 PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE----LSGSVT 182
           P +V +  +  DKV  +      + +   +                  I+         +
Sbjct: 125 PTIVFSSKKGLDKVITV---QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQAS 181

Query: 183 DIPDVSV-KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLC 240
               V V ++   A ++ SSG+TG+ KGV LTH+N +                    VL 
Sbjct: 182 SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLT 241

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           V+P  H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T   +VP +   L K+
Sbjct: 242 VVPFHHGFGMFTTLG-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGV 360
            L+ K+D+S+L  + SG APL KE+ E   +      + QGYG+TET     +  P  G 
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPE-GD 358

Query: 361 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
            + G++G +V   +A+++ +DT K L PN+ GE+ V+GP +  G  Y+N
Sbjct: 359 DKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG--YVN 405

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  415 bits (1069), Expect = e-142
 Identities = 107/415 (25%), Positives = 186/415 (44%), Gaps = 33/415 (7%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS------DESLSFSQFKS 62
           +  Y+   P L  P     S+   +   +  +  K A+I A+        ES++F +   
Sbjct: 4   ELKYKIGFPSLYYPK---ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICE 60

Query: 63  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122
           +  K++      G+ K + V +  PNSI + +    +  + A     NP+Y   EL   +
Sbjct: 61  VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHIL 120

Query: 123 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182
            DS    ++    L++  K +          +K     +     ++ S  ++++      
Sbjct: 121 NDSEATTLVVHSMLYENFKPV---------LEKTGVERVFVVGGEVNSLSEVMDSGSEDF 171

Query: 183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
           +   V+  + D A + Y+ GTTG+ KGV+LTH N  A +L ++    L       ++  +
Sbjct: 172 ENVKVNP-EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH--MDTIVGCM 228

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS- 301
           PMFH     ++    +  GN  V MG F+ EM    IEKY+ T  W VPP +  L     
Sbjct: 229 PMFHSAEFGLVNL-MVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLE 287

Query: 302 -LVRKFDISSLKLVGSGAAPLGKELMEDCQK------NIPGATIFQGYGMTETCAPISLE 354
              + +D S LK+  +GA P+   L+E   K      N P     Q +GMTE C P+   
Sbjct: 288 SSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC-PMVTT 346

Query: 355 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           NP + + +S + G  ++ +E +++S++  + L   + GEI +RGPN+  G  Y  
Sbjct: 347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG--YWK 399

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  316 bits (813), Expect = e-104
 Identities = 104/379 (27%), Positives = 166/379 (43%), Gaps = 22/379 (5%)

Query: 29  MVHFLF---RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
           M   LF    +      KLA+  A   + +S+++  +   +V++     G+   D V   
Sbjct: 1   MNANLFARLFDKLDDPHKLAIETAA-GDKISYAELVARAGRVANVLVARGLQVGDRVAAQ 59

Query: 86  APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145
              S+   + +L  +  G +    N  YT+ EL   + D+ PK+V+  P   D +  +  
Sbjct: 60  TEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI-- 117

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
                    KV ++          S  D    +G+      +     D AA+LY+SGTTG
Sbjct: 118 -------AAKVGATVETLGPDGRGSLTDA--AAGASEAFATIDRGADDLAAILYTSGTTG 168

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
            SKG +L+H N  + SL +  +       D V++  LP++H  GL V     L     ++
Sbjct: 169 RSKGAMLSHDNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMI 226

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            + KFD +  L  +   R TV   VP     L ++  + K     ++L  SG+APL  + 
Sbjct: 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADT 284

Query: 326 MEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 385
             +      G  + + YGMTET    S  NP  G R  G+ G  + GV A++   +T K 
Sbjct: 285 HREWSA-KTGHAVLERYGMTETNMNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKE 341

Query: 386 LPPNQLGEIWVRGPNVTPG 404
           LP   +G I V+GPNV  G
Sbjct: 342 LPRGDIGMIEVKGPNVFKG 360

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  306 bits (785), Expect = 1e-99
 Identities = 87/388 (22%), Positives = 164/388 (42%), Gaps = 18/388 (4%)

Query: 17  PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI 76
              V   D   ++   L + +       A ++  +D  ++++Q  ++  + +     LGI
Sbjct: 6   HHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGI 65

Query: 77  TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136
            K D V +  PNS+ F   F G   +GA+A   N      E+S  + DS  K+VI     
Sbjct: 66  AKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPS 125

Query: 137 WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 196
              +  +         + +    G ++      S  +   L  +  D P V     D   
Sbjct: 126 APVIDAI---------RAQADPPGTVTDWIGADSLAER--LRSAAADEPAVECGGDDNLF 174

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256
           ++Y+SGTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++ 
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY--RDRLLLPLPMFHVAALTTVIF- 231

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS 316
              +G  ++SM +FD       I + RV +   VP I+  + +     + D    +   +
Sbjct: 232 SAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFIT 291

Query: 317 GAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQ 376
           G AP+ + L++          + QGY +TE+C   +L      +R++GSAG      +  
Sbjct: 292 GGAPMPEALIKIYAA--KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349

Query: 377 IVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           +   D        + GE+ ++   +   
Sbjct: 350 VRGDDG-VIREHGE-GEVVIKSDILLKE 375

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  301 bits (773), Expect = 7e-98
 Identities = 84/384 (21%), Positives = 164/384 (42%), Gaps = 23/384 (5%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           S+  +L++ +      +A+ D    ES ++         ++     L   ++  V ++  
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQ--ESYTYQNLYCEASLLAK---RLKAYQQSRVGLYID 56

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
           NSI   I            +  N   T +E++ Q++  + +L+     L  +   +    
Sbjct: 57  NSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLD 116

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIEL--SGSVTDIPDVSVKQTDAAALLYSSGTTG 205
            +  +   ++++GL+  +  I        +    S ++I + S    D A+++++SGTTG
Sbjct: 117 DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG 176

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
             K V  T +N  A+++            D   L VLP++H+ GLSV+L   + +G  V 
Sbjct: 177 PQKAVPQTFRNHYASAIGCKESLGFDR--DTNWLSVLPIYHISGLSVLLR-AVIEGFTVR 233

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            + KF+ E  L  I+  R+T   +VP  +  L +       +  +L+ +  G A L   +
Sbjct: 234 IVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ---QGLHEPYNLQKILLGGAKLSATM 290

Query: 326 MEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 385
           +E   +      I+  +GMTETC+      P +   R  + G   A V+ +I + +    
Sbjct: 291 IETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---- 344

Query: 386 LPPNQLGEIWVRGPNVTPGIVYIN 409
                 GE+ ++G NV  G  Y+ 
Sbjct: 345 --KEGHGELMIKGANVMNG--YLY 364

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  300 bits (770), Expect = 4e-97
 Identities = 87/390 (22%), Positives = 165/390 (42%), Gaps = 12/390 (3%)

Query: 17  PPLVLPSDPS-FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
           P   + + P+ F+   +LFR + + + K A ID     S ++ + +    + + + R LG
Sbjct: 12  PAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDT--GSTTYGELEERARRFASALRTLG 69

Query: 76  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           +  ++ +L+   +++  P+ FLG +  G +   AN + T ++    +  S+ + VI    
Sbjct: 70  VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA 129

Query: 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
           L   V      A   G +  + S    S       F +L  +  +       +    D A
Sbjct: 130 LVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEEL--IDAAAPAAKAAATGCDDIA 186

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
             LYSSG+TG  KG + TH N    + + +     + E D VV     +F  +GL   L 
Sbjct: 187 FWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGLGNGLT 245

Query: 256 DQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
             L  G   + M  +   +     + ++R TV++ VP +   +  +  +      ++++ 
Sbjct: 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRIC 305

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVE 374
            S    L +E+ E    +  G  I  G G TE    I L N   G    G+ G  V G E
Sbjct: 306 TSAGEALPREIGERFTAHF-GCEILDGIGSTEM-LHIFLSNRA-GAVEYGTTGRPVPGYE 362

Query: 375 AQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
            ++   +    +P  ++G+++++GP+    
Sbjct: 363 IELRD-EAGHAVPDGEVGDLYIKGPSAAVM 391

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  288 bits (739), Expect = 8e-93
 Identities = 89/382 (23%), Positives = 148/382 (38%), Gaps = 27/382 (7%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
             F++     RN+A +  + A +       L+   + +   +++      G+   D V I
Sbjct: 4   HDFTLADVYRRNAALFPDRTAFMVDG--VRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL- 143
            + N          V  IGAI    N      E++  + D  P +V+   +  D V  + 
Sbjct: 62  LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121

Query: 144 -NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            +L  V              +       F    +L+   T          D   +++++ 
Sbjct: 122 PSLGGVKK----------AYAIGDGSGPFAPFKDLASD-TPFSAPEFGAADGFVIIHTAA 170

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN 262
             G  +G +++  N + A   +     L      V L +LP+FHV GL ++L    Q G 
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTE--ADVNLGMLPLFHVTGLGLMLT-LQQAGG 227

Query: 263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
             V   KFD   A R IE ++VTV     P++  +          ++SL+ V     P  
Sbjct: 228 ASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ--AAPAQLASLRAVTGLDTPET 285

Query: 323 KELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 382
            E  E      P AT +  +G +ET   +S   P     R  SAG  +      +V  + 
Sbjct: 286 IERFEAT---CPNATFWATFGQSETS-GLSTFAP--YRDRPKSAGRPLFWRTVAVVDAED 339

Query: 383 LKPLPPNQLGEIWVRGPNVTPG 404
            +PLPP ++GEI +RGP V  G
Sbjct: 340 -RPLPPGEVGEIVLRGPTVFKG 360

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  278 bits (713), Expect = 6e-89
 Identities = 77/381 (20%), Positives = 142/381 (37%), Gaps = 29/381 (7%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L R +       AL        L+ ++ ++ V  V+      G+  +  V + APNS 
Sbjct: 6   EMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA 65

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV--PELWDKVKDLNLPAV 148
              I  L +  +GA+ +  NP    +EL++ +K       +     ++ D +      A 
Sbjct: 66  DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR 125

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
           ++   D V      S                    I D   +    A + Y+SGTTG+ K
Sbjct: 126 IIFLGDLVRDGEPYSYG----------------PPIEDPQREPAQPAFIFYTSGTTGLPK 169

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
             I+  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELM 326
           +F    AL+ +++ +VT  +  P  + ALA           + SL+ V    A +   ++
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289

Query: 327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT--LK 384
           E   +++        YG TE               ++G+        E +IV +     +
Sbjct: 290 ETVHQHL-PGEKVNIYGTTEA-MNSLYMRQ----PKTGTEMAPGFFSEVRIVRIGGGVDE 343

Query: 385 PLPPNQLGEIWVRGPN-VTPG 404
            +   + GE+ V   +    G
Sbjct: 344 IVANGEEGELIVAASDSAFVG 364

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  271 bits (696), Expect = 2e-86
 Identities = 89/400 (22%), Positives = 158/400 (39%), Gaps = 46/400 (11%)

Query: 12  YRSLRPPLVLPSDPSFSMV--HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSH 69
           +       ++P     S +        + + + + AL     + SL++++  +     + 
Sbjct: 6   HHHHHSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRF--GERSLTYAELAAAAGATAG 63

Query: 70  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129
                 I     V ++A  ++   +  +  +  G  A   NP     EL+  + DS P L
Sbjct: 64  -----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSL 118

Query: 130 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 189
           V+  P       D  LP  L                        +     +   +P+   
Sbjct: 119 VLAPP-------DAELPPALGA-------------------LERVDVDVRARGAVPEDGA 152

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 249
              D A ++Y+SGTTG  KG ++  +        ++   +  G  + V++  LP+FHV G
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG--EDVLVQGLPLFHVHG 210

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--- 306
           L + +   L++G  V  +G+F  E A R +     T+ + VP +   +A+          
Sbjct: 211 LVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAK 269

Query: 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSA 366
            ++  +L+ SG+A L     E       G  + + YGMTET    S      G  R+G+ 
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAA-ATGRRVIERYGMTETLMNTS--VRADGEPRAGTV 326

Query: 367 GTLVAGVEAQIVSVDT--LKPLPPNQLGEIWVRGPNVTPG 404
           G  + GVE ++V  D   +  L    +GEI VRGPN+   
Sbjct: 327 GVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTE 366

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  261 bits (669), Expect = 3e-81
 Identities = 77/368 (20%), Positives = 127/368 (34%), Gaps = 19/368 (5%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +A+ID +    LS+ +       ++ S R  GI   +  L+   N     I F  ++ +
Sbjct: 41  SIAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SG 160
           G     A   +  SEL+       P L+I   +        +    L     + SS    
Sbjct: 99  GVAPVLALFSHQRSELNAYASQIEPALLIADRQH----ALFSGDDFLNTFVTEHSSIRVV 154

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            +   S   +  D   ++    D         + A    S GTTG  K +  TH ++  +
Sbjct: 155 QLLNDSGEHNLQDA--INHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212

Query: 221 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAI 279
                   +         LC +P  H + +S          G  VV        +    I
Sbjct: 213 VRRSVEICQFTQ--QTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270

Query: 280 EKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337
           EK++V V  +VPP +     A      +  ++SLKL+  G A L   L       I G  
Sbjct: 271 EKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQ 329

Query: 338 IFQGYGMTETCAPISLENPLVGVRRSGSAGT-LVAGVEAQIVSVDTLKPLPPNQLGEIWV 396
           + Q +GM E              +   + G  +    E  +   +   PLP  ++G +  
Sbjct: 330 LQQVFGMAEG-LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMT 387

Query: 397 RGPNVTPG 404
           RGP    G
Sbjct: 388 RGPYTFRG 395

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  257 bits (659), Expect = 2e-80
 Identities = 83/381 (21%), Positives = 145/381 (38%), Gaps = 21/381 (5%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L     S+   LA+I  +    LS+ +   +   ++      G+ K D  L+  PN  
Sbjct: 34  RILTVGVQSHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVA 91

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
            F I F  ++  G +   A   +   EL+  +K   PKL+I      +   +      L 
Sbjct: 92  EFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI-GSRQHEVFSNNQFIDSLH 150

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
                     +++  +      D IE + + T +   S    + A    S G+TG  K +
Sbjct: 151 DVNLSPEIILMLNHQATDFGLLDWIE-TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLI 209

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK 269
             TH ++  +    +    L    +  +LC LP  H F LS       L  G CVV    
Sbjct: 210 PRTHNDYDYSVRASAEICGLNS--NTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
            +       I++++V +  +VP  ++   + +   K  I SLKL+  G A   + L    
Sbjct: 268 PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQV 327

Query: 330 QKNIPGATIFQGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGV-EAQIVSVDTL 383
            + +    + Q +GM E     T    S E      +   + G  ++   E +IV     
Sbjct: 328 PEVL-NCKLQQVFGMAEGLVNYTRLDDSDE------QIFTTQGRPISSDDEIKIVDEQY- 379

Query: 384 KPLPPNQLGEIWVRGPNVTPG 404
           + +P  ++G +  RGP    G
Sbjct: 380 REVPEGEIGMLATRGPYTFCG 400

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  256 bits (656), Expect = 3e-80
 Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 25/381 (6%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L   +A Y  ++A+   +     S+ +  +   +++  F+ LGI +KD V++  PN  
Sbjct: 29  DLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIK 86

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
            F      +  +GA+   A P +  SE++   + +     I      D     +  ++  
Sbjct: 87  EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIP----DAYSGFDYRSLAR 142

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
             + K+ +   I  + +   F  L +L      +P+V    +D A L  S G+TG+SK +
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKS--SDVAFLQLSGGSTGLSKLI 200

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK 269
             TH ++I +         L      V L  LPM H + LS   +   L  G  VV    
Sbjct: 201 PRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
              + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E     
Sbjct: 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV 318

Query: 330 QKNIPGATIFQGYGMTE-----TCAPISLENPLVGVRRSGSAGT-LVAGVEAQIVSVDTL 383
           +    G T+ Q +GM E     T      E          + G  +    E+++      
Sbjct: 319 KAVF-GCTLQQVFGMAEGLVNYTRLDDPEE------IIVNTQGKPMSPYDESRVWDDHD- 370

Query: 384 KPLPPNQLGEIWVRGPNVTPG 404
           + + P + G +  RGP    G
Sbjct: 371 RDVKPGETGHLLTRGPYTIRG 391

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  200 bits (512), Expect = 9e-59
 Identities = 66/381 (17%), Positives = 137/381 (35%), Gaps = 23/381 (6%)

Query: 31  HFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFA 86
                 +       AL   +        +F +      + ++      G+ + D V +  
Sbjct: 47  WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106

Query: 87  PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--N 144
           P    + +  LG I  G I          +++  +++ S  K ++   E+  +V  +   
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE 166

Query: 145 LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
            P++    + K+  S         ++F  L+    + T    V     +A+A+ ++SGT+
Sbjct: 167 CPSL----RIKLLVSE--KSCDGWLNFKKLLN--EASTTHHCVETGSQEASAIYFTSGTS 218

Query: 205 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           G+ K    ++ +    + M +    L  +   ++  +     +  +   L +    G C 
Sbjct: 219 GLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGWILNILCSLMEPWALGACT 276

Query: 265 VS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
               + KFD  + L+ +  Y +      P +   L +  L   +    L+   +    L 
Sbjct: 277 FVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYKFPHLQNCVTVGESLL 335

Query: 323 KELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 382
            E +E+ +    G  I + YG TET              + G  GT  +  + QI+    
Sbjct: 336 PETLENWRAQT-GLDIRESYGQTETGLTCM--VSKTMKIKPGYMGTAASCYDVQIIDDKG 392

Query: 383 LKPLPPNQLGEIWVRGPNVTP 403
              LPP   G+I +R   + P
Sbjct: 393 -NVLPPGTEGDIGIRVKPIRP 412

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  176 bits (448), Expect = 2e-49
 Identities = 87/464 (18%), Positives = 160/464 (34%), Gaps = 75/464 (16%)

Query: 14  SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLAL--IDADSDESLSFSQFKSIVIKVSHSF 71
           SL+   +       S+V  +   +    +K +   ++ + +E++++ Q       ++ + 
Sbjct: 2   SLKKEYLQCQ----SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATL 57

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSKQVKDS 125
           +  G    D VL+     +     FLG +  G IA    P+Y       + +  + V +S
Sbjct: 58  QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAV---PIYPPAQEKLLDKAQRIVTNS 114

Query: 126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185
            P +V+ + +   K     L                       ++   +     S     
Sbjct: 115 KPVIVLMIADHIKKFTADELNTNPKF------------LKIPAIALESIELNRSSSWQPT 162

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245
            +     D A L Y+SG+T   KGV+++H N +     I     +  +   +    LP  
Sbjct: 163 SIK--SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSW-LPPH 218

Query: 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA--- 298
           H  GL   +   +  G   + M  F         L+ I KY+ T+    P          
Sbjct: 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDYCVKR 277

Query: 299 -KNSLVRKFDISSLKLVGSGAAPLGKELMED-----CQKNIPGATIFQGYGMTETCAPIS 352
            +       D+SS     +GA P+ +E ME       +        +  YG+ E    ++
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337

Query: 353 -----------------LENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLKPLPPN 389
                             ++  V      S G+           E +I+  DTL P   +
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD 397

Query: 390 QLGEIWVRGPNVTPGIVYIN-----FFVFTLFLWGCEHTDSFIR 428
           Q+GEIWV+  +V  G  Y N        F   +   E +  ++R
Sbjct: 398 QVGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLR 439

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  170 bits (433), Expect = 2e-47
 Identities = 84/391 (21%), Positives = 147/391 (37%), Gaps = 43/391 (10%)

Query: 35  RNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
             +     KLA+I  D     +  +F   K    K ++ F   GI K D V++   +   
Sbjct: 64  VYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPA 147
           F  C LG+  +GAIA  A  +    ++  +++ +  K+++ + E  + ++V +       
Sbjct: 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGD 183

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTG 205
           + L    K    G        + F   +E S  + + P  +VS K  D   + +SSGT G
Sbjct: 184 IPL---KKAKVGG--DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAG 238

Query: 206 VSKGVILTHKNFIAASLMISAHQ--ELVGEL--DHVVLCV-----LPMFHVFGLSVILYD 256
             K V   +      +  +      +    +  D +   V             +   LY 
Sbjct: 239 FPKMVEHDN------TYPLGHILTAKYWQNVEDDGLHYTVADSGW-----GKCVWGKLYG 287

Query: 257 QLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
           Q   G  V      +F+ +  L    KY VT +   P I   L K  L   ++ S+LK  
Sbjct: 288 QWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYNFSTLKYA 346

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVR-RSGSAGTLVAGV 373
                PL  E+     +   G  + +G+G TET   I+       +  + GS G    G 
Sbjct: 347 VVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIA---TFPWMEPKPGSIGKPTPGY 402

Query: 374 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404
           + +++  D  +     + GEI +      P 
Sbjct: 403 KIELMDRDG-RLCEVGEEGEIVINTMEGKPV 432

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  166 bits (423), Expect = 1e-46
 Identities = 80/443 (18%), Positives = 141/443 (31%), Gaps = 73/443 (16%)

Query: 14  SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLAL--IDADSD-----ESLSFSQFKSIVIK 66
           S   P         S+   L   +       A   +D + D      +L++SQ     + 
Sbjct: 12  SGLVPRGSHMSVR-SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLN 70

Query: 67  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSK 120
           V+      G +  D V+I AP  + + + FLG +  G IA    P+       T      
Sbjct: 71  VAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSVPQGGVTDERSDS 126

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
            + DS+P  ++T     D V                            +   DL++L   
Sbjct: 127 VLSDSSPVAILTTSSAVDDVVQHVARRPGESPPS--------------IIEVDLLDLDAP 172

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS----AHQELVGELDH 236
                    +    A L Y+SG+T    GV+++H+N       +     A  + +   + 
Sbjct: 173 -NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNS 231

Query: 237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPP 292
            ++  LP +H  GL + +   +  G   V              +  +           P 
Sbjct: 232 ALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAA-PN 290

Query: 293 IILALA----KNSLVRKFDISSLKLVGSGAAPLGKELMED-CQK----NIPGATIFQGYG 343
               LA     +  +   D+ ++  + SG+  +    ++    +    N+    I   Y 
Sbjct: 291 FAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYW 350

Query: 344 MTETCAPIS-----------------LENPLVGVRRSGSAGTLV-----AGVEAQIVSVD 381
           + E    ++                 L          G A +L+          +IV  D
Sbjct: 351 LAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSD 410

Query: 382 TLKPLPPNQLGEIWVRGPNVTPG 404
           T    P   +GEIWV G NV  G
Sbjct: 411 TCIECPDGTVGEIWVHGDNVANG 433

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  151 bits (383), Expect = 1e-40
 Identities = 82/404 (20%), Positives = 152/404 (37%), Gaps = 59/404 (14%)

