Citrus Sinensis ID: 013877
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 434 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.864 | 0.634 | 0.872 | 0.0 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.970 | 0.724 | 0.793 | 0.0 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.933 | 0.680 | 0.778 | 0.0 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.820 | 0.615 | 0.873 | 0.0 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.617 | 0.666 | 0.335 | 4e-36 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.682 | 0.732 | 0.328 | 3e-35 | |
| P06168 | 395 | Ketol-acid reductoisomera | yes | no | 0.585 | 0.643 | 0.318 | 1e-29 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.479 | 0.615 | 0.351 | 3e-28 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.472 | 0.621 | 0.347 | 5e-28 | |
| Q8DW43 | 340 | Ketol-acid reductoisomera | yes | no | 0.495 | 0.632 | 0.352 | 6e-28 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/375 (87%), Positives = 348/375 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRI 427
GLPAFPMG IDQTR+
Sbjct: 421 GLPAFPMGNIDQTRM 435
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/431 (79%), Positives = 370/431 (85%), Gaps = 10/431 (2%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSAL 56
MAA T S I S SS+TL + + NL+ + +S+RA ++ T GSAL
Sbjct: 1 MAAVTSSCSTAI-----SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSAL 54
Query: 57 SAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGV 116
A S P LDFETSVFKK+ ++LA +EYIVRGGRDLF+LLPDAF GI QIGV
Sbjct: 55 GATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGV 114
Query: 117 IGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176
IGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETI
Sbjct: 115 IGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETI 174
Query: 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236
SGSDLVLLLISD+AQADNYEKIFS +KPNSILGLSHGFLLGHLQS+GLDFPKN VIAVC
Sbjct: 175 SGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVC 234
Query: 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 296
PKGMGPSVRRLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQ
Sbjct: 235 PKGMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 294
Query: 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGML 356
EY+SDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGML
Sbjct: 295 EYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGML 354
Query: 357 AVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPA 416
AVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPA
Sbjct: 355 AVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPA 414
Query: 417 FPMGKIDQTRI 427
FPMGKIDQTR+
Sbjct: 415 FPMGKIDQTRM 425
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/425 (77%), Positives = 367/425 (86%), Gaps = 20/425 (4%)
Query: 14 KFSPSPSSETLKEALKHLNLASF--SSTAKSLRALKTT-------TGRGSALSAWMASET 64
K SP PS+ LNL SST K+ R+LK G GSALSA M S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI 302
SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316
Query: 303 FGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSF 362
FGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS
Sbjct: 317 FGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSL 376
Query: 363 SGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKI 422
S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKI
Sbjct: 377 SEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKI 436
Query: 423 DQTRI 427
DQTR+
Sbjct: 437 DQTRM 441
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/356 (87%), Positives = 335/356 (94%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 307
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 308 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 367
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTR+
Sbjct: 368 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRM 423
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 153/283 (54%), Gaps = 15/283 (5%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171
+ + +IG+GSQG Q NLRD+ + V VG+RK +S+ +A G+ L D
Sbjct: 84 DTLALIGYGSQGHGQGLNLRDN------GLNVIVGVRKNGKSWEDAIQDGWVP-GKNLFD 136
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
+ E IS +V+ L+SDAAQ++ + I + L SHGF ++ P ++
Sbjct: 137 VDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVD 196
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+ VA+GS + +
Sbjct: 197 VILVAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYE 251
Query: 292 TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIS 351
TT E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 TTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIG 311
Query: 352 TQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYED 391
GM ++++ S ++ ++ + + P LY+ ++
Sbjct: 312 AHGMDWMFDACSTTARRGAIDWTPKFKDALKPVFNNLYDSVKN 354
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 162/314 (51%), Gaps = 18/314 (5%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVL 403
+ +I G+ ++ + S ++ ++L E Y++V G+E + +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLE 364
Query: 404 AG-----RRFYEKE 412
R Y+KE
Sbjct: 365 YNSAPNYRELYDKE 378
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P06168|ILV5_YEAST Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 140/276 (50%), Gaps = 22/276 (7%)
Query: 129 NLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188
NLRD+ + V +G+RK S+ A G+ L + + I V+ L+SD
Sbjct: 95 NLRDN------GLNVIIGVRKDGASWKAAIEDGWVP-GKNLFTVEDAIKRGSYVMNLLSD 147
Query: 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248
AAQ++ + I + L SHGF ++ PK++ VI V PKG G +VR L+
Sbjct: 148 AAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTHVEPPKDLDVILVAPKGSGRTVRSLF 207
Query: 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308
+G+ GINSS+AV DV G+A A +VA+GS + + TT E+E SD++GERG
Sbjct: 208 KEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGC 262
Query: 309 LLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK 368
L+G +HG+ + + ENG + A+ TVE T + +I GM +Y++ S ++
Sbjct: 263 LMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARR 322
Query: 369 EFEKAYSASYYPCME-----ILYECYEDVAAGSEIR 399
+ +YP + + + YE G+E +
Sbjct: 323 G-----ALDWYPIFKNALKPVFQDLYESTKNGTETK 353
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 25/233 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
T + E +D+FGE+ +L G ++++ F E G +LAY EC+
Sbjct: 179 IETNFKDETETDLFGEQAVLCGGSAELIKAGFDTLVEGGYPAELAY---FECM 228
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 31/236 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
TT ++E +D+FGE+ +L G ++++ F E G ++AY EC+
Sbjct: 178 GVIKTTFKEETETDLFGEQAVLCGGTTSLIKAGFETLVEAGYQPEIAY---FECLN 230
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 29/244 (11%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLG 170
+I VIG+GSQG A AQNLRDS D+++ G+R G +SF +A+ GF T E G
Sbjct: 19 KKIAVIGYGSQGHAHAQNLRDS----GHDVII--GVRHG-KSFDKAKEDGFDTYEVG--- 68
Query: 171 DIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFP 227
E +D++++L D Q D Y ++I + LG +HGF G++++ P
Sbjct: 69 ---EATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA-----P 120
Query: 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287
+++ V V PKG G VRR Y +G G+ S +AV+Q+ G A N+AL W+ +GS
Sbjct: 121 EDVDVFMVAPKGPGHLVRRTYTEG-----FGVPSLYAVYQNPTGNAENIALDWAKGIGSA 175
Query: 288 FT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345
TT ++E D+FGE+ +L+G + ++E+ F TE G LAY + + I
Sbjct: 176 RVGLLVTTFKEETEEDLFGEQAVLMGGLTHLIEAGFEVLTEAGYAPQLAYFEVLHEMKLI 235
Query: 346 ISKI 349
+ I
Sbjct: 236 VDLI 239
|
Streptococcus mutans (taxid: 1309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 434 | ||||||
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.937 | 0.692 | 0.835 | 0.0 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.974 | 0.724 | 0.808 | 0.0 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.905 | 0.667 | 0.843 | 0.0 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.912 | 0.675 | 0.845 | 0.0 | |
| 356543900 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.912 | 0.675 | 0.842 | 0.0 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.912 | 0.674 | 0.845 | 0.0 | |
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.940 | 0.695 | 0.831 | 0.0 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.864 | 0.631 | 0.877 | 0.0 | |
| 449438145 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.974 | 0.719 | 0.796 | 0.0 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.864 | 0.634 | 0.872 | 0.0 |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/414 (83%), Positives = 375/414 (90%), Gaps = 7/414 (1%)
Query: 21 SETLKEALKHL--NLASFSSTA-KSLRA--LKTTT--GRGSALSAWMASETALKTPFLLD 73
++TLK +L NL SS A +SLRA L T++ G GSAL+A M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DEYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV 313
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAV
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 318
Query: 314 HGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TE+G +EDLAYKNTVECITGIISK ISTQGMLAVYN+ S + KKEFE A
Sbjct: 319 HGIVESLFRRYTEHGTSEDLAYKNTVECITGIISKTISTQGMLAVYNALSEDGKKEFEAA 378
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
YSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEK+GLPAFPMGKIDQTR+
Sbjct: 379 YSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKDGLPAFPMGKIDQTRM 432
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/429 (80%), Positives = 375/429 (87%), Gaps = 6/429 (1%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSST---AKSLRALKTTTGRGSALSAW 59
+AT FS +PK P+P T K +L++ +KS ++L+ G GSA+ A
Sbjct: 2 SATASFSATLPK--PTPFLSTPKSISSSSSLSTLGFLSIRSKSFKSLRANGGGGSAVGAC 59
Query: 60 -MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIG 118
M S A+K LDFET+VFKK+ ISLA DEYIVRGGRDLF LLPDAF GI QIGVIG
Sbjct: 60 SMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGRDLFKLLPDAFKGIKQIGVIG 119
Query: 119 WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178
WGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR+AGFTEENGTLGDI+ET+SG
Sbjct: 120 WGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEARSAGFTEENGTLGDIWETVSG 179
Query: 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238
SDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPK
Sbjct: 180 SDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPK 239
Query: 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298
GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY
Sbjct: 240 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEY 299
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+SDIFGERGILLGAVHGIVESLFRR+TENGM+ED AYKNTVECITGIISK ISTQGMLAV
Sbjct: 300 KSDIFGERGILLGAVHGIVESLFRRYTENGMSEDEAYKNTVECITGIISKTISTQGMLAV 359
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418
YNS S E KK+FE AYSASYYPCM+ILYECYEDVA GSEIRSVVLAGRRFYE++GLPAFP
Sbjct: 360 YNSLSEEGKKQFETAYSASYYPCMDILYECYEDVACGSEIRSVVLAGRRFYERDGLPAFP 419
Query: 419 MGKIDQTRI 427
MGKIDQTR+
Sbjct: 420 MGKIDQTRM 428
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/396 (84%), Positives = 359/396 (90%), Gaps = 3/396 (0%)
Query: 35 SFSSTAKSLRALKTTTGR--GSALSAWMASETALKTPFL-LDFETSVFKKDMISLADRDE 91
S S ++K+ + LK + G G L A M S P + LDFETSVFKK+ +SLA DE
Sbjct: 38 SSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLAGHDE 97
Query: 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151
YIVRGGRDLF+LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GLRKGS
Sbjct: 98 YIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGS 157
Query: 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211
RSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLS
Sbjct: 158 RSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLS 217
Query: 212 HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271
HGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDG
Sbjct: 218 HGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDG 277
Query: 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNE 331
RAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+E
Sbjct: 278 RATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSE 337
Query: 332 DLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYED 391
D AYKNTVECITGIIS+ IST+GMLAVYNS + E KKEFE AYSAS+YPCM+ILYECYED
Sbjct: 338 DEAYKNTVECITGIISRTISTKGMLAVYNSLTPEGKKEFETAYSASFYPCMDILYECYED 397
Query: 392 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
VA+GSEIRSVVLAGRRFYEKEGLP FPMGKIDQTR+
Sbjct: 398 VASGSEIRSVVLAGRRFYEKEGLPDFPMGKIDQTRM 433
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/400 (84%), Positives = 366/400 (91%), Gaps = 4/400 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTR+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRM 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/400 (84%), Positives = 366/400 (91%), Gaps = 4/400 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SL+ + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+T+N
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTDN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSASYYPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASYYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTR+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRM 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/400 (84%), Positives = 366/400 (91%), Gaps = 4/400 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTR+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRM 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/416 (83%), Positives = 373/416 (89%), Gaps = 8/416 (1%)
Query: 20 SSETLKEALKH--LNLASFSSTAKSL-----RALKTTTGRGSALSAWMASE-TALKTPFL 71
+++TLK K NL+ SS+ SL RA TT GSA++A M S A+K P
Sbjct: 17 ATKTLKHPTKTSVHNLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTN 76
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDFETSVFKK+ I+LA +EYIVRGGRDLFNLLPDAF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 77 LDFETSVFKKEKINLAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLR 136
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAE KSDI+VK+GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQ
Sbjct: 137 DSLAETKSDILVKIGLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQ 196
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYE++FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 197 ADNYEQVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQG 256
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 257 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 316
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVESLFRR+TENGM E+LAYKNTVECITGIISK IST+GMLAVYN+ + E+KKEFE
Sbjct: 317 AVHGIVESLFRRYTENGMAEELAYKNTVECITGIISKTISTKGMLAVYNALTEEEKKEFE 376
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
AYSAS+YPCM+ILYECYEDVA GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTR+
Sbjct: 377 TAYSASFYPCMDILYECYEDVATGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRM 432
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/375 (87%), Positives = 347/375 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+LSA M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 304 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 363
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 364 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 423
Query: 413 GLPAFPMGKIDQTRI 427
GLPAFPMG IDQTR+
Sbjct: 424 GLPAFPMGNIDQTRM 438
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438145|ref|XP_004136850.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] gi|449526744|ref|XP_004170373.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/437 (79%), Positives = 377/437 (86%), Gaps = 14/437 (3%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKEALKHLNLA-----SFSSTAKSLRALKTT-----T 50
MAAAT F+ P S S S++TLK A LA SS++ L ALK
Sbjct: 1 MAAATTHFA---PSISAS-SAKTLKHAAALHPLAPSSLSFLSSSSSGLNALKAVGISAAN 56
Query: 51 GRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
G GSAL A M S A+K LDF+TSVFKK+ ++LA DEYIVRGGRDLF LLP+AF G
Sbjct: 57 GIGSALGARMVSVPAIKPLISLDFDTSVFKKEKVNLAGHDEYIVRGGRDLFPLLPEAFKG 116
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I +IGVIGWGSQ PAQAQNLRDSLAEAKSDIVVK+GLRKGSRSFAEARA GF+EENGTLG
Sbjct: 117 IKKIGVIGWGSQAPAQAQNLRDSLAEAKSDIVVKIGLRKGSRSFAEARAVGFSEENGTLG 176
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI 230
DIYETIS SDLV+LLISD+AQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI
Sbjct: 177 DIYETISESDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNI 236
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTF
Sbjct: 237 SVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTF 296
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM E+LAYKNTVE ITGIIS+ I
Sbjct: 297 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMAEELAYKNTVESITGIISRTI 356
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYE 410
ST+GMLAVYNSFS ++KKEFE+AYSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFYE
Sbjct: 357 STKGMLAVYNSFSPDEKKEFERAYSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYE 416
Query: 411 KEGLPAFPMGKIDQTRI 427
KEGLPAFPMG IDQTR+
Sbjct: 417 KEGLPAFPMGNIDQTRM 433
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/375 (87%), Positives = 348/375 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRI 427
GLPAFPMG IDQTR+
Sbjct: 421 GLPAFPMGNIDQTRM 435
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 434 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 0.983 | 0.722 | 0.774 | 3.1e-170 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.981 | 0.715 | 0.733 | 1.9e-163 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.866 | 0.650 | 0.806 | 1.3e-157 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.679 | 0.737 | 0.338 | 3.2e-33 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.725 | 0.787 | 0.308 | 1.1e-32 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.682 | 0.732 | 0.318 | 6e-32 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.619 | 0.672 | 0.313 | 2e-31 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.652 | 0.716 | 0.310 | 3e-30 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.479 | 0.630 | 0.334 | 3.7e-25 | |
| TIGR_CMR|GSU_1909 | 338 | GSU_1909 "ketol-acid reductois | 0.525 | 0.674 | 0.307 | 3.3e-22 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1655 (587.6 bits), Expect = 3.1e-170, P = 3.1e-170
Identities = 337/435 (77%), Positives = 365/435 (83%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----R 52
MAAAT + + SPS SS+TL L N+ SS++KSLR+L T
Sbjct: 1 MAAATSSIAPSLSCPSPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGAT 60
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRI 427
GLPAFPMG IDQTR+
Sbjct: 421 GLPAFPMGNIDQTRM 435
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
Identities = 322/439 (73%), Positives = 363/439 (82%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKH--LNLASF--SSTAKSLRALKTT-------T 50
A A FS + + +S+ LK++ K LNL SST K+ R+LK
Sbjct: 3 ATAATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGAN 62
Query: 51 GRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAF 108
G GSALSA M S ++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF
Sbjct: 63 GGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAF 122
Query: 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168
GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGT
Sbjct: 123 KGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGT 182
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK 228
LGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI QS+G DFPK
Sbjct: 183 LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 242
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
NI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPF
Sbjct: 243 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPF 302
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK 348
TFATTLEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK
Sbjct: 303 TFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISK 362
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRF
Sbjct: 363 TISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRF 422
Query: 409 YEKEGLPAFPMGKIDQTRI 427
YEKEGLPAFPMGKIDQTR+
Sbjct: 423 YEKEGLPAFPMGKIDQTRM 441
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
Identities = 304/377 (80%), Positives = 333/377 (88%)
Query: 52 RGSALSAWMASETALKTPF-LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
R A++A +A+ A+ LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEY+SDIFGERGILLGAVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK I
Sbjct: 287 ATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTI 346
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYE 410
S +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYE
Sbjct: 347 SKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYE 406
Query: 411 KEGLPAFPMGKIDQTRI 427
KEGLPAFPMG IDQTR+
Sbjct: 407 KEGLPAFPMGNIDQTRM 423
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 106/313 (33%), Positives = 157/313 (50%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RKGS S+ A G+
Sbjct: 77 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKGS-SWEAAVEDGWV 128
Query: 164 E-ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSM 222
EN L ++ E IS +++ L+SDAAQ++ + I +
Sbjct: 129 PGEN--LFEVDEAISRGTIIMDLLSDAAQSETWFHIKPQLTEGKTLYFSHGFSPVFKDLT 186
Query: 223 GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282
++ P NI VI PKG G +VR L+ +G+ GINSS+AV DV G+A A+ ++
Sbjct: 187 HVEPPSNIDVILAAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAEEKAIAMAI 241
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A+GS + + TT E+E SD++GERG L+G +HG+ + + ENG A+ TVE
Sbjct: 242 AIGSGYVYKTTFEREVNSDLYGERGCLMGGIHGMFLAQYEVLRENGHTPSEAFNETVEEA 301
Query: 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSV 401
T + +I GM +Y++ S ++ Y + E YE V GSE RS+
Sbjct: 302 TQSLYPLIGKYGMDYMYDACSTTARRGALDWYPRFKDALKPVFEELYESVKNGSETKRSL 361
Query: 402 VLAGRRFYEKEGL 414
R Y KE L
Sbjct: 362 EFNSRSDY-KERL 373
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 102/331 (30%), Positives = 164/331 (49%)
Query: 84 ISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS AD E + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323
AV QDV G A A+ VA+GS + + TT E+E SD++GERG L+G +HG+ + +
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEV 281
Query: 324 FTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
E G + A+ TVE T + +I GM +Y + S ++ +S+ + ++
Sbjct: 282 LRERGHSPSEAFNETVEEATQSLYPLIGANGMDWMYAACSTTARRGAID-WSSRFKDNLK 340
Query: 384 ILY-ECYEDVAAGSEI-RSVVLAGRRFYEKE 412
L+ E Y+ V G+E RS+ ++ Y ++
Sbjct: 341 PLFNELYDSVRDGTETQRSLDYNSQKDYREK 371
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 100/314 (31%), Positives = 157/314 (50%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVV 402
+ +I G+ ++ + S ++ ++L E Y++V G+E RS+
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLE 364
Query: 403 LAG----RRFYEKE 412
R Y+KE
Sbjct: 365 YNSAPNYRELYDKE 378
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 90/287 (31%), Positives = 147/287 (51%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 FEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAN 311
Query: 354 GMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSE 397
GM +Y + S ++ ++ + + P LY+ +D GSE
Sbjct: 312 GMDWMYEACSTTARRGAIDWSPRFKDALKPVFNQLYDSVKD---GSE 355
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 92/296 (31%), Positives = 144/296 (48%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G+
Sbjct: 71 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDGWV 123
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
L + + I V+ L+SDAAQ++ + I +
Sbjct: 124 PGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTH 182
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +VA
Sbjct: 183 VEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVA 237
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS + + TT E+E SD++GERG L+G +HG+ + + ENG + A+ TVE T
Sbjct: 238 IGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEAT 297
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
+ +I GM +Y++ S ++ Y + + YE G+E +
Sbjct: 298 QSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETK 353
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 3.7e-25, P = 3.7e-25
Identities = 78/233 (33%), Positives = 122/233 (52%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-- 289
V V PK G VRR+Y++GK G+ AV+QD G+A ++AL ++ +G
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGK-----GVPGLIAVYQDATGKAKDLALAYAKGIGCTRAGV 179
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
F TT ++E +D+FGE+ +L G V ++++ F E G ++AY EC+
Sbjct: 180 FETTFKEETETDLFGEQAVLCGGVTHLIKAGFETLVEAGYAPEMAY---FECL 229
|
|
| TIGR_CMR|GSU_1909 GSU_1909 "ketol-acid reductoisomerase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 3.3e-22, P = 3.3e-22
Identities = 79/257 (30%), Positives = 128/257 (49%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ VIG+GSQG A A NL+DS D+VV GL+ S S A+A AG T +
Sbjct: 18 RVAVIGYGSQGHAHANNLKDSGV----DVVV--GLKADSSSVAKATGAGLT-----VLPT 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK-NI 230
+ + G+D+V++L+ D Q D Y E++ +K + Q P+ +I
Sbjct: 67 ADAVKGADVVMILLPDEIQGDVYREEVGPYLKQGAYLAFGHGFNIHFGQIT----PRPDI 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT- 289
VI PKG G VR Y +G G+ A+H D G + +VAL ++ A+G
Sbjct: 123 NVIMAAPKGPGHLVRHEYTRG-----GGVPCLIAIHHDPSGNSRDVALAYASAIGGGRAG 177
Query: 290 -FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
T+ ++E +D+FGE+ +L G + ++++ F E G + ++AY EC+ T +I
Sbjct: 178 IIETSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYSPEMAY---FECLHETKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
+I G+ + S S
Sbjct: 235 VDLIYEGGIANMRYSIS 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.872 | 0.8640 | 0.6345 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8735 | 0.8202 | 0.6159 | yes | no |
| Q01292 | ILV5_SPIOL | 1, ., 1, ., 1, ., 8, 6 | 0.7788 | 0.9331 | 0.6806 | N/A | no |
| O82043 | ILV5_PEA | 1, ., 1, ., 1, ., 8, 6 | 0.7935 | 0.9700 | 0.7246 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 434 | |||
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 8e-51 | |
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 1e-50 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 3e-41 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 1e-40 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 1e-28 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 3e-17 | |
| pfam01450 | 146 | pfam01450, IlvC, Acetohydroxy acid isomeroreductas | 6e-10 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 8e-51
Identities = 84/231 (36%), Positives = 123/231 (53%), Gaps = 22/231 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS + V VGLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340
TT ++E SD+FGE+ +L G + ++++ F E G +LAY TV
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVH 216
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-50
Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 30/235 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340
A TT ++E +D+FGE+ +L G + ++++ F E G +LAY +
Sbjct: 177 RAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLH 231
|
Length = 338 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-41
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 31/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A TT ++E +D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 177 AGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
|
Length = 330 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-40
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-28
Identities = 89/262 (33%), Positives = 138/262 (52%), Gaps = 30/262 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGFE-----VMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISK 348
TT ++E +D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 349 IISTQGMLAVYNSFSGEDKKEF 370
++ G+ + +S S D EF
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEF 255
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-17
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGERGILLG 311
A LE E +SD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
|
Length = 487 |
| >gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-10
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD+FGE+ +L G + G++++ F E G + ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 354 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVL---A 404
G+ + +S S E+ + + + M+ E +D+ G+ + +L A
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLENSA 114
Query: 405 GRRFYEKE 412
G KE
Sbjct: 115 GNPRLNKE 122
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 146 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 434 | |||
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.97 | |
| PF01450 | 145 | IlvC: Acetohydroxy acid isomeroreductase, catalyti | 99.97 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.96 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.95 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.95 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.94 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.94 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.92 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.91 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.83 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.76 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.71 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.7 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.7 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.68 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.68 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.63 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.6 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.6 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.57 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.57 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.56 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.56 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.55 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.53 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.48 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.45 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.45 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.44 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.43 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.41 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.4 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.4 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.38 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.38 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.36 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.34 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.34 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.3 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.28 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.28 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.28 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.27 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.27 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.26 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.25 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.25 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.23 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.23 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.22 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.21 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.2 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.16 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.14 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.13 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.11 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.09 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.08 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.05 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.04 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.03 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.01 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.99 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.99 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.98 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.98 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.98 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.97 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.95 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.93 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.92 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.9 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.88 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.88 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.88 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.88 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.87 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.85 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.84 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.84 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.84 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.84 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.83 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.81 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.81 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.8 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.79 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.78 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 98.73 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.73 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.69 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.68 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.67 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.67 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.66 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.66 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.66 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.64 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.62 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.62 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.6 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.58 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.58 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.56 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.55 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.52 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.52 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.49 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.46 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.46 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.45 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.44 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.43 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.42 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.39 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.35 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.32 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.32 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.25 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.24 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.23 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.2 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.19 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.15 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.1 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.07 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.07 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.05 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.05 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.03 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.99 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.97 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.96 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 97.95 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.91 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.88 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.83 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.83 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.8 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.77 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.76 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.71 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.7 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.69 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.68 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.67 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.66 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.64 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.58 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.56 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.54 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.53 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.45 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.45 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.45 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.42 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.42 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.41 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.4 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.37 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.36 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.35 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.32 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.3 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.3 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.28 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.28 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.26 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.25 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.2 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.19 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.17 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.17 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.13 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.12 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.1 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.09 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.08 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.03 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.03 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.01 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.01 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.97 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.97 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.97 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.97 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.94 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.92 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.91 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.91 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.9 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.88 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.87 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.87 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.85 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 96.82 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.81 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.8 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.78 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.78 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.77 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.67 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.66 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.61 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 96.58 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.57 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.53 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.51 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.51 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.42 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.41 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.35 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.33 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.23 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 96.23 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.21 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.19 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.19 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 96.18 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.18 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 96.16 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.16 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.09 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.08 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.99 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.99 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.97 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.97 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.94 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.91 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.86 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.79 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.79 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.79 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.7 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.7 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.69 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.6 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.51 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.47 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.44 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.43 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.37 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.35 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.34 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.2 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.16 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 95.14 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.09 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.09 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 95.04 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.04 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.03 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.01 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.97 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.89 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 94.88 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.86 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.62 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.59 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 94.58 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.57 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.49 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.46 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 94.42 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.41 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.38 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.37 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.34 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.33 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.33 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.31 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.31 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.26 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.26 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.26 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.2 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.2 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 94.13 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.08 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.07 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 94.06 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 93.95 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.94 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.93 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.91 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.88 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.85 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.83 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 93.75 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.73 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.71 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.68 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.65 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 93.65 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.64 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 93.64 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.64 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 93.63 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.63 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 93.63 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.59 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.56 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.54 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.52 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.51 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.49 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.46 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.43 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 93.4 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 93.28 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 93.24 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.18 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.13 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.08 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.08 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.07 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.07 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.04 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 92.99 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.95 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 92.9 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 92.87 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.84 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.81 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.81 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 92.8 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.78 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.78 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.76 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.73 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.68 | |
| PLN00106 | 323 | malate dehydrogenase | 92.64 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.63 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 92.6 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.59 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.56 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.55 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.53 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 92.48 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.45 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 92.41 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.37 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 92.35 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.34 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 92.34 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.29 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 92.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 92.05 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 92.04 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 91.9 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.85 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 91.76 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.75 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 91.64 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 91.37 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 91.35 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 91.34 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.33 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 91.32 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 91.31 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.17 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 91.12 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 91.08 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 91.05 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.99 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 90.9 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 90.8 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 90.79 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.73 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 90.64 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 90.47 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 90.42 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.42 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 90.38 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.23 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.18 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 90.02 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 89.97 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 89.94 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 89.79 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 89.73 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 89.7 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.63 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 89.61 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 89.56 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 89.55 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.46 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 89.44 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 89.43 | |
| PRK08223 | 287 | hypothetical protein; Validated | 89.38 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 89.17 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 89.09 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 89.03 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 89.0 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 88.85 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 88.65 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.52 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 88.41 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 88.31 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 88.29 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.23 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 88.19 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 88.15 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 88.13 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 88.09 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.07 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 88.05 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 88.04 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 88.02 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 87.9 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 87.82 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 87.81 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 87.79 | |
| PRK07411 | 390 | hypothetical protein; Validated | 87.65 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 87.63 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 87.61 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.6 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 87.58 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 87.52 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 87.48 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 87.36 | |
| PLN02477 | 410 | glutamate dehydrogenase | 87.27 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.22 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 87.15 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.07 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 86.95 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 86.9 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 86.86 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 86.68 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 86.63 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 86.55 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.45 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.37 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.35 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 86.3 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 86.28 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 86.16 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 86.15 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 85.99 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 85.98 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 85.96 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.94 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 85.84 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 85.79 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 85.75 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 85.71 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 85.67 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 85.63 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 85.55 | |
| PRK05717 | 255 | oxidoreductase; Validated | 85.34 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 85.28 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.28 | |
| PLN02661 | 357 | Putative thiazole synthesis | 85.2 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 85.19 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.17 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 85.04 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 85.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 84.86 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 84.85 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 84.56 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 84.54 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 84.47 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.44 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 84.26 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 84.07 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 83.92 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 83.91 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 83.78 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 83.62 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 83.57 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 83.55 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 83.51 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 83.5 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 83.49 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 83.26 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 83.2 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 82.92 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 82.87 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 82.83 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 82.76 |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-77 Score=583.16 Aligned_cols=305 Identities=32% Similarity=0.514 Sum_probs=283.0
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCC
Q 013877 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
+..+ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|+++||. +.+++|++++||
T Consensus 10 da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~AD 76 (338)
T COG0059 10 DADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRAD 76 (338)
T ss_pred cCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCC
Confidence 3444 58999 9999999999999999999999 999999999999999999999999 589999999999
Q ss_pred EEEEeecchHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 181 LVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 181 iViLavpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
+|++++||..|.+||+ +|.|+|++|++|.|+|||++++. ++.||+|++|+||+||+||+.||++|++| +|+
T Consensus 77 vim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~Gv 148 (338)
T COG0059 77 VVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGV 148 (338)
T ss_pred EEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCc
Confidence 9999999999999999 79999999999999999999875 57999999999999999999999999997 899
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~ 337 (434)
|++|+||||+||+++++|++|+.++|++| +++|||++|+++||||||++|||++.++|+++||++|++|++||+||++
T Consensus 149 P~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE 228 (338)
T COG0059 149 PALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFE 228 (338)
T ss_pred eeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhc-cc--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCC
Q 013877 338 TVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-SY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGL 414 (434)
Q Consensus 338 ~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~-~~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~ 414 (434)
|+|+++ +|++||+|+||..|+++|| +|++||.|... ++ .-+++.|+++|++||||+|+++|+++++..+.+ |
T Consensus 229 ~lhE~k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~g~p~--l 303 (338)
T COG0059 229 CLHELK-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQAGRPK--L 303 (338)
T ss_pred HHHHHH-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhcCCHH--H
Confidence 999998 9999999999999999999 67789998443 22 236889999999999999999999999886333 4
Q ss_pred CCCcccccccccccccCC
Q 013877 415 PAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 415 ~~~~~~~~~~~~~w~~~~ 432 (434)
.+ .....++++||+++.