Query: 31  HFLFRNSASYSSKLALI--DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            FL R +A +  K  +           ++++      ++    R LG+   D V     N
Sbjct: 22  DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 81

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP 146
                  +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+ +   L 
Sbjct: 82  HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 141

Query: 147 AV----LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            V    ++  K               +++ + +        +P+       A  + Y++G
Sbjct: 142 TVQHFVVMDEKA----------PEGYLAYEEALGEEADPVRVPE-----RAACGMAYTTG 186

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV-----------FGLS 251
           TTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV            G  
Sbjct: 187 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 246

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
            +L              + D    +   +   VT    VP + LALA         + +L
Sbjct: 247 QVLPGP-----------RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL 295

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG---------VRR 362
           + +  G +   + L+   ++   G  + QGYG+TET   +                 +  
Sbjct: 296 RRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 353

Query: 363 SGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 404
               G  +  V  ++   +  +P+P +   LGE+ ++GP +T G
Sbjct: 354 KAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG 396

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score =  125 bits (316), Expect = 1e-32
 Identities = 43/278 (15%), Positives = 79/278 (28%), Gaps = 35/278 (12%)

Query: 166 SKIVSFHDLIELSGSVTDIPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
             + + +DL + S     +            +       +  S GTTG  K V+      
Sbjct: 57  KDVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWI 116

Query: 218 IA-ASLMISAHQELVGELDHVVLCVLPMF-HVFGLSVILYDQLQKGNCV----------- 264
            A  S  +S +Q   G      L  +P   H+ G           G              
Sbjct: 117 EALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKR 176

Query: 265 -VSMGKFD---------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
            +S G            ++     +    +      PP++  L K   V      SL  +
Sbjct: 177 SLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQI 236

Query: 315 GSGAAPLGKELMEDCQKNI-PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV 373
             G   L  + ++     I P       YG T     +S    +    +     +    +
Sbjct: 237 TLGGTELNLDEIKFIASEILPDCEFSASYGSTSAL-GVSRSLLITSESQQVIYDSFSPFI 295

Query: 374 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF 411
              +V   T + +   + G + V   +++P   Y    
Sbjct: 296 TYDVVDSITAQTVEYGERGNVIVT--HLSPWAFYPRVA 331

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 82.2 bits (204), Expect = 5e-17
 Identities = 70/355 (19%), Positives = 126/355 (35%), Gaps = 48/355 (13%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
           H         +  ++++        I FLG +  G     A    +       + +  ++
Sbjct: 41  HWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGH----AYIPVDLSIPADRVQRIAEN 96

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S  KL+++   +   V DL +  V                     +  D+       T  
Sbjct: 97  SGAKLLLSATAV--TVTDLPVRIVSE------------------DNLKDIFFTHKGNTPN 136

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLP 243
           P+ +VK  +   ++Y+SG+TG  KGV +T+   +  S    A ++  +     V L   P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQ-VFLNQAP 193

Query: 244 MFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
               F LSV+ +Y  L  G  +           +    ++E+  + VW   P        
Sbjct: 194 F--SFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251

Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISLE 354
            +   +  + ++K        L  E+     +  P ATI   YG TE     T   ++ E
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE 311

Query: 355 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
                  +S   G   +     I+  D     P  + GEI + GP+V+ G  Y+ 
Sbjct: 312 VL--DQYKSLPVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPSVSVG--YLG 361

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 80.6 bits (200), Expect = 1e-16
 Identities = 66/358 (18%), Positives = 123/358 (34%), Gaps = 55/358 (15%)

Query: 69  HSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVK 123
            + +     +K   +L++     H  + FLG +  G          +       ++K ++
Sbjct: 41  AAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGH----PYIPVDLSIPSERIAKIIE 96

Query: 124 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
            S  +L+I    L        +  V                        + +  +   + 
Sbjct: 97  SSGAELLIHAAGLSIDAVGQQIQTVSA----------------------EELLENEGGSV 134

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMISAHQELVGELDHVVLC 240
             D  VK+ +   ++Y+SG+TG  KGV ++     +F     + +     V     + L 
Sbjct: 135 SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDW--ICADFP--VSGGK-IFLN 189

Query: 241 VLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILA 296
             P    F LSV+ LY  LQ G  +           ++    ++K  + VW   P  +  
Sbjct: 190 QAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247

Query: 297 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPI 351
              +    +  +            L   + +   +  P A IF  YG TE     T   I
Sbjct: 248 CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307

Query: 352 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           + +        S   G     +   I+  +  +PLP  + GEI + GP+V+ G  Y+ 
Sbjct: 308 TNDVI--SRSESLPVGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGPSVSRG--YLG 360

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 68/351 (19%), Positives = 116/351 (33%), Gaps = 45/351 (12%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
              +  G  K  VV ++   S+   I  LGV+  GA    A    +P      +S  + D
Sbjct: 504 RRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA----AYLPVDPKLPEDRISYMLAD 559

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S    ++T  E+ ++  +L      L                    F D           
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTL--------------------FIDDQTRFEEQASD 599

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
           P  ++   D A ++Y+SGTTG  KG I TH N     L+         + D   L V   
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANI--QGLVKHVDYMAFSDQD-TFLSVSN- 655

Query: 245 FHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            + F       Y  +     ++        D E     I +  V V +    +   L   
Sbjct: 656 -YAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET--CAPISLENPLV 358
                  +  L+ +  G        +    + +    +   YG TE    A   + + L 
Sbjct: 715 GEDW---MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP 771

Query: 359 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
               S   G  ++     I++ +  +  P   +GE+ + G  V+ G  Y+N
Sbjct: 772 DSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKG--YVN 819

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 80.3 bits (199), Expect = 2e-16
 Identities = 73/375 (19%), Positives = 124/375 (33%), Gaps = 54/375 (14%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA-- 109
            E  ++ Q K     ++     L +  K  VL+F   +      F+ +   G     A  
Sbjct: 27  GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH----AYI 82

Query: 110 --NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
             +       +   ++ + P L+I + E    ++ ++L ++                   
Sbjct: 83  PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSE----------------- 125

Query: 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMI 224
                +  +L+    +    SVK  D   ++++SGTTG  KGV ++H    +F     MI
Sbjct: 126 ----IESAKLAEMPYE-RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNW--MI 178

Query: 225 SAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIE 280
                 V +    +L   P    F LSV+     L  G  +         D +     I 
Sbjct: 179 EDAAFDVPKQP-QMLAQPPY--SFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIA 235

Query: 281 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +  V +W   P        +    +  + +L         L         +  P A I  
Sbjct: 236 QLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295

Query: 341 GYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEI 394
            YG TE     +   I+ E            G         I  +D   K L   + GEI
Sbjct: 296 AYGPTEATVALSAIEITREMV--DNYTRLPIGYPKPDSPTYI--IDEDGKELSSGEQGEI 351

Query: 395 WVRGPNVTPGIVYIN 409
            V GP V+ G  Y+N
Sbjct: 352 IVTGPAVSKG--YLN 364

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 76.1 bits (188), Expect = 4e-15
 Identities = 59/359 (16%), Positives = 114/359 (31%), Gaps = 56/359 (15%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
           +   H  +     + +    S+      +G++  G                   S  ++D
Sbjct: 70  NLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGN----TYVPIEAGLPNDRKSFLLRD 124

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S   +       +D V+      VL                           LS   T  
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIE-----------------NLSTQDTSD 167

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP- 243
              +  +   A LLY+SG+TG  KGV ++  N  +      A  +L+G +    L +   
Sbjct: 168 ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS---FSDAWGKLIGNVAPKSLELGGV 224

Query: 244 ----MFH--VFGLSVI-LYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIIL 295
                     F + +  ++   + G C V+  +  +   L R   +  VT   +VP    
Sbjct: 225 GKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP---- 280

Query: 296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAP 350
           +L   + +   D   L  +G G   +     +    +     +   YG TE     +   
Sbjct: 281 SLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGR 339

Query: 351 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           I  ++           G  +    A +++  + + +     GE+ + G  V  G  Y+N
Sbjct: 340 ILPDSDTR------CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG--YLN 390

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 72.5 bits (179), Expect = 7e-14
 Identities = 69/356 (19%), Positives = 118/356 (33%), Gaps = 61/356 (17%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVI-AIGA---IASTANPVYTVSELSKQVKD 124
             F   GI K  +V I    SI   I  L V+ A GA   I    +  Y    +   + D
Sbjct: 79  RIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI----DIEYPKERIQYILDD 134

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S  ++++T   L   + ++     +                       +   +       
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEIF--------------------EEDTIKIREGTN 174

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--VGELDHVVLCVL 242
             V  K TD A ++Y+SGTTG  KG +L HK       +    +    V E D  +    
Sbjct: 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISN---LKVFFENSLNVTEKD-RIGQFA 230

Query: 243 PMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
            +   F  SV  ++  L  G  +         D     + I +  +TV  + P  ++ L 
Sbjct: 231 SI--SFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD 288

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISL 353
              +       S++ + +  +     L+   +      T    YG TE     T    + 
Sbjct: 289 PERI------LSIQTLITAGSATSPSLVNKWK---EKVTYINAYGPTETTICATTWVATK 339

Query: 354 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
           E     V      G  +   +  IV  + L+     + GE+ + G  +  G  Y  
Sbjct: 340 ETIGHSV----PIGAPIQNTQIYIVDEN-LQLKSVGEAGELCIGGEGLARG--YWK 388

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 67/322 (20%), Positives = 125/322 (38%), Gaps = 60/322 (18%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+      + A+I    D    + +S+ +    V + +++   LGI K DVV I+ P   
Sbjct: 84  RHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----- 145
              +  L    IGA+ S     ++   ++  + DS+ +LVIT  E     + + L     
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD 203

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSF--------HDLIELSGSVTDIPDVSVKQTDAAAL 197
            A+   +   V    ++ R+   + +         DLIE   +  +    ++   D   +
Sbjct: 204 DALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFI 261

Query: 198 LYSSGTTGVSKGVI-----------LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           LY+SG+TG  KGV+            T K        +  +         +  C   +  
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKY-------VFDYHP-----GDIYWCTADVGW 309

Query: 247 VFGLSVILYDQLQKGNCVV---------SMGKF-DIEMALRAIEKYRVTVWWVVPPIILA 296
           V G S +LY  L  G   +         +  +   +      ++K++V + +  P  I A
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV------VDKHQVNILYTAPTAIRA 363

Query: 297 LAK--NSLVRKFDISSLKLVGS 316
           L    +  +   D SSL+++GS
Sbjct: 364 LMAEGDKAIEGTDRSSLRILGS 385

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 67.1 bits (165), Expect = 4e-12
 Identities = 53/354 (14%), Positives = 101/354 (28%), Gaps = 57/354 (16%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
                        + ++   S     C L ++  G          +     +  ++  + 
Sbjct: 67  DYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH----HYLYIDLKQPAAWNAELCRQ 122

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
            + +L++           L  P V                         +  L  +   +
Sbjct: 123 VDCRLILDCSTTPTPANGL--PCV------------------------PVRHLPAAPASV 156

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
                     A + +SSGTTG  K +  TH       L +              L   P 
Sbjct: 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAG--ITRLCLGQSFLAFAPQM-RFLVNSP- 212

Query: 245 FHVFGLSVI-LYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
              F  + + ++  L  G C V   +G  D  +  + I +      W+   +   L    
Sbjct: 213 -LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE-----TCAPISLENP 356
                 +  L+ + +G   L    +       P   +  GYG TE      C  ++    
Sbjct: 272 PDC---LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVT---D 325

Query: 357 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWVRGPNVTPGIVYIN 409
                     G  +AG    ++  +  + +  P++ GEI   G  +  G  Y N
Sbjct: 326 DDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQG--YRN 376

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVF--GLSVILY 255
           SSGTTG    ++ +    +  A  +    +   + + D         + +F  GL     
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSS--GYGMFTGGL--GFQ 149

Query: 256 DQLQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLK 312
              ++ G   V     + +  ++ I  ++ T    +P   + LA+       D   ++LK
Sbjct: 150 YGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLK 209

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA 371
            +  GA P   E     ++ +     +  +GMTE   P ++ E            G    
Sbjct: 210 TLVIGAEPHTDEQRRKIER-MLNVKAYNSFGMTEMNGPGVAFECQ-------EQNGMHFW 261

Query: 372 --GVEAQIVSVDTLKPLPPNQLGEI 394
                 +I+  +T +P+P  ++GE+
Sbjct: 262 EDCYLVEIIDPETGEPVPEGEIGEL 286

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 17/203 (8%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG    V  T    +  A  +  S         D V +         GL    +  
Sbjct: 98  SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL--GAHYG 155

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  V+  G    E  ++ I+ +R  +  V P  +L++A     +  D   SSL++ 
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIG 215

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA-- 371
             GA P   ++    ++ + G      YG++E   P ++ E            G  +   
Sbjct: 216 IFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECV------ETKDGPTIWED 268

Query: 372 GVEAQIVSVDTLKPLPPNQLGEI 394
               +I+  +T + LP  +LGE+
Sbjct: 269 HFYPEIIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 17/203 (8%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG    V  T +  +  A     S         D +           GL   ++  
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL--GIHYG 157

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  VV M     E  ++ I  +   +  V P  +L L    + +  D   SSLK+ 
Sbjct: 158 AERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIG 217

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA-- 371
             GA P  + L  + +  + G      YG++E   P ++ E            G ++   
Sbjct: 218 IFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECV------ETKDGPVIWED 270

Query: 372 GVEAQIVSVDTLKPLPPNQLGEI 394
               +I+   T + LP    GE+
Sbjct: 271 HFYPEIIDPVTGEVLPDGSQGEL 293

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 38/214 (17%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNS 89
           R++    +K A+I    +     S+++ +    V +V+    + +G+ K D V ++ P  
Sbjct: 90  RHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMV 149

Query: 90  IHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145
               I  L +  IGAI S    V    ++ + L  ++ D + K+VIT  E     K +  
Sbjct: 150 PEAIITLLAISRIGAIHS----VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 205

Query: 146 PAVL---LGSKDKVSSSGLISRSSKI---------VSFHDLIELSGSVTDIPDVSVKQTD 193
             ++   L     V    +  +++           + +    +     T  P   V   D
Sbjct: 206 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK--KYKTYYPCTPVDSED 263

Query: 194 AAALLYSSGTTGVSKGVI-----------LTHKN 216
              LLY+SG+TG  KGV            LT + 
Sbjct: 264 PLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 299 KNSLVRKFDISSLKLVGSGAAP-LG-KELME 327
           K +L +K   +SLKL    +AP L  K  ME
Sbjct: 19  KQAL-KKLQ-ASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.98
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.98
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.17
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.08
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	96.46
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	95.21
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	94.84
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	94.8
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	94.69
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	90.77
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	90.44
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	89.41
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	89.31
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	88.44
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	86.68
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	85.96
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	85.41
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	84.31
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	84.14
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	83.36
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	82.92
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	82.51
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	81.77
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	81.1

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.9e-66  Score=511.35  Aligned_cols=410  Identities=34%  Similarity=0.547  Sum_probs=348.8

Q ss_pred             CccceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 013850            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (435)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~   86 (435)
                      ++..++++..++..+|.+  .|+.++|.++++++|+++|+++.+.++.+||+||.++++++|+.|++.|+++||+|+|++
T Consensus         4 ~~~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~   81 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFL   81 (536)
T ss_dssp             -CCCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             ccceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            566788888888888876  899999999999999999999876678999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC--CCcEEeccCCcccccccccc
Q 013850           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISR  164 (435)
Q Consensus        87 ~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  164 (435)
                      +|++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+....  ....++..+         ..
T Consensus        82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~  152 (536)
T 3ni2_A           82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVD---------SA  152 (536)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESS---------CC
T ss_pred             CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEec---------CC
Confidence            9999999999999999999999999999999999999999999999988766654432  111222222         11


Q ss_pred             cccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh--hccCCCcEEEecc
Q 013850          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVL  242 (435)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~d~~l~~~  242 (435)
                      ......+.++.....  ...+.....++++++|+|||||||.||+|.++|+++.+.+........  +....+|++++.+
T Consensus       153 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~  230 (536)
T 3ni2_A          153 PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL  230 (536)
T ss_dssp             CTTCEETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECS
T ss_pred             CCCccCHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEec
Confidence            223345555554332  223445668899999999999999999999999999887655432211  1123349999999


Q ss_pred             hHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850          243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       243 ~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~  322 (435)
                      |++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus       231 p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~  310 (536)
T 3ni2_A          231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLG  310 (536)
T ss_dssp             CTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCC
T ss_pred             ChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCC
Confidence            99999999767899999999999999999999999999999999999999999999988777888999999999999999


Q ss_pred             HHHHHHHHhhCCCCeeecCcCcccccccccccC---CCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          323 KELMEDCQKNIPGATIFQGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      +++.+++++.|+++++++.||+||++++++...   ......+.+++|+|+++++++|+|++++++++.|+.|||+++|+
T Consensus       311 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~  390 (536)
T 3ni2_A          311 KELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD  390 (536)
T ss_dssp             HHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred             HHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCc
Confidence            999999999998799999999999987655431   12224567899999999999999988999999999999999999


Q ss_pred             CccccccccCCcccccccccccccCcceecCCCCC
Q 013850          400 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       400 ~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +++.|  ||++|+.|.+.|   ..++||+|||+++
T Consensus       391 ~v~~G--Y~~~p~~t~~~~---~~~g~~~TGDl~~  420 (536)
T 3ni2_A          391 QIMKG--YLNDPEATSRTI---DKEGWLHTGDIGY  420 (536)
T ss_dssp             TSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             ccchh--hcCChhHHHhhc---cCCCceEcccEEE
Confidence            99999  999999999877   3578999999874

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.4e-63  Score=494.61  Aligned_cols=410  Identities=25%  Similarity=0.345  Sum_probs=337.7

Q ss_pred             ccCccceeecCCCCCCCCCCCCCchHH-HHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 013850            5 GYGRDGIYRSLRPPLVLPSDPSFSMVH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL   83 (435)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~   83 (435)
                      ..+.++++++..+....|..  .|+.+ +|.++++++ +++|+++...++.+||+||.++++++|+.|++.|+++||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~p~~--~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~   81 (548)
T 2d1s_A            5 ENDENIVVGPKPFYPIEEGS--AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA   81 (548)
T ss_dssp             --CTTSEECCCCSSCCCSSC--HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEE
T ss_pred             CCCcceEecCCCCCCCCCCc--CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            34566788888776666654  79999 899999999 999999854468999999999999999999999999999999


Q ss_pred             EEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccc
Q 013850           84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSS  158 (435)
Q Consensus        84 l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  158 (435)
                      |+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+....     ...++.... .   
T Consensus        82 i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---  157 (548)
T 2d1s_A           82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDS-K---  157 (548)
T ss_dssp             EECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTC-S---
T ss_pred             EEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCC-c---
Confidence            9999999999999999999999999999999999999999999999999988766554321     122222211 0   


Q ss_pred             cccccccccccchhhhhhhcCCCCCCCCCCCC-----C-CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hc
Q 013850          159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVK-----Q-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LV  231 (435)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~  231 (435)
                          ........++++...... ...+.....     + +++++|+|||||||.||+|.++|+++.+.......... +.
T Consensus       158 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~  232 (548)
T 2d1s_A          158 ----VDYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ  232 (548)
T ss_dssp             ----SCBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred             ----ccccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccC
Confidence                000123345555544321 101111222     4 89999999999999999999999999887665443311 11


Q ss_pred             cCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcce
Q 013850          232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL  311 (435)
Q Consensus       232 ~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l  311 (435)
                      ...+|++++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++|
T Consensus       233 ~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l  311 (548)
T 2d1s_A          233 VSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNL  311 (548)
T ss_dssp             CCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTC
T ss_pred             CCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccce
Confidence            223499999999999999975577777 9999999999999999999999999999999999999998876666788999


Q ss_pred             eEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCc
Q 013850          312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL  391 (435)
Q Consensus       312 r~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~  391 (435)
                      |.+++||+++++++.+++++.|+++++++.||+||++..+......  ..+.+++|+|+++++++|+|+++++++++|+.
T Consensus       312 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~  389 (548)
T 2d1s_A          312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR  389 (548)
T ss_dssp             CEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTTCC
T ss_pred             eEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCCCC
Confidence            9999999999999999999999779999999999998776654322  45678999999999999999889999999999


Q ss_pred             eeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          392 GEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       392 Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |||+++|++++.|  ||++|+.|.+.|   ..++||+|||+++
T Consensus       390 GEl~v~g~~v~~G--Y~~~~~~t~~~f---~~~g~~~TGDl~~  427 (548)
T 2d1s_A          390 GEVCVKGPMLMKG--YVNNPEATKELI---DEEGWLHTGDIGY  427 (548)
T ss_dssp             EEEEEESTTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             eEEEECCHHHhhh--hcCChHHhhhcc---cCCcEEEccCEEE
Confidence            9999999999999  999999999877   3578999999874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.8e-63  Score=494.46  Aligned_cols=407  Identities=27%  Similarity=0.393  Sum_probs=333.1

Q ss_pred             cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeee---ecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 013850            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF   85 (435)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~   85 (435)
                      ..++..+.+....+.   .|+.++|.++++++|+++|++   +...++.+||+||.++++++|+.|+++|+++||+|+|+
T Consensus         5 ~~~~~~~~~~~~~~~---~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~   81 (550)
T 3rix_A            5 KNIKKGPAPFYPLED---GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVC   81 (550)
T ss_dssp             GGSEECCCCSSCCCC---SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             cceeeCCCCCCCccc---CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            445555555555554   699999999999999999976   54446899999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccc
Q 013850           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG  160 (435)
Q Consensus        86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  160 (435)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+....     ...+++....      
T Consensus        82 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  155 (550)
T 3rix_A           82 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK------  155 (550)
T ss_dssp             CSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS------
T ss_pred             cCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC------
Confidence            99999999999999999999999999999999999999999999999998776654432     2223322221      


Q ss_pred             cccccccccchhhhhhhcCCCC----CC-CCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCC
Q 013850          161 LISRSSKIVSFHDLIELSGSVT----DI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGEL  234 (435)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~  234 (435)
                        .......++.++........    .. +.....++++++|+|||||||.||+|.++|+++............ .....
T Consensus       156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~  233 (550)
T 3rix_A          156 --TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP  233 (550)
T ss_dssp             --SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCT
T ss_pred             --ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCC
Confidence              11223445555554332110    11 122234678999999999999999999999999887655433221 12223


Q ss_pred             CcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEE
Q 013850          235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV  314 (435)
Q Consensus       235 ~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i  314 (435)
                      ++++++.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+
T Consensus       234 ~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i  312 (550)
T 3rix_A          234 DTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI  312 (550)
T ss_dssp             TCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEE
T ss_pred             CcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEE
Confidence            49999999999999985 77889999999999999999999999999999999999999999999887777889999999