T Consensus 304 ~~-~r~~~~~~~iEkvg~ 320 (338)
T COG0059 304 EA-LREETAEHEIEKVGK 320 (338)
T ss_pred HH-HHHHhhcChHHHHHH
Confidence 43 567788999999863
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-74 Score=589.89 Aligned_cols=323 Identities=28% Similarity=0.435 Sum_probs=298.8
Q ss_pred ccccccchhhhhhhh-----cccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 013877 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv 145 (434)
.|||||++|++|+++ |++++| |++.+..|+| |+|+|||||+||+++|+||+++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 777777 9888999999 9999999999999999999999 999999
Q ss_pred EecCC-----chhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhh
Q 013877 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (434)
Q Consensus 146 g~r~~-----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~ 220 (434)
++|++ ++++++|.++||. +.+++|++++||+|++++||..+..++++|+|+||+|++|.++|||++++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 6789999999997 568999999999999999999988999999999999999999999999765
Q ss_pred cccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 013877 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (434)
Q Consensus 221 ~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~--qdvsg~a~e~a~~la~aiG~~~--~iettf~~ 296 (434)
++.||+|+|||||+||+||+.||++|++| +|+|++|||| ||++|+++++|++|+.++|++| +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 57999999999999999999999999997 8999999999 8999999999999999999997 89999999
Q ss_pred hcccccccchhhhhchH-----------------------------------------H---------------------
Q 013877 297 EYRSDIFGERGILLGAV-----------------------------------------H--------------------- 314 (434)
Q Consensus 297 E~~~Dlfge~tvL~G~~-----------------------------------------~--------------------- 314 (434)
|+++||||||++|||++ .
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i~e~GI~~m~d~~S~tak~ga~~~~~~~ 291 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKIRAFELSEQL 291 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHHHhccHHHHHHhccchhhcccccccHHH
Confidence 99999999999999999 3
Q ss_pred ----------------------------------------------------------------------HHHHHH----
Q 013877 315 ----------------------------------------------------------------------GIVESL---- 320 (434)
Q Consensus 315 ----------------------------------------------------------------------aliea~---- 320 (434)
++++++
T Consensus 292 k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r~~~~~~~~E~~~~~~~~~~~~~~~erG~Lm~a~~~~g~e~~ 371 (487)
T PRK05225 292 KEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWREETGKTAFENAPQYEGKISEQEYFDKGVLMVAMVKAGVELA 371 (487)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHHHHhhcCchhhcccccccchhHHHHhhhhHHHHHHHhhhHHH
Confidence 566666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh-hhccchhHHHHHHHHHHhccCChhHH
Q 013877 321 FRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA-YSASYYPCMEILYECYEDVAAGSEIR 399 (434)
Q Consensus 321 ~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~-~~~~~~p~~~~m~e~~~~v~~G~f~r 399 (434)
||++|++||+||.||++++|+++ ||++||+|+|+.+|+++|| +|||||+| +..+.. ..|+++|++||+|+|+|
T Consensus 372 FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~g~~vi---~~mk~~l~~Iq~G~fak 445 (487)
T PRK05225 372 FETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLFSHAAV---PLLKDFMATLQPGDLGK 445 (487)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCcccChHHH---HHHHHHHHHcCCCHHHh
Confidence 99999999999999999999997 9999999999999999999 78899998 443434 59999999999999999
Q ss_pred HHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 400 SVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+| .+|+.. ++.|.+ ...++++.+||+||.
T Consensus 446 ~~-~e~~~g--~~~l~~-~~~~~~~h~iE~vG~ 474 (487)
T PRK05225 446 GL-PSNAVD--NAQLRD-VNEAIRNHPIEQVGK 474 (487)
T ss_pred hH-HhccCC--cHHHHH-HHHHHhcCcHHHHHH
Confidence 99 887776 445665 789999999999974
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-71 Score=553.10 Aligned_cols=302 Identities=29% Similarity=0.484 Sum_probs=277.9
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+.|+| ++|||||+|+||.++|+||+++ |++|++++|+ .++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3578999 9999999999999999999999 9999998876 6678888888987 458999999999999
Q ss_pred EeecchHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEE
Q 013877 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (434)
Q Consensus 184 Lavpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~al 262 (434)
+++|+..+.+++. +++++|++|++|+++|||+++|. .+.||+|+|||||+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988889986 69999999999999999999875 57999999999999999999999999997 899999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013877 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (434)
Q Consensus 263 iav~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e 340 (434)
|||+||+||++.++|++|+.+||++| +++|||++|+++||||||++|||++.++|+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhcc-c--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCC
Q 013877 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS-Y--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 417 (434)
Q Consensus 341 ~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~-~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~ 417 (434)
+++ ||++||+|+|+.+|+++|| +|+|||+|.+.. . ..+|+.|+++|++||+|+|||+|+.+|+. .+..|.+
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~~--g~~~~~~- 302 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQA--GRPTYNA- 302 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhhC--CCHHHHH-
Confidence 997 9999999999999999999 788899986553 2 34899999999999999999999999874 4445554
Q ss_pred cccccccccccccCC
Q 013877 418 PMGKIDQTRIPINTS 432 (434)
Q Consensus 418 ~~~~~~~~~~w~~~~ 432 (434)
.+.++++..||+||.
T Consensus 303 ~~~~~~~h~ie~vg~ 317 (335)
T PRK13403 303 MKKAEQNHQLEKVGE 317 (335)
T ss_pred HHHHHhcCcHHHHHH
Confidence 678889999999873
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=515.95 Aligned_cols=302 Identities=30% Similarity=0.506 Sum_probs=279.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
...++| ++|+|||+|+||.++|++|+++ |++|++++++++++++.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 467889 9999999999999999999999 9999989888788889999999873 589999999999999
Q ss_pred eecchHHHHHH-HHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 185 avpd~a~~~vl-~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
++||..+.+++ ++|.++|++|++|+++|||++++.+ +.||++++|||+|||+|++.+|+.|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 6799999999999999999998875 4889999999999999999999999997 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
++++|+|+++++++++|+.++|+++ +++|||++|+++||||||++|||++.++++++|+++|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhc-cc--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCc
Q 013877 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-SY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418 (434)
Q Consensus 342 l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~-~~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~ 418 (434)
++ ||++||+|+|+.+|+++|| +|+|||+|... .. ..+|+.|+++|++||+|+|+|+|+++|+. .+..|.+ .
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~~--~~~~~~~-~ 305 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENKA--GRPTFKA-L 305 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhcC--CcHHHHH-H
Confidence 97 8999999999999999999 78889998554 22 34899999999999999999999999874 4445665 7
Q ss_pred ccccccccccccCC
Q 013877 419 MGKIDQTRIPINTS 432 (434)
Q Consensus 419 ~~~~~~~~~w~~~~ 432 (434)
..++++.+||+||.
T Consensus 306 ~~~~~~~~~e~~g~ 319 (330)
T PRK05479 306 RREEAEHPIEKVGA 319 (330)
T ss_pred HHHHhcCcHHHHHH
Confidence 88899999999873
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=481.86 Aligned_cols=297 Identities=31% Similarity=0.475 Sum_probs=264.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|+| |||+|||+|+||.++|++|+++ |++|++++++++++++.+.+.|+. +.++.|++++||+|++++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 998888888766777888888986 3568899999999999999
Q ss_pred chHHH-HHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+.+. .+.++|.+.++++.+|+++|||++++++. .||++++|||+|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 99555 45567999999999999999999998865 788899999999999999999999997 8999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~G 344 (434)
+|+++++++++++|+.++|.+| +++|+|++|+++|+|+++|+|||++|+++.+++|++|++||+||+||++++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999996 89999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcHHHHHHhcCCcchhhhhhhhhcc-c-hhHHHHHHHHHHhccCChhHHHHHHhcCc--cchhcCCCCCccc
Q 013877 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS-Y-YPCMEILYECYEDVAAGSEIRSVVLAGRR--FYEKEGLPAFPMG 420 (434)
Q Consensus 345 li~~li~e~G~~~m~~~vssp~~~eyg~~~~~~-~-~p~~~~m~e~~~~v~~G~f~r~~~~~~~~--~~~~~~~~~~~~~ 420 (434)
+++|++++|+..|+|+|| +|+|||+|.... + .-+|+.|+++|++||+|+|+|+|+.+++. +.+++ -..
T Consensus 221 -~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~~~~~~~~~-----~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENEAGKPAFNT-----ARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhccCCcHHHHH-----HHH
Confidence 999999999999999999 577899983332 2 23677999999999999999999987643 33332 244
Q ss_pred ccccccccccCC
Q 013877 421 KIDQTRIPINTS 432 (434)
Q Consensus 421 ~~~~~~~w~~~~ 432 (434)
++++.++|++|.
T Consensus 293 ~~~~~~~e~vg~ 304 (314)
T TIGR00465 293 YESEHEIEKVGK 304 (314)
T ss_pred HHhCCcHHHHHH
Confidence 578999999873
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=311.29 Aligned_cols=161 Identities=44% Similarity=0.715 Sum_probs=138.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|++ |+|+|||||+||+++|+||||| |++|+|++|+++++|++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999999999999998 5799999999999999999
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|..|.++|+ +|.|+|++|++|.|+|||+++|. .+.||+++||+|++||+||+.+|++|++| +|+|++++|+
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 79999999999999999999764 57999999999999999999999999997 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc
Q 013877 267 QDVDGRATNVALGWSVALGSPF 288 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~ 288 (434)
||.||++++++++|+++||++|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999863
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=278.66 Aligned_cols=220 Identities=19% Similarity=0.270 Sum_probs=196.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++||+|||+|+||.+++.+|.++ | .+|++.+|..++..+.+.++|... ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 378888887666556888888873 567889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
+|+...+++.++.+ ..+++ +|++++|+.+..++. .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999998 66676 467999999998877 667 899999999999998 589999 667
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
..++++++.+.+.+|+..+|.. .+..+++|+..|+++|++|+ ++|++.+++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999976 44456689999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
+.| .++|+.++|. ..|+|+||||.-
T Consensus 205 ~~G-aakll~e~~~~p~~Lr~~VtSPGG 231 (266)
T COG0345 205 VAG-AAKLLLESGEHPAELRDQVTSPGG 231 (266)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCcCCCc
Confidence 999 9999999999 899999999963
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=270.20 Aligned_cols=220 Identities=18% Similarity=0.270 Sum_probs=188.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHH-HcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.+++++|.++ |+ +|++.+|+. ...+.+. +.|+.. +.+..|++++||+||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~-~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNV-SNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCH-HHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999988 64 566665543 3344444 477653 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|... |.|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998875 56999999998876 5555668999999999988 589999 557
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
++.++.+..+.+..||..+|.. .+..++.|+..++++||+|+ +++++.+++++.|+++++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999965 22234478888999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
+.| .++|+.++|. ..++|+|+||.-
T Consensus 208 ~~G-~a~ll~~~~~~p~~l~~~V~sPGG 234 (272)
T PRK12491 208 VLG-SAKMVLETGIHPGELKDMVCSPGG 234 (272)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCch
Confidence 999 8999999988 899999999964
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=248.29 Aligned_cols=221 Identities=14% Similarity=0.192 Sum_probs=183.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHH-HHHcC-ccccCCCcCCHHhhhccCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G-~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
|++|+|||+|+||.+++++|+++ | .+|+++.++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999988 7 5677666654332222 22232 221 3577888999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
|+||+...++++++.+++++++ +|++++|+.+..+++ .+|. ..|+|+|||+|..+ |.|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 567999999988876 4443 58999999999988 589998 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~-Gl~~e~A~~~~ 338 (434)
+.+.+++.+.++.+..++..+|... +..+++|+..|+++||+|+ +++++.+++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVM--------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEE--------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5688899999999999999999752 2223477888999999999 789999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 339 VECITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 339 ~e~l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.|++.| .++|+.++|. ..++|+|++|.-
T Consensus 206 ~~~~~G-~a~l~~~~~~~p~~l~~~v~spgG 235 (277)
T PRK06928 206 NFALAG-TGKLLVEEDYTFSGTIERVATKGG 235 (277)
T ss_pred HHHHHH-HHHHHHccCCCHHHHHHhCCCCCh
Confidence 999999 8999999886 999999999963
|
|
| >PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=244.65 Aligned_cols=133 Identities=26% Similarity=0.411 Sum_probs=118.6
Q ss_pred hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh
Q 013877 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (434)
Q Consensus 294 f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~ 373 (434)
|++|+++||||||++|||+++++++++||++|++||+||.||++++|++. +|+++|+++|+.+|+++|| +|++||++
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 67999999999999999999999999999999999999999999999965 9999999999999999999 78889998
Q ss_pred -hhccc-hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 374 -YSASY-YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 374 -~~~~~-~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+..++ .+++++|+++|++|++|+|+|+|+.+++..+.+ |.+ ++++|+++.||+||.
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~g~~~--l~~-~~~~~~~~~~e~VG~ 135 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQAGDPR--LNA-MREKIRNHPIEKVGE 135 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHH--HHH-HHHHHSTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcCCCHH--HHH-HHHhhcCCcchhHHH
Confidence 44333 468899999999999999999999998887766 664 899999999999973
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=237.99 Aligned_cols=214 Identities=18% Similarity=0.250 Sum_probs=178.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||+|||+|+||.+++++|.++ +. ++++.+++..+ .+... ..++.++++++|+||+|+|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 6899999999999999999987 52 35544443211 23332 4577788899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
|+...++++++.++++++.+|++++|+++..++. .++.+..++++|||+|... |.|+.. ++..+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999888777889999999877765 4455557999999999666 367777 56777
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
+++.+..+.+..++..+|.. .+..++.|+..++++||+|+ +++++.+++++.|+++++|++++.|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88889999999999999965 22234467888999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 344 Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
| .++|+.++|. ..|+|+|++|.-
T Consensus 203 G-~a~ll~~~~~~~~~l~~~v~spgG 227 (260)
T PTZ00431 203 G-SVHMVKASDQPVQQLKDDVCSPGG 227 (260)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCCCh
Confidence 9 8999999986 899999999964
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=227.39 Aligned_cols=220 Identities=14% Similarity=0.180 Sum_probs=181.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchh-HHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.+++++|.++ | .+|++.+|..++. ...+...|+.. ..++.++++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 7 5777777654333 33344557654 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
||+.+.++++++.+.++++++|+ +++|+++..+.+ ..+.+.+|++.|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999898888766 469999877765 4456678999999998877 367886 556
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
..+++.+.++.+..++..+|....+ .| ++|+..+.++|++|+ +++++.+.+++.|+++++|+....++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v-----~e---~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVV-----EE---EDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEe-----CH---HHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7778899999999999999964111 22 257777889999997 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
+.| .++++.+++. ..+++.+++|.
T Consensus 210 ~~g-sa~~~~~~~~~~~~l~~~v~spg 235 (279)
T PRK07679 210 MIG-AAEMLKASEKHPSILRKEITSPG 235 (279)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhcCCCc
Confidence 998 7899987665 88999999886
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=221.96 Aligned_cols=221 Identities=15% Similarity=0.175 Sum_probs=178.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---E-EEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~-Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.+++.+|.++ |. + +++..|++. +..+.+...|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 52 3 545555433 3334444456653 467888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
||+.+.++++++.+++++..+|++++|+.+..+++ .++.+..++++|||.+... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998886443567889999888766 5566678999999999866 4789985 456
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
.+.+.++.+.+..++..+|.... ..| +.+...+.++|+.|+ +++++.+.+++.|+++++|++++.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77888999999999999997621 123 245667889999998 889999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHHhcCCcch
Q 013877 343 TGIISKIISTQG-MLAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G-~~~m~~~vssp~~ 367 (434)
.| .++++.+++ ...++|+|++|.-
T Consensus 211 ~g-~~~~~~~~~~~~~l~~~v~spgG 235 (245)
T PRK07634 211 SG-SASMLEQTQDPANLREQVTTPGG 235 (245)
T ss_pred HH-HHHHHhCCCCHHHHHHhCCCCCh
Confidence 99 899998743 3899999999963
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=227.94 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=195.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHH-HHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|||||.|+|..++++++..+ |+ +++.+.. ..++... .+..|... +.+..+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999988 86 4444433 4455555 78888875 566789999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
+|..+.+++.++.+.+..+++| +.++|..+..+++ .++...+|||+|||+|..+ |+|..+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999998877778765 6999999987766 5566779999999999988 588886 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
..+++.++.+++..++..+|.. +|..+++++..|.|+|++|+ ++|++.|.+|+.|+||++|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999976 67888899999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcch-hhhhh
Q 013877 342 ITGIISKIISTQGM--LAVYNSFSGEDK-KEFEK 372 (434)
Q Consensus 342 l~Gli~~li~e~G~--~~m~~~vssp~~-~eyg~ 372 (434)
+.| .++|+.++|. ..|+|.||||.- ..||-
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPgG~TI~gl 238 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPGGTTIYGL 238 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCCcchHHHH
Confidence 999 9999999998 999999999964 23443
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=220.32 Aligned_cols=220 Identities=16% Similarity=0.213 Sum_probs=180.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||+|||+|+||.+++++|.++ |+ +|+++++++....+.+.+.|+.. ..+..|+++++|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5799999999999999999998 87 77777233344456666778764 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+...+++.++.+.++++++ |++++|+.+..+.. ..+.. +++++|||.|... |.+++. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999998988886 45779998766654 23333 7999999999877 356766 5557
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
...+.+..+.+..++..+|.. +.. .| +.|+..+.++|++|+ +++++.+.+++.|+++++|++...+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~~--~~~---~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGKI--WVV---DE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCCE--EEe---CH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777889999999999999962 222 23 366777889999997 789999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.| +++|+.++|. ..|+++|++|.-
T Consensus 206 ~g-s~~l~~~~~~~~~~l~~~v~spgG 231 (266)
T PLN02688 206 LG-AAKMVLETGKHPGQLKDMVTSPGG 231 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCCch
Confidence 98 8999988887 899999999953
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=217.71 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=174.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|+||.+++.+|.++ |+ +|.+.+|+..+....+.+. |+.. ..+..++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 5776666543333333333 5543 457888899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
||....++++++.++++++++| .+++|+.+..++. .++ ..++++|||+|... +.|++. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888765 5777888777755 333 36999999988654 257776 444
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~-~Gl~~e~A~~~~~e 340 (434)
....+.+..+.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+++++|+..+.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667778889999999999964 22334467777899999998 77999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 341 ~l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
++.| .++|+.+++. ..|+|+|++|.
T Consensus 205 ~~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9999 7899998876 99999999996
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=214.81 Aligned_cols=221 Identities=17% Similarity=0.223 Sum_probs=179.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCCchhHHHHHH-cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
|+||+|||+|+||.+++..|.++ | .+|.+.+|+.++ .+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~~-~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPEK-RAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHHH-HHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 47899999999999999999988 7 567767665433 444443 47653 457788889999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
||..+.++++++.+++ +..+|+++.|+....++. .++.+.+++++|||.|... |.|++. +.+.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999887 444667999998776654 4455678999999998655 356776 5567
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
.+.+.++.+.+..|+..+|....+.+ | +.|+..++++|++|+ +++++.+.+++.|+++++|.+.+.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~~~----e---~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWVDD----E---KQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEECC----h---HhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999996422221 2 267788999999886 788999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.| .++++.+.|. ..++++|++|..
T Consensus 207 ~g-~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 207 LG-AAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCCcH
Confidence 99 8999998877 899999999853
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=203.66 Aligned_cols=198 Identities=18% Similarity=0.258 Sum_probs=167.2
Q ss_pred cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcE-EEEeccchhhhh
Q 013877 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (434)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~ 219 (434)
.+|+++.|+.++..+.+.+.|... ..++.++++++|+||||+||+.+.++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 368888876555455556668654 567888999999999999999999999999988776664 579999999888
Q ss_pred hcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcc
Q 013877 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (434)
Q Consensus 220 ~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~ 299 (434)
+. .++.+..++|+|||+|... |.|++. ++...+++.+..+.+..||..+|.. .+..