Q ss_pred             EecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeE
Q 013850          315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI  394 (435)
Q Consensus       315 ~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei  394 (435)
                      ++||+++++++.+++++.++...+++.||+||+++.+......  ..+.+++|+|+++++++|+|+++++++++|+.|||
T Consensus       313 ~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl  390 (550)
T 3rix_A          313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGEL  390 (550)
T ss_dssp             EECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred             EEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEE
Confidence            9999999999999999999845699999999999877766544  55778999999999999999889999999999999


Q ss_pred             EEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          395 WVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       395 ~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|+|++++.|  ||++|+.|.+.|   +.+|||+|||+++
T Consensus       391 ~v~g~~v~~G--Y~~~~~~t~~~~---~~~g~~~TGDl~~  425 (550)
T 3rix_A          391 CVRGPMIMSG--YVNNPEATNALI---DKDGWLHSGDIAY  425 (550)
T ss_dssp             EEESTTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             EEeCCCcchh--hcCChhhhhhhc---CCCCCeecCcEEE
Confidence            9999999999  999999999876   3578999999874

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.9e-63  Score=492.90  Aligned_cols=398  Identities=28%  Similarity=0.446  Sum_probs=336.5

Q ss_pred             eecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCC------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 013850           12 YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF   85 (435)
Q Consensus        12 ~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~   85 (435)
                      |++..+...+|.   .|+.++|.++++++|+++|+++.+.+      +.+||+||.++++++|+.|++.|+++||+|+|+
T Consensus         7 ~~~~~p~~~~~~---~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~   83 (549)
T 3g7s_A            7 YKIGFPSLYYPK---ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVC   83 (549)
T ss_dssp             SCCCCCCCCCCC---CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             eccCCCCCCcCC---CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            444455555554   79999999999999999999987522      789999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCccccccc
Q 013850           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGL  161 (435)
Q Consensus        86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  161 (435)
                      ++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+....    ...+++..         
T Consensus        84 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------  154 (549)
T 3g7s_A           84 IPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG---------  154 (549)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET---------
T ss_pred             CCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC---------
Confidence            99999999999999999999999999999999999999999999999988776655432    22222221         


Q ss_pred             ccccccccchhhhhhhcCCCCCCCCCCCCC-CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEe
Q 013850          162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC  240 (435)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~  240 (435)
                          .....+.++.....  .........+ +++++|+|||||||.||+|.++|+++.+.+........+...  |++++
T Consensus       155 ----~~~~~~~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~~~  226 (549)
T 3g7s_A          155 ----GEVNSLSEVMDSGS--EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM--DTIVG  226 (549)
T ss_dssp             ----CSSSCHHHHHHHSC--SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTT--CEEEC
T ss_pred             ----CCCcCHHHHHhcCc--cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCC--CEEEE
Confidence                12345666655444  2223333444 899999999999999999999999999988776665555333  99999


Q ss_pred             cchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecC
Q 013850          241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGA  318 (435)
Q Consensus       241 ~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG  318 (435)
                      .+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++......  .++++||.+++||
T Consensus       227 ~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg  305 (549)
T 3g7s_A          227 CMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGA  305 (549)
T ss_dssp             CSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEES
T ss_pred             eCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCC
Confidence            99999999996 58889999999999999999999999999999999999999999998765544  6789999999999


Q ss_pred             CCCcHHHHHHHHhh----CC--CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCce
Q 013850          319 APLGKELMEDCQKN----IP--GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  392 (435)
Q Consensus       319 ~~l~~~~~~~~~~~----~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G  392 (435)
                      +++++++.+++.+.    ++  ++++++.||+||++.+++...... ..+..++|+|+++++++|+|+++++++++|+.|
T Consensus       306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~G  384 (549)
T 3g7s_A          306 WPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESG  384 (549)
T ss_dssp             SCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCE
T ss_pred             ccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCce
Confidence            99999999999987    54  389999999999998777654432 356789999999999999998899999999999


Q ss_pred             eEEEeCCCccccccccCCcccccccccccccCc--ceecCCCCC
Q 013850          393 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS--FIRGKDQQT  434 (435)
Q Consensus       393 ei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~--~~~tgD~~~  434 (435)
                      ||+|+|++++.|  ||++|+.|++.| +.+.+|  ||+|||+++
T Consensus       385 El~v~g~~v~~G--Y~~~~~~t~~~f-~~~~~g~~~~~TGDl~~  425 (549)
T 3g7s_A          385 EIVIRGPNIFKG--YWKREKENQECW-WYDEKGRKFFRTGDVGF  425 (549)
T ss_dssp             EEEEESTTSCSE--ETTCTTGGGTSE-EECTTCCEEEEEEEEEE
T ss_pred             EEEEECcchhhh--hCCChhhhhhhh-hccCCCCceEccCcEEE
Confidence            999999999999  999999999988 334456  999999874

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=8.8e-63  Score=482.68  Aligned_cols=389  Identities=19%  Similarity=0.196  Sum_probs=312.3

Q ss_pred             CCchHHHHHhhcccCCCceeeeecC-----CC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHH
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA   98 (435)
                      +.|+.++|.++++++|+++|+++.+     ++  +.+||+||.++++++|+.|+++|+ +||+|+|+++|++++++++||
T Consensus        23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA  101 (480)
T 3t5a_A           23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG  101 (480)
T ss_dssp             -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence            4799999999999999999998753     22  789999999999999999999996 999999999999999999999


Q ss_pred             HHHcCcEEEecCC---CCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhh
Q 013850           99 VIAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (435)
Q Consensus        99 ~~~~G~~~v~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (435)
                      |+++|++++|+++   .++.+++.++++.++++++|++......+...........             ......++...
T Consensus       102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~  168 (480)
T 3t5a_A          102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES-------------PPSIIEVDLLD  168 (480)
T ss_dssp             HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------------------CCEEEEGGGSC
T ss_pred             HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc-------------ccceeEecccc
Confidence            9999999999999   7789999999999999999999988777665432111000             00011111111


Q ss_pred             hhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc----CCCcEEEecchHHHHHHHH
Q 013850          176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG----ELDHVVLCVLPMFHVFGLS  251 (435)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~----~~~d~~l~~~~l~~~~g~~  251 (435)
                      ....  .........++++++|+|||||||.||+|+++|+++.+.+...........    ..++++++.+|++|.+|+.
T Consensus       169 ~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  246 (480)
T 3t5a_A          169 LDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLV  246 (480)
T ss_dssp             TTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHH
T ss_pred             cccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHH
Confidence            1111  223345567899999999999999999999999999988777666555433    1149999999999999987


Q ss_pred             HHHHhhhhcCcEEEecCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhc----ccccCCCCcceeEEEecCCCCcH
Q 013850          252 VILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGAAPLGK  323 (435)
Q Consensus       252 ~~~~~~l~~G~~i~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~lr~i~~gG~~l~~  323 (435)
                      ..++.++..|+++++.+..    ++..+++.++++++| +.++|+++..++..    ......++++||.+++||+++++
T Consensus       247 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~  325 (480)
T 3t5a_A          247 IGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQA  325 (480)
T ss_dssp             HHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCH
T ss_pred             HHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCH
Confidence            7789999999999999754    899999999999999 88899988888764    33456678999999999999999


Q ss_pred             HHHHHHHhhCC-----CCeeecCcCcccccccccccCCCCC-----------------------CcCCCCcccccCCcEE
Q 013850          324 ELMEDCQKNIP-----GATIFQGYGMTETCAPISLENPLVG-----------------------VRRSGSAGTLVAGVEA  375 (435)
Q Consensus       324 ~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~  375 (435)
                      ++.++|++.++     ++++++.||+||++.+++.......                       ..+..++|+|++ +++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~  404 (480)
T 3t5a_A          326 ATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIV  404 (480)
T ss_dssp             HHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEE
T ss_pred             HHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEE
Confidence            99999999984     4689999999999987776544321                       124468999999 999


Q ss_pred             EEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc--------ccccCcceecCCCCC
Q 013850          376 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--------CEHTDSFIRGKDQQT  434 (435)
Q Consensus       376 ~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--------~~~~~~~~~tgD~~~  434 (435)
                      +|+|++++++++.|++|||+|+|++++.|  ||++|+.|++.|.        ....++||+|||+++
T Consensus       405 ~ivd~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~  469 (480)
T 3t5a_A          405 RIVDSDTCIECPDGTVGEIWVHGDNVANG--YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF  469 (480)
T ss_dssp             EEEETTTTEECCTTBCEEEEEESTTSCCC--BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEE
T ss_pred             EEEcCCCCcCCCCCCEEEEEEeCCccccc--cccCcchhHHHHhhhhccccCCCCCCCeeeccceee
Confidence            99998779999999999999999999999  9999999999882        112467999999874

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.4e-62  Score=482.63  Aligned_cols=385  Identities=23%  Similarity=0.327  Sum_probs=323.1

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      ..|+.++|.++++++|+++|+++.+....+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus        15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   94 (517)
T 3r44_A           15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV   94 (517)
T ss_dssp             GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence            38999999999999999999998753459999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      ++|+++.++.+++.++++.++++++|++......+.............         ........+.+......  ...+
T Consensus        95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~  163 (517)
T 3r44_A           95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTV---------TDWIGADSLAERLRSAA--ADEP  163 (517)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTC---------CEEEEHHHHHHHHHHCC--CCCC
T ss_pred             EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEE---------EEccCcccHHHHhhccC--cCCC
Confidence            999999999999999999999999999988776654432100000000         00000122334443333  3344


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||+|.++|+++.+..........+..  +|++++.+|++|.+++...++..+ .|++++
T Consensus       164 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v  240 (517)
T 3r44_A          164 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY--RDRLLLPLPMFHVAALTTVIFSAM-RGVTLI  240 (517)
T ss_dssp             CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCT--TCEEEECSCTTSHHHHHHHHHHHH-HTCEEE
T ss_pred             CCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCC--CCEEEEeCchHHHHHHHHHHHHHh-cCeEEE
Confidence            55678899999999999999999999999999998777665554433  399999999999999964444444 999999


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcc
Q 013850          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT  345 (435)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~t  345 (435)
                      +.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+.+.+.  ++++++.||+|
T Consensus       241 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~T  318 (517)
T 3r44_A          241 SMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALT  318 (517)
T ss_dssp             ECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECG
T ss_pred             EeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccc
Confidence            9999999999999999999999999999999999877777789999999999999999999999987  59999999999


Q ss_pred             cccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCc
Q 013850          346 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  425 (435)
Q Consensus       346 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~  425 (435)
                      |+++.++.....+...+.+++|+|+++++++|+| +++.+++.| .|||+++|++++.|  ||++|+.|.+.|    .++
T Consensus       319 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~G--Y~~~p~~t~~~f----~~g  390 (517)
T 3r44_A          319 ESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKE--YWNRPEATRDAF----DNG  390 (517)
T ss_dssp             GGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSE--ETTCHHHHHHTE----ETT
T ss_pred             ccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhh--hCCChhhhHhhh----cCC
Confidence            9988776655444356778999999999999999 689999988 89999999999999  999999999988    478


Q ss_pred             ceecCCCCC
Q 013850          426 FIRGKDQQT  434 (435)
Q Consensus       426 ~~~tgD~~~  434 (435)
                      ||+|||+++
T Consensus       391 ~~~TGDl~~  399 (517)
T 3r44_A          391 WFRTGDIGE  399 (517)
T ss_dssp             EEEEEEEEE
T ss_pred             CEecceeEE
Confidence            999999874

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.2e-61  Score=511.40  Aligned_cols=415  Identities=36%  Similarity=0.568  Sum_probs=345.6

Q ss_pred             cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 013850            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN   88 (435)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~   88 (435)
                      ..++++..+...+|..  .|+.++|.++++++|+++|+++.+.++.+||+||.++++++|+.|+++|+++||+|+|+++|
T Consensus        45 ~~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n  122 (979)
T 3tsy_A           45 DVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN  122 (979)
T ss_dssp             CCCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred             CceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence            4567777777777766  89999999999999999999998667899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC--CCcEEeccCCcccccccccccc
Q 013850           89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus        89 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      ++++++++|||+++|++++|++|.++.+++.++++.++++++|+++...+.+....  ....++..+...    ......
T Consensus       123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  198 (979)
T 3tsy_A          123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE----SVPIPE  198 (979)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT----TSCCCT
T ss_pred             CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc----cccCCc
Confidence            99999999999999999999999999999999999999999999987665444321  112222222110    001122


Q ss_pred             cccchhhhhhhcCC-CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhh--hhccCCCcEEEecch
Q 013850          167 KIVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLP  243 (435)
Q Consensus       167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~d~~l~~~~  243 (435)
                      ....+.++...... ....+.....++++++|+|||||||.||+|.++|+++.+.+.......  .+....+|++++.+|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p  278 (979)
T 3tsy_A          199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP  278 (979)
T ss_dssp             TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSC
T ss_pred             ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECc
Confidence            33445544432221 012234556889999999999999999999999999988765543321  112233499999999


Q ss_pred             HHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcH
Q 013850          244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (435)
Q Consensus       244 l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~  323 (435)
                      ++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++
T Consensus       279 ~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~  358 (979)
T 3tsy_A          279 MFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGK  358 (979)
T ss_dssp             SSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCS
T ss_pred             hHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCH
Confidence            99999997678899999999999999999999999999999999999999999999888778889999999999999999


Q ss_pred             HHHHHHHhhCCCCeeecCcCcccccccccccC---CCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCC
Q 013850          324 ELMEDCQKNIPGATIFQGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN  400 (435)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~  400 (435)
                      ++.+++++.|+++++++.||+||++.+++...   ......+.+++|+|+++++++|+|+++++++++|+.|||+|+|++
T Consensus       359 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~  438 (979)
T 3tsy_A          359 ELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ  438 (979)
T ss_dssp             SHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTT
T ss_pred             HHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCC
Confidence            99999999998899999999999987665432   122245678999999999999999889999999999999999999


Q ss_pred             ccccccccCCcccccccccccccCcceecCCCCC
Q 013850          401 VTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       401 ~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++.|  ||++|+.|.+.|   ..++||+|||+++
T Consensus       439 v~~G--Y~~~p~~t~~~f---~~~g~~~TGDl~~  467 (979)
T 3tsy_A          439 IMKG--YLNNPAATAETI---DKDGWLHTGDIGL  467 (979)
T ss_dssp             SCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             cccc--ccCChhhhhhhc---cCCCcEEcCCEEE
Confidence            9999  999999999977   4578999999874

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1e-61  Score=476.55  Aligned_cols=377  Identities=27%  Similarity=0.368  Sum_probs=315.8

Q ss_pred             HHHHhhcccCCCceeeeec-CCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEec
Q 013850           31 HFLFRNSASYSSKLALIDA-DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA  109 (435)
Q Consensus        31 ~~l~~~~~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i  109 (435)
                      ++|.+.++++|+++|+... ..++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            5678888999999988742 236899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      ++.++.+++.++++.++++++|+++.....+....    .....+..+             ....+.+......  ....
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~  148 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD-------------GRGSLTDAAAGAS--EAFA  148 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTT-------------SCSHHHHHHHTSC--SCCC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCC-------------cccccchhhhcCC--CCcC
Confidence            99999999999999999999999987654332221    111111111             0011222221111  2333


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||+|.++|+++.+........+.+..  +|++++.+|++|.+|+...++.++..|++++
T Consensus       149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~  226 (503)
T 4fuq_A          149 TIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMI  226 (503)
T ss_dssp             CCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred             cCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCC--CCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence            45667899999999999999999999999999998777666555543  3999999999999997656788999999999


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcc
Q 013850          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT  345 (435)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~t  345 (435)
                      +.+.+++..+++.++  ++|++.++|+++..|++........+++||.+++||+++++++.++|.+.++ .++++.||+|
T Consensus       227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~T  303 (503)
T 4fuq_A          227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMT  303 (503)
T ss_dssp             ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECCEET
T ss_pred             EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccceEccc
Confidence            999999999999998  8999999999999999988777778899999999999999999999999987 9999999999


Q ss_pred             cccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCc
Q 013850          346 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  425 (435)
Q Consensus       346 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~  425 (435)
                      |++.......  +.....+++|+|+++++++|+|+++++++++|+.|||+++|++++.|  ||++|+.|.+.|   ..++
T Consensus       304 E~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f---~~~g  376 (503)
T 4fuq_A          304 ETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKG--YWRMPEKTKSEF---RDDG  376 (503)
T ss_dssp             TTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHTB---CTTS
T ss_pred             ccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhh--hcCChhhhHhhh---CCCC
Confidence            9987654332  22566789999999999999998899999999999999999999999  999999999987   3578


Q ss_pred             ceecCCCCC
Q 013850          426 FIRGKDQQT  434 (435)
Q Consensus       426 ~~~tgD~~~  434 (435)
                      ||+|||+++
T Consensus       377 ~~~TGDl~~  385 (503)
T 4fuq_A          377 FFITGDLGK  385 (503)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEcceeEE
Confidence            999999874

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.3e-61  Score=480.28  Aligned_cols=384  Identities=22%  Similarity=0.292  Sum_probs=320.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~  107 (544)
T 3o83_A           30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV  107 (544)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            79999999999999999999987  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhhcC--CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +|+++.++.+++.++++.++++++|++....        ..+....  ...++.....           .....+.++..
T Consensus       108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  176 (544)
T 3o83_A          108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-----------ATDFGLLDWIE  176 (544)
T ss_dssp             EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-----------TTSEEHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-----------ccccchhhhhh
Confidence            9999999999999999999999999987543        2222221  1222222110           01112333333


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~  255 (435)
                      .... .........++++++|+|||||||.||+|.++|+++.+.+........+..  +|++++.+|++|.+++.. .++
T Consensus       177 ~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~~~~~~~~~  253 (544)
T 3o83_A          177 TPAE-TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNS--NTRLLCALPAPHNFMLSSPGAL  253 (544)
T ss_dssp             SCCS-SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCTTSHHHHHSSHHH
T ss_pred             cccc-cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCC--CCeEEEecCcceEeecchHHHH
Confidence            2221 122224567899999999999999999999999999998877666555533  399999999999998864 488


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++ 
T Consensus       254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-  332 (544)
T 3o83_A          254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-  332 (544)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-
T ss_pred             HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-
Confidence            9999999999999999999999999999999999999999999887766667899999999999999999999999996 


Q ss_pred             CeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccc
Q 013850          336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT  414 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~  414 (435)
                      +++++.||+||++....... ........++|+|+ ++++++|+| ++++++++|++|||+++||+++.|  ||++|+.|
T Consensus       333 ~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t  408 (544)
T 3o83_A          333 CKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCG--YYQSPEHN  408 (544)
T ss_dssp             SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSC--CTTCHHHH
T ss_pred             CcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchh--hcCChhhh
Confidence            99999999999875443322 21133457899996 899999999 799999999999999999999999  99999999


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.|   ..++||+|||+++
T Consensus       409 ~~~f---~~~g~~~TGDlg~  425 (544)
T 3o83_A          409 SQVF---DEDNYYYSGDLVQ  425 (544)
T ss_dssp             HHHB---CTTCCEEEEEEEE
T ss_pred             hhhC---CCCCCeEcCCEEE
Confidence            9987   3578999999874

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.6e-61  Score=476.84  Aligned_cols=380  Identities=18%  Similarity=0.234  Sum_probs=319.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +|+.++|.++++++|+++|+++.+  +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~   78 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRD--AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY   78 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETT--EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCC--ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            579999999999999999999874  899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++.++.+++.++++.++++++|++......    .....++..                ..+.++..........+.
T Consensus        79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~  138 (512)
T 3fce_A           79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVSE----------------DNLKDIFFTHKGNTPNPE  138 (512)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEET----------------HHHHHHHHHTTTCCCCGG
T ss_pred             EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceech----------------hhhhhhcccccccCCCcc
Confidence            999999999999999999999999997543210    001111110                112222222221122234


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||+|.++|+++.+..........+..  +|++++.+|++|..++. .++.++..|+++++
T Consensus       139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~  215 (512)
T 3fce_A          139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT--GQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWA  215 (512)
T ss_dssp             GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCS--SCEEEECSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred             ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCC--CCEEEEeCCccHhHHHH-HHHHHHhCCCEEEE
Confidence            5567899999999999999999999999999998777666555533  39999999999999985 78999999999999


Q ss_pred             cCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      .+.   +++..+++.++++++|++.++|+++..++.........+++||.+++||+++++++.+++.+.|+++++++.||
T Consensus       216 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG  295 (512)
T 3fce_A          216 IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYG  295 (512)
T ss_dssp             CCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcc
Confidence            976   68999999999999999999999999999888777788999999999999999999999999998799999999


Q ss_pred             cccccccccccCCCCC---CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850          344 MTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  420 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~  420 (435)
                      +||+++.++.......   ..+..++|+|+++++++|+| ++++++++|+.|||+++||+++.|  ||++|+.|.+.|..
T Consensus       296 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~  372 (512)
T 3fce_A          296 PTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVG--YLGSPELTEKAFTM  372 (512)
T ss_dssp             CGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSC--BTTCHHHHHHHEEE
T ss_pred             cChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChh--hcCCchhhhhcccc
Confidence            9999887664332211   23567899999999999999 689999999999999999999999  99999999998854


Q ss_pred             cccCcceecCCCCC
Q 013850          421 EHTDSFIRGKDQQT  434 (435)
Q Consensus       421 ~~~~~~~~tgD~~~  434 (435)
                      .+.++||+|||+++
T Consensus       373 ~~~~~~~~TGDlg~  386 (512)
T 3fce_A          373 IDGERAYKTGDAGY  386 (512)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             CCCCEEEeCCceEE
Confidence            55678999999864

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4.9e-61  Score=478.60  Aligned_cols=392  Identities=22%  Similarity=0.282  Sum_probs=322.0

Q ss_pred             CCCCCCCCCchH-HHHHhhcccCCCceeeeecC---CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH
Q 013850           19 LVLPSDPSFSMV-HFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI   94 (435)
Q Consensus        19 ~~~~~~~~~tl~-~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~   94 (435)
                      ...|..  +|+. ++|.++++++|+++|++..+   .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++
T Consensus        49 ~~~~~~--~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~  126 (580)
T 3etc_A           49 ILVPEN--FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY  126 (580)
T ss_dssp             BCCCSS--CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred             CCCccc--chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence            344544  7777 99999999999999998632   23689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH--HHHhhc----C-C-CcEEeccCCcccccccccccc
Q 013850           95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDL----N-L-PAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus        95 ~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++.+..  ..+...    . . ..++....         ....
T Consensus       127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  197 (580)
T 3etc_A          127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG---------DVLE  197 (580)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS---------SCCT
T ss_pred             HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC---------cccc
Confidence            9999999999999999999999999999999999999987654  333222    1 1 12222211         1233