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--------VELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--------EEEC
Confidence 66 5566678999999999888 478998 5668889999999999999999965 1222
Q ss_pred cccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 300 ~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
++.|+..++++|++|+ +++++.+++++.|+++++|.+++.|++.| .++|+.++|. ..++++|++|..
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~spgG 214 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSPGG 214 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCCcH
Confidence 4467788999999998 88999999999999999999999999999 8999998876 999999999964
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=201.49 Aligned_cols=216 Identities=16% Similarity=0.197 Sum_probs=163.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||||||+|+||.+++++|++. |+ .+.+.+|+.++..+.+... |... +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 75 3455555544433344434 3443 4678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||.|... +.|++.++ ..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~~-~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAIY-PP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEec-CC
Confidence 999999998763 567775 56889999887765 4455668999999998875 36787742 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli 346 (434)
.+.+..++..+|....+ .+|...|+|+..+...+..-.+++++.+.+++.|+|+++|++...+++.| .
T Consensus 133 -------~~~~~~l~~~lG~~~~~----~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G-~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVEC----DSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFAS-L 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEEE----CChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 25789999999976322 24566667765543333333489999999999999999999999999999 8
Q ss_pred HHH-HHHhcH--HHHHHhcCCcch
Q 013877 347 SKI-ISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 347 ~~l-i~e~G~--~~m~~~vssp~~ 367 (434)
++| +.+++. ..|+|+|+||.-
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spgG 224 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKGG 224 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCCc
Confidence 899 577766 899999999964
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=182.91 Aligned_cols=277 Identities=15% Similarity=0.110 Sum_probs=185.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
++|+|||+|+||+++|++|++. |+++.++.+...+ ....+...|+. +....+.++++++||+||+|+|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 9877666554332 22233334443 2223567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 191 ~~~vl~eI~~-~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
..++++++.+ .++++.+|+++++++....+......+....+|..|| ++|... ..+..+....+.|.++++++....
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999875322211113455678999999 656531 233333333446788889988888
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~l 349 (434)
+.++++.++.++..+|+. ++..+.. ..+..+.+.+.+|.++-..+ +...|.+++.++.++.+.+.+ ++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~------~HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAE------EHDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHH------HHhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Cccc
Confidence 999999999999999974 2222212 23466888899998665544 566688889999999998886 6666
Q ss_pred HHHhcHHHHHHhcCCcchhhhhhhhhccchhHHHHHHHHHHhccCCh--hHHHHHHhcCccchhcCCCC
Q 013877 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGS--EIRSVVLAGRRFYEKEGLPA 416 (434)
Q Consensus 350 i~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~~~m~e~~~~v~~G~--f~r~~~~~~~~~~~~~~~~~ 416 (434)
.. +.-....|.++++...-.. ...-..+.|.++.+.|++++ ..++++.+.+ .+|+.++.
T Consensus 221 a~-~~p~~w~di~~~N~~~~~~-----~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~--~~r~~~~~ 281 (359)
T PRK06545 221 AS-SDPGMWRDILESNAEALLD-----ALDEWIEDLDRARDALESGDAEAIAELFDAGK--AGRDRLPG 281 (359)
T ss_pred cC-CCHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHhCcc
Confidence 52 3334444444433221110 11223456667777777666 4556666554 34444554
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-17 Score=160.41 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=151.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCchhHHHHHHcCccccCCCcCCH-HhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViLavpd~ 189 (434)
++|+|||+|.||+++|+.|+.. |+.+ +++.+......+.+.+.|+.. ....+. .+++.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9977 445555556677787788873 222333 67888999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh-HHHHHhhcccccCCCceEEEeecCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~-vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
+..++++++.|++++|++|++..++....++...-..|++++||..||. .|+. ...+ ..+-.+++++.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM-~G~~~~~~l--------f~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPM-FGPEADAGL--------FENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCC-CCCcccccc--------cCCCEEEEcCCCC
Confidence 9999999999999999999999988643332222255666699999994 4552 2223 4567888999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCC
Q 013877 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (434)
Q Consensus 269 vsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl 329 (434)
.+.+.++.+.+++.++|. +++.++.++|++.- +.+++..+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCc
Confidence 888999999999999995 68888888887442 45677777788888877777666
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=155.28 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=133.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||+++|+.|++. |++|+++++. ....+.+.+.|.... ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~-~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRR-ESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 4799999999999999999999 9988766554 555677777776421 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCH
Q 013877 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg 271 (434)
.++++++.++++++.+|++++++....++...-. ...+|..||.. |+. ...++.|......|.++++++..+.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HPm~-G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHPMA-GTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCCcC-CCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999998875444321011 12589999943 221 112333333344578888988888889
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHH
Q 013877 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (434)
Q Consensus 272 ~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~ 320 (434)
++.+.+..++..+|.. ++..+..++ +....+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~~~~~h------D~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTADPEEH------DRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEcCHHHH------HHHHHHHcchHHHHHHH
Confidence 9999999999999964 433433333 34466677777755533
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=159.06 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=147.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+||| +|+||.++|+.|++. |++|++..+..+...+.+.+.|+.. ..+..++++++|+||+|+|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999999 9988877776544446677777753 4577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
..++++++.++++++++|+++.++. ...+.+ .+|.++.+|..||.. |+.. .. ..|-.+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~--------~~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PS--------LKGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-cc--------cCCCEEEEecCC
Confidence 9999999999999999998887643 334433 456678999999842 3221 11 234566677777
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~ 339 (434)
+.+.++.+.+.+++..+|.. ++.++..++++. + +..++..+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~~-v~~~~~e~HD~~--~---a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGAR-VIVTSPEEHDRI--M---SVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCCE-EEECCHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 77888999999999999964 444544444322 1 233455555666777778888999988876554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=149.27 Aligned_cols=195 Identities=17% Similarity=0.143 Sum_probs=131.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
+||+|||+|+||.++|++|++. |+ +|++.++ +....+.+.+.|+... ..+..++. ++|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~-~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDH-NELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcC-CHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999998 75 5554444 4555667777887521 34666765 499999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCC------ChhhHHHHHhhcccccCCCceEEE
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
.+.+++.++.+ ++++++|+++........+. +.-.....+|..||+. |......+| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~--~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES--VPKHIRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH--HHHhcCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 99999888865544222211 0000125799999974 333322333 3567767
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+...+.+.++.+.+..++..+|. +++.++..+++ +.. ..++..+.+.-++.+.+. .+.+++....
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD------~~~a~vs~lph~~a~~l~~~~~-~~~~~~~~~~ 204 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHD------LHAAYISHLPHIISFALANTVL-KEEDERNIFD 204 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHH------HHHHHHhHHHHHHHHHHHHHHH-hcCChHHHHh
Confidence 77777788899999999999996 45555444443 223 345555555555666654 4665555433
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=168.46 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=159.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
+||+|||+|+||.++++.|++. |+ +|++.+++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 84 66665554 44466677778751 12456788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChh--hHHHHHhhcccccCCCceEEEe
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGP--SVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~--~vr~ly~~G~~~~G~Gv~alia 264 (434)
...++++++.++++++.+|+++++.+ +..+++ .++. .+++++|++|.. .. ..+.........|-++.++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~-~g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEK-SGVHAANADLFRNHKVILT 148 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCc-chhhhhhhHHhCCCeEEEE
Confidence 98999999999999999999999876 444433 2322 134555666632 21 0111000111234566678
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
+....+.++.+.+..++..+|.. ++.. .+. .++..++++|++|+ +.-++.+.+.+.|.. ..+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~-~~~~---~~~---~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~~a~~~f~ 220 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGAD-VLHM---DVA---HHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFRYAAGGFR 220 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-EEEc---CHH---HHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHhhhccchh
Confidence 88888889999999999999964 2222 122 45577889999998 677777888777764 468888888888
Q ss_pred HHHHHHHHHhcHHHHHHhcCCc
Q 013877 344 GIISKIISTQGMLAVYNSFSGE 365 (434)
Q Consensus 344 Gli~~li~e~G~~~m~~~vssp 365 (434)
+ ++++. .+.-...+|.+++|
T Consensus 221 ~-~tRia-~~~p~~~~di~~~n 240 (735)
T PRK14806 221 D-FTRIA-ASDPVMWHDIFLAN 240 (735)
T ss_pred c-ccccc-cCCHHHHHHHHHHh
Confidence 6 66666 33445555665544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=148.23 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=135.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++|+|||+|+||.++|+.|++. |+ +|+++++. ....+.+.+.|+.. ....+.+++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 75 66655554 44567777777641 12356778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
...++++++.++++++.+|+++.+.+...++...-..+.++.++..||...... ..+..|...+..|.++++++....
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~--~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEH--SGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcc--cchhhcCHHHHCCCeEEEeCCCCC
Confidence 999999999999999999988887764332221113456778999999542111 011112112224567778877777
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~ 321 (434)
+.++.+.+..++..+|.. ++..+.+ ..+..+.+++.+|.++-.++
T Consensus 156 ~~~~~~~~~~l~~~lG~~-~~~~~~~------~hD~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 156 DPAAVARLTAFWRALGAR-VEEMDPE------HHDLVLAITSHLPHLIAYTI 200 (307)
T ss_pred CHHHHHHHHHHHHHcCCE-EEEcCHH------HHhHHHHHHhhHHHHHHHHH
Confidence 888999999999999974 3333222 23466888899998765554
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=147.06 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=124.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
++|+|||+|+||+++|+.|++. |++|++.++.. ..+.+.+.|+.. ..+.++++ .++|+||+|+|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999988 88887666553 245666778763 45777776 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl~eI-~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..++++++ .++++++++|+++..++ +..+.. .++.+.++|++||+.+...-.. ...+.+.+++..
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~--------~~~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKG--------GWAGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCcc--------ccCCCeEEEecc
Confidence 99999998 68899999988776643 444443 4566789999999875543111 123455544432
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 267 ----qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
.+.+.++.+..+.++..+|+ +++..+.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 34567889999999999995 6788888888744
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=139.46 Aligned_cols=193 Identities=20% Similarity=0.202 Sum_probs=132.2
Q ss_pred HHHHHHhhhhhhcCC--cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCC
Q 013877 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (434)
Q Consensus 126 ~A~nLrds~~~~~~G--~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk 203 (434)
+|+.|+++ | ++| ++.+.+....+.|++.|+... ..+..++++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~v-~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVEV-YGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSEE-EEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeEE-EEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57889988 7 454 577777778899989999742 22336789999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 013877 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (434)
Q Consensus 204 ~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~a 283 (434)
+|++|+++.++.....+...-.+|.+++||.+|| +.|+. +..|.........|.++++++..+.+.++++.+++++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999864322211124567899999999 44553 234444445566789999999988888999999999999
Q ss_pred hCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 284 iG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+|+ +++..+.++|++.- +.+++..+.+.-++...+.+.+.+......
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~~~~~ 195 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDPDILR 195 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChHHHHh
Confidence 997 67778888887542 334555555666666656544444443333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=139.20 Aligned_cols=251 Identities=13% Similarity=0.126 Sum_probs=156.2
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCCch----hHHHHHHcCccccCC
Q 013877 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (434)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrds~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~ 167 (434)
+||.|-|.||| |.++|.+|.+. |++|++++++..+ ..+.+.+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777777776 88999999999 9999888775431 344566678764
Q ss_pred CcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccchhh----hhhcccccCCCCccEEEeccCCChh
Q 013877 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG----HLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~i~----~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
..+..++++++|+||+++|+.. ..+++.++.+++++|++|++++..... .+.+ .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5678899999999999999988 578999999999999988877665432 1222 222222334454544444
Q ss_pred hHHHHHhhcccccCCCceEEE----eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH---
Q 013877 243 SVRRLYVQGKEINGAGINSSF----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--- 315 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~ali----av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--- 315 (434)
.. |.+ +.|...+. +.....+.++.+.+..++.++|.. ++... + +.......+...+.+
T Consensus 148 v~------Gae--~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~~ 212 (342)
T PRK12557 148 VP------GTP--QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVAL 212 (342)
T ss_pred cc------ccc--cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHHH
Confidence 31 100 01222211 123344778999999999999963 22221 1 122221122222222
Q ss_pred -HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCc------chhhhhhhhhccchh-HHHHHH
Q 013877 316 -IVESLFRRFTENGMNEDL-AYKNTVECITGIISKIISTQGMLAVYNSFSGE------DKKEFEKAYSASYYP-CMEILY 386 (434)
Q Consensus 316 -liea~~~~~v~~Gl~~e~-A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp------~~~eyg~~~~~~~~p-~~~~m~ 386 (434)
.+--.+..+.+.|..|.. +.+.+.|++.| +++|+.++|++.|.+.+... +...|+..- ..-| ..++++
T Consensus 213 a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 289 (342)
T PRK12557 213 SGVLDYYSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNPELLLRSASSMHLLEKQ--KDLDAALEILE 289 (342)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhh--hhHHHHHHHHH
Confidence 222244555666666554 55589999998 99999999999998877521 111233310 1122 457888
Q ss_pred HHHHhcc
Q 013877 387 ECYEDVA 393 (434)
Q Consensus 387 e~~~~v~ 393 (434)
++++++.
T Consensus 290 ~~~~~~~ 296 (342)
T PRK12557 290 NLDEDLL 296 (342)
T ss_pred HHHHHHh
Confidence 8888863
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=141.11 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=114.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||+ |+||+++|+.|++. .+++|+ +.+.. +.+ ..+.++++++||+||+|+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~--------d~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA--------DPG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC--------ccc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 167765 55431 111 3467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 191 ~~~vl~eI~~~---Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
..++++++.++ +++|++|+++.+++-.-++. ..+.+.+||..|| +.|+....+ .+|.++++++..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcc--------cCCCeEEEeCCC
Confidence 99999999875 89999999999987433322 1233567999999 444432112 357888887653
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
..+..+.++.|+..+|+ +++.++.++|++.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 33557889999999996 6778888888744
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=136.23 Aligned_cols=215 Identities=12% Similarity=0.141 Sum_probs=140.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----cCccccC----------CCcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~~~~~~~Ea 175 (434)
+++|+|||+|+||.++|..|..+ |++|++.++.. +..+.+.+ .|..... ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999998 99887766543 33333332 1211000 013467788
Q ss_pred hccCCEEEEeecchH--HHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcc
Q 013877 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (434)
Q Consensus 176 ~~~ADiViLavpd~a--~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (434)
+++||+||+++|+.. ..+++.++.+.++++++| +.++|..+..+.+ .++...+|+++||+.|....
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~~-------- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADVI-------- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCccC--------
Confidence 999999999999876 457888898888888776 5778888766655 34445579999999998651
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHH
Q 013877 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (434)
Q Consensus 253 ~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e 332 (434)
. ... +......+.+..+.+..++..+|...++ .+.+..-| ++...+.+++.-++..+.+.|++++
T Consensus 146 ----~-l~~-i~~g~~t~~~~~~~v~~l~~~~G~~~v~-----~~~d~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 146 ----P-LVE-VVRGDKTSPQTVATTMALLRSIGKRPVL-----VKKDIPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ----c-eEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEE-----EcCCCCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 2 223 4456677889999999999999974211 11111111 1222233444445555667778998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHHH
Q 013877 333 LAYKNTVECI------TGIISKIISTQGMLAVY 359 (434)
Q Consensus 333 ~A~~~~~e~l------~Gli~~li~e~G~~~m~ 359 (434)
+.....-+.. .| .-+++-..|+..++
T Consensus 211 ~id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~ 242 (311)
T PRK06130 211 DIDEVVKWSLGIRLALTG-PLEQRDMNGLDVHL 242 (311)
T ss_pred HHHHHHHhcCCCCccCCC-HHHHhhhhccchHH
Confidence 8877543321 24 34555566664433
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=144.02 Aligned_cols=193 Identities=21% Similarity=0.208 Sum_probs=126.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.+||+||.+. |+.|.+++|..++..+.+++.|... ..++.|+++++|+||+++||..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999999888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 192 ~-~vl~---eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
. +|+. .+.+.+++|+++++++-+....-.+. ...-..+..++ =+|-.-+.. ..+ .|.-. |-+.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~-------~GtLt-imvG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA-------AGTLT-IMVG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh-------hCceE-EEeC
Confidence 6 6774 59999999999999876643211000 00001233443 234221111 112 23444 3334
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-----hhhch-HHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-----ILLGA-VHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-----vL~G~-~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
. +.++.+.++-++..+|.. ++.. =+. =.|..+ +++++ ..++.| .+..+.++|++++..+.
T Consensus 139 G--~~~~f~r~~pvl~~~g~~-i~~~---G~~---G~G~~~Kl~nn~l~~~~~~a~aE-Al~la~k~Gld~~~~~~ 204 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN-IVHV---GPV---GAGQAAKLANNILLAGNIAALAE-ALALAEKAGLDPDVVLE 204 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc-eEEE---CCC---CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH
Confidence 4 578999999999999963 1100 000 011111 12222 222333 33456799999997776
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=151.50 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=130.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLa 185 (434)
.+++ +||||||+|+||.++|++|++. |++|+++++.. . .+.+.+.|+.. ..+.+++++ .+|+||+|
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 3466 8999999999999999999998 88887766653 2 25566778753 467788775 58999999
Q ss_pred ecchHHHHHHHHHHh-cCCCCcEEEEeccc---hhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGF---LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 186 vpd~a~~~vl~eI~~-~Lk~g~iL~~s~G~---~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
+|+....++++++.+ .+++|++|+++... .+..+.. .+|.++++|+.||+.....-+..|.. ......|+.
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~- 507 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVR- 507 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcE-
Confidence 999999999998876 68999999988655 3444443 55678899999997765431111111 111111211
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCC
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~ 330 (434)
+ .......+..+..+.++..+|+ ++++++.+++++. .+.+-.+|. .+...+++.|++
T Consensus 508 -v-~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~------~A~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 508 -I-GSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH------AAGSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred -e-CCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH------HHHHHHHHH---HHHHHHHHCCCc
Confidence 1 1112223556666799999995 6788888888732 222223333 334677777875
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-13 Score=132.79 Aligned_cols=225 Identities=14% Similarity=0.147 Sum_probs=160.6
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhHHHHHHcCccccCC
Q 013877 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (434)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~ 167 (434)
+||.|-|.||| |.+||++|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 46777777776 88999999999 999998887533 2345677788875
Q ss_pred CcCCHHhhhccCCEEEEeecchHHH-HHHHHHHhcCCCCcEEEEeccchh---hh-hhccccc-CCCCccEEEeccC-CC
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GH-LQSMGLD-FPKNIGVIAVCPK-GM 240 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i---~~-~~~~~i~-~~~di~VI~v~Pn-~p 240 (434)
+.+..|+++++|+||+++|+..+. +++..+.+++++|++|++++-... .+ ++. .+. -++|+.|...||- -|
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP 149 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVP 149 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCC
Confidence 668999999999999999998875 788889999999999998876542 22 222 122 2589999999993 34
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----H
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----I 316 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----l 316 (434)
++.-.+.|.-+ |... + -..-++.++.+...+|++.+|.. ++. ...|+.+..+-.|-.+.+ -
T Consensus 150 ~~~~~~~~~~~------~~~~-~-~~~~A~ee~i~~~~el~~~~~~~-~~~------~pa~l~~~v~Dm~s~vta~~~~g 214 (341)
T TIGR01724 150 GTPQHGHYVIG------GKPT-A-GKEMATEEQISKCVELAKSTGKK-AYV------VPADVTSAVADMGSLVTAVALAG 214 (341)
T ss_pred CCCCCceeeec------cccc-c-ccccCCHHHHHHHHHHHHHhCCC-eee------cchhhcchhhhHHHHHHHHHHHH
Confidence 44433334433 2221 1 24457889999999999999975 111 122355555444444444 2
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 317 VESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 317 iea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+-.-++.++ -.|-|.+++-+.+.+++.. ++.++.++|+..|.+.+.
T Consensus 215 il~y~~~~t~i~~ap~~~~~~~~~~~l~~-~a~l~~~~Gi~~~~~~l~ 261 (341)
T TIGR01724 215 VLDYYYVGTQIINAPKEMIEKQILMTLQT-MASLVETSGVEGMAKAIN 261 (341)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcC
Confidence 333455554 4599999999999999985 999999999999988775
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-13 Score=137.46 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=125.4
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 110 g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
.+++|+||| +|.||+++|+.|++. |++|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 348999999 999999999999999 99987776531 12456788899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
....++++++.+ +++|++|+++..++. ..+.. ..+. .||..||...... .+ ..|-..++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~~--~fvg~HPm~G~~~------~~----~~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHSG--PVLGLHPMFGPDV------GS----LAKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCCC--CEEeeCCCCCCCC------cc----cCCCEEEE--
Confidence 999999999999 999999999987642 23322 2222 6999999544322 11 12333323
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
....+.++.+.+..++..+|+ +++..+..+|+..- +.+++..+.+.-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vshLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 334455788999999999996 57777777776432 234444333445555666667888776544
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-13 Score=131.04 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=115.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH----------HHHHHcCcccc--------C-CCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~----------~~A~~~G~~~~--------~-~~~~~ 171 (434)
|+||+|||+|.||.++|..|..+ |++|++.+++.++.. +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 47899999999999999999999 998877665433221 13333442100 0 00234
Q ss_pred HHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
.+ .+++||+||+++|++.. .++++++.++++++++| +.++|+.+..+.+ .++..-+++++||+.|.+..
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---- 148 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---- 148 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC----
Confidence 44 57999999999998766 58999999999999988 6888988876655 33334579999999998883
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++. ++.+...+.+..+.+..++..+|..
T Consensus 149 --------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 --------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred --------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4564 5668888999999999999999975
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-13 Score=112.04 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=73.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEE-ecCCchhHHHHHHcCccccCCCcC-CHHhhhccCCEEEEeec
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~-~~~Ea~~~ADiViLavp 187 (434)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.+... .. +..|+++++|+||+++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788866 666666667777877653 34 79999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-Eecc
Q 013877 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~-~s~G 213 (434)
|+...++++++ +.+.++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777788664 5554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=135.73 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=131.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH------------------HcC-ccccCCCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~------------------~~G-~~~~~~~~~~ 171 (434)
++||+|||+|+||.++|.+|..+ |++|+++++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999888876443221110 012 222 457
Q ss_pred HHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
+++++++||+|+.++|+... ..++.++.+.++++.+| +-++|+.+..+.+ .+...-.++..||+.|.+..
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~~---- 146 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYLL---- 146 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcccC----
Confidence 88999999999999998874 35778888888888765 4567877766654 33334478999999987651
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHc
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTEN 327 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~ 327 (434)
. .. .++.....+.+..+.+..++..+|...+. .+...+ ..+++.+.. ++.-++..+.+.
T Consensus 147 --------~-Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~-----~~k~~~-----gfi~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 147 --------P-LV-ELVGGGKTSPETIRRAKEILREIGMKPVH-----IAKEID-----AFVGDRLLEALWREALWLVKDG 206 (495)
T ss_pred --------c-eE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEe-----ecCCCc-----chhHHHHHHHHHHHHHHHHHcC
Confidence 1 22 35556667889999999999999975211 111111 223333333 334455556678
Q ss_pred CCCHHHHHHHHH
Q 013877 328 GMNEDLAYKNTV 339 (434)
Q Consensus 328 Gl~~e~A~~~~~ 339 (434)
|+++++.....-
T Consensus 207 ~~s~~~id~~~~ 218 (495)
T PRK07531 207 IATTEEIDDVIR 218 (495)
T ss_pred CCCHHHHHHHHh
Confidence 899998877443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-13 Score=121.62 Aligned_cols=149 Identities=22% Similarity=0.223 Sum_probs=100.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||||||+|+||.+||+||.++ |++|.+++|..+ ..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPE-KAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHH-HHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchh-hhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 999988877644 456666678876 7899999999999999999866
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 191 ~-~~vl~e--I~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
+ .+++.+ +.+.+++|+++++.+-.... .+.+ ..-+.++.+|- +|-.-++. .-+.| -.+.++
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~~g------~l~~~~- 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAEEG------TLTIMV- 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHHHT------TEEEEE-
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccccc------ceEEEc-
Confidence 5 589988 99999999999988766532 2222 11134666663 33221221 12222 124433
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 013877 265 VHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~ 286 (434)
.. +.++.+.++.++..+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 32 45788999999999985
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=141.02 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=118.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
++|+|||+|+||+++|++|++. |++|+++.+.. ..+.+.+.|+.. ..+.++++ +++|+|++|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 98887666652 235677788764 55777755 56999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee-
Q 013877 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (434)
Q Consensus 191 ~~~vl~eI~-~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav- 265 (434)
..++++++. +++++|++|+++..+... .+.. .+|.+.+||..||.. |+.. ...| -.|.+.++..
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999998876532 2222 456788999999955 4431 1112 1334444431
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 266 ---~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
......+..+..+.++..+|+ ++++++.+++++.
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~ 226 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKY 226 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH
Confidence 112222456677899999996 6777877777643
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-12 Score=119.54 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=109.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-------cCccccCCCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+||+||| .|+||.+++..|.++ |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 999999999999999 99998887765443333321 13210 001246678899999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccchh-----------------hhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i-----------------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
+++|++.+.++++++.+.++. ++| ..+.|+.. ..+++ .+|.+.+||+++||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999988887764 655 46677764 22333 455546899999999988754
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~ai-G~~ 287 (434)
. . ..+.+...+++ .. +.++++.+.+|...+ |..
T Consensus 150 ~-~-----~~~~~~~~~v~-Gd--d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 D-V-----DDEVDCDVLVC-GD--DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred C-C-----CCCCCCCEEEE-CC--CHHHHHHHHHHHHhcCCCC
Confidence 3 1 11234555444 22 356999999999999 864
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-12 Score=124.79 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=111.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCcccc-------C-CCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N-GTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------~-~~~~~ 171 (434)
++||+|||+|.||.++|++|..+ |++|++.+++.++ .+. ..+.|.... + -...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999999 9998877665332 221 222231100 0 01233
Q ss_pred HHhhhccCCEEEEeec--chHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavp--d~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
..+++++||+||.|+| ++....++.++.+.++++++| +.++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 444457888999999999887 4889998876655 33334689999998887651
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
. .. .++.+...+.+..+.+..++..+|..
T Consensus 150 --------~-lv-eiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 --------K-LV-EIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred --------c-eE-EEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1 22 35567778889999999999999975
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-12 Score=123.99 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=101.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc----------CCCcCCHHhhhccCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSD 180 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~~~~~~~Ea~~~AD 180 (434)
|+||+|||+|+||.++|.+|.++ |++|.+++|... ..+...+.|.... .....+.+++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPE-QAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD 73 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence 57999999999999999999999 999887777533 3343444321100 001356778889999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEE-eccchhh-------hhhcccccCCC-CccEEEeccCCChhhHHHHHhhc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~-s~G~~i~-------~~~~~~i~~~~-di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
+||+++|+....++++++.+.++++++|+. +.|+... .+.+ ..+. ....++..|+.+....
T Consensus 74 ~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~~------- 143 (325)
T PRK00094 74 LILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEVA------- 143 (325)
T ss_pred EEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHHH-------
Confidence 999999998888999999999999987664 4487542 2222 2222 1245666786654431
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
.|.+.++.... .+.+..+.+..++...|.
T Consensus 144 -----~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 144 -----RGLPTAVVIAS-TDEELAERVQELFHSPYF 172 (325)
T ss_pred -----cCCCcEEEEEe-CCHHHHHHHHHHhCCCCE
Confidence 23333222222 246778888888888775
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=137.19 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhccchhHHH----HHHHHHHhcc
Q 013877 318 ESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME----ILYECYEDVA 393 (434)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~~----~m~e~~~~v~ 393 (434)
+++||.+|++|++|++||+++++++. +|+++|+++||.+|||++|+|+ +||.|.. ...+|+ +++++|++|+
T Consensus 233 ~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~ta--k~ga~~~--~~~~k~~m~p~f~~~~~~I~ 307 (487)
T PRK05225 233 LLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSNPA--KIRAFEL--SEQLKEIMAPLFQKHMDDII 307 (487)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccchh--hcccccc--cHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999998 6999999999999999999655 5998632 233444 4499999999
Q ss_pred CChhHHHHHHhcCccc
Q 013877 394 AGSEIRSVVLAGRRFY 409 (434)
Q Consensus 394 ~G~f~r~~~~~~~~~~ 409 (434)
||+|+|+|+.++...+
T Consensus 308 sG~fak~~m~d~~~~~ 323 (487)
T PRK05225 308 SGEFSSTMMADWANDD 323 (487)
T ss_pred ccHHHHHHHHHHhcCC
Confidence 9999999999887743
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-11 Score=120.35 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc---CCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~---ADiViLavpd 188 (434)
++|||||+|+||.++|++|.+. |++|++++|+.+ ..+.+.+.|... ..+.++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999999 999888777644 345556677664 5688888876 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. ...++++++.+.+++|++|++.+.... ..+.+ . .-..++.++ =+|-.-+.. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---HHh-------cCC-e-EE
Confidence 8 667889899999999999998866532 12211 1 112456654 345332221 111 355 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC--cccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSP--FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKNTV 339 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~--~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~G--l~~e~A~~~~~ 339 (434)
+.. +.++.+.+..++..+|.. .++..- .-.-....+. -+.++.+...++.| ++..+.+.| ++++..+..--
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aE-a~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAE-GLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcccCCCHHHHHHHHc
Confidence 444 467889999999999962 111110 0000000000 01112222223333 345667888 99998877433
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=120.75 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=124.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.+||++|.++ |++|.++++.. + .+...+.|... +.+..|+++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99988877653 2 34455667764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 192 -~~vl~---eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.++- +|-.-+.. ..+.| -..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GAREG-------TLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhcC-------cEEEEE
Confidence 46763 367778999999998877543 1211 11234677776 68444333 23333 333232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
.. +.+..+.+..++..+|... +..- .-.-....+. -+.++.....++.|+ +..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~-~~~G~~G~g~~~Kl~-~N~l~~~~~~a~~Ea-~~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNI-TLVGGNGDGQTCKVA-NQIIVALNIEAVSEA-LLFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCc-EEeCCccHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 33 4678999999999999641 1110 0000011111 111122223335554 3456889999998885
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-11 Score=118.04 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=103.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh---hccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea---~~~ADiViLavpd 188 (434)
+||||||+|+||.++|++|.++ |++|.+++|+.+ ..+...+.|... ..+.+++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 4899999999999999999999 999988776644 455556667653 3455554 4568999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
....++++++.+.+++|++|++.+... .....+ ..-..+++++-....+..... + .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a----~-------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGR----E-------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHH----h-------cCC-e-eee
Confidence 977899999999999999988775542 111111 122356777765443322221 1 354 3 334
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 013877 266 HQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~ 286 (434)
.. +.++.+.+..++..+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 57889999999999986
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=120.46 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=124.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||+|||+|+||.++|.+|.+. |++|.+++++.++ .+...+.|... +.+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~~-~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQA-VDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 46899999999999999999999 9998887776443 55555667653 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~-~~vl~---eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ .+++. .+.+.+++|+++++.+-+... .+.+ .....++.++ =+|-.-+.. .-+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 4 56664 477889999998877655432 2211 0112456665 355433322 112 2344433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~ 339 (434)
+.. +.+..+.+..++..+|.. ++... .-.-....+. .-.+++....++--.+..+.+.|++++..+...-
T Consensus 137 -~gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 137 -AGG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 233 567899999999999964 21110 0000001110 0112233333333345667899999998776433
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=113.72 Aligned_cols=216 Identities=17% Similarity=0.194 Sum_probs=134.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc------------CccccC---------CCc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~~~ 169 (434)
++||+|||.|.||.++|..|..+ |++|++.++..+ ..+.+.+. .....+ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999998 999887776533 23333211 111000 014
Q ss_pred CCHHhhhccCCEEEEeecch--HHHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHH
Q 013877 170 GDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~--a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (434)
.+.++++++||+||.|+|.. ...++++++.+.++++++|+ .++++.+..+.+ ..+..-+++..||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 57888999999999999966 34578999999999998874 555665544443 2223347999999777543
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHH
Q 013877 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFT 325 (434)
Q Consensus 247 ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v 325 (434)
.-..-+.++...+.+.++.+.+++..+|...++-. .+ ..+-+.+-+.. ++..++ .++
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-------~pgfi~nRi~~~~~~ea~-~l~ 207 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-------QPGYILNSLLVPFLSAAL-ALW 207 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-------CCCHhHHHHHHHHHHHHH-HHH
Confidence 12233556777888999999999999996421110 01 11222232332 332222 357
Q ss_pred HcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhc
Q 013877 326 ENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSF 362 (434)
Q Consensus 326 ~~Gl-~~e~A~~~---~~e~l~Gli~~li~e~G~~~m~~~v 362 (434)
+.|+ ++++--.. ....-.| .-+++-..|++.+++..
T Consensus 208 ~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~ 247 (287)
T PRK08293 208 AKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNIT 247 (287)
T ss_pred HcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHH
Confidence 7785 56554332 2221235 34567777776555444
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=115.47 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=121.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHH
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~ 192 (434)
||||||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 99998777654 4456666677654 567889999999999999987654
Q ss_pred -HHH---HHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 193 -~vl---~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
.++ +.+.+.+++|++|++.+..... .+.+ .....++.++- +|-. +... ... .|...++ +
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~-~ 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIM-V 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEE-e
Confidence 455 3477888999999887665432 2221 01124667775 5732 2211 111 2343423 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHH-H---HHHHHHHHHHcCCCHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-I---VESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~a-l---iea~~~~~v~~Gl~~e~A~~~~ 338 (434)
.. +.+..+.+..++..+|.. ++.. -.... ++..-+ .+.+.+ . +--++..+.+.|+++++.+...
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~---g~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l 204 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLV---GGNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQAL 204 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEe---CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 468889999999999964 2111 00000 111112 222222 2 2234556679999999888633
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-11 Score=116.31 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=111.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--------------cCccccC---------C
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--------------~G~~~~~---------~ 167 (434)
++||+|||+|.||.++|..|.++ |++|++.+++.+ ..+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEE-ILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 999887766533 3332211 1211000 0
Q ss_pred CcCCHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhH
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
...+. +++++||+||+++|++.. .++++++.+.++++++|+ .++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 678999999999998874 578889999999998764 667887766654 33344579999999998873
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 245 r~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++.. + .+...+.+..+.+..++..+|..
T Consensus 152 ------------~~vEv-~-~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIEV-V-RAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEEE-e-CCCCCCHHHHHHHHHHHHHcCCe
Confidence 24442 3 67788899999999999999964
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-10 Score=112.67 Aligned_cols=153 Identities=15% Similarity=0.080 Sum_probs=108.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (434)
++||+|||+|.||.++|.+|.++ |++|+++++..+ ..+.+.+ .|..... ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47999999999999999999999 999987776533 3333221 1110000 0135
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+.++++++||+||.|+|+.... .++.++.+.++++++| +.++.+.+..+.+ .......++.+|+-.|.+.
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 6778999999999999988754 6778898999999877 5677777665544 2222345788888755433
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+--..++.+...+.+..+.+..++..+|..
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 123335556677889999999999999964
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=124.47 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=105.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhcc---CCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~---ADiViL 184 (434)
+.+|||||+|+||.+||+||.++ |++|.|++|..++..+.... .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999876654443321 14320 0014678888876 999999
Q ss_pred eecchHHH-HHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
++|+.... +|++.+.+.|++|++|++..-.... ...+ ..-.+++.++ -+|-.-+..- =+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fl-dapVSGG~~g---A~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYL-GMGVSGGEEG---AR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-eCCCcCCHHH---hc-------CCC-
Confidence 99988775 6888899999999999988654321 1111 1123567766 5663323221 11 454
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +-+.. +.++.+.++-++..+|..
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 567999999999999963
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=120.92 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=94.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--------CccccC--CCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~~~~~~~Ea~~~ADi 181 (434)
+||+|||+|+||.++|.+|.++ |++|.++.|...+ .+...+. |..... ....+.+|+++.+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999999 9999888875333 2333332 311000 014578888999999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEE-EEeccch-----hhhhhcccc--cCCCCccEEEeccCCChhhHHHHHhhccc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~-----i~~~~~~~i--~~~~di~VI~v~Pn~pg~~vr~ly~~G~~ 253 (434)
||+++|+....+++ +.++++.+| ..+.|+. ...+.+ .+ ....++ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 99999999776666 445677655 4667764 222221 00 011222 456788776554
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 254 ~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.|.+.+.... ..+.+..+.+..++...|..
T Consensus 142 --~~~~~~~~~~~-~~~~~~~~~v~~ll~~~~~~ 172 (328)
T PRK14618 142 --ARFLPAATVVA-SPEPGLARRVQAAFSGPSFR 172 (328)
T ss_pred --HcCCCeEEEEE-eCCHHHHHHHHHHhCCCcEE
Confidence 23444322222 23567788888888888753
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-11 Score=119.19 Aligned_cols=196 Identities=16% Similarity=0.113 Sum_probs=123.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc---CCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~---ADiViLavpd 188 (434)
+||||||+|+||.++|++|.+. |++|.++++..+ ..+.+.+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999999 999988777644 345556678764 5678888875 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. ...++++.+.+.+++|+++++.+.... ..+.+ ..-..++.++- +|..-+..- =+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-eEE-
Confidence 8 556888889999999998887654332 11211 11235677775 775444321 11 354 323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC---cccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHH--cCCCHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSP---FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTE--NGMNEDLAYKN 337 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~---~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~--~Gl~~e~A~~~ 337 (434)
+.. +.+..+.+..++..+|.. .++..- .-.-....+. .+.++.+.+.++.| ++..+.+ .|++++..+..
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~-~n~l~~~~~~~~aE-a~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMV-HNGIEYGMMQAYAE-GFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHH
Confidence 343 567889999999999962 111110 0000000011 12222333333333 4455666 89999987763
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=113.91 Aligned_cols=193 Identities=18% Similarity=0.126 Sum_probs=121.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH-HHH
Q 013877 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (434)
Q Consensus 116 IIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~-~~v 194 (434)
|||+|+||.++|++|.++ |++|++++|+.+ ..+...+.|... ..+..++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999988877644 455666677754 56888999999999999998554 678
Q ss_pred H---HHHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 195 l---~eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
+ +++.+.+++|++|++.+++.....+.. ......+++++- +|-.-+.. ..+.| -..+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd-aPv~Gg~~---~a~~g-------~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD-APVSGGVG---GARAG-------TLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-CCCCCCHH---HHhhC-------cEEEEE-CC--C
Confidence 7 578889999999998888764322110 011124677765 36333222 33443 333232 33 3
Q ss_pred HHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 271 GRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
.+..+.+..++..+|... +..- ...-....+. .+..+.+...++.| ++..+.+.|++++..+.
T Consensus 136 ~~~~~~~~~~l~~~g~~~-~~~g~~g~g~~~Kl~-~n~~~~~~~~~~~E-a~~la~~~Gld~~~~~~ 199 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNI-VHCGDHGAGQAAKIC-NNMLLGISMIGTAE-AMALGEKLGLDPKVLFE 199 (288)
T ss_pred HHHHHHHHHHHHHhcCCe-EeeCCCCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH
Confidence 477888999999999641 1110 0000001011 11111111222333 34567899999998775
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=113.07 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=136.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC---------ccccC--CCcCCHHhhhccC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~~~~~~~Ea~~~A 179 (434)
++||+|||.|+||.++|..|.++ | +++++.+. +...+...+.+ +.... ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37999999999999999999998 8 45555554 33333333332 11000 0134677889999
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCc-EEEEeccchh-------hhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
|+||+++|.....+++++|.+++++++ +|++..|+.. +.+.+ .+|....++...|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998886 5578889864 24433 3343334567888776655
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH---HHHHHHHHHHHcC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENG 328 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a---liea~~~~~v~~G 328 (434)
+.|.++.+.+..+ +.+ .+..+...+... .|.-....|+.+.+ ++|.+-- +.-.+.+ +...|
T Consensus 148 ----~~g~~t~~via~~-~~~---~~~~v~~lf~~~-----~~~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g 211 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQH---LATRLSPLFRTR-----RFRVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIG 211 (341)
T ss_pred ----HcCCCeEEEEEeC-CHH---HHHHHHHHhCCC-----CEEEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCC
Confidence 2466653433332 333 344445555443 23345556676655 6666653 2222333 44555
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHH--------HHhcHHHHHHhcCCcc--hhhhhhhhh
Q 013877 329 MNEDLA-YKNTVECITGIISKII--------STQGMLAVYNSFSGED--KKEFEKAYS 375 (434)
Q Consensus 329 l~~e~A-~~~~~e~l~Gli~~li--------~e~G~~~m~~~vssp~--~~eyg~~~~ 375 (434)
-...-| ...+++|+.. +++.+ .-.|++.|.--|+++. ...||..+.
T Consensus 212 ~n~~aali~~~~~E~~~-~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~ 268 (341)
T PRK12439 212 ENTRAMVIARALREMTK-LGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLG 268 (341)
T ss_pred chHHHHHHHHHHHHHHH-HHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHH
Confidence 444322 3345566553 34333 1234567777777652 234666544
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=109.46 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=72.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||+|||.|+.|.++++.|.+. |++|.-.+.++..+.+++.. +.. +....+..|+++++|+|||+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~--~~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAA--FIG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCccccccccc--ccc-cccccccccccccCCEEEEEechHHH
Confidence 6999999999999999999999 99864433333334444433 221 22256778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEeccch-hhhhhcccccCCCCccEEEecc
Q 013877 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 192 ~~vl~eI~~~--Lk~g~iL~~s~G~~-i~~~~~~~i~~~~di~VI~v~P 237 (434)
.++.++|... .++|++|++++|-. ...++- .-..+.-+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999854 222211 0023556666776
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-10 Score=111.26 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=124.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (434)
|++|+|||.|.||.++|.+|.++ |++|+++++..+ ..+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999988777533 2232 2234532100 1245
Q ss_pred CHHhhhccCCEEEEeecchH--HHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a--~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+..++++++|+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||-.|....
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3467777877766665543 334444444544 33444579999997765441
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH-HHHHHHHHHHHH
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTE 326 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~-aliea~~~~~v~ 326 (434)
... .++.+...+.+.++.+..++..+|... +.. ..... +.+++-+. +++.-++..+.+
T Consensus 149 ----------~lv-eiv~~~~t~~~~~~~~~~~~~~lG~~~-v~v---~~~~~------G~i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PVV-EVVPAPWTAPATLARAEALYRAAGQSP-VRL---RREID------GFVLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEE-EEe---cCCCc------cHHHHHHHHHHHHHHHHHHHc
Confidence 122 245566677899999999999999642 111 01111 11223222 344445556667
Q ss_pred cCCCHHHHHHHH
Q 013877 327 NGMNEDLAYKNT 338 (434)
Q Consensus 327 ~Gl~~e~A~~~~ 338 (434)
.|+++++.....
T Consensus 208 g~~~~~~id~~~ 219 (308)
T PRK06129 208 GVASVDDIDAVI 219 (308)
T ss_pred CCCCHHHHHHHH
Confidence 789999877643
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=112.31 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=119.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+++|+|||+|.||.++|++|.+. |++|++++++. ...+.+.+.|... +.+.+|+++++|+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNP-EAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 99987766653 3455556667653 4678899999999999999777
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~~-~vl---~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+. .++ +++.+.+++|++|++++.+... .+.+ . ....++.++ -+|-.-+... -. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~-d~pv~g~~~~---a~-------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEML-DAPVSGGEPK---AI-------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEE-EcCCCCCHHH---Hh-------hCcEEEE
Confidence 64 455 3578889999999887766542 2222 0 112345554 2352221110 01 2333323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
. .. +.+..+.+..++..+|.. ++... ...-... .+-....+.+. .+++--++..+.+.|+++++.+.
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~-Kl~~n~~~~~~-~~~~~Ea~~l~~~~Gi~~~~~~~ 205 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGS-VVHTGDIGAGNVT-KLANQVIVALN-IAAMSEALVLATKAGVNPDLVYQ 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-eEEeCCcCHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHH
Confidence 2 33 467889999999999964 11110 0000000 00011111111 12333356677889999997775
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=120.30 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=101.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--C--ccccCCCcCCHHhhh---ccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G--~~~~~~~~~~~~Ea~---~~ADiViLa 185 (434)
+|||||+|+||.+||+||.++ |++|++++|+.++..+...+. | +.. ..++++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999998888755543333321 2 332 45677766 468999999
Q ss_pred ecch-HHHHHHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 186 ISDA-AQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 186 vpd~-a~~~vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
+|+. +..++++++.++|++|++|++..-.. ...... .-.+++.++-+...+-.... + .|.
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsGG~~gA----~-------~G~- 135 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSGGEEGA----R-------KGP- 135 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCCCHHHH----h-------cCC-
Confidence 9994 55689999999999999999886432 111111 22457777755444422221 1 343
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +.+.. +.++.+.++-++..++..
T Consensus 136 ~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 3 33454 568999999999999864
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-10 Score=118.81 Aligned_cols=151 Identities=14% Similarity=0.084 Sum_probs=102.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhc---cCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~---~ADiViL 184 (434)
|.+|||||+|+||.++|+||.++ |++|.+++|+.++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999888875543333221 24321 11568888886 4899999
Q ss_pred eecchHH-HHHHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 185 avpd~a~-~~vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
++||... .++++++.|+|++|++|++..... .....+ ...+++.++ -+|-.-|.. .-+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHH---HHh-------cCC
Confidence 9877655 579999999999999998775432 111111 224567766 455222222 111 244
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +.+.. +.++.+.++-++..+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 568999999999999863
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-10 Score=111.38 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=108.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCcccc--------C-CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------~-~~~~ 170 (434)
++||+|||.|.||.++|.+|..+ |++|+++++..+ ..+.+.+ .|.... . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 38999999999999999999999 999988776533 2333221 232100 0 0123
Q ss_pred CHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+. +.+++||+||.++|...+ ..++++|.+.++++++|+ .++++.+..+.+ .....-.++.+|+--|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 457899999999997644 468888999999999875 778887766654 22223468888887666652
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++ - +.++...+.+..+.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233 3 4456677889999999999999964
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-10 Score=106.32 Aligned_cols=155 Identities=21% Similarity=0.175 Sum_probs=104.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|++|+|||.|+||.++|+++.+. |++|+++.++.+++.+.+. +.+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 9999999887665554443 334332 1468999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecc-----chh-------------hhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G-----~~i-------------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
.+.++++++...+. |++|+++.- +.. ..+++ .+|.. +||..-=+.+...+...=..
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~l~~~~~~- 145 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAVLADLAKP- 145 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHHhccCCCc-
Confidence 99999999998886 888876521 110 01111 22221 44433333444333222111
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.....++| . .+.++++.+.+|...+|..
T Consensus 146 ----~~~~~v~va-g--DD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 146 ----GGRRDVLVA-G--DDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred ----CCceeEEEe-c--CcHHHHHHHHHHHHhcCcc
Confidence 112334444 2 2578999999999999875
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=108.55 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=110.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC-----CCcCCHHh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~~~~~~~E 174 (434)
++||+|||.|.||.++|..+..+ |++|+++++.... .+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 9999887765332 2221 122321100 12457889
Q ss_pred hhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
++++||+|+-++|..... +++.+|.+.++++++|. -++++.+..+.+ .....-+++.+||=-|.+.++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 999999999999977764 68889999999998774 446776655544 222334799999988877631
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.-- +.++...+.+.++.+.+++..+|..
T Consensus 151 -------LVE-Vv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 -------LVE-VLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------eEE-EeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 222 3456778889999999999999964
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=114.90 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=135.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcC-------------cccc
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G-------------~~~~ 165 (434)
.+++|||||+|.||..||.++..+ |++|++.++..+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 358999999999999999999999 9999888776443 333 23445 232
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChh
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
..+.++ +.+||+||-++|+.... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.=-|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 346655 56999999999987775 4777888888899988 4778887765544 222223688888877777
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHH
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLF 321 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~ 321 (434)
.+ ...- +..+...+.+.++.+..++..+|..-+. . .+. .+.+.+-+.. ++..++
T Consensus 151 v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~pv~-v---~d~-------pGfi~Nrll~~~~~Ea~ 205 (507)
T PRK08268 151 LM-------------KLVE-VVSGLATDPAVADALYALARAWGKTPVR-A---KDT-------PGFIVNRAARPYYTEAL 205 (507)
T ss_pred cC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCceEE-e---cCC-------CChHHHHHHHHHHHHHH
Confidence 73 1333 4446677889999999999999975211 1 110 1122232222 333344
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH---HHHHHHHHHhcHHHHHH
Q 013877 322 RRFTENGMNEDLAYKNTVECIT---GIISKIISTQGMLAVYN 360 (434)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~e~l~---Gli~~li~e~G~~~m~~ 360 (434)
..+.+.|.++++.....-...- | .-.++-..|++..++
T Consensus 206 ~l~~~g~~~~~~iD~al~~~~G~~mG-Pf~l~D~~Gldv~~~ 246 (507)
T PRK08268 206 RVLEEGVADPATIDAILREAAGFRMG-PFELMDLIGLDVNHA 246 (507)
T ss_pred HHHHcCCCCHHHHHHHHHhcCCCCcC-HHHHHHHhchHHHHH
Confidence 4445556788766553222111 3 345556666654444
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=132.77 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=121.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|||||+|+||.+||+||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888876444 45555677765 67899999999999999998777
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchhhhhhcccccC-CCC--ccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 192 ~-~vl---~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~-~~d--i~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. +|+ +.+.+.+++|+++++.+-.......+..-.+ ..+ +.++ =+|-.-+.. .-++ |--.++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l-DaPVsGg~~---~A~~-------G~L~im- 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV-DAYVSKGMS---DLLN-------GKLMII- 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE-EccCcCCHH---HHhc-------CCeEEE-
Confidence 5 676 3588889999999988765432211100011 234 5555 345222222 1123 333322
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh---hhhchHH-----HHHHHHHHHHHHcCCCHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG---ILLGAVH-----GIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t---vL~G~~~-----aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+.. +.+..+.+..++..+|.....-. -+ .|... .+.+.+. ++.|+ +..+.+.|++++..+.
T Consensus 142 vGG--~~~~~~~~~p~l~~~g~~i~~~~---G~-----~G~g~~~KL~nN~l~~~~~~a~aEA-l~la~~~Gld~~~l~~ 210 (1378)
T PLN02858 142 ASG--RSDAITRAQPFLSAMCQKLYTFE---GE-----IGAGSKVKMVNELLEGIHLVASAEA-MALGVRAGIHPWIIYD 210 (1378)
T ss_pred EcC--CHHHHHHHHHHHHHhcCceEEec---CC-----CCHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 233 45678999999999996411000 00 11111 1112222 23333 3457899999998887
Q ss_pred HH
Q 013877 337 NT 338 (434)
Q Consensus 337 ~~ 338 (434)
..