Q ss_pred             cccchhhhhhhcCCCCCCCC--CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchH
Q 013850          167 KIVSFHDLIELSGSVTDIPD--VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM  244 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l  244 (435)
                      .+..+.+.+.........+.  ....++++++|+|||||||.||+|.++|.++............+  ..++++++..|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  275 (580)
T 3etc_A          198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV--EDDGLHYTVADS  275 (580)
T ss_dssp             TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCC--CTTCEEEECCCT
T ss_pred             ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCC--CCCceEEEeCCh
Confidence            45566666655442111111  35678999999999999999999999999887765443222222  333999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEec--CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~--~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~  322 (435)
                      +|..+.+..++.++..|+++++.  ..+++..+++.++++++|+++++|+++..|.+. .....++++||.+++||++++
T Consensus       276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~  354 (580)
T 3etc_A          276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLN  354 (580)
T ss_dssp             TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCC
Confidence            99988876688899999999987  578999999999999999999999999999886 344567899999999999999


Q ss_pred             HHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC----
Q 013850          323 KELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG----  398 (435)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g----  398 (435)
                      +++.++|++.++ +++++.||+||++..++.....  ..+.+++|+|+++++++|+| ++|+++++|+.|||+++|    
T Consensus       355 ~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~  430 (580)
T 3etc_A          355 PEVFNRFLEFTG-IKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGK  430 (580)
T ss_dssp             HHHHHHHHHHHS-CCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCC
T ss_pred             HHHHHHHHHHhC-CeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCC
Confidence            999999999886 9999999999998766654433  56788999999999999999 579999999999999997    


Q ss_pred             -CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 -PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 -~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                       ++++.|  ||++|+.|.+.|    .+|||+|||+++
T Consensus       431 ~~~~~~g--Y~~~p~~t~~~f----~~gwy~TGDlg~  461 (580)
T 3etc_A          431 PVGLFVH--YGKDPERTEETW----HDGYYHTGDMAW  461 (580)
T ss_dssp             CTTCCCE--ETTCHHHHHHHE----ETTEEEEEEEEE
T ss_pred             CCeeecc--ccCCHhHHHhhc----CCCEEecCcEEE
Confidence             789999  999999999988    478999999874

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.2e-61  Score=476.99  Aligned_cols=380  Identities=23%  Similarity=0.288  Sum_probs=317.2

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~  102 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence            68999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhhc-C-CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDL-N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +|++|.++.+++.++++.++++++|+++...        ..+... . .+.+++..+.              ..+.++..
T Consensus       103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~  168 (539)
T 1mdb_A          103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--------------EEFLPLED  168 (539)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--------------TTSEEGGG
T ss_pred             ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--------------cchhhhhh
Confidence            9999999999999999999999999987532        122111 1 2222222110              01222222


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~  255 (435)
                      ...  .........++++++|+|||||||.||+|.++|+++.+..........+..  +|++++.+|++|.+++.. .++
T Consensus       169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~~~~~~~~~  244 (539)
T 1mdb_A          169 LHT--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVL  244 (539)
T ss_dssp             CCC--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT--TCEEEECSCTTSHHHHHSSHHH
T ss_pred             ccc--cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC--CCEEEEeecccccchhhHHHHH
Confidence            111  111234567899999999999999999999999999988776655554433  399999999999999864 588


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++ 
T Consensus       245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-  323 (539)
T 1mdb_A          245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-  323 (539)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred             HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence            9999999999999999999999999999999999999999999877666778999999999999999999999999996 


Q ss_pred             CeeecCcCcccccccccccCCCCCCcCCCCcccccCC-cEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccc
Q 013850          336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT  414 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~  414 (435)
                      +++++.||+||++.... ..........+++|+|+++ .+++|+| ++++++++|+.|||+++||+++.|  ||++|+.|
T Consensus       324 ~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t  399 (539)
T 1mdb_A          324 CTLQQVFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRG--YYKAEEHN  399 (539)
T ss_dssp             SEEEEEEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSS--CTTCHHHH
T ss_pred             CcEEEEEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchh--hcCChhhh
Confidence            99999999999653332 2211112345789999976 5899999 689999999999999999999999  99999999


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.|   ..+|||+|||+++
T Consensus       400 ~~~f---~~~g~~~TGDlg~  416 (539)
T 1mdb_A          400 AASF---TEDGFYRTGDIVR  416 (539)
T ss_dssp             HHHB---CTTSCEEEEEEEE
T ss_pred             hhhc---cCCCCeecCceEE
Confidence            9987   2578999999874

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.6e-60  Score=468.67  Aligned_cols=375  Identities=22%  Similarity=0.290  Sum_probs=311.4

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++++|+++|+++.+.++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            47899999999999999999987545899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEE--ccccHHHH-hhcCCCcEEeccCCcccccccccccccccchhhhhhhcC---C
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVIT--VPELWDKV-KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---S  180 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  180 (435)
                      +|+++.++.+++.++++.++++++|+  +......+ .... ...++                   .++++.....   .
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~  141 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARII-------------------FLGDLVRDGEPYSY  141 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC-CCEEE-------------------EGGGTEETTEECCC
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc-cceeE-------------------EecchhhcCccccc
Confidence            99999999999999999999999999  77665554 3221 11111                   1222221110   0


Q ss_pred             CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (435)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~  260 (435)
                      ..........++++++|+|||||||.||+|.++|+++.+..........+.....+++++.+|++|.+++...++.++..
T Consensus       142 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~  221 (504)
T 1t5h_X          142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL  221 (504)
T ss_dssp             SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHT
T ss_pred             CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHc
Confidence            01111244578999999999999999999999999999887766554444223449999999999999986578899999


Q ss_pred             CcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCee
Q 013850          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (435)
Q Consensus       261 G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~  338 (435)
                      |+++++.+.+++..+++.++++++|++.++|+++..|.+...  ....++++||.+++||+++++++.++|++.++ .++
T Consensus       222 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~  300 (504)
T 1t5h_X          222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEK  300 (504)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEE
T ss_pred             CceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-cce
Confidence            999999999999999999999999999999999999998752  24457899999999999999999999999997 999


Q ss_pred             ecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCC---ccCCCCCceeEEEe-CCCccccccccCCcccc
Q 013850          339 FQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL---KPLPPNQLGEIWVR-GPNVTPGIVYINFFVFT  414 (435)
Q Consensus       339 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gei~v~-g~~~~~g~~y~~~~~~~  414 (435)
                      ++.||+||++. .....    ..+.+++|.|.++++++|+|. ++   +++++|+.|||+++ |++++.|  ||++|+.|
T Consensus       301 ~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~G--Y~~~~~~t  372 (504)
T 1t5h_X          301 VNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVG--YLNQPQAT  372 (504)
T ss_dssp             EEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCC--BTTCHHHH
T ss_pred             eeeeccccccc-ccccc----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeece--ecCCchhh
Confidence            99999999832 22221    345678999999999999995 55   89999999999999 9999999  99999999


Q ss_pred             cccccccccCcceecCCCCC
Q 013850          415 LFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       415 ~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .+.|    .+|||+|||+++
T Consensus       373 ~~~f----~~g~~~TGDlg~  388 (504)
T 1t5h_X          373 AEKL----QDGWYRTSDVAV  388 (504)
T ss_dssp             HHHE----ETTEEEEEEEEE
T ss_pred             hhhh----cCCccccCcEEE
Confidence            9988    478999999873

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.4e-60  Score=469.82  Aligned_cols=385  Identities=23%  Similarity=0.326  Sum_probs=316.3

Q ss_pred             CchHHHHHhhcccCCCceeeeec--CCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDA--DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      .|+.++|.++++++|+++|++..  +.++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga   97 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA   97 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            68999999999999999999852  2247899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (435)
Q Consensus       105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (435)
                      +++|+++.++.+++.++++.++++++|++++....+....     .+.+++....         .......+++++....
T Consensus        98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  168 (541)
T 1v25_A           98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYEEALGEEA  168 (541)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHHHHCCSCC
T ss_pred             EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCC---------CCcccccHHHHhhccC
Confidence            9999999999999999999999999999988766554432     1122222111         0112234555443222


Q ss_pred             CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~  259 (435)
                        .   .....++++++|+|||||||.||+|.++|+++............+....+|++++.+|++|.+++. .++.++.
T Consensus       169 --~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~  242 (541)
T 1v25_A          169 --D---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATL  242 (541)
T ss_dssp             --C---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHH
T ss_pred             --C---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHh
Confidence              1   134567899999999999999999999999998765432111122223349999999999999984 6788899


Q ss_pred             cCcEEEecCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCee
Q 013850          260 KGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (435)
Q Consensus       260 ~G~~i~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~  338 (435)
                      .|+++++.+. +++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.++| +.++ +++
T Consensus       243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~  320 (541)
T 1v25_A          243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG-VEV  320 (541)
T ss_dssp             HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT-CEE
T ss_pred             cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC-Cce
Confidence            9999999864 699999999999999999999999999998766666678999999999999999999999 6675 999


Q ss_pred             ecCcCcccccccccccCCCCC---------CcCCCCcccccCCcEEEEEeCCCCccCCC--CCceeEEEeCCCccccccc
Q 013850          339 FQGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIVY  407 (435)
Q Consensus       339 ~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gei~v~g~~~~~g~~y  407 (435)
                      ++.||+||++.+++.......         ....+++|+|+++++++|+| +++++++.  ++.|||+++||+++.|  |
T Consensus       321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~G--Y  397 (541)
T 1v25_A          321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG--Y  397 (541)
T ss_dssp             EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSS--C
T ss_pred             eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhcc--c
Confidence            999999999877665433210         12457899999999999999 57888884  3689999999999999  9


Q ss_pred             cCCcccccccccccccCcceecCCCCC
Q 013850          408 INFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |++|+.|.+.|   ..+|||+|||+++
T Consensus       398 ~~~p~~t~~~f---~~~g~~~TGDlg~  421 (541)
T 1v25_A          398 YGNEEATRSAL---TPDGFFRTGDIAV  421 (541)
T ss_dssp             BTCHHHHHTTB---CTTSCEEEEEEEE
T ss_pred             cCChhhhhhhc---cCCCCeEcCCEEE
Confidence            99999999987   3478999999874

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.2e-60  Score=468.45  Aligned_cols=378  Identities=20%  Similarity=0.271  Sum_probs=318.9

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      +|+.++|.++++++|+++|+++.  ++++||+||.++++++|+.|++. |.++||+|+++++|++++++++|||+++|++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~   78 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP   78 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence            57899999999999999999987  48999999999999999999874 8889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      ++|+++.++.+++.++++.++++++|+++......  .                   ........+.++...... ....
T Consensus        79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~-~~~~  136 (511)
T 3e7w_A           79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA--V-------------------GQQIQTVSAEELLENEGG-SVSQ  136 (511)
T ss_dssp             EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC--C-------------------CCSSCEEEHHHHHTSCSC-CCCG
T ss_pred             EEecCCCChHHHHHHHHHhCCCCEEEecccccchh--c-------------------ccccceecHhhhhccccC-Cccc
Confidence            99999999999999999999999999975432110  0                   011122334444433221 2222


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||+|.++|+++.+...+......+..  +|++++.+|++|..++. .++.++..|++++
T Consensus       137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  213 (511)
T 3e7w_A          137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIFLNQAPFSFDLSVM-DLYPCLQSGGTLH  213 (511)
T ss_dssp             GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTT--TCEEEECSCTTSTHHHH-HHHHHHHTTCEEE
T ss_pred             cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCc--cceEEEeCCccHHHHHH-HHHHHHhcCCEEE
Confidence            34567899999999999999999999999999998777665555533  39999999999999984 7899999999999


Q ss_pred             ecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       266 ~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +.+.   +++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+++++.|+++++++.|
T Consensus       214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y  293 (511)
T 3e7w_A          214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTY  293 (511)
T ss_dssp             ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECC
T ss_pred             EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCc
Confidence            9875   6899999999999999999999999999998877777899999999999999999999999999879999999


Q ss_pred             CcccccccccccCCCC---CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          343 GMTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      |+||+++.++......   ......++|+|+++++++|+| ++|+++++|+.|||+++|++++.|  ||++|+.|++.|.
T Consensus       294 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~  370 (511)
T 3e7w_A          294 GPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRG--YLGEPELTEKAFF  370 (511)
T ss_dssp             CCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHHEE
T ss_pred             ccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChh--hCCCcccchhhhc
Confidence            9999987766432221   133556799999999999999 579999999999999999999999  9999999999872


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                      -.+.+.||+|||+++
T Consensus       371 ~~~g~~~~~TGDlg~  385 (511)
T 3e7w_A          371 SHEGQWAYRTGDAGF  385 (511)
T ss_dssp             ESSSSEEEEEEEEEE
T ss_pred             CCCCCEEEeCCCeEE
Confidence            112223799999864

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=6.6e-60  Score=467.13  Aligned_cols=383  Identities=21%  Similarity=0.320  Sum_probs=308.9

Q ss_pred             chHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEE
Q 013850           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v  107 (435)
                      ++.++|.++++ +|+++|+++.  ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++
T Consensus        25 ~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  101 (529)
T 2v7b_A           25 FAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV  101 (529)
T ss_dssp             HHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence            37888888888 9999999987  48999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----C-CcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      |+++.++.+++.++++.++++++|+++.....+....     . ..+++.....       ........++++.....  
T Consensus       102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--  172 (529)
T 2v7b_A          102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE-------SEPRLAPLFEELIDAAA--  172 (529)
T ss_dssp             ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSC--
T ss_pred             ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc-------cccccccchhhhhccCC--
Confidence            9999999999999999999999999988766554331     1 2222211100       00011224555554322  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHH-HHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~  260 (435)
                      .........++++++|+|||||||.||+|.++|+++ ............+  ..+|++++.+|++|.+++...++.++..
T Consensus       173 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~  250 (529)
T 2v7b_A          173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI--AENDVVFSAAKLFFAYGLGNGLTFPLSV  250 (529)
T ss_dssp             CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC--CTTCEEEESSCTTSHHHHHHHTHHHHHH
T ss_pred             CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC--CCCcEEEEeecHHHHHHHHHHHHHHHhc
Confidence            222334567899999999999999999999999998 4443221111222  3349999999999999997667889999


Q ss_pred             CcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          261 GNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       261 G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      |+++++. +.+++..+++.++++++|++.++|+++..|++..........+||.+++||+++++++.+++++.++ ++++
T Consensus       251 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i~  329 (529)
T 2v7b_A          251 GATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG-CEIL  329 (529)
T ss_dssp             TCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS-CCEE
T ss_pred             CcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC-Ccee
Confidence            9999988 6789999999999999999999999999999875444331348999999999999999999999886 9999


Q ss_pred             cCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      +.||+||++.++......  ..+.+++|+|+++++++|+| ++++++++|+.|||+++|++++.|  ||++++.|.+.| 
T Consensus       330 ~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~~f-  403 (529)
T 2v7b_A          330 DGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM--YWNNREKSRATF-  403 (529)
T ss_dssp             EEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCC--BTTCHHHHHHHE-
T ss_pred             eeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccc--cCCChHHHHHhh-
Confidence            999999997665544333  35678999999999999999 689999999999999999999999  999999999988 


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                         .++||+|||+++
T Consensus       404 ---~~~~~~TGDl~~  415 (529)
T 2v7b_A          404 ---LGEWIRSGDKYC  415 (529)
T ss_dssp             ---ETTEEEEEEEEE
T ss_pred             ---hcCCcccCceEE
Confidence               478999999763

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=5.6e-60  Score=465.46  Aligned_cols=375  Identities=24%  Similarity=0.334  Sum_probs=310.8

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      +.|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~   82 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI   82 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            489999999999999999999987  589999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (435)
                      ++|+++.++.+++.++++.++++++|++.+....+....     ...++...+             ....+.++......
T Consensus        83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  149 (509)
T 3ivr_A           83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-------------GSGPFAPFKDLASD  149 (509)
T ss_dssp             EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-------------CCSSCEEGGGTCCC
T ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-------------CCcChhhHhhccCC
Confidence            999999999999999999999999999988766532221     112221111             11122223221111


Q ss_pred             CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (435)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~  260 (435)
                       .........++++++|+|||||||.||+|.++|+++.+..........+...  |++++.+|++|.+++...+...+..
T Consensus       150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~~~~  226 (509)
T 3ivr_A          150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEA--DVNLGMLPLFHVTGLGLMLTLQQAG  226 (509)
T ss_dssp             -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred             -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCC--cEEEEeCCCcchhHHHHHHHHHHhC
Confidence             2233456788999999999999999999999999999988776665555333  9999999999999996444444554


Q ss_pred             CcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeec
Q 013850          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (435)
Q Consensus       261 G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~  340 (435)
                      |+++ +...+++..+++.++++++|++.++|+++..|++..  ....+++||.++.+|++   ++.+.+.+.++++++++
T Consensus       227 g~~~-~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~  300 (509)
T 3ivr_A          227 GASV-IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA  300 (509)
T ss_dssp             CEEE-ECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE
T ss_pred             CcEE-EecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEc
Confidence            5544 445889999999999999999999999999999876  34568899999999987   88999999997799999


Q ss_pred             CcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850          341 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  420 (435)
Q Consensus       341 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~  420 (435)
                      .||+||++++++.....   .....+|+|+++++++|+| ++++++++|+.|||+++|++++.|  ||++|+.|.+.|  
T Consensus       301 ~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~~f--  372 (509)
T 3ivr_A          301 TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAF--  372 (509)
T ss_dssp             EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCE--ETTCHHHHHHHT--
T ss_pred             ccCccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCcccc--ccCCHHHhHHHh--
Confidence            99999998876654332   2334599999999999999 579999999999999999999999  999999999988  


Q ss_pred             cccCcceecCCCCC
Q 013850          421 EHTDSFIRGKDQQT  434 (435)
Q Consensus       421 ~~~~~~~~tgD~~~  434 (435)
                        .++||+|||+++
T Consensus       373 --~~g~~~TGDl~~  384 (509)
T 3ivr_A          373 --RNGWHHTGDMGR  384 (509)
T ss_dssp             --GGGSEEEEEEEE
T ss_pred             --hcCCcccccEEE
Confidence              478999999874

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=3.2e-60  Score=468.76  Aligned_cols=379  Identities=18%  Similarity=0.194  Sum_probs=317.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.+.|.++++++|+++|+.+.  ++.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY   81 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  5899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhc-CCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS-GSVTDIP  185 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  185 (435)
                      +|+++.++.+++.++++.++++++|++++....+...    .                   ...+.++.... .......
T Consensus        82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~~~~~~~~  138 (521)
T 3l8c_A           82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI----S-------------------LVSLSEIESAKLAEMPYER  138 (521)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS----E-------------------EEEHHHHHHHHHHTCCCCC
T ss_pred             EecCccccHHHHHHHHHhCCCCEEEecCccccccccC----c-------------------ccchhhhhhcccccCCccc
Confidence            9999999999999999999999999987653221110    0                   11111211110 0012233


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||+|.++|+++.+...+......+.....+++++..|++|..++. .++.++..|++++
T Consensus       139 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~  217 (521)
T 3l8c_A          139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLF  217 (521)
T ss_dssp             SSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEE
T ss_pred             CCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEE
Confidence            455678999999999999999999999999999876665544333334449999999999998884 7888999999999


Q ss_pred             ecCCC---CHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          266 SMGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       266 ~~~~~---~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +.+..   ++..+++.+.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++++++++.|
T Consensus       218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y  297 (521)
T 3l8c_A          218 ALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY  297 (521)
T ss_dssp             ECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             EcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence            98764   899999999999999999999999999988777777899999999999999999999999999879999999


Q ss_pred             CcccccccccccCCCCC---CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850          343 GMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      |+||+++.++.......   .....++|+|+++++++|+| ++++++++|+.|||+++||+++.|  ||++|+.|++.|.
T Consensus       298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~  374 (521)
T 3l8c_A          298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKG--YLNNPEKTAEAFF  374 (521)
T ss_dssp             CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSC--BTTCHHHHHHHEE
T ss_pred             CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChh--hcCCchHhhccCc
Confidence            99999877664322211   23456899999999999999 689999999999999999999999  9999999999874


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                      ..+.++||+|||+++
T Consensus       375 ~~~~~~~~~TGDlg~  389 (521)
T 3l8c_A          375 TFKGQPAYHTGDIGS  389 (521)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             CCCCceeeeCCCEEE
Confidence            345578999999874

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.3e-59  Score=474.62  Aligned_cols=396  Identities=21%  Similarity=0.256  Sum_probs=318.6

Q ss_pred             chHHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850           28 SMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G  103 (435)
                      ++.++|.++++++|+++|+++..    .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus        77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G  156 (652)
T 1pg4_A           77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG  156 (652)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            45677888889999999999632    23789999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhh----c---CCCcEEeccCCccccccccccccc
Q 013850          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKD----L---NLPAVLLGSKDKVSSSGLISRSSK  167 (435)
Q Consensus       104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~  167 (435)
                      ++++|+++.++.+++.+++++++++++|+++....         .+..    .   ....+++....... ..  .....
T Consensus       157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-~~--~~~~~  233 (652)
T 1pg4_A          157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD-ID--WQEGR  233 (652)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC-CC--CCBTT
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCc-cc--ccCCC
Confidence            99999999999999999999999999999876421         1111    1   11222222211000 00  00112


Q ss_pred             ccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHH-HhhhhhccCCCcEEEecchHHH
Q 013850          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~d~~l~~~~l~~  246 (435)
                      ...|++++....  .........++++++|+|||||||.||||+++|++++...... ...+.+  ..+|++++.+|++|
T Consensus       234 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~  309 (652)
T 1pg4_A          234 DLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY--HPGDIYWCTADVGW  309 (652)
T ss_dssp             EEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC--CTTCEEEECSCTTS
T ss_pred             ceeHHHHHhhcC--CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC--CCCCEEEEccCCee
Confidence            245666665333  2233445678999999999999999999999999987765332 222333  33499999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCC
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAP  320 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~  320 (435)
                      +++..+.++.+|..|+++++.+.    +++..+++.++++++|+++++|+++..|.+...  ....++++||.+++||++
T Consensus       310 ~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~  389 (652)
T 1pg4_A          310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP  389 (652)
T ss_dssp             HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred             eechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence            99986678899999999999864    589999999999999999999999999998754  345678999999999999


Q ss_pred             CcHHHHHHHHhhCC--CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC
Q 013850          321 LGKELMEDCQKNIP--GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG  398 (435)
Q Consensus       321 l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g  398 (435)
                      +++++.+++.+.++  ++++++.||+||+++.+....+.....+.+++|+|++|++++|+| ++|++++.|+.|||+++|
T Consensus       390 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g  468 (652)
T 1pg4_A          390 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD  468 (652)
T ss_dssp             CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred             CCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence            99999999999886  389999999999997766654433345778999999999999999 589999999999999999