T Consensus 211 vl 212 (1378)
T PLN02858 211 II 212 (1378)
T ss_pred HH
Confidence 43
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=105.40 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=152.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhh-hhhcCCcEEEEEecCCch----hHHHHHHc--------CccccCC--CcCCHHhhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR----SFAEARAA--------GFTEENG--TLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~-~~~~~G~~Vivg~r~~~~----s~~~A~~~--------G~~~~~~--~~~~~~Ea~ 176 (434)
+||+|||.|++|.|+|..|.++- +-..+|++|.++.|+..- ..+.-.+. |+...+. ...|..+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 68999999999999999999880 000012688887766421 11111111 1111000 145778999
Q ss_pred ccCCEEEEeecchHHHHHHHHHHh--cCCCCc-EEEEeccchhh---------hhhcccccCCCCccEEEeccCCChhhH
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~--~Lk~g~-iL~~s~G~~i~---------~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
++||+|++++|++...++++++.+ ++++++ +|+.+.|+... .+.+ .++..+ .+..-|+.+..+.
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~-~~LsGPs~A~Eva 167 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPC-CALSGANVANDVA 167 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCe-EEEECCCHHHHHH
Confidence 999999999999999999999998 888776 45688888532 1111 122222 2355666655553
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHH--HHHHH
Q 013877 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV--ESLFR 322 (434)
Q Consensus 245 r~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~ali--ea~~~ 322 (434)
.|.++.+.+... ..+.+..+...+... .|.-.+-.|+.|.+ +||.+--++ -+++-
T Consensus 168 ------------~~~pt~~vias~----~~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNviAIa~Gi~ 224 (365)
T PTZ00345 168 ------------REEFSEATIGCE----DKDDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNIIALAAGFC 224 (365)
T ss_pred ------------cCCCcEEEEEeC----CHHHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHHHHHHHHHH
Confidence 356664544432 344555566666665 44455667888887 788877532 22333
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHHHHHHHHH----------HhcHHHHHHhcCCcchhhhhhhhhccc--hhHHHHHHHHH
Q 013877 323 RFTENGMNEDLAYK-NTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YPCMEILYECY 389 (434)
Q Consensus 323 ~~v~~Gl~~e~A~~-~~~e~l~Gli~~li~----------e~G~~~m~~~vssp~~~eyg~~~~~~~--~p~~~~m~e~~ 389 (434)
-+...|..-.-|+. .++.|+.- +++.+. -.|++.|.--|++-....||..+.... .+..+++++++
T Consensus 225 dGl~~G~N~kaalitrgl~Em~~-l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~ 303 (365)
T PTZ00345 225 DGLGLGTNTKSAIIRIGLEEMKL-FGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELL 303 (365)
T ss_pred HhcCCChhHHHHHHHHHHHHHHH-HHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhh
Confidence 33345654444444 56666663 444442 245677777777633345777655332 35445554432
Q ss_pred H-hccCChhHHH
Q 013877 390 E-DVAAGSEIRS 400 (434)
Q Consensus 390 ~-~v~~G~f~r~ 400 (434)
. .+--|-.+-.
T Consensus 304 ~~~~vEG~~t~~ 315 (365)
T PTZ00345 304 NGQKLQGTVTLK 315 (365)
T ss_pred CCcEechHHHHH
Confidence 2 4445555443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-09 Score=110.01 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=117.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ccccCCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (434)
+||+|||+|.||.++|.+|.+. |++|+++++...+ .+...+ .| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 4799999999999999999999 9998776654333 222211 23 222 356
Q ss_pred HHhhhccCCEEEEeecchH----------HHHHHHHHHhcCCCCcEEEEeccchhh---hhhcccc-c---CCCCcc-EE
Q 013877 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGL-D---FPKNIG-VI 233 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a----------~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i-~---~~~di~-VI 233 (434)
..++++++|+||+|+|+.. ...+++.|.+++++|++|++.+++... .+....+ . .....+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 456777899999999998877754321 1110000 0 111223 25
Q ss_pred EeccCCC--hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCcccccchhhhcccccccchhhhh
Q 013877 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (434)
Q Consensus 234 ~v~Pn~p--g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG-~~~~iettf~~E~~~Dlfge~tvL~ 310 (434)
..+|... |..+.+.+ -.+.++ +. .+.+..+.+..++..++ ......++. ...+.-.+-+.+. .
T Consensus 150 ~~~Pe~~~~G~~~~~~~---------~~~~iv-~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~Kl~~N~~-~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLL---------NPDRIV-GG--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIKLAENTF-R 215 (411)
T ss_pred EECCCcCCCCChhhhhc---------CCCEEE-Ee--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHHHHHHHH-H
Confidence 6777432 22211111 122323 23 36789999999999997 332221211 1111111112111 1
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 311 GAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 311 G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+.--+++.-+...+.+.|+++++.+.
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22233566667778888998887765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-09 Score=123.48 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=122.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+++|||||+|+||.+||++|.+. |++|.++++...+ .+...+.|... ..++.++++++|+||+|+|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9999888776443 44455567653 5688899999999999999555
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhhh---hhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~-~~vl~---eI~~~Lk~g~iL~~s~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ .+++. .+.+.+++|+++++.+-..... +.+....-..++.++ =+|-..++.. -+ .|--.++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A~-------~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---AA-------MGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---hh-------cCCceEE
Confidence 5 57762 4788899999998877654322 211000001466655 4554433331 11 3433323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCccc-ccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~i-ettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~ 338 (434)
+ .. +.+..+.+..++..+|....+ --..-.-....+. .+ .++++..+.+--++..+.++|++++..+...
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-nN-~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-NQ-LLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 457899999999999964111 0000000000010 00 1222222222224456689999999887743
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-08 Score=100.27 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=66.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.++|++|.++ |++|.+++|... .++.++++++|+||+++|+..+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECChHHH
Confidence 7899999999999999999999 999988877531 2567888999999999999988
Q ss_pred HHHHHHHHhc-CCCCcEEEEec-cc
Q 013877 192 ADNYEKIFSC-MKPNSILGLSH-GF 214 (434)
Q Consensus 192 ~~vl~eI~~~-Lk~g~iL~~s~-G~ 214 (434)
.++++++.++ ++++++|+++. |+
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 8999888774 78888776543 44
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-10 Score=113.36 Aligned_cols=149 Identities=20% Similarity=0.186 Sum_probs=101.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|||||+|+||.+|+.||.++ |+.|+|++|.-++ .+..++.|..+ ..++.|+++++|+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999987544 56666778876 67899999999999999998888
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 192 ~-~vl~---eI~~~Lk~g~iL-~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ ++|. .+...+++|... ++++-+... .+.+ .+. ..+..+| =+| -+|-. ..-+ .|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~v-DAP-VSGg~--~~A~-------~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFV-DAP-VSGGV--KGAE-------EGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEE-ecc-ccCCc--hhhh-------cCeEEEE
Confidence 6 6775 366777788866 577654321 2211 111 2343444 234 11111 1111 3444434
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 013877 264 AVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ . -+....+.+..++..+|..
T Consensus 172 a-g--Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-G--GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-c--CcHHHHHHHHHHHHHhcce
Confidence 3 3 2456777888888888853
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=108.89 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=108.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (434)
++||+|||.|.||..||.++.++ |++|++++++.++ .+. ..+.|..... ..+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 58999999999999999999999 9999888776443 222 2333421000 0134
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
++++ +.+||+||.++|+.... .++.++.+.++++++|. .++.+.+..+.. ......+++.+|.=-|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 6654 56999999999976664 57888888888888774 566776654433 22333478888988877773
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
...- +..+...+.+..+.+..++..+|..
T Consensus 151 ----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 3446677889999999999999975
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=110.41 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=79.0
Q ss_pred hhccCCcccc-----c---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 93 IVRGGRDLFN-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 93 ~~~~~~~~f~-----~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
.+|+|+|... . ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++.... ..+...|+.
T Consensus 125 ~~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~- 194 (333)
T PRK13243 125 FVRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE- 194 (333)
T ss_pred HHHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-
Confidence 3567777531 0 1257899 9999999999999999999987 9998766654322 233344554
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s 211 (434)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+.+
T Consensus 195 ----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 195 ----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred ----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 357899999999999999976654 5664 688999999998855
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-08 Score=99.96 Aligned_cols=215 Identities=15% Similarity=0.170 Sum_probs=134.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (434)
+++|||||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999999 9999888776443 222 3333432100 0134
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcC-CCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~L-k~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (434)
+. +.+++||+||-++|+.... +++.++.... +++++|. -++++.+..+.. .....-+++.+|+=.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988775 5778888877 8899875 556666655544 22222368999998887773
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCCcccccchhhhcccccccchhhhhc-hHHHHHHHHHHHH
Q 013877 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRF 324 (434)
Q Consensus 247 ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~-aiG~~~~iettf~~E~~~Dlfge~tvL~G-~~~aliea~~~~~ 324 (434)
+..- +.++...+.+..+.+..++. .+|...+. . .+. .+.+.. .+..++..++ .+
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~-v--~d~--------pGfi~nRi~~~~~~Ea~-~l 207 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQVVR-A--QDR--------SGFVVNALLVPYLLSAI-RM 207 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCCceE-e--cCC--------CChHHHHHHHHHHHHHH-HH
Confidence 2334 45677888999999999988 59964111 1 111 122222 2222333333 35
Q ss_pred HHcCC-CHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcC
Q 013877 325 TENGM-NEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 325 v~~Gl-~~e~A~~~~~e~---l~Gli~~li~e~G~~~m~~~vs 363 (434)
++.|+ ++++.=...... =.| .-.++...|++.+++...
T Consensus 208 l~eGv~~~~dID~~~~~g~G~p~G-pf~~~D~~Gld~~~~~~~ 249 (286)
T PRK07819 208 VESGFATAEDIDKAMVLGCAHPMG-PLRLSDLVGLDTVKAIAD 249 (286)
T ss_pred HHhCCCCHHHHHHHHHhCCCCCCC-HHHHHHHhccHHHHHHHH
Confidence 56775 465533221111 115 455677777766665544
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-10 Score=101.88 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=78.0
Q ss_pred hccCCc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 94 VRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 94 ~~~~~~--~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
++.|+| ........+.| ++|||||+|.+|..+|+.|+.- |.+|+++++... ........++. ..+
T Consensus 18 ~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~-~~~~~~~~~~~-----~~~ 84 (178)
T PF02826_consen 18 QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPK-PEEGADEFGVE-----YVS 84 (178)
T ss_dssp HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCH-HHHHHHHTTEE-----ESS
T ss_pred HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCC-hhhhcccccce-----eee
Confidence 467788 22233478999 9999999999999999999977 999887776533 23335566775 568
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEE-ecc
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGL-SHG 213 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~-s~G 213 (434)
.+|++++||+|++++|.... ..++. +.+..||+|++++- +-|
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 99999999999999996554 35664 57889999998874 445
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-08 Score=98.40 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--Ccc------ccCC--CcCCHHhhh-ccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~~~--~~~~~~Ea~-~~AD 180 (434)
+||+|||.|+||.++|..|.++ |++|.++.|... ..+.-.+. +.. .... ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 999887777532 22222221 111 0000 124556666 5899
Q ss_pred EEEEeecchHHHHHHHHHHh-cCCCCc-EEEEeccch
Q 013877 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~-~Lk~g~-iL~~s~G~~ 215 (434)
+||++||+....++++++.+ ++++++ +|++..|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 566888884
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=104.07 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=118.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh---------------
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea--------------- 175 (434)
++||+|||+|.||.++|.+|.+. |++|+++++. +...+. ...|..+. .....++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9998766654 333333 33343220 01122222
Q ss_pred hccCCEEEEeecc----------hHHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhccccc--CC------CCc
Q 013877 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLD--FP------KNI 230 (434)
Q Consensus 176 ~~~ADiViLavpd----------~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-------~~~~~~i~--~~------~di 230 (434)
+++||+||+|+|+ ..+..+++.|.+++++|++|++.+.+..+ .+.+.... .| .++
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999997 46667888899999999998876554321 11111111 11 122
Q ss_pred cEEEecc--CCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhh
Q 013877 231 GVIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308 (434)
Q Consensus 231 ~VI~v~P--n~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tv 308 (434)
.+..+| -.+|..+.+... .+-++. . .+.+..+.+..+...++....+.++. .+-+.-.+-+.+.
T Consensus 153 -~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~~ 218 (415)
T PRK11064 153 -NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENSF 218 (415)
T ss_pred -EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHHH
Confidence 245677 456655432221 333332 2 36788999999999998542222221 1111112222221
Q ss_pred hhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 309 LLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 309 L~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
...--+++.-+...+.+.|+++++.++
T Consensus 219 -~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 219 -RDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 122223666677778888999887755
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=98.07 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=70.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc----------CCCcCCHHhhhccCCEE
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~~~~~~~Ea~~~ADiV 182 (434)
||+|||.|++|.++|.-|.++ |++|.++.|+. +..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99998887764 33333333222100 00146789999999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEE-Eeccc
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~ 214 (434)
++++|...+.+++++|.++++++++|+ .+.||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998765 55677
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=97.75 Aligned_cols=96 Identities=22% Similarity=0.304 Sum_probs=73.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC-------CcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-------TLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~-------~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+...++ .+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 4799999999999999999998 999887777533 344455556632000 12345554 89999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcE-EEEeccch
Q 013877 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~ 215 (434)
++|.....++++.+.+++.++++ |+...|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 99999999999999999988764 45778876
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=109.76 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=103.8
Q ss_pred hhccCCccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 93 IVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 93 ~~~~~~~~f~~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
.++.|+|.... ....+.| ++|||||+|+||..+|+.|+.. |++|+++++... ..+.....|+.. .
T Consensus 172 ~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~ 239 (385)
T PRK07574 172 QAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----H 239 (385)
T ss_pred HHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----c
Confidence 35678886432 2357999 9999999999999999999987 999877766532 223334456542 4
Q ss_pred CCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEeccCCC
Q 013877 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
.+.+|++++||+|++++|..... .++. +.+..||+|++|+.+ -|-. +..+++ +..-....||..--|.-+
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV~~~EPlp~ 318 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDVWFPQPAPA 318 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEecCCCCCCCC
Confidence 58999999999999999977664 6775 588999999988744 3432 122322 111123456766666433
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~q-dvsg~a~e 275 (434)
.+.. +.. -|.++++|- ..|.++.+
T Consensus 319 d~pL---~~~--------pNvilTPHiag~T~e~~~ 343 (385)
T PRK07574 319 DHPW---RTM--------PRNGMTPHISGTTLSAQA 343 (385)
T ss_pred CChH---HhC--------CCeEECCccccCcHHHHH
Confidence 3332 221 256677775 33444444
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=109.13 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=81.8
Q ss_pred hhccCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 93 ~~~~~~~~f~---~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
.+++|+|... .....+.| ++|||||+|+||..+|+.|+.. |.+|+++++.. ...+...+.|+.. .
T Consensus 179 ~~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~ 246 (386)
T PLN03139 179 QVVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----E 246 (386)
T ss_pred HHHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----c
Confidence 3567888632 12257999 9999999999999999999987 99987665542 2233344456543 4
Q ss_pred CCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEec
Q 013877 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
.+.+|++++||+|++++|..... .++. +++..||+|++|+.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 58999999999999999976664 6775 5889999999888553
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-08 Score=97.30 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=130.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--------CccccC--CCcCCHHhhhccCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~~~~~~~Ea~~~AD 180 (434)
++||+|||.|+-|.|+|+-|.++ |++|.++.|... ..+.-... |+...+ ..+.|+.+++++||
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 37999999999999999999999 999988877532 12111111 211100 12568999999999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEE-EEeccchh-------hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (434)
+|++++|-+.+.++++++.+++++++++ +.+.|+.. +.+++ .+|.+.-++..-|+....+
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV--------- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV--------- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH---------
Confidence 9999999999999999999999888865 46778742 23333 4454444556667665444
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH--HHHHHHHHHHHcCCC
Q 013877 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRRFTENGMN 330 (434)
Q Consensus 253 ~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--liea~~~~~v~~Gl~ 330 (434)
.+|.|+-+++.... .+.+..+...+-.. +|.--+..|..|.+ ++|.+-- -|-+++--+...|-.
T Consensus 142 ---a~g~pta~~vas~d----~~~a~~v~~~f~~~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 142 ---AQGLPTAVVVASND----QEAAEKVQALFSSP-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred ---hcCCCcEEEEecCC----HHHHHHHHHHhCCC-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChh
Confidence 25688867666532 23333444444444 44445566777776 6777765 334455555566666
Q ss_pred HHHHHH-HHHHHHHH
Q 013877 331 EDLAYK-NTVECITG 344 (434)
Q Consensus 331 ~e~A~~-~~~e~l~G 344 (434)
-.-|+. -++.||.-
T Consensus 208 akaalitrGL~Em~r 222 (329)
T COG0240 208 AKAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHHhHHHHHHH
Confidence 665554 45566653
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-08 Score=98.24 Aligned_cols=233 Identities=14% Similarity=0.162 Sum_probs=136.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------cEEEEEecCC----chhHHHHHH--------cCccccCC--CcC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG----SRSFAEARA--------AGFTEENG--TLG 170 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G--------~~Vivg~r~~----~~s~~~A~~--------~G~~~~~~--~~~ 170 (434)
||+|||.|+.|.++|.-|.++ | ++|.++.|.. +...+.-.+ .|+...+. ...
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 8888887632 221111111 12211010 135
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcE-EEEeccchhh---------hhhcccccCCCCccEEEeccCCC
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i~---------~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
|+++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++.++ .+..-|+.+
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~-~~lsGP~~A 150 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPC-GVLSGANLA 150 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCe-EEeeCcchH
Confidence 7889999999999999999999999999999998874 5688887543 1111 122222 234556554
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHH-
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE- 318 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~alie- 318 (434)
..+ . +|.++-+.+... .+ ...+.++.+...+-.. .|+-..-.|+.|.+ +||.+--++-
T Consensus 151 ~Ev-----a-------~~~pt~~~ia~~~~~-~~~~~a~~~~~lf~~~-----~frv~~s~Dv~GvE--l~galKNv~AI 210 (342)
T TIGR03376 151 NEV-----A-------KEKFSETTVGYRDPA-DFDVDARVLKALFHRP-----YFRVNVVDDVAGVE--IAGALKNVVAI 210 (342)
T ss_pred HHH-----H-------cCCCceEEEEeCCCc-chHHHHHHHHHHhCCC-----CEEEEEcCCcccch--hhHHHHHHHHH
Confidence 444 2 345554444332 11 1134455555555554 44445567788877 7888775332
Q ss_pred -HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHH----------HhcHHHHHHhcCCcchhhhhhhhhc
Q 013877 319 -SLFRRFTENGMNEDLAYK-NTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSA 376 (434)
Q Consensus 319 -a~~~~~v~~Gl~~e~A~~-~~~e~l~Gli~~li~----------e~G~~~m~~~vssp~~~eyg~~~~~ 376 (434)
+++--+...|..-.-|+. .++.|+.- +++.+. -.|++.|.--|++-....||..+..
T Consensus 211 a~Gi~~Gl~~g~N~~aalitrgl~Em~~-l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~ 279 (342)
T TIGR03376 211 AAGFVDGLGWGDNAKAAVMRRGLLEMIK-FARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAK 279 (342)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHh
Confidence 222223344544444433 45566653 444442 2345666666666233457766543
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-09 Score=106.86 Aligned_cols=150 Identities=23% Similarity=0.242 Sum_probs=103.2
Q ss_pred hccCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 94 VRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 94 ~~~~~~~f~~~-~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
+|+|.|..... ...+.| ||+||||+|.+|..+|+.++.- |++|+.+++..++ +.+...+... ..+.
T Consensus 125 ~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~L 191 (324)
T COG0111 125 QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSL 191 (324)
T ss_pred HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccH
Confidence 38889976222 257889 9999999999999999999987 9998766653333 2344455553 5689
Q ss_pred HhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEec-cc------hhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~-G~------~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
++++++||+|.+++|-..- ..++. +.+..||+|++++-++ |- .+..+++ +-.-...+||.---|..+.+.
T Consensus 192 d~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~EPl~~~~p 270 (324)
T COG0111 192 DELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEEEPLPADSP 270 (324)
T ss_pred HHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCCCCCCCCCh
Confidence 9999999999999995555 46775 5788899999887553 32 1333333 222234667777777666544
Q ss_pred HHHHHhhcccccCCCceEEEeecCC
Q 013877 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 244 vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
+|.. -+.++++|--
T Consensus 271 ---L~~~--------pnV~~TPHia 284 (324)
T COG0111 271 ---LWDL--------PNVILTPHIG 284 (324)
T ss_pred ---hhcC--------CCeEECCccc
Confidence 3332 3455677763
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=104.07 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
...+.| ++|||||+|+||.++|+.|+.. |++|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 367899 9999999999999999999988 9998776654322111 1111 3478999999999999
Q ss_pred eecchHH-HHHH-HHHHhcCCCCcEEE-Eeccc
Q 013877 185 LISDAAQ-ADNY-EKIFSCMKPNSILG-LSHGF 214 (434)
Q Consensus 185 avpd~a~-~~vl-~eI~~~Lk~g~iL~-~s~G~ 214 (434)
++|.... ..++ +++++.|++|++|+ .+-|-
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 9997765 3444 46889999999887 44564
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=104.97 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=77.4
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+++|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .|+.. ...++
T Consensus 106 ~~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l 167 (303)
T PRK06436 106 NMKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEP 167 (303)
T ss_pred HHHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCH
Confidence 456788875544 68999 9999999999999999988876 9998776654211 23321 03578
Q ss_pred HhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe
Q 013877 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s 211 (434)
+|++++||+|++++|..... .++. +.+..||+|++++.+
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~ 208 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINV 208 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEEC
Confidence 99999999999999977764 5665 578889999988744
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=101.04 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=119.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ -...++.+|..- ...+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 6899999999999999999999 99988887765 334555566542 34555555 57899999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecc---chhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 QADNYEKIFSC-MKPNSILGLSHG---FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl~eI~~~-Lk~g~iL~~s~G---~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
+..++...-+. +|.|+++++.-. |...-+++ .+|+|+|++.+||..--..+ . ..++|.|.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv----n----h~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV----N----HEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC----C----CccccCceEEEEe
Confidence 88888876555 899998875544 33333444 78999999999995322111 0 1257888866544
Q ss_pred CCC----CHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 267 QDV----DGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 267 qdv----sg~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
.-- ..+.-|...+++.-.|+. .++.+.+++++.
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDki 226 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDKI 226 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeeccccc
Confidence 321 257889999999999984 666666677644
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=104.84 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=69.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nL-rds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..+.| ++|||||+|+||.++|+.| +.. |.+|++.++...+. ...++.. ..+.++++++||+|++
T Consensus 142 ~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIvl 206 (332)
T PRK08605 142 RSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVTL 206 (332)
T ss_pred ceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEEE
Confidence 57899 9999999999999999999 434 88876555432221 1122321 3578999999999999
Q ss_pred eecchHHHHHH--HHHHhcCCCCcEEEEe-ccc
Q 013877 185 LISDAAQADNY--EKIFSCMKPNSILGLS-HGF 214 (434)
Q Consensus 185 avpd~a~~~vl--~eI~~~Lk~g~iL~~s-~G~ 214 (434)
++|.......+ .+..+.||+|++|+.+ -|.
T Consensus 207 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred eCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99988776544 3578899999988744 453
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-09 Score=104.83 Aligned_cols=135 Identities=25% Similarity=0.280 Sum_probs=95.2
Q ss_pred cchhhccCCcccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 90 DEYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 90 ~e~~~~~~~~~f~-----~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
.+.-+|.|+|... .....+.| ||+||||+|.||.++|+.++.- |.+|+++.+... .+...+.++.
T Consensus 121 ~~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~- 190 (324)
T COG1052 121 GDRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR- 190 (324)
T ss_pred HHHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce-
Confidence 3456788888664 33468999 9999999999999999999855 889877766532 2333334454
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEe
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAV 235 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v 235 (434)
..+.+|++++||+|++.+|..... .++. +....||+|.+|+-+ =|-. +.-+++ +..-....||.--
T Consensus 191 ----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglDV~e~ 265 (324)
T COG1052 191 ----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLDVFEN 265 (324)
T ss_pred ----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEeeecCC
Confidence 456999999999999999987775 5665 588899999988844 3421 223333 2222346677777
Q ss_pred ccCC
Q 013877 236 CPKG 239 (434)
Q Consensus 236 ~Pn~ 239 (434)
-|.-
T Consensus 266 Ep~~ 269 (324)
T COG1052 266 EPAL 269 (324)
T ss_pred CCCC
Confidence 7754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-08 Score=89.86 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-----------HcCcccc--------C-CCcCCH
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE--------N-GTLGDI 172 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~--------~-~~~~~~ 172 (434)
||+|||.|.||.++|..+..+ |++|++.+...+ ..+.+. +.|-... . ....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999999 999988776533 222211 1121100 0 014577
Q ss_pred HhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHh
Q 013877 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (434)
++++ +||+||=++|..... +++.++.+.+.++++| +-++++.+..+.. ..+..-+++.+|+=.|.+.++
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 7877 999999999976664 6999999999999987 4778888887765 333344799999988876521
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 250 ~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.-- +..+...+.+.++.+.+++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 4457778889999999999999853
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=103.61 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=76.8
Q ss_pred hccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH
Q 013877 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (434)
Q Consensus 94 ~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~ 173 (434)
.+.|+|..... ..++| ++|||||+|+||..+|+.|+.. |++|+++.+...+ . .++.. ..+..+.+
T Consensus 121 ~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~ 185 (312)
T PRK15469 121 QNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELS 185 (312)
T ss_pred HHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHH
Confidence 46678854333 56889 9999999999999999999987 9998776654221 1 12211 01135789
Q ss_pred hhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEec
Q 013877 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 186 e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 186 AFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 9999999999999976664 6665 5888999999887553
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=103.59 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=99.9
Q ss_pred hhhccCCccccc----cccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC
Q 013877 92 YIVRGGRDLFNL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (434)
Q Consensus 92 ~~~~~~~~~f~~----~~~~~~g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~ 166 (434)
..+|+|+|.... ....+.| ++|||||+|+||..+|+.++ .- |.+|++.++... .+.....|..