Q ss_pred             --CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 --PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 --~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                        |+++.|  ||++++.+.+.+ +-..+|||+|||+++
T Consensus       469 ~~p~~~~g--Y~~~~e~~~~~~-~~~~~g~y~TGDlg~  503 (652)
T 1pg4_A          469 SWPGQART--LFGDHERFEQTY-FSTFKNMYFSGDGAR  503 (652)
T ss_dssp             CCTTCCCE--ETTCHHHHHHHH-HSSSTTSEEEEEEEE
T ss_pred             CCCchhhh--hcCCHHHHHhhh-hhcCCCEEECCcEEE
Confidence              799999  999999887754 112367999999874

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.3e-59  Score=465.94  Aligned_cols=382  Identities=19%  Similarity=0.246  Sum_probs=315.9

Q ss_pred             Cc-hHHHHHhhccc-----CCCceeeeecC-C--CcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHH
Q 013850           27 FS-MVHFLFRNSAS-----YSSKLALIDAD-S--DESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICF   96 (435)
Q Consensus        27 ~t-l~~~l~~~~~~-----~p~~~a~~~~~-~--~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~   96 (435)
                      .+ +.++|.+++++     +|+++|+++.+ .  ++.+||+||.++++++|+.|++. |+++||+|+|+++|++++++++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~  116 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI  116 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred             ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence            44 46888888888     99999998742 1  37899999999999999999998 9999999999999999999999


Q ss_pred             HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccch
Q 013850           97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSF  171 (435)
Q Consensus        97 lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (435)
                      |||+++|++++|+++.++.+++.++++.++++++|++++....+....     .+.+++..+.         .......+
T Consensus       117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  187 (570)
T 3c5e_A          117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK---------SCDGWLNF  187 (570)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS---------CCTTSEEH
T ss_pred             HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc---------CccccccH
Confidence            999999999999999999999999999999999999988776654421     1122222110         11123456


Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHH--HHHHHHhhhhhccCCCcEEEecchHHHHHH
Q 013850          172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFG  249 (435)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g  249 (435)
                      ++++....  .........++++++|+|||||||.||+|.++|+ ++.  ..... ....+  ..+|++++.+|++|.++
T Consensus       188 ~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~--~~~d~~~~~~p~~~~~~  261 (570)
T 3c5e_A          188 KKLLNEAS--TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL--QASDIMWTISDTGWILN  261 (570)
T ss_dssp             HHHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC--CTTCEEEECCCTTSHHH
T ss_pred             HHHhhccc--ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC--CCCceEEEcCchHHHHH
Confidence            66554433  2223345678999999999999999999999999 444  22221 22222  33499999999999999


Q ss_pred             HHHHHHhhhhcCcEEEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHH
Q 013850          250 LSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME  327 (435)
Q Consensus       250 ~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~  327 (435)
                      +...++.++..|+++++.+  .+++..+++.++++++|++.++|+++..|.+.. ....++++||.+++||+++++++.+
T Consensus       262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~  340 (570)
T 3c5e_A          262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLE  340 (570)
T ss_dssp             HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHH
T ss_pred             HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHH
Confidence            8767889999999999986  689999999999999999999999999999863 3445688999999999999999999


Q ss_pred             HHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEe-----CCCcc
Q 013850          328 DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR-----GPNVT  402 (435)
Q Consensus       328 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~-----g~~~~  402 (435)
                      +|++.++ +++++.||+||++..++.....  ..+.+++|+|+++++++|+| ++++++++|+.|||+++     |++++
T Consensus       341 ~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~  416 (570)
T 3c5e_A          341 NWRAQTG-LDIRESYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIF  416 (570)
T ss_dssp             HHHHHHS-CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCC
T ss_pred             HHHHHhC-CchhhccchhhcccceecCccc--ccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhh
Confidence            9999885 9999999999998665544322  45678999999999999999 57999999999999999     99999


Q ss_pred             ccccccCCcccccccccccccCcceecCCCCC
Q 013850          403 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       403 ~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .|  ||++|+.|.+.|    .++||+|||+++
T Consensus       417 ~G--Y~~~~~~t~~~f----~~~~~~TGDlg~  442 (570)
T 3c5e_A          417 SG--YVDNPDKTAANI----RGDFWLLGDRGI  442 (570)
T ss_dssp             CE--ETTCHHHHHHTE----ETTEEEEEEEEE
T ss_pred             cc--ccCChhHhhhhh----cCCccccceeEE
Confidence            99  999999999988    478999999864

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.1e-59  Score=471.34  Aligned_cols=371  Identities=16%  Similarity=0.149  Sum_probs=307.1

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      +.|+.++|.++++++|+++|+++.+  +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus        26 ~~tl~~~~~~~a~~~Pd~~Av~~~~--~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~  103 (620)
T 4dg8_A           26 HPTVVARFSEMAALHPHREAIRDRF--GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH  103 (620)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEETT--EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcCC--CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence            3799999999999999999999874  89999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      ++|++|.++.+++.++++.+++++++++..........  ..                     ..+...   ........
T Consensus       104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~---------------------~~~~~~---~~~~~~~~  157 (620)
T 4dg8_A          104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL--PC---------------------VPVRHL---PAAPASVA  157 (620)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS--CE---------------------EEGGGC---CCCCCCSS
T ss_pred             EEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCC--ce---------------------eeeccC---CcCCcccc
Confidence            99999999999999999999999999765432211100  00                     001100   01012222


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||||+++|+++.+.... .....+  ..++++++.+|++|..++. .++.++..|++++
T Consensus       158 ~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  233 (620)
T 4dg8_A          158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAF--APQMRFLVNSPLSFDAATL-EIWGALLNGGCCV  233 (620)
T ss_dssp             CCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCC--CCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence            34457899999999999999999999999999776443 122222  3349999999999999985 7899999999999


Q ss_pred             ecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          266 SMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       266 ~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      +.+  .+++..+++.++++++|++.++|+++..|.+..   ...+++||.+++|||++++++.+++.+.+++++++|.||
T Consensus       234 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG  310 (620)
T 4dg8_A          234 LNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG  310 (620)
T ss_dssp             ECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred             eCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence            964  579999999999999999999999999998753   346889999999999999999999999888899999999


Q ss_pred             cccccccccccCC--CCCCcCCCCcccccCCcEEEEEeCCCCcc-CCCCCceeEEEeCCCccccccccCCccccccccc-
Q 013850          344 MTETCAPISLENP--LVGVRRSGSAGTLVAGVEAQIVSVDTLKP-LPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-  419 (435)
Q Consensus       344 ~tE~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~-  419 (435)
                      +||++..++....  ........++|+|+++++++|+|+ ++.+ ++.|++|||+|+|++++.|  ||++|+.|++.|. 
T Consensus       311 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~G--Y~~~p~~t~~~f~~  387 (620)
T 4dg8_A          311 PTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQG--YRNDAARTRASFVE  387 (620)
T ss_dssp             CGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSE--ETTCHHHHHHHEEE
T ss_pred             hhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccc--cCCChhhhhhhhcc
Confidence            9999877654322  222345678999999999999995 5555 8899999999999999999  9999999999882 


Q ss_pred             -ccccC--cceecCCCCC
Q 013850          420 -CEHTD--SFIRGKDQQT  434 (435)
Q Consensus       420 -~~~~~--~~~~tgD~~~  434 (435)
                       -+..+  +||+|||+++
T Consensus       388 ~p~~~~~~~~yrTGDl~~  405 (620)
T 4dg8_A          388 LPYRGRLLRAYRTGDRAR  405 (620)
T ss_dssp             EEETTEEEEEEEEEEEEE
T ss_pred             CCCCCCCceEEeCCCEEE
Confidence             11112  7999999874

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.2e-59  Score=465.40  Aligned_cols=379  Identities=18%  Similarity=0.241  Sum_probs=308.6

Q ss_pred             CCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHH
Q 013850           17 PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF   96 (435)
Q Consensus        17 ~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~   96 (435)
                      ....+|..  .|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus        31 ~~~~~~~~--~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  106 (563)
T 1amu_A           31 TKAEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI  106 (563)
T ss_dssp             CCCCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCCCC--CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            33444444  79999999999999999999986  489999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhh
Q 013850           97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus        97 lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      |||+++|++++|+++.++.+++.++++.++++++|++++....+........+......              .+.    
T Consensus       107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----  168 (563)
T 1amu_A          107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED--------------TIK----  168 (563)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS--------------TTT----
T ss_pred             HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecch--------------hhc----
Confidence            99999999999999999999999999999999999998876665544322111111100              000    


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHh
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~  256 (435)
                      ...  .........++++++|+|||||||.||||+++|+++.+..........+.  .+|++++.+|++|..++. .++.
T Consensus       169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~-~~~~  243 (563)
T 1amu_A          169 IRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT--EKDRIGQFASISFDASVW-EMFM  243 (563)
T ss_dssp             TSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCC--TTCEEEECSCTTSTHHHH-HHHH
T ss_pred             ccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCC--CCCEEEEeCCccHHHHHH-HHHH
Confidence            000  11122345678999999999999999999999999988766554444443  349999999999999885 7888


Q ss_pred             hhhcCcEEEecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhC
Q 013850          257 QLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (435)
Q Consensus       257 ~l~~G~~i~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  333 (435)
                      ++..|+++++.+.   +++..+++.++++++|++.++|+++..|...      .+++||.+++||+++++++.++|++. 
T Consensus       244 ~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~-  316 (563)
T 1amu_A          244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK-  316 (563)
T ss_dssp             HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT-
T ss_pred             HHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC-
Confidence            9999999999875   6899999999999999999999998877532      46799999999999999999999875 


Q ss_pred             CCCeeecCcCcccccccccccCCCC-CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcc
Q 013850          334 PGATIFQGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV  412 (435)
Q Consensus       334 ~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~  412 (435)
                        +++++.||+||++..++...... ...+..++|+|+++++++|+| +++++++.|+.|||+++|++++.|  ||++|+
T Consensus       317 --~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~pe  391 (563)
T 1amu_A          317 --VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARG--YWKRPE  391 (563)
T ss_dssp             --SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHH
T ss_pred             --CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChh--hCCCch
Confidence              89999999999987665433221 123567899999999999999 689999999999999999999999  999999


Q ss_pred             cccccc---cccccCcceecCCCCC
Q 013850          413 FTLFLW---GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       413 ~~~~~~---~~~~~~~~~~tgD~~~  434 (435)
                      .|.+.|   .+.+.++||+|||+++
T Consensus       392 ~t~~~f~~~~~~~g~~w~~TGDlg~  416 (563)
T 1amu_A          392 LTSQKFVDNPFVPGEKLYKTGDQAR  416 (563)
T ss_dssp             HHHHHEEECSSSTTSEEEEEEEEEE
T ss_pred             hhhhhcccCCCCCCCEEEecCCEEE
Confidence            999988   2223457999999874

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=9.6e-60  Score=469.49  Aligned_cols=372  Identities=18%  Similarity=0.240  Sum_probs=308.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        75 ~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  152 (570)
T 4gr5_A           75 ACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY  152 (570)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            79999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|+++.++.+++.++++.++++++|++......+...   ..+...+                   .......  .....
T Consensus       153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~--~~~~~  208 (570)
T 4gr5_A          153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT---TTLYVED-------------------EAASDAP--AGNLA  208 (570)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS---EEEECCC----------------------------CCCCC
T ss_pred             EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC---cceeeec-------------------ccccccc--ccccC
Confidence            9999999999999999999999999997654332211   1111100                   0000001  22233


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||+|+++|+++.+....   ........+|++++.+|++|..+. ..++.++..|+++++
T Consensus       209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~  284 (570)
T 4gr5_A          209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG---QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVL  284 (570)
T ss_dssp             CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS---CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEE
T ss_pred             CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh---hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEE
Confidence            4567899999999999999999999999999765432   111112334999999999987666 478889999999999


Q ss_pred             cC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850          267 MG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM  344 (435)
Q Consensus       267 ~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~  344 (435)
                      .+  .+++..+++.++++++|++.++|+++..|++...   ..+++||.+++||++++.++.+++.+.++++++++.||+
T Consensus       285 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~  361 (570)
T 4gr5_A          285 QSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGP  361 (570)
T ss_dssp             CSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred             cCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeech
Confidence            86  4689999999999999999999999999987643   358899999999999999999999999988999999999


Q ss_pred             ccccccccccCCCC--CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc--c
Q 013850          345 TETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--C  420 (435)
Q Consensus       345 tE~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--~  420 (435)
                      ||++++.+......  ......++|+|+++++++|+| ++++++++|++|||+|+|++++.|  ||++|+.|.+.|.  .
T Consensus       362 TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~~  438 (570)
T 4gr5_A          362 AESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHG--YVSRPALTAERFVADP  438 (570)
T ss_dssp             GGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHHHHHHHEEECT
T ss_pred             hhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchh--cCCCchhhhcccccCC
Confidence            99987766433221  133456799999999999999 689999999999999999999999  9999999999871  1


Q ss_pred             c---ccCcceecCCCCC
Q 013850          421 E---HTDSFIRGKDQQT  434 (435)
Q Consensus       421 ~---~~~~~~~tgD~~~  434 (435)
                      +   ..++||+|||+++
T Consensus       439 ~~~~~~~~w~~TGDlg~  455 (570)
T 4gr5_A          439 FAGPGGERMYRTGDLAR  455 (570)
T ss_dssp             TCCSSCCEEEEEEEEEE
T ss_pred             CCCCCCCEEEeCCCeEE
Confidence            1   2347999999874

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=4e-59  Score=471.25  Aligned_cols=398  Identities=21%  Similarity=0.260  Sum_probs=318.1

Q ss_pred             chHHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           28 SMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        28 tl~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      ++.++|.++++++|+++|++...    .++.+||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|||+++
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~  162 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI  162 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            46677888899999999999732    2478999999999999999999 999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhhcC-----CCcEEeccCCcccccccccccccc
Q 013850          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDLN-----LPAVLLGSKDKVSSSGLISRSSKI  168 (435)
Q Consensus       103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  168 (435)
                      |++++|+++.++.+++..+++++++++||+++....         .+....     .+.+++..........  ......
T Consensus       163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~--~~~~~~  240 (663)
T 1ry2_A          163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA--FHAPRD  240 (663)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC--CCSSSE
T ss_pred             CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc--cCCCcc
Confidence            999999999999999999999999999999876432         122111     1223322211000000  001122


Q ss_pred             cchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHH-hhhhhccCCCcEEEecchHHHH
Q 013850          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHV  247 (435)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~l~~~~l~~~  247 (435)
                      ..|.+++....  ...+.....++++++|+|||||||.||||+++|++++....... ....+  ..+|++++..|++|+
T Consensus       241 ~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~  316 (663)
T 1ry2_A          241 LDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT--HQEDVFFTAGDIGWI  316 (663)
T ss_dssp             EEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC--CSSCEEEECSCTTSH
T ss_pred             ccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC--CCCcEEEEcCCcHHh
Confidence            34666554332  22334556789999999999999999999999999876653322 22223  334999999999999


Q ss_pred             HHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCC
Q 013850          248 FGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPL  321 (435)
Q Consensus       248 ~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l  321 (435)
                      ++..+.++.+|..|+++++.+.    +++..+++.|+++++|+++++|++++.|.+...  ....++++||.+++||+++
T Consensus       317 ~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l  396 (663)
T 1ry2_A          317 TGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPI  396 (663)
T ss_dssp             HHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCC
T ss_pred             hhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCC
Confidence            9986678899999999999864    589999999999999999999999999988754  3456789999999999999


Q ss_pred             cHHHHHHHHhhCC--CCeeecCcCcccccccccccCC-CCCCcCCCCcccccCCcEEEEEeCCCCccCCC-CCceeEEEe
Q 013850          322 GKELMEDCQKNIP--GATIFQGYGMTETCAPISLENP-LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP-NQLGEIWVR  397 (435)
Q Consensus       322 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gei~v~  397 (435)
                      ++++.+++.+.++  ++++++.||+||+++.+....+ .....+++++|+|++|++++|+|+++|++++. |+.|||+++
T Consensus       397 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~  476 (663)
T 1ry2_A          397 AAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK  476 (663)
T ss_dssp             CHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEES
T ss_pred             CHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEe
Confidence            9999999999885  3899999999999876665543 22245778999999999999999658999988 999999999


Q ss_pred             C--CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          398 G--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       398 g--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |  |+++.|  ||++++.+.+.+ +-..+|||+|||+++
T Consensus       477 g~~p~~~~g--y~~~~~~~~~~~-~~~~~g~y~TGDlg~  512 (663)
T 1ry2_A          477 AAWPSFART--IWKNHDRYLDTY-LNPYPGYYFTGDGAA  512 (663)
T ss_dssp             SCCTTSCCE--ETTCHHHHHHHH-TSSSTTSEEEEEEEE
T ss_pred             cCCCchhcc--cccChHHHHHhh-hcCCCCEEEcCCEEE
Confidence            9  589999  999999887765 112367999999874

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.7e-58  Score=464.46  Aligned_cols=380  Identities=22%  Similarity=0.283  Sum_probs=316.8

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++  |+++|+++.  ++.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus        27 ~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~  102 (617)
T 3rg2_A           27 LPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP  102 (617)
T ss_dssp             CCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEE
Confidence            899999999987  999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhh-cC-CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKD-LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +|+++.++.+++.++++.+++++++++....        ..+.. .. ...+.+...            .....+.+...
T Consensus       103 vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~  170 (617)
T 3rg2_A          103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND------------SGEHNLQDAIN  170 (617)
T ss_dssp             EEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC------------CSTTBHHHHHH
T ss_pred             ccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc------------ccccchhhhhc
Confidence            9999999999999999999999999987643        11111 11 112222111            01112333333


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~  255 (435)
                      ...  .........++++++|+|||||||.||+|+++|+++.+.+........+...  +++++.+|++|.+++.. .++
T Consensus       171 ~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~--~~~l~~~p~~~~~~~~~~~~~  246 (617)
T 3rg2_A          171 HPA--EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQ--TRYLCAIPAAHNYAMSSPGSL  246 (617)
T ss_dssp             SCC--SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECSCTTSHHHHHSSHHH
T ss_pred             ccc--cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCc--ceEEEeccchhhhhhhHHHHH
Confidence            222  2333445678999999999999999999999999999988776666555443  99999999999988854 588


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecCCCCcHHHHHHHHhhC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNI  333 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~  333 (435)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|++......  ..+++||.+++||+++++++.++|.+.+
T Consensus       247 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~  326 (617)
T 3rg2_A          247 GVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI  326 (617)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred             HHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence            99999999999998999999999999999999999999999988654332  3689999999999999999999999999


Q ss_pred             CCCeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcc
Q 013850          334 PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV  412 (435)
Q Consensus       334 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~  412 (435)
                      + +++++.||+||++....... ........++|.|+ ++++++|+| +++++++.|++|||+|+|++++.|  ||++|+
T Consensus       327 ~-~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~p~  401 (617)
T 3rg2_A          327 G-CQLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRG--YYKSPQ  401 (617)
T ss_dssp             C-SEEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSC--CTTCHH
T ss_pred             C-CcEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccch--hcCChh
Confidence            6 99999999999875544322 11123346789997 788999999 689999999999999999999999  999999


Q ss_pred             cccccccccccCcceecCCCCC
Q 013850          413 FTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       413 ~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      .|.+.|   ..++||+|||+++
T Consensus       402 ~t~~~f---~~~~~yrTGDl~~  420 (617)
T 3rg2_A          402 HNASAF---DANGFYCSGDLIS  420 (617)
T ss_dssp             HHHHHB---CTTSCEEEEEEEE
T ss_pred             hhhhcc---CCCCceecCceEE
Confidence            999988   3578999999874

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.8e-59  Score=466.43  Aligned_cols=388  Identities=22%  Similarity=0.288  Sum_probs=314.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecC--CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850           27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~  104 (435)
                      .|+.++|.++++++|+++|+++.+  .++.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus        11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   90 (590)
T 3kxw_A           11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGC   90 (590)
T ss_dssp             SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCc
Confidence            799999999999999999998643  237999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCC---HHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850          105 IASTANPVYT---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (435)
Q Consensus       105 ~~v~i~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (435)
                      +++|++|.++   .+++.++++.+++++++++.+....+...........            ........+.+.....  
T Consensus        91 ~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--  156 (590)
T 3kxw_A           91 IAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKF------------LKIPAIALESIELNRS--  156 (590)
T ss_dssp             EEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEE------------TTEEEEEGGGCCGGGG--
T ss_pred             EEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccc------------cccceeechhcccccc--
Confidence            9999999884   5788999999999999999887766543321000000            0000011111111111  


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .........++++++|+|||||||.||+|.++|+++.+.+........+..  +|++++.+|++|.+|+...++.++..|
T Consensus       157 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~g~~~~~~~~l~~G  234 (590)
T 3kxw_A          157 SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMND--ETIIFSWLPPHHDMGLIGCILTPIYGG  234 (590)
T ss_dssp             GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCTTSHHHHHTTTHHHHHHT
T ss_pred             ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCC--cCeEEEecCCCcchhhHHHHHHHHhcC
Confidence            122344567899999999999999999999999999999887766555543  399999999999999975589999999


Q ss_pred             cEEEecCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhc---ccccCCCCcceeEEEecCCCCcHHHHHHHHhhCC
Q 013850          262 NCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN---SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP  334 (435)
Q Consensus       262 ~~i~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~---~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  334 (435)
                      +++++.+.+    ++..+++.++++++|++.++|.++..+++.   ......++++||.+++||+++++++.++|.+.|+
T Consensus       235 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~  314 (590)
T 3kxw_A          235 IQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFK  314 (590)
T ss_dssp             CEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred             ceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHH
Confidence            999999865    789999999999999999999999998875   3344567899999999999999999999999874


Q ss_pred             -----CCeeecCcCcccccccccccCCC-------------------------CCCcCCCCcccccCCcEEEEEeCCCCc
Q 013850          335 -----GATIFQGYGMTETCAPISLENPL-------------------------VGVRRSGSAGTLVAGVEAQIVSVDTLK  384 (435)
Q Consensus       335 -----~~~~~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~  384 (435)
                           +.++++.||+||++++++.....                         ....+..++|+|+++  ++|+|+++++
T Consensus       315 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~  392 (590)
T 3kxw_A          315 EFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLI  392 (590)
T ss_dssp             GGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCC
T ss_pred             HcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCc
Confidence                 35899999999999877653321                         112345688999998  8889987799