T Consensus 123 ~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~--- 190 (323)
T PRK15409 123 ERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR--- 190 (323)
T ss_pred HHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE---
Confidence 446778885321 1257999 99999999999999999987 44 888876554422 2222344554
Q ss_pred CCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v~P 237 (434)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+-+ -|-. +.-+++ +.......||..--|
T Consensus 191 --~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~EP 267 (323)
T PRK15409 191 --YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGLDVFEQEP 267 (323)
T ss_pred --ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCCC
Confidence 458999999999999999966654 5665 588899999988744 3422 223332 111123456666666
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~ 274 (434)
-.+.+. ++. =-+.++++|-. .|.++.
T Consensus 268 ~~~~~p---L~~--------~~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 268 LSVDSP---LLS--------LPNVVAVPHIGSATHETR 294 (323)
T ss_pred CCCCch---hhc--------CCCEEEcCcCCCCcHHHH
Confidence 432222 222 14667788863 333443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.7e-09 Score=110.37 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=80.7
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. ..+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCC
Confidence 45677885432 1257899 9999999999999999999987 99987665532 234455567653 347
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.+
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 228 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNC 228 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEc
Confidence 99999999999999997755 45664 577899999988755
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=100.91 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=101.8
Q ss_pred hhccCCcccccc-------ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc
Q 013877 93 IVRGGRDLFNLL-------PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (434)
Q Consensus 93 ~~~~~~~~f~~~-------~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (434)
.+|+|+|..... ...+.| |+|||||+|++|..+|+.++.- |.+|+++++.. +. ...++.
T Consensus 121 ~~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~-~~----~~~~~~-- 186 (311)
T PRK08410 121 YVKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSG-KN----KNEEYE-- 186 (311)
T ss_pred HHHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCc-cc----cccCce--
Confidence 357778853311 247899 9999999999999999999866 99987665532 11 123443
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eeccch------hhhhhcccccCCCCccEEEec
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (434)
..+.+|++++||+|++++|-... ..++. +.+..||||++|+ .+-|-. +..+++..+. ...||..--
T Consensus 187 ---~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~E 261 (311)
T PRK08410 187 ---RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKE 261 (311)
T ss_pred ---eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCC
Confidence 45899999999999999996555 46675 5888999999887 444532 2334332222 456777666
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 013877 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (434)
Q Consensus 237 Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a 277 (434)
|..+.+.. +..- .=-|.++++|-- .|.++.+..
T Consensus 262 P~~~~~pL---~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 262 PMEKNHPL---LSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCChh---hccC-----CCCCEEECCccccCCHHHHHHH
Confidence 64443332 2110 002677888863 344544443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=109.38 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=81.1
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| |+|||||+|+||..+|+.|+.. |++|+++++.. ..+.+...|+.. .+
T Consensus 122 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~ 187 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VS 187 (526)
T ss_pred HHHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----Ec
Confidence 35677885422 1257899 9999999999999999999987 99987666542 234455567653 48
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.+
T Consensus 188 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~ 229 (526)
T PRK13581 188 LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINC 229 (526)
T ss_pred HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEEC
Confidence 99999999999999997765 46774 688999999988755
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=91.68 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=73.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC---------CcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|+||..+|..|.++ |++|.+..| .+ ..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 999887777 33 344455556532110 123456667899999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
|+++|..+..++++++.+++.++++| +...|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 99999999999999999999888765 4667875
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.9e-08 Score=96.68 Aligned_cols=97 Identities=27% Similarity=0.331 Sum_probs=72.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC--C----------CcCCHHhhhcc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G----------TLGDIYETISG 178 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~----------~~~~~~Ea~~~ 178 (434)
|+||+|||+|.||.++|..|.++ |++|++..|. +..+...+.|....+ + ...+..++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence 47899999999999999999999 9998887764 223444555653211 0 01222356789
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccch
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~ 215 (434)
+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 74 ~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 74 ADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 9999999999998999999999999988765 556775
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-07 Score=90.74 Aligned_cols=225 Identities=13% Similarity=0.210 Sum_probs=153.3
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHcCccccC
Q 013877 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (434)
Q Consensus 111 ~kkIgIIG~G~m--------------------G~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~ 166 (434)
++||+|.|.||| |..||-.+..+ |++|+....+ +...|++-+++|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 378888888887 56677777777 9999877543 335599999999986
Q ss_pred CCcCCHHhhhccCCEEEEeecch-HHHHHHHHHHhcCCCCcEEEEe---ccchhh-hhhcccccCCCCccEEEeccC-CC
Q 013877 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLS---HGFLLG-HLQSMGLDFPKNIGVIAVCPK-GM 240 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~-a~~~vl~eI~~~Lk~g~iL~~s---~G~~i~-~~~~~~i~~~~di~VI~v~Pn-~p 240 (434)
+.|-.++++.+++.+|-||=. ....+.++|.+++..|++|+-. +-+.+. .++...-..++|+-|...||- .|
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 677789999999999999987 5568999999999999998633 344443 333322233478899999994 46
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhchHHH--HH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG--IV 317 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~~~a--li 317 (434)
|+.-.+.|.-+ |++-.. -.-+|.++.+++.+|+++.|.. +++. .|+....+- +|++.. .+
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~VaD-mg~lvtav~l 213 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVAD-MGVLVTAVAL 213 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhhh-hHHHHHHHHH
Confidence 66654455443 222211 1235789999999999999964 1222 222222222 333332 33
Q ss_pred HHHHHH---H-HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 318 ESLFRR---F-TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 318 ea~~~~---~-v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
.+..|. + .-.|-|.|+--+....++. -++-++-.+|++.|...+.
T Consensus 214 ~gvldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 214 SGVLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 333332 2 2468898888887777776 5799999999988877654
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=103.22 Aligned_cols=163 Identities=22% Similarity=0.216 Sum_probs=99.9
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH--H----cCccccC
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----AGFTEEN 166 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--~----~G~~~~~ 166 (434)
.+++|+|..+.+ ..+.| ++|||||+|.||..+|+.|+.. |.+|+++++...+...... . ..+....
T Consensus 143 ~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~ 214 (347)
T PLN02928 143 SLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEK 214 (347)
T ss_pred HHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhcccccccccccccc
Confidence 356677854333 57999 9999999999999999999877 9998766654221111100 0 0000000
Q ss_pred CCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe-ccch------hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s-~G~~------i~~~~~~~i~~~~di~VI~v~P 237 (434)
....+.+|++++||+|++++|.... ..++. +.+..||+|++|+.+ -|-. +.-+++ +.......||...-|
T Consensus 215 ~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~EP 293 (347)
T PLN02928 215 GGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWSEP 293 (347)
T ss_pred CcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCCCC
Confidence 1245889999999999999996555 45665 688899999988854 3432 222222 112123557776666
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e 275 (434)
-.+.+. ++.. -+.++++|.. .+.+..+
T Consensus 294 ~~~~~p---L~~~--------~nviiTPHia~~t~~~~~ 321 (347)
T PLN02928 294 FDPDDP---ILKH--------PNVIITPHVAGVTEYSYR 321 (347)
T ss_pred CCCCCh---hhcC--------CCEEECCcCCCChHHHHH
Confidence 433332 2221 3667888863 3444443
|
|
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-08 Score=84.77 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=59.2
Q ss_pred ccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 299 RSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 299 ~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.++.|+..++++||+|+ +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..+++.|++|..
T Consensus 2 ~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tPgG 75 (107)
T PF14748_consen 2 DEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTPGG 75 (107)
T ss_dssp SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-TTS
T ss_pred CHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCCCC
Confidence 34578888999999998 88999999999999999999999999999 8999998885 999999999964
|
... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=99.81 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=93.6
Q ss_pred cccccchhhccCCc----cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC
Q 013877 86 LADRDEYIVRGGRD----LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (434)
Q Consensus 86 ~~~~~e~~~~~~~~----~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (434)
|-+-.|. ++.|+| .+..+ +.++| |+|||+|+|+||..+|++|+.. |..+.+..|. ....+.+.+.+
T Consensus 136 ~~~g~~~-~~~g~w~~~~~~~~g-~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 136 FSEGNEM-VRNGGWGWAGGWPLG-YDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhh-hhcCCccccCCcccc-ccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 4444443 556667 22223 78899 9999999999999999999986 8444444443 44455665555
Q ss_pred ccccCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEE-Eeccchh------hhhhcccccCCCCccE
Q 013877 162 FTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSMGLDFPKNIGV 232 (434)
Q Consensus 162 ~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~-~s~G~~i------~~~~~~~i~~~~di~V 232 (434)
.. ..+.+|.+.++|+|++++|..... .++. ++..+||+|.+|+ .+=|--+ ..+.+ +-....+.||
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCcccccccc
Confidence 54 358999999999999999988775 6776 6899999999877 4434321 22222 2233456777
Q ss_pred EEecc
Q 013877 233 IAVCP 237 (434)
Q Consensus 233 I~v~P 237 (434)
.---|
T Consensus 280 f~~EP 284 (336)
T KOG0069|consen 280 FEPEP 284 (336)
T ss_pred cCCCC
Confidence 77777
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=87.23 Aligned_cols=126 Identities=15% Similarity=0.033 Sum_probs=92.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||- |.||..++..++++ |+.|. +++||+||||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 48999998 99999999999999 98864 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
..++++++. .+|+|+.+++-...+ ...++|..||.. |+. .++...+ -++++ +....+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMf-Gp~------~a~~~lf--~~~iv-~~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLF-GPM------SYNDGVH--RTVIF-INDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCC-CCC------cCccccc--ceEEE-ECCCCC
Confidence 999998864 268899988753221 134799999944 432 1111111 24444 455556
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhccc
Q 013877 271 GRATNVALGWSVALGSPFTFATTLEQEYRS 300 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iettf~~E~~~ 300 (434)
.++.+..++++. | .++++++.++|++.
T Consensus 101 ~~~~~~~~~l~~--G-~~~~~~t~eeHD~~ 127 (197)
T PRK06444 101 DNYLNEINEMFR--G-YHFVEMTADEHDLL 127 (197)
T ss_pred HHHHHHHHHHHc--C-CEEEEeCHHHHHHH
Confidence 678888999988 6 47888988888754
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=94.71 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=98.7
Q ss_pred hccCCccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC
Q 013877 94 VRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (434)
Q Consensus 94 ~~~~~~~f~~-------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~ 166 (434)
+++|+|.... ....+.| ++|||||+|.+|..+|+.++.- |.+|+++.+.... .....
T Consensus 124 ~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~--- 187 (314)
T PRK06932 124 QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG--- 187 (314)
T ss_pred HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc---
Confidence 4567774321 1247899 9999999999999999999866 9898655432111 11111
Q ss_pred CCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eeccch------hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G~~------i~~~~~~~i~~~~di~VI~v~P 237 (434)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-. +..+++ +..-....||..--|
T Consensus 188 --~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaLDV~~~EP 264 (314)
T PRK06932 188 --YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAALDVLVKEP 264 (314)
T ss_pred --cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEEecCCCCC
Confidence 34789999999999999996555 46675 5888999999887 455532 223332 112223567777667
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a~ 278 (434)
-.+.+...+.+.+- -|.++++|-- .|.++.+...
T Consensus 265 ~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 265 PEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred CCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHHH
Confidence 44333321111111 3667777763 3445554443
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=99.49 Aligned_cols=214 Identities=10% Similarity=0.074 Sum_probs=136.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCcccc-------C--CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------N--GT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~-------~--~~ 168 (434)
..+++|+|||.|.||..+|..+..+ |++|++.+...+ ..+.+ .+.|-... + ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 999987765533 22221 12221100 0 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +.+++||+||=++|..... +++.++.+.++|+++|. -++++.+..+.. ..+..-+|+..|+=-|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 5679999999999966664 79999999999999884 677888776655 223334799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
.-- |..+...+.+.++.+.+++..+|..-++- .+ ..+-+.+-+..-+-.-.-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d-------~pGfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIVV----ND-------CPGFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEEe----CC-------cccchHHHHHHHHHHHHHHHH
Confidence 222 33566788899999999999999652211 11 112233333321122233467
Q ss_pred HcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHH
Q 013877 326 ENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVY 359 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~---l~Gli~~li~e~G~~~m~ 359 (434)
+.|.++++-=...-.. =.|+ -.++-..|++.++
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~GP-f~l~D~~Gld~~~ 550 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPMGP-AYLLDVVGIDTGH 550 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCccCH-HHHHHhhhHHHHH
Confidence 8898887644321111 1252 4566666775444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-07 Score=100.39 Aligned_cols=212 Identities=11% Similarity=0.126 Sum_probs=134.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCcccc-------C--CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N--GT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------~--~~ 168 (434)
..+++|+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|-... + ..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3458999999999999999999999 999987765432 2222 122221100 0 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..++ +.+++||+||=++|..... +++.++.+.++|+++|. -++++.+..+.. .....-+|+..|+=.|.+.++
T Consensus 406 ~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc
Confidence 2344 4679999999999976664 79999999999999884 677888876655 222334799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
.-- |..+...+.+.++.+.+++..+|..-++- .+ ..+-+.+-+..-+-.-.-.++
T Consensus 482 -------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d-------~pGFi~NRi~~~~~~ea~~lv 536 (737)
T TIGR02441 482 -------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIVV----KD-------GPGFYTTRCLGPMLAEVIRLL 536 (737)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEEE----CC-------cCCchHHHHHHHHHHHHHHHH
Confidence 222 33466788899999999999999652111 11 112222222221111222467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHH
Q 013877 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAV 358 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m 358 (434)
+.|+++++-=.. +..+ .|+ -.++-..|++.+
T Consensus 537 ~eGv~~~~ID~a-~~~~G~p~GP-~~l~D~vGld~~ 570 (737)
T TIGR02441 537 QEGVDPKKLDKL-TTKFGFPVGA-ATLADEVGVDVA 570 (737)
T ss_pred HcCCCHHHHHHH-HHHcCCCCCH-HHHHHHhhHHHH
Confidence 889988765442 2221 142 355666666443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-08 Score=97.80 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=98.1
Q ss_pred hhccCCccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc
Q 013877 93 IVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (434)
Q Consensus 93 ~~~~~~~~f~~-------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (434)
-+|+|+|.... ....+.| ++|||||+|++|..+|+.++.- |.+|+++++.... ....
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 45778885432 1246899 9999999999999999999866 9998765543211 1122
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eeccch------hhhhhcccccCCCCccEEEec
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (434)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-. +..+++ +......+||.---
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 263 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSVE 263 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 34789999999999999996555 46665 5888999999887 444532 223332 22222356777666
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 013877 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (434)
Q Consensus 237 Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~ 276 (434)
|-.+.+. ++... =-+.++++|-- .|.+..+.
T Consensus 264 P~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~ 295 (317)
T PRK06487 264 PPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQR 295 (317)
T ss_pred CCCCCCc---hhhcC------CCCEEECCccccCCHHHHHH
Confidence 6433322 22100 02667777763 34444433
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=95.96 Aligned_cols=214 Identities=10% Similarity=0.089 Sum_probs=137.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC---------CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (434)
+.+++|+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|..... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999999 999987776533 2222 2222221100 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +.+++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976664 79999999999999884 678888776655 223334799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
.-- |..+...+.+.++.+.+++..+|..-++ . .+ .-+-+.+-+...+-.-+-.++
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~-v---~d-------~pGfv~nRi~~~~~~ea~~lv 514 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIV-V---ND-------CPGFFVNRVLFPYFAGFSQLL 514 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEE-e---cC-------cCchhHHHHHHHHHHHHHHHH
Confidence 222 3357778889999999999999965221 1 11 112233333221112233467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 013877 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~ 359 (434)
+.|.++++-=...-+.+ .| --+++-..|++.++
T Consensus 515 ~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~ 550 (715)
T PRK11730 515 RDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAH 550 (715)
T ss_pred HcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHH
Confidence 88888876544322211 25 23566666765444
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-07 Score=93.35 Aligned_cols=201 Identities=14% Similarity=0.117 Sum_probs=109.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc------------CCCcCCHHhhhccC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~------------~~~~~~~~Ea~~~A 179 (434)
+||+|||+|.||..+|.+|.+ |++|++.++. +...+... .|..+- .-...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999754 6787655554 43344433 444210 00123445678999
Q ss_pred CEEEEeecchH----------HHHHHHHHHhcCCCCcEEEEeccchhh--------hhhc-ccccCCCCccEEEecc--C
Q 013877 180 DLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG--------HLQS-MGLDFPKNIGVIAVCP--K 238 (434)
Q Consensus 180 DiViLavpd~a----------~~~vl~eI~~~Lk~g~iL~~s~G~~i~--------~~~~-~~i~~~~di~VI~v~P--n 238 (434)
|+||+|+|... .....+.|.+++++|++|++.+-+..+ .+++ .++....+ .++...| -
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~-~~~~~~PE~v 156 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD-FYVGYSPERI 156 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC-eeEeeCCCcC
Confidence 99999999651 223344689999999988766543211 1111 12221111 2233333 4
Q ss_pred CChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhchHHHHH
Q 013877 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (434)
Q Consensus 239 ~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~~~ali 317 (434)
.+|..+.++. -.+- +.... +.+..+.+..+...+... .+..++ ..+-+.-.+-+.+ +...--+++
T Consensus 157 ~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~~AE~~Kl~~N~-~~av~Ia~~ 222 (425)
T PRK15182 157 NPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAES-IKVAEAAKVIENT-QRDLNIALV 222 (425)
T ss_pred CCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecC-HHHHHHHHHHHHH-HHHHHHHHH
Confidence 4444421111 1233 33343 356777888888887521 122121 1111111121221 122223466
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 013877 318 ESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~ 336 (434)
.-++..+.+.|++.++.+.
T Consensus 223 NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 223 NELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred HHHHHHHHHhCcCHHHHHH
Confidence 6678888889999887765
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.2e-08 Score=100.79 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=76.3
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
.+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |.+|+++++.. + ....++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~-~----~~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIED-K----LPLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCc-c----cccCCcee----cCC
Confidence 35677885432 1367999 9999999999999999999877 99987655431 1 11123322 458
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
++|++++||+|++++|.... ..++. +.+..||+|++|+-+
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 99999999999999996554 46775 588899999988744
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=97.20 Aligned_cols=212 Identities=11% Similarity=0.137 Sum_probs=134.3
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC---------CC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (434)
.+++|+|||.|.||..+|..+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999988 77 999987765432 22222 122211000 00
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +++++||+||=++|..... +++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 5689999999999976664 79999999999999884 677888877755 222334799999988887631
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRF 324 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~ 324 (434)
.-- |.++...+.+..+.+.+++..+|...++-. + .-+-+.+-+.. ++..++ .+
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~---d--------~pGfi~nRl~~~~~~EA~-~l 510 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIVVR---D--------GAGFYVNRILAPYINEAA-RL 510 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEEEe---c--------cCcHHHHHHHHHHHHHHH-HH
Confidence 222 445778889999999999999997522111 1 11222232222 333333 46
Q ss_pred HHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 013877 325 TENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (434)
Q Consensus 325 v~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~~ 360 (434)
++.|+++++.=. ++..+ .| --.++-..|++.+++
T Consensus 511 v~eGv~~~dID~-a~~~~G~p~G-Pf~~~D~~Gld~~~~ 547 (708)
T PRK11154 511 LLEGEPIEHIDA-ALVKFGFPVG-PITLLDEVGIDVGTK 547 (708)
T ss_pred HHcCCCHHHHHH-HHHHcCCCCC-HHHHHHHhhhHHHHH
Confidence 778988755433 22211 14 244555566654443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=96.80 Aligned_cols=211 Identities=12% Similarity=0.136 Sum_probs=132.9
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC---------CC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (434)
.+++|+|||.|.||..+|.-+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 58 999987765532 22222 112211000 01
Q ss_pred cCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHH
Q 013877 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (434)
..+. +++++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 5789999999999977664 79999999999999884 677888876655 222334799999988877631
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH--HHHHHHHH
Q 013877 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRR 323 (434)
Q Consensus 246 ~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--liea~~~~ 323 (434)
.-- |..+...+.+..+.+.+++..+|..-++ . .+ .-+-+.+-+.. +.|+ -.
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv~-v--~d--------~pGfi~nRl~~~~~~Ea--~~ 504 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPIV-V--AD--------KAGFYVNRILAPYMNEA--AR 504 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEE-E--cc--------ccchHHHHHHHHHHHHH--HH
Confidence 222 3346677889999999999999965221 1 11 11222222222 3333 23
Q ss_pred HHHcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHH
Q 013877 324 FTENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYN 360 (434)
Q Consensus 324 ~v~~Gl~~e~A~~~~~e~---l~Gli~~li~e~G~~~m~~ 360 (434)
+++.|.++++.=.. +.. -.| .-.++-..|++.+++
T Consensus 505 l~~~G~~~~dID~a-~~~~G~p~G-Pf~l~D~vGld~~~~ 542 (699)
T TIGR02440 505 LLLEGEPVEHIDKA-LVKFGFPVG-PITLLDEVGIDVGAK 542 (699)
T ss_pred HHHCCCCHHHHHHH-HHHcCCCcC-HHHHHHHhchHHHHH
Confidence 56788887654432 221 124 345666667654443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-08 Score=87.09 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=66.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+..++++++|+|++++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 566 9999999999999999999987 6 5777777764444444544443100001456777889999999999
Q ss_pred cchHH-HHHHHHHHhcCCCCcEEEEecc
Q 013877 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~-~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+..+ .+-.......++++++++++.-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~ 117 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVY 117 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCc
Confidence 99886 1111001233678888887643
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-07 Score=91.44 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=70.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.+|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 36788 9999999999999999999988 9999888886433 344555565420 123567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+|...+. ++..+.|+++.+|++.+
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeC
Confidence 9976332 34567789999888664
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-06 Score=85.92 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=108.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCccccC---------CCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~~~~~ 171 (434)
++||+|||.|.||+.+|..+... |++|.+.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999999887 899988776522 222333333322110 00122
Q ss_pred HHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
+. ++++||+||=+++-..- .+++.++-++.+|+++| +-.+++++..+.+. ..-| -+|+..|+=-|.+.+
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rp--er~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRP--ERFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCc--hhEEEEeccCCCCcc----
Confidence 22 78999999999995554 37999999999999998 57788888766552 2323 369999998888773
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~al-iav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.+ +......+.+..+.+.+++..+|.+
T Consensus 149 -----------~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 149 -----------PLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred -----------eeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 321 2245566779999999999999943
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=91.19 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhcc---CCEEEEeecchHHH-H
Q 013877 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQA-D 193 (434)
Q Consensus 122 mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~---ADiViLavpd~a~~-~ 193 (434)
||.+||+||.++ |++|.+++|+.++..+..... |+.. ..+++|+++. +|+||+++|+..+. +
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988866655554432 3554 6789998875 89999999988665 7
Q ss_pred HHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 194 NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 194 vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
|++++.++|.+|.+|++..-.... .... ..-.+++.+| -+|-.-|.. .-+ .|- + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fv-dapVSGG~~---gA~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFI-GMGVSGGEE---GAL-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEE-ecCCCCCHH---HHh-------cCC-E-EEEeC--C
Confidence 888999999999999988643211 1111 1113567766 455222222 111 354 4 44565 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 013877 271 GRATNVALGWSVALGSP 287 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~ 287 (434)
.++.+.++-++..+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 68999999999999863
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=90.68 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=111.5
Q ss_pred chhhccCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 91 EYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 91 e~~~~~~~~~f~~~-~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
-.-++.|+|...+. .-.+.| |++||||+|.+|.-.|..++.- |..++.++.- ...+++++.|+. .
T Consensus 126 ~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq-----~ 191 (406)
T KOG0068|consen 126 SASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ-----L 191 (406)
T ss_pred heeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce-----e
Confidence 33467899977665 679999 9999999999999999999887 8887655544 346788888987 6
Q ss_pred CCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-cc-c-----hhhhhhcccccCCCCccEEEeccCCC
Q 013877 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG-F-----LLGHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G-~-----~i~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
.+.+|++..||+|-|.+|-.... .++. +-+..||+|..|+-+ -| + .+.-+++ +..-..-+||...-|..-
T Consensus 192 vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Epp~~ 270 (406)
T KOG0068|consen 192 VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEPPKN 270 (406)
T ss_pred eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCCCcc
Confidence 78999999999999999965554 5665 577889999977744 33 2 1223333 333344567887777655
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg 271 (434)
+.. +++ ..- -+.+.++|+..+-
T Consensus 271 ~~~-~~L-v~h-------pnVi~TpHlgasT 292 (406)
T KOG0068|consen 271 GWD-SEL-VSH-------PNVIVTPHLGAST 292 (406)
T ss_pred chh-HHH-hcC-------CceeecCccccch
Confidence 422 122 221 3566788887665
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.1e-06 Score=82.80 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=95.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCC-------cCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------~~~~~Ea~~~ADiV 182 (434)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+...+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7899999999999999999999 99998887753 233445564321 110 11223356789999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEE-EEeccchh-hhhhcccccCCCCccEEE------eccCCChhhHHHHHhhcccc
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i-~~~~~~~i~~~~di~VI~------v~Pn~pg~~vr~ly~~G~~~ 254 (434)
|++||-.+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. .|+. .....|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999988888999999999887755 46668753 23332 33433 2332 3344555441 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCC
Q 013877 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSP 287 (434)
Q Consensus 255 ~G~Gv~aliav~qdvs-----g~a~e~a~~la~aiG~~ 287 (434)
.|.|... +....... .+..+...+++...|..