Q ss_pred             cCCCCCceeEEEeCCCccccccccCCccccccccc--cccc-Cc--ceecCCCCC
Q 013850          385 PLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--CEHT-DS--FIRGKDQQT  434 (435)
Q Consensus       385 ~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--~~~~-~~--~~~tgD~~~  434 (435)
                      ++++|++|||+|+||+++.|  ||++|+.|++.|.  .++. +|  ||+|||+++
T Consensus       393 ~~~~g~~GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~  445 (590)
T 3kxw_A          393 PCDFDQVGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF  445 (590)
T ss_dssp             BCCTTBCEEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred             CCCCCCEEEEEEeCCccccc--ccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence            99999999999999999999  9999999999882  1111 13  999999874

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.6e-57  Score=453.33  Aligned_cols=380  Identities=17%  Similarity=0.157  Sum_probs=305.9

Q ss_pred             CCchHHHHHhhcccCCCceeeeecCC--------CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHH
Q 013850           26 SFSMVHFLFRNSASYSSKLALIDADS--------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~l   97 (435)
                      ++|+.++|.++++++|+++|+++.+.        ++.+||+||.++++++|+.|++.|+ +||+|+++++|++++++++|
T Consensus        19 ~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~l   97 (562)
T 3ite_A           19 TVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIV   97 (562)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHH
Confidence            38999999999999999999986531        2689999999999999999999999 79999999999999999999


Q ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhh
Q 013850           98 GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL  177 (435)
Q Consensus        98 A~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (435)
                      ||+++|++++|+++.++.+++.++++.++++++|++++....+.... ...++...              ...+.+....
T Consensus        98 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~  162 (562)
T 3ite_A           98 GIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPP-ETKVLDTK--------------NQSFIENLST  162 (562)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCT-TCEEEETT--------------CHHHHHHHHH
T ss_pred             HHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCc-cceeeccc--------------chhhhhhccc
Confidence            99999999999999999999999999999999999876544332111 11111111              1122223322


Q ss_pred             cCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh------hccCCCcEEEecchHHHHHHHH
Q 013850          178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE------LVGELDHVVLCVLPMFHVFGLS  251 (435)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~------~~~~~~d~~l~~~~l~~~~g~~  251 (435)
                      ..  .........++++++|+|||||||.||+|+++|+++.+..........      ......+++++..++.|..++.
T Consensus       163 ~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (562)
T 3ite_A          163 QD--TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG  240 (562)
T ss_dssp             SC--CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred             cc--ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence            22  222334556789999999999999999999999999887766544322      1122338999999999988874


Q ss_pred             HHHHhhhhcCcEEEecCCCC-HHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHH
Q 013850          252 VILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ  330 (435)
Q Consensus       252 ~~~~~~l~~G~~i~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~  330 (435)
                       .++.++..|+++++.+.+. +..+++.++++++|++.++|+++..+...    ..++++||.+++||+++++++.++|+
T Consensus       241 -~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~  315 (562)
T 3ite_A          241 -EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWS  315 (562)
T ss_dssp             -HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHT
T ss_pred             -HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHh
Confidence             7888999999999987653 57788999999999999999998877543    34688999999999999999999999


Q ss_pred             hhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCC
Q 013850          331 KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINF  410 (435)
Q Consensus       331 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~  410 (435)
                      +.++ +++++.||+||++..++...... .....++|+|+++++++|+|+++++++++|+.|||+++|++++.|  ||++
T Consensus       316 ~~~~-~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~  391 (562)
T 3ite_A          316 SSDR-VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG--YLNR  391 (562)
T ss_dssp             TCSS-CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCE--ESSC
T ss_pred             hCCC-cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchh--hCCC
Confidence            9875 99999999999987666543332 445678999999999999998889999999999999999999999  9999


Q ss_pred             cccccccccccccCcceecCCCCC
Q 013850          411 FVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      |+.|...+  .+.++||+|||+++
T Consensus       392 p~~t~~~~--~~g~~w~~TGDlg~  413 (562)
T 3ite_A          392 PDAKGFCD--INGRKMYRTGDIVR  413 (562)
T ss_dssp             TTCCSEEE--ETTEEEEEEEEEEE
T ss_pred             cccccccc--CCCCEEEecCCEEE
Confidence            99987654  22345999999874

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.1e-58  Score=451.46  Aligned_cols=381  Identities=22%  Similarity=0.301  Sum_probs=299.6

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      +||.++|.++++++|+++|+++.  ++++||+||.++++++|+.|++.   +||+|+|+++|++++++++|||+++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~   75 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI   75 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            47889999999999999999987  48999999999999999999986   89999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC--CCcEEeccCCcccccccccccccc-cchhhhhhhcCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVTD  183 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  183 (435)
                      +|+++.++.+++.++++.++++++|++.+.........  ........................ ...+....... ...
T Consensus        76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (501)
T 3ipl_A           76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES-PSN  154 (501)
T ss_dssp             EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CC-HHH
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCC-ccc
Confidence            99999999999999999999999999976544332111  000000000000000000000000 00000000000 001


Q ss_pred             CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (435)
Q Consensus       184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~  263 (435)
                      .......++++++|+|||||||.||+|.++|+++.+..........+..  +|++++.+|++|.+|+. .++.++..|++
T Consensus       155 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~g~~-~~~~~l~~G~~  231 (501)
T 3ipl_A          155 ILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDR--DTNWLSVLPIYHISGLS-VLLRAVIEGFT  231 (501)
T ss_dssp             HTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCT--TCEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred             ccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCc--cCEEEEeCcHHHHHHHH-HHHHHHHcCce
Confidence            1233467899999999999999999999999999998777665554433  39999999999999996 68899999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       264 i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      +++.+.+++..+++.++++++|++.++|+++..|.+......   .+||.+++||+++++++.+++.+.  ++++++.||
T Consensus       232 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG  306 (501)
T 3ipl_A          232 VRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSFG  306 (501)
T ss_dssp             EEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecccc
Confidence            999999999999999999999999999999999998765433   289999999999999999999884  599999999


Q ss_pred             cccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccccc
Q 013850          344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHT  423 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~  423 (435)
                      +||+++.+..........+.+++|+|+++++++|+|++      +++.|||+++|++++.|  ||++++.+.. |    .
T Consensus       307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~g--Y~~~~~~t~~-~----~  373 (501)
T 3ipl_A          307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNG--YLYPTDLTGT-F----E  373 (501)
T ss_dssp             EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSC--CSBSTTCCCS-E----E
T ss_pred             ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhh--hCcChhhcch-h----c
Confidence            99998766554433324567899999999999999964      46789999999999999  9999999987 5    4


Q ss_pred             CcceecCCCCC
Q 013850          424 DSFIRGKDQQT  434 (435)
Q Consensus       424 ~~~~~tgD~~~  434 (435)
                      +|||+|||+++
T Consensus       374 ~g~~~TGDl~~  384 (501)
T 3ipl_A          374 NGYFNTGDIAE  384 (501)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCceecCCEEE
Confidence            78999999874

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=5e-58  Score=450.28  Aligned_cols=363  Identities=25%  Similarity=0.347  Sum_probs=297.9

Q ss_pred             CchHHHHHhhcccCCC-ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850           27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~  105 (435)
                      .|+.+.|.++++++|+ ++|+++.  ++.+||+||.++++++|+.|+     .|++|+++++|++++++++|||+++|++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~   94 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA   94 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred             chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            6899999999999998 9999987  489999999999999999774     4889999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (435)
Q Consensus       106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (435)
                      ++|++|.++.+++.++++.++++++|++.+...  .........+..+                      ....  ...+
T Consensus        95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~----------------------~~~~--~~~~  148 (505)
T 3nyq_A           95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--PPALGALERVDVD----------------------VRAR--GAVP  148 (505)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--CGGGTTSEEEECC----------------------TTCC--CCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--chhhccccccccc----------------------cccc--cCCC
Confidence            999999999999999999999999999865210  0000000000000                      0000  1223


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      .....++++++|+|||||||.||+|.++|+++.+........+.+...  |++++.+|++|.+|+...++.++..|++++
T Consensus       149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~  226 (505)
T 3nyq_A          149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVR  226 (505)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred             CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCC--cEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence            345678999999999999999999999999999988776666655443  999999999999998767899999999999


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc---CCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR---KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      +.+.+++..+++.+ ++++|+++++|+++..|++.....   ...++++|.+++||+++++++.+++.+.++ +++++.|
T Consensus       227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~Y  304 (505)
T 3nyq_A          227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIERY  304 (505)
T ss_dssp             ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEE
T ss_pred             ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeeccc
Confidence            99999999999999 889999999999999998743221   235778999999999999999999999886 9999999


Q ss_pred             CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCC---CCceeEEEeCCCccccccccCCccccccccc
Q 013850          343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP---NQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  419 (435)
Q Consensus       343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~  419 (435)
                      |+||++..+......  ..+.+++|+|+++++++|+| +++++++.   |++|||+++|++++.|  ||++|+.|.+.| 
T Consensus       305 G~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f-  378 (505)
T 3nyq_A          305 GMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTE--YLNRPDATAAAF-  378 (505)
T ss_dssp             EETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCE--ETTCHHHHHHTB-
T ss_pred             chhhcccccccCCCC--CCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhh--hCCChhHhhhhh-
Confidence            999998766654333  55678999999999999999 57888876   8999999999999999  999999999987 


Q ss_pred             ccccCcceecCCCCC
Q 013850          420 CEHTDSFIRGKDQQT  434 (435)
Q Consensus       420 ~~~~~~~~~tgD~~~  434 (435)
                        ..++||+|||+++
T Consensus       379 --~~~g~y~TGDl~~  391 (505)
T 3nyq_A          379 --TEDGFFRTGDMAV  391 (505)
T ss_dssp             --CTTSCEEEEEEEE
T ss_pred             --cCCCCCccCCeEE
Confidence              3578999999874

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.4e-56  Score=481.16  Aligned_cols=376  Identities=18%  Similarity=0.221  Sum_probs=311.9

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .++.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~  541 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY  541 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            68999999999999999999987  4899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (435)
                      +|++|.++.+++.++++.+++++++++......+.........+..+..                .....  .  ...+.
T Consensus       542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~--~--~~~~~  601 (1304)
T 2vsq_A          542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ----------------TRFEE--Q--ASDPA  601 (1304)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG----------------GGGGS--C--SSCCC
T ss_pred             EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc----------------ccccc--c--cCCCC
Confidence            9999999999999999999999999998765443322211111111100                00000  1  12223


Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~  266 (435)
                      ....++++++|+|||||||.||||+++|+++.+. ......  +....+|+++...|++|..+.+ .++.++..|+++++
T Consensus       602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~--~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~  677 (1304)
T 2vsq_A          602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDY--MAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLII  677 (1304)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCS--SCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHh--cCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEE
Confidence            4567899999999999999999999999999865 221111  2223349999999999988874 88999999999999


Q ss_pred             cCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      .+.   .++..+++.++++++|++.++|+++..|.+..   ...+++||.+++|||+++.++.++|.+.+++.+++|.||
T Consensus       678 ~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG  754 (1304)
T 2vsq_A          678 ADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYG  754 (1304)
T ss_dssp             CCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEC
Confidence            864   68999999999999999999999999998753   224678999999999999999999999988789999999


Q ss_pred             cccccccccccCCCC--CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc---
Q 013850          344 MTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW---  418 (435)
Q Consensus       344 ~tE~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~---  418 (435)
                      +||++..++......  ......++|+|++|++++|+| +++++++.|++|||+|+|++++.|  ||++|+.|.++|   
T Consensus       755 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~  831 (1304)
T 2vsq_A          755 PTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKG--YVNRADLTKEKFIEN  831 (1304)
T ss_dssp             CGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCC--BTTCHHHHHHHEEEC
T ss_pred             hhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCcc--ccCCcccchhhhccC
Confidence            999987766543221  133456899999999999999 689999999999999999999999  999999999988   


Q ss_pred             cccccCcceecCCCCC
Q 013850          419 GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       419 ~~~~~~~~~~tgD~~~  434 (435)
                      .+...++||||||+++
T Consensus       832 p~~~g~~~yrTGDl~~  847 (1304)
T 2vsq_A          832 PFKPGETLYRTGDLAR  847 (1304)
T ss_dssp             TTSTTCEEEEEEEEEE
T ss_pred             CCCCCCeeEecCCeEE
Confidence            2223457999999974

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3e-33  Score=269.72  Aligned_cols=206  Identities=18%  Similarity=0.219  Sum_probs=172.6

Q ss_pred             CCCC-CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc-cCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850          188 SVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       188 ~~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      ...+ +++++|+|||||||.||+|.++|+++.+............ ...+|++++..|+.|..+.+..++.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3456 8999999999999999999999999987765554333221 2334999999999777776667888999999999


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG  343 (435)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG  343 (435)
                      +.+.+++..+++.|+++++|++.++|+++..|++.......+  +++||.+++||+++++++.+++++.|+ +++++.||
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG  239 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSFG  239 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecCc
Confidence            998889999999999999999999999999999876555444  789999999999999999999999995 99999999


Q ss_pred             ccccccc-ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          344 MTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       344 ~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      +||+++. +.....     .....+.+.++++++|+|+++++++++|+.|||+++|.
T Consensus       240 ~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~  291 (436)
T 3qov_A          240 MTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL  291 (436)
T ss_dssp             EGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES
T ss_pred             chhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc
Confidence            9999654 333321     12336777889999999988999999999999999984

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.98  E-value=2.1e-32  Score=257.88  Aligned_cols=220  Identities=15%  Similarity=0.079  Sum_probs=176.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEecchH-HHHHHHHHHHHhhhhcCcEEE
Q 013850          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (435)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~~l-~~~~g~~~~~~~~l~~G~~i~  265 (435)
                      ...++++++|+|||||||.||+|.++|+++.....+......... ..+|++++..|+ +|..++. ..+.++..|+ ++
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v  164 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MF  164 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CE
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EE
Confidence            457889999999999999999999999999988765432222222 233999999999 9999986 5566688898 67


Q ss_pred             ecCCCCHH-----------------------HHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850          266 SMGKFDIE-----------------------MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (435)
Q Consensus       266 ~~~~~~~~-----------------------~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~  322 (435)
                      +...+++.                       .+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus       165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~  244 (369)
T 3hgu_A          165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN  244 (369)
T ss_dssp             ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred             ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence            77677777                       8888999999999999999999999875544456789999999999999


Q ss_pred             HHHHHHHH-hhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccc------cCCcEEEEEeCCCCccCCCCCceeEE
Q 013850          323 KELMEDCQ-KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLKPLPPNQLGEIW  395 (435)
Q Consensus       323 ~~~~~~~~-~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gei~  395 (435)
                      +++.++++ +.||++++++.||+||+++++... +      ..++|++      +++++++|+|+++++++++|+.|||+
T Consensus       245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~-~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~  317 (369)
T 3hgu_A          245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSL-L------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI  317 (369)
T ss_dssp             HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC-C------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred             HHHHHHHHHHhCCCcEEEcccCchhhhcceecc-c------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence            99999999 999779999999999988665321 1      1158888      99999999997799999999999999


Q ss_pred             EeCC---CccccccccCCcccccccc
Q 013850          396 VRGP---NVTPGIVYINFFVFTLFLW  418 (435)
Q Consensus       396 v~g~---~~~~g~~y~~~~~~~~~~~  418 (435)
                      |++.   .++.+  |+..+..+....
T Consensus       318 vt~l~~~~~l~r--y~tgD~~~~~~~  341 (369)
T 3hgu_A          318 VTHLSPWAFYPR--VAERDTAIRLPG  341 (369)
T ss_dssp             EEEEETTEEEEE--EEEEEEEEEECC
T ss_pred             EEEcCccccccc--ccCCceEEEecC
Confidence            9883   33556  877666655443

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.98  E-value=7.8e-32  Score=259.87  Aligned_cols=224  Identities=20%  Similarity=0.217  Sum_probs=177.4

Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCCCcEEEecchH-HHHHHHHHHHHhhhhcCcEE
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCV  264 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~~l-~~~~g~~~~~~~~l~~G~~i  264 (435)
                      ....++++++|+|||||||.||+|.++|+++............ .....+|++++..|+ +|..++. ..+.++..|+++
T Consensus        85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~  163 (437)
T 2y27_A           85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTV  163 (437)
T ss_dssp             CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEE
T ss_pred             ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEE
Confidence            3456789999999999999999999999998876554333221 212334999999998 6777664 678899999999


Q ss_pred             EecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++.+.+++..+++.|+++++|++.++|+++..|++.....+.+  +++||.+++||+++++++.+++++.|+ +++++.|
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y  242 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIY  242 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecC
Confidence            9988889999999999999999999999999998875444433  479999999999999999999999885 9999999


Q ss_pred             Cccccccc-ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850          343 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  421 (435)
Q Consensus       343 G~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~  421 (435)
                      |+||+++. +......    ....++.+.+++.++|+|+++++++++|+.|||+++|..              .+.+   
T Consensus       243 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t--------------~~~~---  301 (437)
T 2y27_A          243 GLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT--------------KEAL---  301 (437)
T ss_dssp             EETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS--------------CSSS---
T ss_pred             CchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC--------------cCCc---
Confidence            99998543 4433222    111256677899999999888999999999999999831              1122   


Q ss_pred             ccCcceecCCCCC
Q 013850          422 HTDSFIRGKDQQT  434 (435)
Q Consensus       422 ~~~~~~~tgD~~~  434 (435)
                       .++||+|||+++
T Consensus       302 -~~~~y~TGDl~~  313 (437)
T 2y27_A          302 -PIIRYRTRDLTR  313 (437)
T ss_dssp             -CCCSEEEEEEEC
T ss_pred             -hhheeecCCEEE
Confidence             256888888764

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=1.6e-31  Score=258.09  Aligned_cols=207  Identities=21%  Similarity=0.231  Sum_probs=167.5

Q ss_pred             CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCCCcEEEecchH-HHHHHHHHHHHhhhhcCcEE
Q 013850          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCV  264 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~~l-~~~~g~~~~~~~~l~~G~~i  264 (435)
                      ....++++++|+|||||||.||+|.++|+++............ .....+|++++..|+ +|..++ ...+.++..|+++
T Consensus        87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~  165 (443)
T 2y4o_A           87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMV  165 (443)
T ss_dssp             CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEE
T ss_pred             cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEE
Confidence            3456789999999999999999999999998876554433221 212334999999998 466666 4678889999999


Q ss_pred             EecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY  342 (435)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y  342 (435)
                      ++.+.+++..+++.|+++++|++.++|+++..|++.....+.+  +++||.+++||+++++++.+++++.|+ +++++.|
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y  244 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIY  244 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEecc
Confidence            9998889999999999999999999999999998875444433  479999999999999999999999985 9999999


Q ss_pred             Cccccccc-ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850          343 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  399 (435)
Q Consensus       343 G~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~  399 (435)
                      |+||+++. +......    .....+.+.+++.++|+|+++++++++|+.|||+++|.
T Consensus       245 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~  298 (443)
T 2y4o_A          245 GLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL  298 (443)
T ss_dssp             EETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred             CchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC
Confidence            99997543 3333222    11125556789999999988899999999999999983

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=1.1e-31  Score=251.13  Aligned_cols=193  Identities=19%  Similarity=0.227  Sum_probs=161.2

Q ss_pred             CCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCC
Q 013850          191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF  270 (435)
Q Consensus       191 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~  270 (435)
                      .+++++|+|||||||.||+|++||+++.+.+......+.+...  |++++.+|++|.+|+. .++.++..|+++++.++.
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPG--TRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCC--CEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc
Confidence            4789999999999999999999999999988776666555443  9999999999999995 778889999999887542


Q ss_pred             CHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccccccc
Q 013850          271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP  350 (435)
Q Consensus       271 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  350 (435)
                        ...++.++++++|++.++|+++..|++.... ..++++||.+++||+++++++.+++++.  ++++++.||+||+++.
T Consensus       113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~  187 (358)
T 4gs5_A          113 --ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSH  187 (358)
T ss_dssp             --SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSE
T ss_pred             --ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccce
Confidence              2346788999999999999999999987653 3478999999999999999999999875  5999999999999887


Q ss_pred             ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCcccc
Q 013850          351 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG  404 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g  404 (435)
                      +......  ....+.+|.+.||+++.+.+           .|||+++|+....|
T Consensus       188 ~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g  228 (358)
T 4gs5_A          188 VALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQ  228 (358)
T ss_dssp             EEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTC
T ss_pred             eeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccccCc
Confidence            7765544  45678889999999888744           38999998755444

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.17  E-value=0.0019  Score=62.76  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEeCCCCC-CCccceeeccHHHHHH
Q 013850          188 SVKQTDAAALLYSSGTT-GVSKGVILTHKNFIAA  220 (435)
Q Consensus       188 ~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~~  220 (435)
                      -..++.+.+...||||| |.+|.++.|.+.+-..
T Consensus        89 iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~  122 (581)
T 4eql_A           89 VISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL  122 (581)
T ss_dssp             GTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred             ccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence            34667778999999999 6799999999987553

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.08  E-value=0.00081  Score=65.48  Aligned_cols=31  Identities=23%  Similarity=0.232  Sum_probs=26.7

Q ss_pred             CCCCCEEEEEeCCCCC-CCccceeeccHHHHH
Q 013850          189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFIA  219 (435)
Q Consensus       189 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~  219 (435)
                      ..++.+.++..||||| |+||.|..|...+-.
T Consensus        96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            4667778999999999 789999999998765

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=96.46  E-value=0.0082  Score=58.21  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=27.3

Q ss_pred             CCCCCCCEEEEEeCCCCC-CCccceeeccHHHHH
Q 013850          187 VSVKQTDAAALLYSSGTT-GVSKGVILTHKNFIA  219 (435)
Q Consensus       187 ~~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~  219 (435)
                      .-..++.+.+...||||| |++|.++.|.+.+-.
T Consensus        93 ~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           93 PILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             CccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            345667778899999999 779999999998755

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=95.21  E-value=0.15  Score=48.20  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=77.3

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTAN  110 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~  110 (435)
                      .++.++.+...+|       ..+|++.+...+..+++.+...|+.++|++...++-+.  ..+...++++..|+..++++
T Consensus        88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  167 (437)
T 2y27_A           88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG  167 (437)
T ss_dssp             CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred             ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence            4456665433323       46899999988888888887889999999999888643  23445688889999998776


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      . .+.+.+...+++.++.+++..+..+..+.
T Consensus       168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  197 (437)
T 2y27_A          168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIA  197 (437)
T ss_dssp             S-CCHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHhCCCEEEECHHHHHHHH
Confidence            5 47888889999999999999987766553

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=94.84  E-value=0.17  Score=47.77  Aligned_cols=88  Identities=11%  Similarity=0.101  Sum_probs=71.4

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v  130 (435)
                      ..+|.+.+...+..++..+...|+.++|++...++-+.  ..+...++++..|+..++++.. +.+.+...+++.++.++
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  188 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII  188 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence            46899999988888888887889999999999888643  2344568888999999887654 77888899999999999


Q ss_pred             EEccccHHHHh
Q 013850          131 ITVPELWDKVK  141 (435)
Q Consensus       131 i~~~~~~~~~~  141 (435)
                      +..+..+..+.
T Consensus       189 ~~~Ps~~~~l~  199 (443)
T 2y4o_A          189 LVTPSYMLNLI  199 (443)
T ss_dssp             EECHHHHHHHH
T ss_pred             EECHHHHHHHH
Confidence            99887766543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=94.80  E-value=0.15  Score=48.13  Aligned_cols=99  Identities=16%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             CceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--CcHHHHHHHHHHcCcEEEecCCC
Q 013850           42 SKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPV  112 (435)
Q Consensus        42 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~~~  112 (435)
                      +.+|++...+|       ..+|.+.+...+..++..+...|+.++|++...++-+  ...+..+++++..|+..++.+..
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  165 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG  165 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence            56666543333       4689999999998888888888999999999988754  23344678889999998887654


Q ss_pred             CCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          113 YTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                       ..+.+...+++.++.+++..+..+..+.
T Consensus       166 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~  193 (436)
T 3qov_A          166 -NSKRQIKFISDFKTTALHAIPSYAIRLA  193 (436)
T ss_dssp             -CHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred             -CHHHHHHHHHHHCCCEEEECHHHHHHHH
Confidence             6788888999999999999988766554

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=94.69  E-value=0.0073  Score=55.62  Aligned_cols=44  Identities=14%  Similarity=0.131  Sum_probs=32.5

Q ss_pred             CCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          387 PPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       387 ~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.++.|++.+.+|++..+  |.++++....  +.+..++||+|||+++
T Consensus       194 ~~~~~g~~~~~~pgv~~~--~~~~Gel~~~--g~~~~~g~~~TGDlg~  237 (358)
T 4gs5_A          194 NGPEASELYVFLPGIQYG--VDERGCLHIS--GAVTNGQTVQTNDLVE  237 (358)
T ss_dssp             SSTTCCSCEEECTTCEEE--ECTTSEEEEE--SGGGTTCCEEEEEEEE
T ss_pred             cccccceeeccCCCeEEE--ecCcCceEEe--cccccCcceecCCccc
Confidence            345668888888888888  8877776544  5566778888888764

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=90.77  E-value=0.82  Score=41.83  Aligned_cols=87  Identities=9%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCc--HHHHHHHHHHcCcEEEecCCCCCHH--------------
Q 013850           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVS--------------  116 (435)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~--------------  116 (435)
                      ..+|.+.+...+..+++.+...|+.++|++..++|-+..  -+...++++..|+.+++..  .++.              
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~  186 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV  186 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence            467999999888887777778899999999999987433  2334455588899665543  3444              


Q ss_pred             ---------HHHHHHHhcCCeEEEEccccHHHHh
Q 013850          117 ---------ELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       117 ---------~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                               .+...+++.++.+++..+..+..+.
T Consensus       187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  220 (369)
T 3hgu_A          187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL  220 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence                     6666889999999999887776554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.44  E-value=2.5  Score=40.45  Aligned_cols=101  Identities=15%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecC
Q 013850           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTAN  110 (435)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~  110 (435)
                      ..++.+|++...+|       ..+|++.+...+..+...   .++.++|++...+|-...+ +..+++++..|+..+..+
T Consensus       160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~  236 (501)
T 3ipl_A          160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD  236 (501)
T ss_dssp             CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence            45678887654433       468999988777665543   4889999999988875322 334677888999988775


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEEccccHHHHhhc
Q 013850          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDL  143 (435)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  143 (435)
                       ..+.+.+...+++.++.+++..+..+..+...
T Consensus       237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  268 (501)
T 3ipl_A          237 -KFNAEQILTMIKNERITHISLVPQTLNWLMQQ  268 (501)
T ss_dssp             -SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence             46888899999999999999998887766543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=89.41  E-value=4.3  Score=39.24  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH---HHHHHHHcCcEEEe
Q 013850           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIAST  108 (435)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~  108 (435)
                      ..|+.+|++.-.+|       ..+|++.+...+......   .++.++|++...+|-...+-.   .+++.+..|++.+.
T Consensus       179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~  255 (539)
T 1mdb_A          179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL  255 (539)
T ss_dssp             CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred             CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence            34677777644433       578999988777665544   378899999888886643322   47888999999887


Q ss_pred             cCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       109 i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      .+ ..+.+.+...+++.++.+++..+..+..+.
T Consensus       256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  287 (539)
T 1mdb_A          256 SP-SPSPDDAFPLIEREKVTITALVPPLAMVWM  287 (539)
T ss_dssp             CS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHH
Confidence            64 467888889999999999999887766553

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=89.31  E-value=1.7  Score=42.23  Aligned_cols=99  Identities=18%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             CceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH--HHHHHHHHHcCcEEEecCCC
Q 013850           42 SKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPV  112 (435)
Q Consensus        42 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~i~~~  112 (435)
                      +.+|++...+|       ..+|++.+...+......+...++.++|++...+|-...+  ...+++++ .|++.+.++ .
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence            77777654433       4689999887766655443335889999998888875433  23356677 999888775 5


Q ss_pred             CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          113 YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      .+.+.+...+++.++.+++..+..+..+..
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            678889999999999999999887776654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=88.44  E-value=4.7  Score=39.02  Aligned_cols=98  Identities=13%  Similarity=0.116  Sum_probs=73.3

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH---HHHHHHHcCcEEEec
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA  109 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~i  109 (435)
                      .++.+|++...+|       ..+|++.+...+...+..   .++.++|++...+|-...+-.   .+++.+..|++.+..
T Consensus       189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            4577777644433       468999988777666554   488999999999886544333   378888999988876


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      + ......+...+++.++.++...+..+..+.
T Consensus       266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  296 (544)
T 3o83_A          266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWL  296 (544)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence            5 457788888999999999999887665543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=86.68  E-value=5.4  Score=38.27  Aligned_cols=97  Identities=10%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHH--HHHHHHcCcEEEecC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC--FLGVIAIGAIASTAN  110 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~--~lA~~~~G~~~v~i~  110 (435)
                      .|+.+|++...+|       ..+|++.+...+..++..   .++.++|++...+|-...+-..  +++++ .|++.+.. 
T Consensus       168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-  242 (517)
T 3r44_A          168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-  242 (517)
T ss_dssp             CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred             CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence            3567777644333       578999988777666554   4889999999988876443332  45555 89888876 


Q ss_pred             CCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      +..+...+...+++.++.++...+..+..+.
T Consensus       243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  273 (517)
T 3r44_A          243 PQFDATKVWSLIVEERVCIGGAVPAILNFMR  273 (517)
T ss_dssp             SSCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence            4578888999999999999999987776554

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=85.96  E-value=3.8  Score=39.29  Aligned_cols=99  Identities=12%  Similarity=0.102  Sum_probs=73.5

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP  111 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~  111 (435)
                      .++.+|++...+|       ..+|++.+...+.....   ..++.++|++...+|-+..+ +..+++++..|++.+.++.
T Consensus       142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence            4566777544333       46899988876665544   45889999999999876433 4457888999999888765


Q ss_pred             C--CCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          112 V--YTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      .  .....+...+++.++.+++..+.....+.
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  250 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL  250 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence            3  46778888999999999999988776653

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=85.41  E-value=3.9  Score=39.22  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCC
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP  111 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~  111 (435)
                      .++.+|++...+|       ..+|++.+...+..++.   ..++.++|++...+|-+..+ +..+++++..|++.+.++.
T Consensus       141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  217 (511)
T 3e7w_A          141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK  217 (511)
T ss_dssp             CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence            4566676533323       46899998877666554   35788999999998876443 3457888999999887754


Q ss_pred             C--CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          112 V--YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      .  .....+...+++.++.+++..+..+..+..
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  250 (511)
T 3e7w_A          218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLM  250 (511)
T ss_dssp             HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHT
T ss_pred             hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            3  466778889999999999999887766543

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=84.31  E-value=4.9  Score=38.95  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=72.4

Q ss_pred             CCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCCC
Q 013850           41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV  112 (435)
Q Consensus        41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~~  112 (435)
                      ++.+|++...+|       ..+|++.+..........+...++.++|++...+|-...+ +...++.+..|+..+.+. .
T Consensus       189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~  267 (550)
T 3rix_A          189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R  267 (550)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred             CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence            356676644333       5689998877665554444335788999999888876432 345667788999888774 5


Q ss_pred             CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          113 YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      .+.+.+...+++.++.+++..+..+..+..
T Consensus       268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  297 (550)
T 3rix_A          268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK  297 (550)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence            678888999999999999999887766543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=84.14  E-value=12  Score=36.79  Aligned_cols=97  Identities=12%  Similarity=0.111  Sum_probs=71.9

Q ss_pred             CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH---HHHHHHHcCcEEEec
Q 013850           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA  109 (435)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~i  109 (435)
                      .|+.+|++...+|       ..+|++.+...+......+   ++.++|++...+|-...+-.   .+++++..|+..+..
T Consensus       182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~  258 (617)
T 3rg2_A          182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA  258 (617)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence            4577777644433       5789999887776665544   78899999999885543332   378888899988876


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV  140 (435)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~  140 (435)
                      +. .+...+...+++.++.++...+.....+
T Consensus       259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l  288 (617)
T 3rg2_A          259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW  288 (617)
T ss_dssp             SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred             CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence            54 5777788899999999999988766654

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=83.36  E-value=5.2  Score=39.09  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH--HHHHHHHcCcEEEec
Q 013850           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTA  109 (435)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~--~~lA~~~~G~~~v~i  109 (435)
                      ..|+.+|++...+|       ..+|++.+...+..+...   .++.++|++...+|-...+-.  .+++.+..|++.+.+
T Consensus       164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~  240 (590)
T 3kxw_A          164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM  240 (590)
T ss_dssp             CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred             CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence            35677787654433       568999998877766554   588999999999988755433  378888999998887


Q ss_pred             CCCC---CHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850          110 NPVY---TVSELSKQVKDSNPKLVITVPELWDKV  140 (435)
Q Consensus       110 ~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~  140 (435)
                      ++..   .+..+...+++.++.++...+..+..+
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l  274 (590)
T 3kxw_A          241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYC  274 (590)
T ss_dssp             CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred             CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence            6532   456777888999999998877655544

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=82.92  E-value=6.3  Score=38.12  Aligned_cols=96  Identities=11%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             CceeeeecC---CC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCCCC
Q 013850           42 SKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVY  113 (435)
Q Consensus        42 ~~~a~~~~~---~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~~~  113 (435)
                      +.+|++...   .|    ..+|++.+...+..++..+   ++.++|++...+|-...+ +..++.++..|+..+.++ ..
T Consensus       180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~  255 (549)
T 3g7s_A          180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT---GLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MF  255 (549)
T ss_dssp             TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH---CCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SC
T ss_pred             CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc---CCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CC
Confidence            667765332   23    5789999988887776654   789999998888865432 233667788899888775 66


Q ss_pred             CHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          114 TVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      +.+.+...+++.++.+++..+..+..+.
T Consensus       256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~  283 (549)
T 3g7s_A          256 NQEMLAENIEKYKGTFSWAVPPALNVLV  283 (549)
T ss_dssp             CHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCeEEEeCCHHHHHHH
Confidence            8888999999999999999987766553

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=82.51  E-value=6.3  Score=37.61  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCC--CCCCEEEEEcCCCCcHH--HHHHHHHHcCcEEE
Q 013850           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGI--TKKDVVLIFAPNSIHFP--ICFLGVIAIGAIAS  107 (435)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~--~~gd~V~l~~~~~~~~~--~~~lA~~~~G~~~v  107 (435)
                      ..|+.+|++...+|       ..+|++.+...+..++.   ..++  .++|++...+|-...+-  ..+++.+..|++.+
T Consensus       150 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v  226 (504)
T 1t5h_X          150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV  226 (504)
T ss_dssp             CCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEE
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEE
Confidence            35677777644433       46899888776665543   3467  78898888887654332  34678889999988


Q ss_pred             ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (435)
Q Consensus       108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (435)
                      ..+ ......+...+++.++.+++..+..+..+.
T Consensus       227 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  259 (504)
T 1t5h_X          227 VVE-EFRPVDALQLVQQEQVTSLFATPTHLDALA  259 (504)
T ss_dssp             ECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred             eCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHH
Confidence            775 467888888999999999999988776664

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=81.77  E-value=10  Score=36.23  Aligned_cols=99  Identities=12%  Similarity=0.038  Sum_probs=67.0

Q ss_pred             cCCCceeeeec---CCC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHH-HHHHH-HHHcCcEEEec
Q 013850           39 SYSSKLALIDA---DSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLG-VIAIGAIASTA  109 (435)
Q Consensus        39 ~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~-~~~lA-~~~~G~~~v~i  109 (435)
                      ..++.+|++..   ..|    ..+|.+.+...+..+...   .++.++|++...+|-...+- ...+. ++..|..+++ 
T Consensus       157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-  232 (509)
T 3ivr_A          157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA---WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-  232 (509)
T ss_dssp             CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-
T ss_pred             CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-
Confidence            34566666533   333    578999988777666554   48899999999988754332 22333 4444555444 


Q ss_pred             CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      . ..+.+.+...+++.++.+++..+..+..+..
T Consensus       233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  264 (509)
T 3ivr_A          233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILD  264 (509)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHH
T ss_pred             c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHh
Confidence            3 6788899999999999999988877766543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=81.10  E-value=11  Score=36.61  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH--HHHHHHHcCcEEEec
Q 013850           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTA  109 (435)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~--~~lA~~~~G~~~v~i  109 (435)
                      ..++.+|++...+|       ..+|++ +........  ....++.++|++...++-...+-.  .+++.+..|+..+..
T Consensus       203 ~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  279 (570)
T 3c5e_A          203 TGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH  279 (570)
T ss_dssp             CBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred             CCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence            34667777644433       467888 443211111  145688999999888887654332  467888899988776


Q ss_pred             CC-CCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850          110 NP-VYTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (435)
Q Consensus       110 ~~-~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (435)
                      .. ..++..+...+++.++.+++..+..+..+..
T Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  313 (570)
T 3c5e_A          280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ  313 (570)
T ss_dssp             CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHh
Confidence            53 6788889999999999999999888777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	435
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-78
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	8e-63
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-59
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-57
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-47
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-42
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-39

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  252 bits (644), Expect = 5e-78
 Identities = 82/400 (20%), Positives = 151/400 (37%), Gaps = 25/400 (6%)

Query: 33  LFRNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           L R+      + A+I    D    + +S+ +    V + +++   LGI K DVV I+ P 
Sbjct: 78  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV-----KDL 143
                +  L    IGA+ S     ++   ++  + DS+ +LVIT  E          K  
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL------SGSVTDIPDVSVKQTDAAAL 197
              A+   +   V    ++ R+   + + +  +L        +  +    ++   D   +
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 257

Query: 198 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           LY+SG+TG  KGV+ T   ++  +     +       D +  C   +  V G S +LY  
Sbjct: 258 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGP 316

Query: 258 LQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
           L  G   +               + ++K++V + +  P  I AL    +  +   D SSL
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376

Query: 312 KLVGSGAAPLGKELMEDCQKNI--PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL 369
           +++GS   P+  E  E   K I      +   +  TET   +    P     ++GSA   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 370 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             GV+  +V  +   P      G + +             
Sbjct: 437 FFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFG 475

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  209 bits (533), Expect = 8e-63
 Identities = 100/398 (25%), Positives = 181/398 (45%), Gaps = 10/398 (2%)

Query: 17  PPLVLPSDPSFSMVHFLFRNSASYSS---KLALIDADSDESLSFSQFKSIVIKVSHSFRH 73
           P    P     +    L +    Y+     +A  DA  + +++++++  + ++++ + + 
Sbjct: 8   PAPFYP-LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR 66

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
            G+     +++ + NS+ F +  LG + IG   + AN +Y   EL   +  S P +V   
Sbjct: 67  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 126

Query: 134 PELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF--HDLIELSGSVTDIPDVSVKQ 191
            +   K+ ++     ++     + S         + +F    L         +P+   + 
Sbjct: 127 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 186

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251
              A ++ SSG+TG+ KGV L H+                  +    +  +  FH     
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
                 L  G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVA 371
             + SG APL KE+ E   K      I QGYG+TET + I +     G  + G+ G +V 
Sbjct: 307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE--GDDKPGAVGKVVP 364

Query: 372 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 409
             EA++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 365 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 400

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  202 bits (514), Expect = 3e-59
 Identities = 78/402 (19%), Positives = 155/402 (38%), Gaps = 26/402 (6%)

Query: 33  LFRNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP 87
           + R++    +K A+I    +     S+++ +    V +V+    + +G+ K D V ++ P
Sbjct: 65  VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
                 I  L +  IGAI S     ++ + L  ++ D + K+VIT  E     K +    
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 184

Query: 148 VLLGSKDKVSS----------SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL 197
           ++  +  +             +                E     T  P   V   D   L
Sbjct: 185 IVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFL 244

Query: 198 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           LY+SG+TG  KGV  +   ++  +L+   +     + D V      +  + G + ++Y  
Sbjct: 245 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED-VFFTAGDIGWITGHTYVVYGP 303

Query: 258 LQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
           L  G   +         +       I++++VT ++V P  +  L +  +S +    + SL
Sbjct: 304 LLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL 363

Query: 312 KLVGSGAAPLGKELMEDCQKNIP--GATIFQGYGMTETCAPISLENPL-VGVRRSGSAGT 368
           + +GS   P+  E+ E   + I      I   Y  TE+ + +       V   + GSA  
Sbjct: 364 RCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASF 423

Query: 369 LVAGVEAQIVSVDTLKPLPPNQ-LGEIWVRGPNVTPGIVYIN 409
              G++A ++  +T + L  +   G + V+    +       
Sbjct: 424 PFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 465

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  195 bits (496), Expect = 2e-57
 Identities = 85/400 (21%), Positives = 159/400 (39%), Gaps = 28/400 (7%)

Query: 21  LPS---DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLG 75
            PS   D   ++  FL R +A +  K  +    + E    ++++      ++    R LG
Sbjct: 2   FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 61

Query: 76  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           +   D V     N       +  V  +GA+  TANP  +  E++  +  +  K+++  P 
Sbjct: 62  VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 121

Query: 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
           L   V+ +         + ++ +        +      L        +   V V +  A 
Sbjct: 122 LLPLVEAI---------RGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAAC 172

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            + Y++GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV    +   
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232

Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             L     V+   + D    +   +   VT    VP + LALA         + +L+ + 
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLV 292

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQGYGMTETC---------APISLENPLVGVRRSGSA 366
            G +   + L+   ++   G  + QGYG+TET          + +   +    +      
Sbjct: 293 VGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 367 GTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 404
           G  +  V  ++   +  +P+P +   LGE+ ++GP +T G
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG 389

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  166 bits (421), Expect = 8e-47
 Identities = 87/405 (21%), Positives = 157/405 (38%), Gaps = 13/405 (3%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           +    L   +A Y  ++A+   +     S+ +  +   +++  F+ LGI +KD V++  P
Sbjct: 26  TFGDLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
           N   F      +  +GA+   A P +  SE++   + +     I      D     +  +
Sbjct: 84  NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII----PDAYSGFDYRS 139

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
           +    + K+ +   I  + +   F  L +L      +P+V    +D A L  S G+TG+S
Sbjct: 140 LARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVK--SSDVAFLQLSGGSTGLS 197

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ-KGNCVVS 266
           K +  TH ++I +         L      V L  LPM H + LS      +   G  VV 
Sbjct: 198 KLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255

Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                 + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E  
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 386
              +    G T+ Q +GM E     +            + G  ++  +   V  D  + +
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV 373

Query: 387 PPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKD 431
            P + G +  RGP    G           F     +    I    
Sbjct: 374 KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  153 bits (387), Expect = 4e-42
 Identities = 66/384 (17%), Positives = 127/384 (33%), Gaps = 38/384 (9%)

Query: 25  PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
           P    +H LF    S   + +A++  +  E L++ +      +++  F   GI K  +V 
Sbjct: 20  PRDKTIHQLFEEQVSKRPNNVAIVCEN--EQLTYHELNVKANQLARIFIEKGIGKDTLVG 77

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           I    SI   I  L V+  G      +  Y    +   + DS  ++++T   L   + ++
Sbjct: 78  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI 137

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
                                    V   +   +         V  K TD A ++Y+SGT
Sbjct: 138 QFNGQ--------------------VEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGT 177

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG  KG +L HK      +               +     +     +  +    L   + 
Sbjct: 178 TGNPKGTMLEHKGISNLKVFFENSLN--VTEKDRIGQFASISFDASVWEMFMALLTGASL 235

Query: 264 VVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            + +     D     + I +  +TV  + P  +        +    I S++ + +  +  
Sbjct: 236 YIILKDTINDFVKFEQYINQKEITVITLPPTYV------VHLDPERILSIQTLITAGSAT 289

Query: 322 GKELMEDCQKNIPGATIFQGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSV 380
              L+   +      T    YG TET    +        +  S   G  +   +  IV  
Sbjct: 290 SPSLVNKWK---EKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD- 345

Query: 381 DTLKPLPPNQLGEIWVRGPNVTPG 404
           + L+     + GE+ + G  +  G
Sbjct: 346 ENLQLKSVGEAGELCIGGEGLARG 369

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  145 bits (365), Expect = 4e-39
 Identities = 77/383 (20%), Positives = 145/383 (37%), Gaps = 21/383 (5%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V+ + R +A+      AL        L+ ++ ++ V  V+      G+  +  V + APN
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S    I  L +  +GA+ +  NP    +EL++ +K       +         + +     
Sbjct: 64  SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-----RQVADAIF 118

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
             GS  ++   G + R  +  S+   IE         D   +    A + Y+SGTTG+ K
Sbjct: 119 QSGSGARIIFLGDLVRDGEPYSYGPPIE---------DPQREPAQPAFIFYTSGTTGLPK 169

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
             I+  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 269 KFDIEMALRAIEKYRVTVW--WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
           +F    AL+ +++ +VT           LA A         + SL+ V    A +   ++
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289

Query: 327 EDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 386
           E   +++        YG TE    + +  P  G   +    + V  V    +     + +
Sbjct: 290 ETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIV---RIGGGVDEIV 345

Query: 387 PPNQLGEIWVRGPNVTPGIVYIN 409
              + GE+ V   +         
Sbjct: 346 ANGEEGELIVAASDSAFVGYLNQ 368

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	435
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.6e-59  Score=470.46  Aligned_cols=397  Identities=21%  Similarity=0.247  Sum_probs=316.1