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~ 180 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID 180 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC
Confidence 1344333 33322222 34555566778887865
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-07 Score=97.70 Aligned_cols=136 Identities=13% Similarity=-0.036 Sum_probs=102.2
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCC-ccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~d-i~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
||||+|+....++++++.|+++++++|+|+.+++....+...-.++.+ .+||..|| +.|++. ..|+.....+++|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~-~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRES-SGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcc-hhhhhhChhHhCCCe
Confidence 689999999999999999999999999999998743222111133432 57999999 556553 456666666678899
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
+++++..+.+.++++.+++++..+|+ +++.++.++|++.- +.+++..|-+.-++.+.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~-----A~iShlpH~~a~~l~~~~~ 137 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVF-----AAVSHLPHVLSFALVEQIL 137 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHH-----HHHhhHHHHHHHHHHHHHh
Confidence 99999998889999999999999995 68888888888553 3345555555555555543
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-07 Score=95.53 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=67.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++. +. . ...... ..+.+|++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~--~~--~-~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPP--RA--D-RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCc--cc--c-cccccc-----cCCHHHHHhhCCEEEEe
Confidence 35789 9999999999999999999987 9998765432 11 0 111111 45899999999999999
Q ss_pred ecchH-----HHHHHH-HHHhcCCCCcEEEEec
Q 013877 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+|-.. ...++. +.+..||+|++|+-++
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 99554 345664 5788999999988553
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-07 Score=95.31 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 45788 9999999999999999999987 9998766542111 1 12111 45899999999999999
Q ss_pred ecchH-----HHHHHH-HHHhcCCCCcEEEEe
Q 013877 186 ISDAA-----QADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~g~iL~~s 211 (434)
+|... ...++. +.+..||+|++|+-+
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 99754 345665 578889999988744
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-07 Score=92.92 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=68.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-HHHcCc-------cccC-CCcCCHHhhh
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYETI 176 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~-------~~~~-~~~~~~~Ea~ 176 (434)
..+.| ++|||||+|.+|..+|+.|+.. +|.+|+++++........ ....|. ...+ ....+.+|++
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~-----fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEG-----FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 56899 9999999999999999998633 288987665442211111 011221 0000 0124799999
Q ss_pred ccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 177 SGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 177 ~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
++||+|++++|-... ..++. +.+..||+|++|+-+
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~ 271 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNA 271 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEEC
Confidence 999999999996554 46775 588899999998844
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-06 Score=87.57 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----------------cCccccCCCcCCHHhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~~~~~~~Ea 175 (434)
+||+|||+|.||..+|..+ .. |++|++.++. ....+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 4899999999999999655 46 8888765554 433444332 11110 002346788
Q ss_pred hccCCEEEEeecch-----------HHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 176 ~~~ADiViLavpd~-----------a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+++||+||+|+|.. ...+++++|.+ +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999954 33567778877 79999887665443
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=80.36 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=125.9
Q ss_pred HcCccccCCCcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccch---hh-hhhcccccCCCCccEE
Q 013877 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVI 233 (434)
Q Consensus 159 ~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~---i~-~~~~~~i~~~~di~VI 233 (434)
+.|+.+ +.|-.|+++++|++|+-+|-.. +.++++++.+++++|++|+.+.-++ +. .++. +. ++|+.|.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCee
Confidence 468876 6778899999999999999776 6899999999999999998665443 21 2222 22 5899999
Q ss_pred EeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhch
Q 013877 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (434)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~ 312 (434)
..||-+ .+.. .| -.++ ...-++.++.+...+|++.+|.. +.+ ..|+.+..+-.|-.
T Consensus 197 S~HPaa-VPgt------------~~-q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~--------PA~LvspV~DMgS~ 253 (340)
T TIGR01723 197 SYHPGC-VPEM------------KG-QVYI-AEGYASEEAVNKLYELGKKARGKAFKM--------PANLLGPVCDMCSA 253 (340)
T ss_pred ccCCCC-CCCC------------CC-ceEe-ecccCCHHHHHHHHHHHHHhCCCeeec--------chhhccchhhHHHH
Confidence 999933 2221 12 1223 36778999999999999999985 122 22344444444444
Q ss_pred HHH----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 313 VHG----IVESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 313 ~~a----liea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+.+ .+..-++..+ -.|-|.+.+-..+.++|.. ++.|+.++|+..|.+.+.
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLn 308 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALD 308 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcC
Confidence 444 3333444454 4599999999999999985 999999999999999886
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-07 Score=82.71 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=66.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|.... +-..-+|..+||. +.+.+|+++.+|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 35677 9999999999999999999998 9999887665 4445566778998 46899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
|-...+. -.+.++.||+|++|..+..|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875531 124566799999998776664
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-06 Score=82.39 Aligned_cols=256 Identities=16% Similarity=0.150 Sum_probs=154.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc---cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS---GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~---~ADiViLavpd 188 (434)
++||.||+|.||..+.++|.+. |++|+ +++.+....+.+..+|... +.++.|.++ ..-+|-+.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 5899999999999999999999 99975 5566677788888999764 556666543 46789999998
Q ss_pred hHH-HHHHHHHHhcCCCCcEEEEeccchhh-hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 189 ~a~-~~vl~eI~~~Lk~g~iL~~s~G~~i~-~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..+ ..+++++.|.|.+|.+|++-.--+.+ .++.....-.++++++-+--.+-..-.+ .|.. +-+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~-----------~G~~--lMiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE-----------RGYC--LMIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhh-----------cCce--EEec
Confidence 845 57999999999999999877543321 1111111335788887665433222111 2232 3344
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-----------HHHH---HHHHHHHcCCCHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-----------IVES---LFRRFTENGMNED 332 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-----------liea---~~~~~v~~Gl~~e 332 (434)
. +.++.+...-+|.++--. |.-- ++ +.=||+++- ++++ .|+.+.+.-++-+
T Consensus 137 G--~~~a~~~~~pif~~lA~g---------e~Gy-l~---~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D 201 (300)
T COG1023 137 G--DEEAVERLEPIFKALAPG---------EDGY-LY---CGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYD 201 (300)
T ss_pred C--cHHHHHHHHHHHHhhCcC---------cCcc-cc---ccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4 578999999999888532 1100 11 112344431 3333 5666666655544
Q ss_pred HH-HHHHHH-------HHHHHHHHHHHHhc-HHHHHHhcCCcchhhhhhh--hhc-cchhHH-HHHHHHHHhccCChhHH
Q 013877 333 LA-YKNTVE-------CITGIISKIISTQG-MLAVYNSFSGEDKKEFEKA--YSA-SYYPCM-EILYECYEDVAAGSEIR 399 (434)
Q Consensus 333 ~A-~~~~~e-------~l~Gli~~li~e~G-~~~m~~~vssp~~~eyg~~--~~~-~~~p~~-~~m~e~~~~v~~G~f~r 399 (434)
.. ..++|. -+..|.++.+.+.+ ++...+.|++-..-.|--. ... .-.|+. ..+.+-+.+-+.-.|++
T Consensus 202 ~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~ 281 (300)
T COG1023 202 LEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAG 281 (300)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhhHHH
Confidence 32 112221 12234555555544 3666666765433222111 111 125644 35556677778888999
Q ss_pred HHHHhcC
Q 013877 400 SVVLAGR 406 (434)
Q Consensus 400 ~~~~~~~ 406 (434)
+++.+-+
T Consensus 282 kvlaalR 288 (300)
T COG1023 282 KVLAALR 288 (300)
T ss_pred HHHHHHH
Confidence 8876544
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=78.83 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=124.8
Q ss_pred HcCccccCCCcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccch---hh-hhhcccccCCCCccEE
Q 013877 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVI 233 (434)
Q Consensus 159 ~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~---i~-~~~~~~i~~~~di~VI 233 (434)
+.|+.+ +.|-.|+++++|++|+-+|-.. +.+++++|.+++++|++|+.+.-++ +. .++. .=++|+.|.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 368876 6677899999999999999776 6899999999999999998665443 22 2222 226899999
Q ss_pred EeccCC-ChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhch
Q 013877 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA 312 (434)
Q Consensus 234 ~v~Pn~-pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~ 312 (434)
..||-+ |++. |+ .. ++ ..-++.++.+...+|++..|.. ++. ...|+.+..+-.|-.
T Consensus 199 S~HPaaVPgt~-------Gq-------~~-i~-egyAtEEqI~klveL~~sa~k~-ay~------~PA~lvspV~DMgS~ 255 (342)
T PRK00961 199 SYHPGAVPEMK-------GQ-------VY-IA-EGYADEEAVEKLYEIGKKARGN-AFK------MPANLIGPVCDMCSA 255 (342)
T ss_pred ccCCCCCCCCC-------Cc-------ee-cc-cccCCHHHHHHHHHHHHHhCCC-eee------cchhhcchhhhHHHH
Confidence 999933 2222 32 22 22 4467899999999999999975 111 122345454444444
Q ss_pred HHH----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 313 VHG----IVESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 313 ~~a----liea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+.+ .+..-++..+ -.|-|.+.+-..+.++|.. ++.|+.++|+.+|.+.+.
T Consensus 256 VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLn 310 (342)
T PRK00961 256 VTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALD 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcC
Confidence 444 3333444454 4599999999999999985 999999999999998886
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=91.02 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=89.3
Q ss_pred chhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC
Q 013877 91 EYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 91 e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~ 170 (434)
+.++|.++ ..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. ..
T Consensus 242 d~~~R~~~-------~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~ 301 (476)
T PTZ00075 242 DGIFRATD-------VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VV 301 (476)
T ss_pred HHHHHhcC-------CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----ec
Confidence 56666442 36889 9999999999999999999987 9998777654333 3345557876 45
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHH-HHHhcCCCCcEEEEeccchhhh-hhcccccCCCCccEEEeccCCChhh
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
+.+++++.+|+|++++.. ..++. +.+..||+|.+|+.++-+.... +.. +....++++..+.|+.....
T Consensus 302 ~leell~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 302 TLEDVVETADIFVTATGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred cHHHHHhcCCEEEECCCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 789999999999999753 44664 6788899999988554433111 110 11123577888888665444
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=81.37 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------------CC---CcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~~---~~~~~~E 174 (434)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+.. ..|..+- .+ ...+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 6999999999999999999999 99975 666655444333 2332210 00 1356788
Q ss_pred hhccCCEEEEeecch----------HHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 175 a~~~ADiViLavpd~----------a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+++++|++|+|+|.. ....+++.|.++++++++|++-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 899999999999832 1346777899999999988765533
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=84.01 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|+||||||+|.||..++++|.+. +.++++....+.+. +..+.+...|... +.+.+|++.++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 01345443344333 3333344445443 568888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 99888776544 344 4455544
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-05 Score=83.24 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=111.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-------cccc-----CC---CcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEE-----NG---TLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~-----~~---~~~~~~Ea 175 (434)
|+||+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+...+.+ .... ++ ...+..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 48999999999999999999877 2236775 4444443333322111 0000 00 13456788
Q ss_pred hccCCEEEEeec-ch--------------HHHHHHHHHHhcCCCCcEEEEec----cchhhhhhcccccCCCCcc-EEEe
Q 013877 176 ISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSMGLDFPKNIG-VIAV 235 (434)
Q Consensus 176 ~~~ADiViLavp-d~--------------a~~~vl~eI~~~Lk~g~iL~~s~----G~~i~~~~~~~i~~~~di~-VI~v 235 (434)
+++||+||+||| |. .+..+.++|.+++++|++|++-+ |..- .+......-..+.+ .+..
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f~v~~ 154 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINFQILS 154 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCeEEEE
Confidence 999999999996 22 23467778999999999876544 4321 11110000011223 3556
Q ss_pred ccC--CChhhHHHHHhhcccccCCCceEEE-eecCCCC-HHHHHHHHHHHHHhCC-Ccccccchhhhcccccccchhhhh
Q 013877 236 CPK--GMGPSVRRLYVQGKEINGAGINSSF-AVHQDVD-GRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGERGILL 310 (434)
Q Consensus 236 ~Pn--~pg~~vr~ly~~G~~~~G~Gv~ali-av~qdvs-g~a~e~a~~la~aiG~-~~~iettf~~E~~~Dlfge~tvL~ 310 (434)
.|- .||..+++.+. .+-++ .-..+.+ .++.+.+.++...+-. ..++.|+. ++.+.-.+ ..
T Consensus 155 ~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K~-----~e 219 (473)
T PLN02353 155 NPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSKL-----AA 219 (473)
T ss_pred CCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHHH-----HH
Confidence 662 34544433322 44433 2221222 4678888888887742 22333332 22222222 23
Q ss_pred chHH----HHHHHHHHHHHHcCCCHHHHHH
Q 013877 311 GAVH----GIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 311 G~~~----aliea~~~~~v~~Gl~~e~A~~ 336 (434)
++-- +++..+.+.+-+.|++..+...
T Consensus 220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~ 249 (473)
T PLN02353 220 NAFLAQRISSVNAMSALCEATGADVSQVSH 249 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3332 3667777777777777766544
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.6e-06 Score=82.13 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... .+.+.+++++++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665 34444344445555556421 15688999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
+.++..... +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988776653 4555 4444444
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.2e-06 Score=85.94 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+|+++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 3678 9999999999999999999988 9998876655433 4566778886 356788999999999988
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~ 215 (434)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44555 4778899999988665443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=8e-06 Score=81.97 Aligned_cols=94 Identities=22% Similarity=0.362 Sum_probs=72.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| +|++|||+|.+|.++++.|+.. |.+|++.+|+.. ..+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 34578 9999999999999999999988 888888877643 3566667776531 123567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+|+..+ -++....|+++.+|++.+
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEc
Confidence 986432 245667889999888664
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.2e-06 Score=83.82 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |+|+|||.| .||.++|.+|.+. |..|+++.+.. .++.+++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 36889 999999996 9999999999999 99998876531 257788999999999
Q ss_pred eecchHHH-HHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQA-DNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~g~iL~~s 211 (434)
+++..... ..+ +++|++|+++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDv 230 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDV 230 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEe
Confidence 99976543 222 8999988876
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=84.91 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3678 9999999999999999999988 9998887665444 3455566876 357889999999999998
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~ 215 (434)
.. ..++. +....||+|.+++.+..+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 64 33554 5778899999988776554
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=84.86 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=70.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
-+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+.. .+.+++++.+|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3678 9999999999999999999987 9898776554333 34667788863 46889999999999876
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..... +..+.+..||+|.+|+.+.-+
T Consensus 318 Gt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 65322 124677789999988855443
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-05 Score=66.17 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=61.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
||||||+|.+|..+...+++.. .+.++....+.+. +..+.++..|+.. ..+.+++++ +.|+|++++|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~----~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS----PDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT----TTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhcC----CCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCCc
Confidence 7999999999999999998761 1456544444444 3344566778874 778999988 789999999999
Q ss_pred HHHHHHHHHHh
Q 013877 190 AQADNYEKIFS 200 (434)
Q Consensus 190 a~~~vl~eI~~ 200 (434)
.+.++......
T Consensus 74 ~h~~~~~~~l~ 84 (120)
T PF01408_consen 74 SHAEIAKKALE 84 (120)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99988876544
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=70.88 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=71.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC----------cCCHHhhhccCCEEE
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----------~~~~~Ea~~~ADiVi 183 (434)
|+|||.|+||.-+|..|.+. |++|.+..|.. ..+.-++.|+...+.. ..+..+..+..|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99988777753 3444566677542111 111124577899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccchh
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i 216 (434)
+++|-.+..++++.+.+++.+++.| ++--|+..
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~ 106 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGN 106 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSH
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCc
Confidence 9999999999999999999998654 56678763
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.6e-05 Score=81.99 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=72.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.+|..+++.++.. |.+|++..+. +.....|...|+. ..+.+++++.+|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYE-----VMTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCE-----EccHHHHHcCCCEEEECC
Confidence 4678 9999999999999999999988 9888775544 4457788889986 346678899999999998
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecc
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G 213 (434)
... .++. +....|++|.+|+.+..
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCC
Confidence 753 3454 45788999998875543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=80.01 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=68.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+.+ ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 578 9999999999999999999986 5 4777788776666677777776421 0224667889999999999
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEEe
Q 013877 187 SDAAQADNYEKIFSCM-KPNSILGLS 211 (434)
Q Consensus 187 pd~a~~~vl~eI~~~L-k~g~iL~~s 211 (434)
|.....++++.+.... ..+.++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEe
Confidence 9776655555543322 245566655
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=72.77 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=73.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC--------cCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~--------~~~~~Ea~~~ADiVi 183 (434)
+||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 8777766664 22566666677542211 112335566899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
++++-.+..++++.+.|.+++.+.| .+--|..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g 105 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLG 105 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCc
Confidence 9999999999999999999999855 4566775
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0006 Score=69.12 Aligned_cols=206 Identities=13% Similarity=0.061 Sum_probs=128.9
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCch------h-----------HHHHHHcCccccC-------C--CcC--CHH
Q 013877 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------S-----------FAEARAAGFTEEN-------G--TLG--DIY 173 (434)
Q Consensus 122 mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~------s-----------~~~A~~~G~~~~~-------~--~~~--~~~ 173 (434)
||..+|..+..+ |++|++.+...+. . ++.+.+.|..... . ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999988 9999888766421 1 1122223322100 0 011 256
Q ss_pred hhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhh
Q 013877 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~ 250 (434)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.. ..+..-.++.+|+--|.+.++
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 8899999999999977775 58889999999999884 556666666654 222223789999977776631
Q ss_pred cccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCC
Q 013877 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (434)
Q Consensus 251 G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~ 330 (434)
.-- +..+...+.+.++.+..++..+|... +.. .+. +.+ ++......++.-++..+.+.|.+
T Consensus 147 --------lvE-Vv~g~~t~~e~~~~~~~ll~~lGk~~-v~v---~d~-----~Gf-i~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 147 --------LVE-VSPSDATDPAVVDRLAALLERIGKVP-VVC---GPS-----PGY-IVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCcE-EEe---cCC-----CCc-chHHHHHHHHHHHHHHHHhCCCC
Confidence 111 33456677899999999999999652 111 111 111 33344444555555666777899
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 013877 331 EDLAYKNTVECI------TGIISKIISTQGMLAVYNS 361 (434)
Q Consensus 331 ~e~A~~~~~e~l------~Gli~~li~e~G~~~m~~~ 361 (434)
+++......... .| .-+++-..|++.+++.
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~ 243 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYA 243 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHH
Confidence 988776443221 24 3555666676554443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.3e-05 Score=81.29 Aligned_cols=186 Identities=18% Similarity=0.197 Sum_probs=121.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC----ccccCCCcCCHHhh---hccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~Ea---~~~ADiViL 184 (434)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-++.+ +++ ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4699999999999999999999 9999999999887766666554 222 4566664 567788999
Q ss_pred eecchHH-HHHHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 185 avpd~a~-~~vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
.|+-... ..+++++.|+|.+|.+|++..--. +....+ .-.+++.||..--.+ |.|.--.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 9997543 468889999999999999875432 222211 224567777533322 11000011
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH-----------H---HHHHHHHHHH
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-----------G---IVESLFRRFT 325 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~-----------a---liea~~~~~v 325 (434)
|+ |-|.. +.++.+.+.-++..|-+.. ..++-.+..|+. |.+| + +|--.|+.+.
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk~------~g~pCc~~iG~~----GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk 205 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAKV------DGEPCCTWIGPD----GAGHFVKMVHNGIEYGDMQLIAEAYDILK 205 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhhc------CCCCceeeECCC----CCCceeeeeecCchHHHHHHHHHHHHHHH
Confidence 22 33343 5689999999999887641 123333344443 2222 1 5555777777
Q ss_pred H-cCCCHHHHH
Q 013877 326 E-NGMNEDLAY 335 (434)
Q Consensus 326 ~-~Gl~~e~A~ 335 (434)
. .|++.++--
T Consensus 206 ~~lgls~~ei~ 216 (473)
T COG0362 206 DGLGLSAEEIA 216 (473)
T ss_pred HhcCCCHHHHH
Confidence 6 799887643
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.1e-05 Score=66.99 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.4
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCchhHHHHHHcC-ccccCCCcCCHHhh-hccCCEEEEeecc
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg-~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea-~~~ADiViLavpd 188 (434)
||+||| .|.+|..++..|.+. .++++... .++.++....+...+ +....-...+..+. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 689999 489999999999884 15554433 222111111122222 11000000111111 2589999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999887767778999999998875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00048 Score=67.08 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=124.7
Q ss_pred HcCccccCCCcCCHHhhhccCCEEEEeecc-hHHHHHHHHHHhcCCCCcEEEEeccchhh-h---hhcccccCCCCccEE
Q 013877 159 AAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLG-H---LQSMGLDFPKNIGVI 233 (434)
Q Consensus 159 ~~G~~~~~~~~~~~~Ea~~~ADiViLavpd-~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-~---~~~~~i~~~~di~VI 233 (434)
+.|+.+ ..|-.|++++||+||.=+|- ..|.++++++.+.+++|++++.+.-+... + ++. .=+++.+|-
T Consensus 124 d~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed---~gredlnvt 196 (343)
T COG4074 124 DMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFED---MGREDLNVT 196 (343)
T ss_pred HceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHH---hCcccccee
Confidence 467765 56788999999999999884 45679999999999999999887655322 1 122 124789999
Q ss_pred EeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchH
Q 013877 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV 313 (434)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~ 313 (434)
..||-+ .+.+ .|-.+ |+ +.-++.++.+..-+|..-.-+. .+.. ...|.|-.+-.|..+
T Consensus 197 syhpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk~------pa~llgpvcdmcsav 254 (343)
T COG4074 197 SYHPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFKV------PAYLLGPVCDMCSAV 254 (343)
T ss_pred ccCCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-cccC------cHHhhchHHHHHHHH
Confidence 999944 3332 23333 44 6677888877766665433221 2222 223778888888888
Q ss_pred HHHHHHHH---HHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 314 HGIVESLF---RRFT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 314 ~aliea~~---~~~v--~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
.+++-++. +-++ -.|-|.+-|-..+.|.+.+ |++++.+.|++.|-+.+.
T Consensus 255 taivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeeald 308 (343)
T COG4074 255 TAIVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcC
Confidence 88666543 3333 3599999999999999996 999999999999998886
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=79.28 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---C--ccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||..+++.+.... ...+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCAT 197 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEee
Confidence 89999999999999998776520 0347888888766656655543 4 332 467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|.. ..++.. ..++||++|.
T Consensus 198 ~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 198 LST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred CCC--CCEecH--HHcCCCCEEE
Confidence 865 233321 4578898543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=77.15 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=59.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|+||| .|.||.++|.+|.+. |+.|.++..+. .+++|++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5889 9999999 999999999999998 99998874221 1356788999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++..... ++. ++++|++|+++
T Consensus 209 vg~~~~v---~~~--~lk~GavVIDv 229 (296)
T PRK14188 209 VGRPEMV---KGD--WIKPGATVIDV 229 (296)
T ss_pred cCChhhc---chh--eecCCCEEEEc
Confidence 9986642 221 28999988876
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.3e-05 Score=75.08 Aligned_cols=98 Identities=22% Similarity=0.256 Sum_probs=70.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCcccc-CCC--c----CCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~--~----~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.||.-+|..|.++ |.+|.+..|..+. .+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 6899999999999999999998 9988877775332 33332 3354321 111 0 01112235689999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEE-EEeccchh
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i 216 (434)
+++|-....++++.+.|++.++++| .+-.|+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 9999998899999999999998865 56678864
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.1e-05 Score=72.81 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=89.4
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++||+|||+ |.||..+++.+.+. .+++++...+.+.+........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 368999998 99999999988764 15666554544332222222334432 467888888899999999999
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHH--HHHhhcccccC-CCceEEEee
Q 013877 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING-AGINSSFAV 265 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~~~~G-~Gv~aliav 265 (434)
...++...... .|. +|+-..|++....+. .....+.+.++ ++||..-...- .+-+.--...| +-+- ++-.