Q ss_pred             CchHHHH-HhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013850           27 FSMVHFL-FRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (435)
Q Consensus        27 ~tl~~~l-~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~  101 (435)
                      .|+.+.+ +++++.+||++|++...    ..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        71 ~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~  150 (643)
T d1pg4a_          71 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR  150 (643)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence            6777655 47778899999998432    226899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHH-------------Hhhc---CCCcEEeccCCccccccccccc
Q 013850          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDK-------------VKDL---NLPAVLLGSKDKVSSSGLISRS  165 (435)
Q Consensus       102 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~  165 (435)
                      +|++++|+++.++.+++..++++++++++|+++.....             +...   ....+++.........   ...
T Consensus       151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~---~~~  227 (643)
T d1pg4a_         151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID---WQE  227 (643)
T ss_dssp             HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---CCB
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc---ccc
Confidence            99999999999999999999999999999998653221             1111   1222222222111000   011


Q ss_pred             ccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHh-hhhhccCCCcEEEecchH
Q 013850          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPM  244 (435)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~l~~~~l  244 (435)
                      .....+.+......  ....+...+++++++|+|||||||.||||+++|++++........ ...+  ..+|++++.+|+
T Consensus       228 ~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~--~~~d~~~~~~p~  303 (643)
T d1pg4a_         228 GRDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY--HPGDIYWCTADV  303 (643)
T ss_dssp             TTEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC--CTTCEEEECSCT
T ss_pred             ccchhhhhhhcccC--cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCC--CCCCEEEEeCCh
Confidence            11222333333322  444556678999999999999999999999999998765443322 2233  334999999999


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecC
Q 013850          245 FHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGA  318 (435)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG  318 (435)
                      +|++++...++.+|..|+++++.+.    +++..+++.++++++|++.++|+++..|++....  ...++++||.++++|
T Consensus       304 ~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G  383 (643)
T d1pg4a_         304 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVG  383 (643)
T ss_dssp             TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEES
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEe
Confidence            9999987678899999999998753    4789999999999999999999999999887543  456789999999999


Q ss_pred             CCCcHHHHHHHHhhCC--CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEE
Q 013850          319 APLGKELMEDCQKNIP--GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV  396 (435)
Q Consensus       319 ~~l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v  396 (435)
                      +++++++++++.+.++  ++++++.||+||+++++....+.....+.+++|+|++|++++|+| ++|++++.|+.|||++
T Consensus       384 ~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v  462 (643)
T d1pg4a_         384 EPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVI  462 (643)
T ss_dssp             SCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEE
T ss_pred             CCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEE
Confidence            9999999999999986  578999999999998877665554466789999999999999999 5899999999999999


Q ss_pred             eC--CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          397 RG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       397 ~g--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +|  |+++.|  ||++++.+.+.+ +...+|||+|||+++
T Consensus       463 ~~~~p~~~~~--~~~~~~~~~~~~-~~~~~g~~~TGDl~~  499 (643)
T d1pg4a_         463 TDSWPGQART--LFGDHERFEQTY-FSTFKNMYFSGDGAR  499 (643)
T ss_dssp             CSCCTTCCCE--ETTCHHHHHHHH-HSSSTTSEEEEEEEE
T ss_pred             ecCCCccccc--ccCChhhchhhh-cccCCCeEEcCCEEE
Confidence            99  468899  999998877654 223467999998863

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=8.7e-58  Score=451.79  Aligned_cols=393  Identities=26%  Similarity=0.405  Sum_probs=321.1

Q ss_pred             CCchHHHHHhhcccC---CCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850           26 SFSMVHFLFRNSASY---SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (435)
Q Consensus        26 ~~tl~~~l~~~~~~~---p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~  102 (435)
                      +.|+++.|.+.++++   |+.+|+++...++++||+||.+++.++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus        16 ~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~   95 (541)
T d1lcia_          16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI   95 (541)
T ss_dssp             SSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            469999999888777   78889988776789999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhh
Q 013850          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL  177 (435)
Q Consensus       103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (435)
                      |++++|+++.++.+++.++++.++++++|++++..+.+....     ...+++....        ........+......
T Consensus        96 G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  167 (541)
T d1lcia_          96 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK--------TDYQGFQSMYTFVTS  167 (541)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS--------SCBTTBEEHHHHHHH
T ss_pred             CeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCC--------ccccccchhhhhhhh
Confidence            999999999999999999999999999999998876654432     2222222221        111222233332221


Q ss_pred             cC-----CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEecchHHHHHHHH
Q 013850          178 SG-----SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLS  251 (435)
Q Consensus       178 ~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~~l~~~~g~~  251 (435)
                      ..     .....+.....++++++|+|||||||.||+|.++|++++.............. ...+++++.+|++|..+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  247 (541)
T d1lcia_         168 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF  247 (541)
T ss_dssp             HSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred             hccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccc
Confidence            11     11222344556789999999999999999999999999877555443333322 2339999999999999985


Q ss_pred             HHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHh
Q 013850          252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK  331 (435)
Q Consensus       252 ~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~  331 (435)
                       ..+..+..++..+.....+.......+.++++|.+.++|.++..+++.......++++||.+++||+++++.+.+++.+
T Consensus       248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~  326 (541)
T d1lcia_         248 -TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK  326 (541)
T ss_dssp             -HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             -ccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEeccccccccccccccc
Confidence             7777788888888888889999999999999999999999999999988888888999999999999999999999999


Q ss_pred             hCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCc
Q 013850          332 NIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF  411 (435)
Q Consensus       332 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~  411 (435)
                      .++...+++.||+||+++.++.....  ..+.+++|+|+||++++|+|+|++++++.|++|||+|+|++++.|  ||+++
T Consensus       327 ~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~g--Y~~~~  402 (541)
T d1lcia_         327 RFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVNNP  402 (541)
T ss_dssp             HTTCSCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE--ETTBH
T ss_pred             ccCCceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCe--eCCCh
Confidence            99867899999999999988876655  567889999999999999999999999999999999999999999  99999


Q ss_pred             ccccccccccccCcceecCCCCC
Q 013850          412 VFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       412 ~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      +.+...+   +.++||+|||++.
T Consensus       403 ~~~~~~~---~~~~~~~TGDl~~  422 (541)
T d1lcia_         403 EATNALI---DKDGWLHSGDIAY  422 (541)
T ss_dssp             HHHHHHB---CTTSCEEEEEEEE
T ss_pred             hhhhhcc---cCCccccCCCeeE
Confidence            8887755   3577888888763

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-57  Score=448.95  Aligned_cols=394  Identities=23%  Similarity=0.336  Sum_probs=320.3

Q ss_pred             CCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH
Q 013850           17 PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI   94 (435)
Q Consensus        17 ~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~   94 (435)
                      |...+..+  .||.++|+++++++||++|+++.+++  +++||+||.++++++|+.|+++|+++||+|+|+++|++++++
T Consensus         3 p~~~~~~~--~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~   80 (534)
T d1v25a_           3 PSTMMDEE--LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE   80 (534)
T ss_dssp             BCCBCCCC--CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred             CCccCCCC--CCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHH
Confidence            44444444  79999999999999999999987655  469999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCccccccccccccccc
Q 013850           95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIV  169 (435)
Q Consensus        95 ~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  169 (435)
                      ++|||+++|++++|++|.++.+++.++++.+++++++++...........     .+..++....         ......
T Consensus        81 ~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  151 (534)
T d1v25a_          81 AYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYL  151 (534)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCE
T ss_pred             HHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecc---------cccccc
Confidence            99999999999999999999999999999999999999988777655443     2222222221         000111


Q ss_pred             chhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHH
Q 013850          170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG  249 (435)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g  249 (435)
                      ...   ....  .........++++++|+|||||||.||+|.++|.+++.................+++++.+|++|..+
T Consensus       152 ~~~---~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~  226 (534)
T d1v25a_         152 AYE---EALG--EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA  226 (534)
T ss_dssp             EHH---HHCC--SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH
T ss_pred             ccc---cccc--ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcc
Confidence            111   1111  33445567789999999999999999999999999987655444443333344499999999999999


Q ss_pred             HHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHH
Q 013850          250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC  329 (435)
Q Consensus       250 ~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~  329 (435)
                      +...+...+..|.++.+.+.+++..+...+.++++|.+.++|.++..++........++++||.+++||+++++++.+++
T Consensus       227 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~  306 (534)
T d1v25a_         227 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF  306 (534)
T ss_dssp             HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH
T ss_pred             ccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHH
Confidence            97555555544455555567899999999999999999999999999999877788899999999999999999999999


Q ss_pred             HhhCCCCeeecCcCcccccccccccCCCCC---------CcCCCCcccccCCcEEEEEeCCCCccCCC--CCceeEEEeC
Q 013850          330 QKNIPGATIFQGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRG  398 (435)
Q Consensus       330 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gei~v~g  398 (435)
                      ++.  +.++++.||+||++..+........         ..+.+++|+|++|++++|+| ++++.++.  ++.|||+++|
T Consensus       307 ~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g  383 (534)
T d1v25a_         307 ERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKG  383 (534)
T ss_dssp             HHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEES
T ss_pred             HHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcC
Confidence            865  4899999999999988876543321         12357899999999999999 57777765  7799999999


Q ss_pred             CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          399 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       399 ~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++++.|  ||++++.+.+.+   ..+|||+|||+++
T Consensus       384 ~~v~~g--Y~~~~~~t~~~~---~~dg~~~TGDlg~  414 (534)
T d1v25a_         384 PWITGG--YYGNEEATRSAL---TPDGFFRTGDIAV  414 (534)
T ss_dssp             TTSBSS--CBTCHHHHHTTB---CTTSCEEEEEEEE
T ss_pred             Ccccce--ecCChhhhhhhc---ccCCCCccCceeE
Confidence            999999  999999998876   3578999999874

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-56  Score=447.81  Aligned_cols=400  Identities=21%  Similarity=0.249  Sum_probs=308.7

Q ss_pred             Cch-HHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013850           27 FSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVI  100 (435)
Q Consensus        27 ~tl-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~  100 (435)
                      .|+ ...|+++++++|+++|++...    .++++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|||+
T Consensus        58 lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~  137 (640)
T d1ry2a_          58 LNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAIS  137 (640)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence            455 445677889999999998432    2378999999999999999997 6799999999999999999999999999


Q ss_pred             HcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhhcC-----CCcEEeccCCcccccccccccc
Q 013850          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDLN-----LPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus       101 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      ++|++++|+++.++.+++.++++++++++++++.....         .+....     ...............  .....
T Consensus       138 ~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  215 (640)
T d1ry2a_         138 RIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV--AFHAP  215 (640)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC--CCCSS
T ss_pred             cCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc--ccccc
Confidence            99999999999999999999999999999999865332         111111     111111111000000  00000


Q ss_pred             cccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHH
Q 013850          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~  246 (435)
                      .............  .........++++++|+|||||||.||||+++|++++.......... .....+|++++.+|++|
T Consensus       216 ~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~~  292 (640)
T d1ry2a_         216 RDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT-FDTHQEDVFFTAGDIGW  292 (640)
T ss_dssp             SEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH-SCCCSSCEEEECSCTTS
T ss_pred             ccccccccccccc--cccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh-cCCCcccceeeccchhh
Confidence            1111111111111  33445566789999999999999999999999999887654433221 22233499999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccc--cCCCCcceeEEEecCCC
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAP  320 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~  320 (435)
                      ++|....++.+|..|+++++.+.    +++..+++.++++++|++.++|+++..|.+....  ...++++||.+++||++
T Consensus       293 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~  372 (640)
T d1ry2a_         293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP  372 (640)
T ss_dssp             HHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred             hhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEeccc
Confidence            99987778899999999888754    3789999999999999999999999999876433  45679999999999999


Q ss_pred             CcHHHHHHHHhhCC--CCeeecCcCcccccccccccCCCC-CCcCCCCcccccCCcEEEEEeCCCCccCC-CCCceeEEE
Q 013850          321 LGKELMEDCQKNIP--GATIFQGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWV  396 (435)
Q Consensus       321 l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gei~v  396 (435)
                      +++++.+++++.++  ...+++.||+||++.......... ...+.+++|+|++|++++|+|+++++.+. .++.|||++
T Consensus       373 l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i  452 (640)
T d1ry2a_         373 IAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAV  452 (640)
T ss_dssp             CCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEE
T ss_pred             CcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEE
Confidence            99999999999997  357999999999988766544332 25578899999999999999977766554 466799999


Q ss_pred             eC--CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850          397 RG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  434 (435)
Q Consensus       397 ~g--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~  434 (435)
                      ++  |+++.|  ||++++.+.+.| +.+.+|||+|||+++
T Consensus       453 ~~~~p~~~~g--y~~~~e~t~~~~-~~~~~gw~~TGDlg~  489 (640)
T d1ry2a_         453 KAAWPSFART--IWKNHDRYLDTY-LNPYPGYYFTGDGAA  489 (640)
T ss_dssp             SSCCTTSCCE--ETTCHHHHHHHH-TSSSTTSEEEEEEEE
T ss_pred             EecCCCcccc--cccCHHHHHhhh-ccCCCCeEEcCCcee
Confidence            98  589999  999999988866 234467899998763

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=4.8e-54  Score=422.25  Aligned_cols=389  Identities=17%  Similarity=0.215  Sum_probs=321.5

Q ss_pred             CccceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 013850            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (435)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~   86 (435)
                      .+..+|.....+..+|++  .||.++|+++++++||++|+++.  ++++||+||.++++++|+.|+++|+++||+|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~--~tl~~l~~~~a~~~Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~   80 (514)
T d1amua_           5 EEQYLFAVNNTKAEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM   80 (514)
T ss_dssp             HHHHHHHTTCCCCCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHHHHHhcCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEe
Confidence            345667777888899988  99999999999999999999987  58999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccc
Q 013850           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS  166 (435)
Q Consensus        87 ~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (435)
                      +|+++|++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+...............           
T Consensus        81 ~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-----------  149 (514)
T d1amua_          81 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED-----------  149 (514)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS-----------
T ss_pred             CCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccc-----------
Confidence            999999999999999999999999999999999999999999999999988877666543332221110           


Q ss_pred             cccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHH
Q 013850          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (435)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~  246 (435)
                              ... ............++++++|+|||||||.||+|.++|.++................  +++++..|++|
T Consensus       150 --------~~~-~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~  218 (514)
T d1amua_         150 --------TIK-IREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEK--DRIGQFASISF  218 (514)
T ss_dssp             --------TTT-TSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTT--CEEEECSCTTS
T ss_pred             --------ccc-ccccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccccccccccc--ccccceecccc
Confidence                    000 0012223344568899999999999999999999999999987776655555333  99999999999


Q ss_pred             HHHHHHHHHhhhhcCcEEEecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcH
Q 013850          247 VFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (435)
Q Consensus       247 ~~g~~~~~~~~l~~G~~i~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~  323 (435)
                      ..++. .++.++..|+++++...   .+....++.+..+.++.+..+|.....      ....+++++|.+++||+++++
T Consensus       219 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~  291 (514)
T d1amua_         219 DASVW-EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSP  291 (514)
T ss_dssp             THHHH-HHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCH
T ss_pred             ccccc-cccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCH
Confidence            99995 77888888888888753   467888999999999999999976443      234578899999999999999


Q ss_pred             HHHHHHHhhCCCCeeecCcCcccccccccccCCCCC-CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCcc
Q 013850          324 ELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVG-VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT  402 (435)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~  402 (435)
                      ++.+++.+.   ..+++.||+||++.+++....... .....+.|.+.++.++.+.| +++++++.|+.|||+|+||.++
T Consensus       292 ~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~  367 (514)
T d1amua_         292 SLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLA  367 (514)
T ss_dssp             HHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCC
T ss_pred             HHhhhhccc---eeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCccc
Confidence            999888764   889999999999988776544432 34456788999999999999 7999999999999999999999


Q ss_pred             ccccccCCcccccccc--ccc-ccCcceecCCCCC
Q 013850          403 PGIVYINFFVFTLFLW--GCE-HTDSFIRGKDQQT  434 (435)
Q Consensus       403 ~g~~y~~~~~~~~~~~--~~~-~~~~~~~tgD~~~  434 (435)
                      .|  ||++++.+.+.|  +|+ +.++||+|||+++
T Consensus       368 ~g--Y~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~  400 (514)
T d1amua_         368 RG--YWKRPELTSQKFVDNPFVPGEKLYKTGDQAR  400 (514)
T ss_dssp             CE--ETTCHHHHHHHEEECSSSTTSEEEEEEEEEE
T ss_pred             cc--ccccccccceeeEeccccCCCceEEECCEEE
Confidence            99  999999998877  443 4478999999874

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.7e-51  Score=406.09  Aligned_cols=380  Identities=23%  Similarity=0.274  Sum_probs=311.7

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .||.++|.++|+++||++|+++.+  +++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~~--~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~  102 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEETT--EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEEECC--EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            699999999999999999999974  899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh--------cC--CCcEEeccCCcccccccccccccccchhhhhh
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD--------LN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
                      +|++|.++.+++.++++.++++++++++........        ..  ....+..           ........+++.. 
T Consensus       103 vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-  170 (536)
T d1mdba_         103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVA-----------GEAEEFLPLEDLH-  170 (536)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEE-----------SCCTTSEEGGGCC-
T ss_pred             EecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeee-----------eccccccchhhcc-
Confidence            999999999999999999999999998643321110        00  1111111           1111112222221 


Q ss_pred             hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHH-HH
Q 013850          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LY  255 (435)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~-~~  255 (435)
                        .  .....+...++++++|+|||||||.||+|.+||+++...+........+...  +++++..|++|.+++... +.
T Consensus       171 --~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~l~~~~~~  244 (536)
T d1mdba_         171 --T--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS--TVYLAALPMAHNYPLSSPGVL  244 (536)
T ss_dssp             --C--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECSCTTSHHHHHSSHHH
T ss_pred             --c--CCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccc--cccccccccccccceeecccc
Confidence              1  2334456788999999999999999999999999999998876666655444  999999999999987544 44


Q ss_pred             hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (435)
Q Consensus       256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  335 (435)
                      ..+..|.+++..+.+++..+++.+++++++.+..+|..+..+..........++++|.+++||+++++.+.+++.+.++ 
T Consensus       245 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-  323 (536)
T d1mdba_         245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-  323 (536)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred             ccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccC-
Confidence            4455578888888899999999999999999999999999999888878888999999999999999999999999997 


Q ss_pred             CeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccc
Q 013850          336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTL  415 (435)
Q Consensus       336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~  415 (435)
                      ...+..|+.+|.+..+...... .....+++|.|+++....+++.++++.++.++.|||+++|+.++.|  |+++++.+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~g--Y~~~~~~~~  400 (536)
T d1mdba_         324 CTLQQVFGMAEGLVNYTRLDDP-EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRG--YYKAEEHNA  400 (536)
T ss_dssp             SEEEEEEECTTSCEEECCTTSC-HHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSS--CTTCHHHHH
T ss_pred             ceeeeccccccccccccccccc-cccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccc--ccccccccc
Confidence            8888888888876655443322 2455678999987665555555899999999999999999999999  999998877


Q ss_pred             ccccccccCcceecCCCC
Q 013850          416 FLWGCEHTDSFIRGKDQQ  433 (435)
Q Consensus       416 ~~~~~~~~~~~~~tgD~~  433 (435)
                      ..+   ..++|++|||++
T Consensus       401 ~~~---~~~~~~~tGD~~  415 (536)
T d1mdba_         401 ASF---TEDGFYRTGDIV  415 (536)
T ss_dssp             HHB---CTTSCEEEEEEE
T ss_pred             ccc---cccCccccCccc
Confidence            755   356788888875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.6e-47  Score=374.07  Aligned_cols=379  Identities=21%  Similarity=0.279  Sum_probs=306.5

Q ss_pred             CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (435)
Q Consensus        27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~  106 (435)
                      .|+.++|.++++++||++|+++.+.++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            48999999999999999999988767899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHhcCCeEEEEccccHH--HHhhcCCCcEEeccCCcccccccccccccccchhhhhhhc---CCC
Q 013850          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD--KVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS---GSV  181 (435)
Q Consensus       107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  181 (435)
                      +|+++.++.+++.+++++++++++|++.....  .+........++.                   +.++....   ...
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-------------------~~~~~~~~~~~~~~  142 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-------------------LGDLVRDGEPYSYG  142 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEE-------------------HHHHEETTEECCCS
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhcccccccc-------------------chhhhhhhcccccC
Confidence            99999999999999999999999999875322  1121221111211                   11111100   011


Q ss_pred             CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (435)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G  261 (435)
                      .........++++++++|||||||.||+|.++|+++..................++++..+|+.|..+.....+.+...+
T Consensus       143 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  222 (503)
T d3cw9a1         143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALD  222 (503)
T ss_dssp             CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTT
T ss_pred             CccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccc
Confidence            22334566789999999999999999999999999998877665555444455589999999998888877788888999


Q ss_pred             cEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (435)
Q Consensus       262 ~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  339 (435)
                      +++++.+.+++..+...+..++++.+..+|..+..+.....  .....+++||.+++||+++++++...+.+.++ ..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~-~~~~  301 (503)
T d3cw9a1         223 GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKV  301 (503)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCC-SEEE
T ss_pred             cccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccc-cccc
Confidence            99999999999999999999999999999998887766422  34456789999999999999999999999997 8999


Q ss_pred             cCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC-CccccccccCCcccccccc
Q 013850          340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP-NVTPGIVYINFFVFTLFLW  418 (435)
Q Consensus       340 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~-~~~~g~~y~~~~~~~~~~~  418 (435)
                      +.||++|++..+......  .......+.+.+.....+.+ +.++.++.|+.|++.+.+. ....+  |+++++.+.+.|
T Consensus       302 ~~yg~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~~~~t~~~~  376 (503)
T d3cw9a1         302 NIYGTTEAMNSLYMRQPK--TGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVG--YLNQPQATAEKL  376 (503)
T ss_dssp             EEEEETTTEEEEEEESCS--SSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCC--BTTCHHHHHHHE
T ss_pred             ccccccccceeeeecccc--ccccccccccccceeeeeec-ccCcccCCCcccccccccccccccc--ccCChhhhHHHh
Confidence            999999998877765544  23333344444444444444 7889999999999887665 56777  999999998877


Q ss_pred             cccccCcceecCCCCC
Q 013850          419 GCEHTDSFIRGKDQQT  434 (435)
Q Consensus       419 ~~~~~~~~~~tgD~~~  434 (435)
                          .+|||+|||+++
T Consensus       377 ----~~g~~~TgD~g~  388 (503)
T d3cw9a1         377 ----QDGWYRTSDVAV  388 (503)
T ss_dssp             ----ETTEEEEEEEEE
T ss_pred             ----cCCceecccccc
Confidence                478999999874