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~~~~-l~~aa~~~~v~-~s~n~s~g~~~~~~l~~~aa~~l~~~d~e-i~E~ 145 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQLAE-LEEAAKKIPVV-IAPNFSIGVNLLMKLAEKAAKYLGDYDIE-IIEA 145 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhcCCCEE-EECcchHHHHHHHHHHHHHHHhcCCCCEE-EEEc
Confidence 98777765443 444 444456877543322 11122445544 56655433210 00000000011 1111 2233
Q ss_pred cC----C-CCHHHHHHHHHHHHHhC
Q 013877 266 HQ----D-VDGRATNVALGWSVALG 285 (434)
Q Consensus 266 ~q----d-vsg~a~e~a~~la~aiG 285 (434)
|. | .||.++.++..+....+
T Consensus 146 HH~~K~DaPSGTA~~l~~~i~~~~~ 170 (257)
T PRK00048 146 HHRHKVDAPSGTALKLAEAIAEARG 170 (257)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 33 2 37788888777777665
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.9e-05 Score=77.26 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
-+++||||+|.||..+++.|.... ...+|.+++|..++..+.+. +.|+.. ..+.+.+|++++||+|++|||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 378999999999999998887641 12377777776555444333 345321 115789999999999999998
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
... .++. ...++||+.|.-...+
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCC
Confidence 632 2222 2346899887655443
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.6e-05 Score=71.29 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiVi 183 (434)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 356889 9999999999999999999998 9998866554333333333435442 23445543 799998
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
.|..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.2e-05 Score=66.91 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=60.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcc-ccCCCcCCHHhhhccCCEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT-EENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~-~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+++ +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+-. ..--...+..+.+.++|+||
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 46788 9999999999999999999998 87 4889999877777777665211 00001445667889999999
Q ss_pred EeecchHH
Q 013877 184 LLISDAAQ 191 (434)
Q Consensus 184 Lavpd~a~ 191 (434)
.++|....
T Consensus 81 ~aT~~~~~ 88 (135)
T PF01488_consen 81 NATPSGMP 88 (135)
T ss_dssp E-SSTTST
T ss_pred EecCCCCc
Confidence 99997655
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.9e-05 Score=79.22 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=57.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.+.| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.|
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 3678 9999999999999999999987 87 788888876665667777664210 023566788999999999
Q ss_pred ecchH
Q 013877 186 ISDAA 190 (434)
Q Consensus 186 vpd~a 190 (434)
|+...
T Consensus 250 T~s~~ 254 (423)
T PRK00045 250 TGAPH 254 (423)
T ss_pred CCCCC
Confidence 98543
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00053 Score=71.53 Aligned_cols=151 Identities=20% Similarity=0.271 Sum_probs=93.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-------------------HHHHHHcCccccCCCcCCH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~~~~~~ 172 (434)
.+|+|||+|-+|.++|..+.++ |++| +|.+.+++. .+.+.+.|.-. .+.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7999999999999999999999 9987 476655422 23455555321 13455
Q ss_pred HhhhccCCEEEEeecchHH----------HHHHHHHHhcCCCCcEEEEe----ccch---hhh-hhc-ccccCCCCccEE
Q 013877 173 YETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLS----HGFL---LGH-LQS-MGLDFPKNIGVI 233 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~----------~~vl~eI~~~Lk~g~iL~~s----~G~~---i~~-~~~-~~i~~~~di~VI 233 (434)
+++ +.||++++|||...- ....+.|++.|++|++|++= .|.+ +.. ++. .++.++.|+. +
T Consensus 80 ~~l-~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~-l 157 (436)
T COG0677 80 EEL-KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY-L 157 (436)
T ss_pred hhc-ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee-E
Confidence 554 589999999984321 12344699999999987643 3432 112 222 4566665543 3
Q ss_pred Eecc--CCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 234 ~v~P--n~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
.-+| -.||...+++-. .+-+|. .++++..+.+.+|-..+=.
T Consensus 158 aysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~ 200 (436)
T COG0677 158 AYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVE 200 (436)
T ss_pred eeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheE
Confidence 3445 345665443332 333222 4567777777777766643
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0028 Score=65.04 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=71.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhh-cCCcEEEEEecCC---chhHHHHHH-----------cCcccc-C-CCcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEE-N-GTLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~-~~G~~Vivg~r~~---~~s~~~A~~-----------~G~~~~-~-~~~~~~~E 174 (434)
.||+|||.|+=|.++|+.+..+-.+. -+..+|..+.+.. .+.....+- -|+... + -.+.|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 78999999999999999988762221 1122455444321 110111110 011100 0 01568899
Q ss_pred hhccCCEEEEeecchHHHHHHHHHHhcCCCCcE-EEEeccchh
Q 013877 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~~i 216 (434)
++++||+++..+|.+-...++++|..+++++.. |+.+.||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999985 678888864
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00049 Score=67.29 Aligned_cols=213 Identities=12% Similarity=0.045 Sum_probs=132.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
..++|||.|..|.+.....-+- ++. .+ -..+++.+.|+. .+.. ..+.+...+-.+++|.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs-~i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CS-AISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--eh-hhhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5799999999999954433222 222 11 112344444443 3333 2345555566788898899
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhh-hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|..+.++.... .-+||++|.+++|++-. .+.. .-+.+.--..+||+.......+.-.+- .+--..|. .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 88666665433 34799999999999732 2211 001234446799999887766666543 23222222 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gl 345 (434)
. +.....+++.|+.-+|+....- .|..-.+||..... ++.+..+.--..+....+|+++-++.-+.+--+.|
T Consensus 146 a--D~~g~ai~q~la~emgg~~f~V----~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g- 218 (289)
T COG5495 146 A--DDVGYAIVQSLALEMGGEPFCV----REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG- 218 (289)
T ss_pred c--cccccHHHHHHHHHhCCCceee----chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH-
Confidence 3 3345677899999999974221 24445589888765 55555666667788899999998888875555666
Q ss_pred HHHHHHHhcHH
Q 013877 346 ISKIISTQGML 356 (434)
Q Consensus 346 i~~li~e~G~~ 356 (434)
..+-..+.|..
T Consensus 219 ~~~n~~qrg~a 229 (289)
T COG5495 219 ALENTLQRGQA 229 (289)
T ss_pred HHHHHHHhhhh
Confidence 55666666653
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=73.13 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=59.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|+|||. |.||.++|..|.+. |..|+++.. + +.++++.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEEe
Confidence 5889 99999999 99999999999998 998877621 1 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.....+ . .++++|++++++
T Consensus 209 vg~~~~v~---~--~~ik~GavVIDv 229 (284)
T PRK14179 209 IGRGHFVT---K--EFVKEGAVVIDV 229 (284)
T ss_pred cCccccCC---H--HHccCCcEEEEe
Confidence 99766531 1 138999988876
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00028 Score=69.71 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=56.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--cCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
|+||||||+|.||..+++.|.+. .++++......+....+.... .+... +.+++++..+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999999865 034443333222211111121 23332 45777774569999999999
Q ss_pred hHHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
..+.++...+. +.|+ +++.+.|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 98877766553 4454 4444444
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=63.53 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH---HHHH-----HcCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|+|+ |.||..+++.+.+. .++++..+.++..... +... ..|+.. ..+.+++++.+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 48999999 99999999999984 1777655554432100 0111 223332 46789999999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCc-EEEEeccchh
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i 216 (434)
|-.+-|....+.++....+ |. +|+=+.|++-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999888877777665444 43 5566789874
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00044 Score=67.56 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=100.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccc-c-------C-----
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTE-E-------N----- 166 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~-~-------~----- 166 (434)
++.|+|||.|.||..+|+--..+ |++|++.+++ .+...+|.+ .+... + +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999998 9998877654 333333332 11110 0 0
Q ss_pred -CCcCCHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChh
Q 013877 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 167 -~~~~~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
.+..++.+++++||+||=++-...- .+++++|-..-++.+++. -.+.+.+..+.. .....-.|...|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1245678899999999866553333 246666666667777764 556677665543 222334667777666666
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
++. +.+ +.-+.+.|.+-......+..++|.+
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 642 222 1236678889899899999999975
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=72.26 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++|+|||+|.||..++..+... .++ +|.+++|..++..+.+.+. ++.. .+.+.+++++++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~---~~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTA---EPLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCee---EECCHHHHhhcCCEEEEccC
Confidence 8999999999999999999753 044 6778888766655555554 3322 03578899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
... .++. ..++||+.|.-...+
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAF 219 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCC
Confidence 654 3333 247899877655444
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00015 Score=76.21 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.+...|.... ...+..+++.++|+||.|
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 4678 9999999999999999999988 8 5788888876655566666654210 123567888999999999
Q ss_pred ecchHH
Q 013877 186 ISDAAQ 191 (434)
Q Consensus 186 vpd~a~ 191 (434)
++....
T Consensus 248 T~s~~~ 253 (417)
T TIGR01035 248 TGAPHP 253 (417)
T ss_pred CCCCCc
Confidence 975443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00063 Score=67.33 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCchh--HHHHHH-----cCccccCCCcCCHHhhhccCCE
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r-~~~~s--~~~A~~-----~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
|.||+||| +|.||..+++.+.+. .+++++...+ .++.. ...+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 36899999 699999999999864 1677655454 32221 122222 23332 4577777567899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCC--CccEEEeccCCChhh
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPK--NIGVIAVCPKGMGPS 243 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~--di~VI~v~Pn~pg~~ 243 (434)
|+.++||..+.+++..... .|. +|+-..|++....+. ....-+ ++. +.+.||++--+
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~-l~~aA~~~g~~-v~~a~NfSlGv 131 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQE-LADLAEKAGIA-AVIAPNFSIGV 131 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHH-HHHHHhcCCcc-EEEECcccHHH
Confidence 9999999998887766543 343 555556886543322 011111 233 44777776544
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00093 Score=66.78 Aligned_cols=69 Identities=25% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--cCcccc--CCC---cCCHHhhhccCCEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NGT---LGDIYETISGSDLV 182 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~~~---~~~~~Ea~~~ADiV 182 (434)
|+||+|||.|+||..+|..+... |+ +|++.+...+.....+.+ ...... +.. ..+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999999877 65 777766543332222211 111100 000 2344 568999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00039 Score=71.21 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=68.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+...++|||+|.|+..|++.++.- +++ +|.|+.|..+...+.+. +.+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 244 67788887655554443 233210 12367889999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
||... .++. ...|+||+.|.-+.+.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99877 3332 2457899988766554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00024 Score=76.85 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEEe
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+.+ ++|+|||.|.||..++++|... |. +|++.+|+..+....+...+ ....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999988 86 68888887666666665542 211000134567889999999999
Q ss_pred ecchH---HHHHHHHHH
Q 013877 186 ISDAA---QADNYEKIF 199 (434)
Q Consensus 186 vpd~a---~~~vl~eI~ 199 (434)
|+-.. ..+.++.+.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 86322 245555543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00064 Score=70.43 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=64.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-C-CCcCCHHhhhccCCEEEEe
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~~~~~~~Ea~~~ADiViLa 185 (434)
+.+ .+|.|||+|.+|...++.++.. |.+|++.++...+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 98888777654443333333343110 0 0012356788999999999
Q ss_pred ecc--hHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd--~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2222333 45556789999888664
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00038 Score=70.62 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=63.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.||
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 88999999999999998876431 44 677777765555544442 24321 01467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|.. + .++. ..+++|+.|.-...+
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCC
Confidence 965 2 3443 567999987755444
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00031 Score=70.81 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEe
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-++++|||+|.||..+++.+..- +.+ +|.++.|..++..+.+.+ .|+.. ..+.+.+|++++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38999999999999999998864 144 778888876655554443 24321 0156899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+... .+++ ...++||+.|.-...+
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCC
Confidence 99543 3332 2357888776654443
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00034 Score=72.06 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhccCCEEEEe
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+-++++|||+|.|+..+++.+..-. .+ +|.++.|..++..+.+.+. |+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 3378999999999999998887641 34 7888888755544433322 3321 0156899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+......+++. ..++||+.|.-...+
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVGGD 227 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecCCC
Confidence 975432233431 357899877655444
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00046 Score=70.54 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+..+++.+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 156765434443211 1222234332 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEE
Q 013877 192 ADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~ 209 (434)
.+.... .|+.|.-++
T Consensus 74 ~~~~~~---~L~aG~NVV 88 (324)
T TIGR01921 74 IPEQAP---YFAQFANTV 88 (324)
T ss_pred HHHHHH---HHHcCCCEE
Confidence 544433 344444333
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=64.57 Aligned_cols=92 Identities=26% Similarity=0.302 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.+|||||||.+|..+..-+++-- -+++. .++++..++....+...+-.. +.+++|.+++.|+|+=|-++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~----~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR----VDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC----cceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 47999999999999998887630 12443 444444344333333333332 5789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~ 214 (434)
..+...++. +.|. +|+.+-|.
T Consensus 73 v~e~~~~~L---~~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKIL---KAGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHH---hcCCCEEEEechh
Confidence 998887764 3443 56666664
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00043 Score=64.58 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----Ccccc--C-CCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE--N-GTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~--~-~~~~~~~Ea~~~ 178 (434)
.+++ +++.|+|. |.+|.++++.|.+. |.+|++..|+..+..+.+... +.... + ....+..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5678 99999996 99999999999988 888887777644433333322 11100 0 001223478889
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+||.++|..... ........+++.++++.
T Consensus 98 ~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLAWAPKPLAVAADV 128 (194)
T ss_pred CCEEEECCCCCcee--chhhhcccCceeEEEEc
Confidence 99999999977751 11222234556677765
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0006 Score=59.25 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEE-EecCC--chhHHHHHH--cCccccCCCcC-CHHhhhccCCEEEEe
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~~~~~~-~~~Ea~~~ADiViLa 185 (434)
||+||| .|.+|..+.+.|.+. ..++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1344333 33332 122322211 01110 0011 123456899999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888776 4578788887764
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00039 Score=73.23 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+.| ++|.|||.|-||.+++.+|.+. |. ++++.+|+..+....+.+.+ ... -...+..+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 34677 9999999999999999999988 86 78888998777777777654 221 00234567889999999
Q ss_pred Eeecch
Q 013877 184 LLISDA 189 (434)
Q Consensus 184 Lavpd~ 189 (434)
.||+..
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 999853
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=67.90 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH-HHHHHcCccc-----------cCC---CcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTE-----------ENG---TLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~-----------~~~---~~~~~~Ea 175 (434)
|.||||+|+|.||..+++.+.+. .+++++...+...... ..++..|+.. .+. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999998864 1567655555433222 2233334320 000 02356677
Q ss_pred hccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..++|+|+.|+|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999999888777643 4457778877773
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00061 Score=69.25 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||..+++++... .++ .|.+++|..++..+.+.+ .|+.. ..+.+.+++++ +|+|++||
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 145 455566654443333333 24321 01457888887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|... .+++ ...+++|+.|.-...+
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3332 2346899887655443
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=65.88 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH---cCcccc-CC---CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEE-NG---TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~-~~---~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.||..+|..|... |+ +|++.+.........+.+ .+.... .. ...+.++ +++||+||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEE
Confidence 6899999999999999999887 76 776665533221112110 010000 00 1246665 78999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.+
T Consensus 75 itag 78 (305)
T TIGR01763 75 ITAG 78 (305)
T ss_pred EcCC
Confidence 9988
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00093 Score=66.62 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=61.3
Q ss_pred CEEEEEcccchH-HHHHHHHHhhhhhhcCC--cEE-EEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEe
Q 013877 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG-~A~A~nLrds~~~~~~G--~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLa 185 (434)
.||||||+|.++ ..++..+++. + +.+ .+.++..++..+.+++.|+.. ...+.++++++ -|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999665 5688888876 4 233 333455556677888888741 16789998886 5999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+..+.++... .|+.|+-|.
T Consensus 75 tp~~~H~e~~~~---AL~aGkhVl 95 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHVL 95 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEEE
Confidence 999999987743 345566443
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00058 Score=68.29 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccc---cCCCcCCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~---~~~~~~~~~Ea~~~ADiV 182 (434)
.+++ ++|.|||.|-+|.+++..|.+. |. +|.+.+|...+..+.+...+-.. .-....+..+.++++|+|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEE
Confidence 3567 8999999999999999999988 87 78888887666666655432100 000022345577889999
Q ss_pred EEeecchH
Q 013877 183 LLLISDAA 190 (434)
Q Consensus 183 iLavpd~a 190 (434)
|.+||...
T Consensus 197 InaTp~Gm 204 (284)
T PRK12549 197 VHATPTGM 204 (284)
T ss_pred EECCcCCC
Confidence 99999654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00064 Score=71.52 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=61.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|+-++..+.|.+.|... -+..+..+.+.++|+||.+
T Consensus 175 ~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISS 245 (414)
T ss_pred cccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEe
Confidence 4788 9999999999999999999999 85 88899999888899999998542 1244667889999999999
Q ss_pred ec
Q 013877 186 IS 187 (434)
Q Consensus 186 vp 187 (434)
|.
T Consensus 246 Ts 247 (414)
T COG0373 246 TS 247 (414)
T ss_pred cC
Confidence 86
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00083 Score=68.27 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+-++++|||+|.||..+++.+..- +.+ +|.|++|..++..+.+. +.|+... .+.+.++++++||+|+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEe
Confidence 348999999999999999998764 133 78888887665544333 2244321 146789999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+... .+++ ...++||+.|.-...+
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCC
Confidence 98543 3442 2357899887655444
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=63.49 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch--hHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~--s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.+|||||+|++|.-++.++.+. .++++....+.+.. .++.+++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 14555433333332 346777888753 1346777775 5788999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEec
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+..+.+...... +.|+.+++-.
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECC
Confidence 999988776543 4576665443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00053 Score=67.60 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=60.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---CccccCCCcCCHHh-hhccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~E-a~~~ADiVi 183 (434)
.++ +++.|||.|.+|.+++..|.+. |.+|.+.+|...+..+.+... |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999988 888888888755544444432 2111 122322 345799999
Q ss_pred EeecchHHHHHHH-HH-HhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~-eI-~~~Lk~g~iL~~s 211 (434)
.++|.....++-+ .+ ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754321100 00 2335677666654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=64.22 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhhc-----cCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~~-----~ADiViL 184 (434)
.||||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888865 1455544333333 3346678888753 1356788874 5899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|...+.+...... +.|+.+++...
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999999988876654 45777766544
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=67.53 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++++|||+|.||..+++.|... .++ +|.|++|..++..+.+.+. |+.. ..+.+.++++++||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 154 6778888766655555543 4422 01457889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|... .++. ...+++|+.|...
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEee
Confidence 9643 2332 1347888876633
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=60.97 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=57.0
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~m-G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..|+| ++|.|||.|-| |..++++|... |.+|.+.+|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 46788 99999999987 88899999998 88887777641 245678999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++-.. ++.. ..++++.+|++.
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDl 115 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDV 115 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEc
Confidence 999754 2321 135677777755
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00071 Score=69.72 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=112.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-H-cCccccCCCcCCHHhhh---ccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~-~G~~~~~~~~~~~~Ea~---~~ADiViLav 186 (434)
..||.||++.||+.+++|+.+. |+.|.+++|..++.-+... + .|...- ...+++|.+ ++--.||+++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 9999999998775433222 1 232210 135677764 5678999999
Q ss_pred cchHHHH-HHHHHHhcCCCCcEEEEeccch----hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 187 SDAAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 187 pd~a~~~-vl~eI~~~Lk~g~iL~~s~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
+....++ +++++.|+|.+|.+|++-.--. ....++ .-.+++=+|..--.+ |.|..-.| |+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~G-PS 143 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYG-PS 143 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccC-Cc
Confidence 9877764 6678999999999988653211 111110 001222233211111 11000011 22
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhh--hhchHH--------HHHHHHHHHHHH-cCCC
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI--LLGAVH--------GIVESLFRRFTE-NGMN 330 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tv--L~G~~~--------aliea~~~~~v~-~Gl~ 330 (434)
+-|.. +.+++..++.++..|-.. +-. -|+--+..|+.+. ..=++| .+|--.|+.+.. .|++
T Consensus 144 -lMpGg--~~~Awp~ik~ifq~iaak-v~~----~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls 215 (487)
T KOG2653|consen 144 -LMPGG--SKEAWPHIKDIFQKIAAK-VSD----GEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLS 215 (487)
T ss_pred -cCCCC--ChHHHHHHHHHHHHHHHH-hcC----CCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCc
Confidence 22333 567888888888887321 111 1444455555421 011222 166668888887 7888
Q ss_pred HHHHH
Q 013877 331 EDLAY 335 (434)
Q Consensus 331 ~e~A~ 335 (434)
.++--
T Consensus 216 ~~eia 220 (487)
T KOG2653|consen 216 NDEIA 220 (487)
T ss_pred HHHHH
Confidence 77643
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0012 Score=68.11 Aligned_cols=94 Identities=24% Similarity=0.269 Sum_probs=73.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
-+.| |++.|.|||-.|...|+.++.. |-+|+|..-.+-+ .-+|.-+||. +..++|+++.+|++|.+|
T Consensus 206 liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~T 272 (420)
T COG0499 206 LLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTAT 272 (420)
T ss_pred eecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEcc
Confidence 4667 9999999999999999999987 8899887554333 4456668998 578999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
-...+.. .+.+..||+|++|.-+.-|.
T Consensus 273 GnkdVi~--~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 273 GNKDVIR--KEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred CCcCccC--HHHHHhccCCeEEecccccc
Confidence 8755432 14566789999888665565
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.003 Score=61.24 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=61.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC----chh-------HHHHHHcCccccCCCcCCH
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~~~~~~~~ 172 (434)
.+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ .+. .+.++..+... ...+.
T Consensus 22 ~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~l 91 (226)
T cd05311 22 KIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGTL 91 (226)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCCH
Confidence 5778 9999999999999999999988 86 477788762 221 23444432211 01367
Q ss_pred HhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.++++++|+||-++|+.... +++...|.++.+|.+
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ 126 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFA 126 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEE
Confidence 78889999999999865543 233344556666553
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=63.41 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=46.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|.+|.++|..|... |+ ++++.++..++....+.+. +... .....+. +.+++||+|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i~~~~~-~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPV-KIKAGDY-SDCKDADIV 72 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EEEcCCH-HHhCCCCEE
Confidence 5899999999999999999988 74 6777776555443333321 1100 0012333 457899999
Q ss_pred EEeecc
Q 013877 183 LLLISD 188 (434)
Q Consensus 183 iLavpd 188 (434)
|+++..
T Consensus 73 Iitag~ 78 (306)
T cd05291 73 VITAGA 78 (306)
T ss_pred EEccCC
Confidence 999875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=54.87 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=56.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd~ 189 (434)
.+|.|+|+|+.|.+++.++.+. . |+.+....+.+++..-. .-.|+.. ..++.++.+. .|+-++++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 6899999999999999777655 2 54443333333321111 1125543 3377777766 99999999999
Q ss_pred HHHHHHHHHHh-cCCCCcEEEEecc
Q 013877 190 AQADNYEKIFS-CMKPNSILGLSHG 213 (434)
Q Consensus 190 a~~~vl~eI~~-~Lk~g~iL~~s~G 213 (434)
...++..++.. .+|. ++.++.|
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~~ 96 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTPG 96 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESSS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCCC
Confidence 98888877543 3432 5556543
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=66.97 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++++|||+|.||..+++.+..-. ++ +|.|+.|+.++..+.+.. .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 378999999999999999998751 44 777888875444333332 23332 12568999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|......+++ ...++||+.|.-....
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCC
Confidence 9665212232 2357888877654433
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0023 Score=67.02 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcC---c--cccCC-CcCCHHhhhccCCEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENG-TLGDIYETISGSDLVL 183 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~~~-~~~~~~Ea~~~ADiVi 183 (434)
|++|.|||+|.+|.+.|..|.++ | .+|.+..|+.++ .+++.+.. + ...|- ......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 58999999999999999999988 6 799999887554 34443332 1 11010 0123557899999999
Q ss_pred EeecchHHHHHHH
Q 013877 184 LLISDAAQADNYE 196 (434)
Q Consensus 184 Lavpd~a~~~vl~ 196 (434)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0035 Score=54.60 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=56.3
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG----~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 9887544333211 145553 5678874478999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+....++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987654 344455555433
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0047 Score=61.61 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViLavpd~a 190 (434)
+||||||||.||..++..|.+.. ..++++...+++.....+.. ...... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999986530 00245444444433222222 122332 6788885 688999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~ 214 (434)
..+....+. +.|. +++.+-|.
T Consensus 75 v~e~~~~iL---~~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCL---TAGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHH---hcCCCEEEEChhH
Confidence 888777654 3344 55566564
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0037 Score=64.13 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-cccc-CCCcCCHH-hhhccCCEEEEee
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~~~~~~~-Ea~~~ADiViLav 186 (434)
|+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999997 99999999999865 14565443433222112222222 1100 00122222 2457899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+..+.++..++.. .|..|++.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888877643 5787777665
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=65.82 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||.+++..+.... ++ +|.+++|..++..+.+.+. |+.. ....+.++++.++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 44 6777888766555555432 4431 11467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
|... .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 33322 23678876643
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0097 Score=50.37 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=60.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeecch
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISDA 189 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavpd~ 189 (434)
|-|+|+|.+|..+++.|++. +.+|++.. .+....+.+++.|+..-.+...+.+ .-+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87776554 4455678888888654323233332 2367899999999987
Q ss_pred HHHHHHHH-HHhcCCCCcEEEEecc
Q 013877 190 AQADNYEK-IFSCMKPNSILGLSHG 213 (434)
Q Consensus 190 a~~~vl~e-I~~~Lk~g~iL~~s~G 213 (434)
...-.+-. +........++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 66533333 3333333445555543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0024 Score=66.58 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc-----Cc---cccCCCcCCHHhhhccC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~---~~~~~~~~~~~Ea~~~A 179 (434)
++-++++|||+|.|+..+++.+..-. ..+ +|.|+.|..++..+.+.+. |+ .+ +.+.+|++++|
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~A 224 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGS 224 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCC
Confidence 34489999999999999999987641 024 6778888765544444322 32 22 57899999999
Q ss_pred CEEEEeecchHH----HHHHHHHHhcCCCCcEEE
Q 013877 180 DLVLLLISDAAQ----ADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 180 DiViLavpd~a~----~~vl~eI~~~Lk~g~iL~ 209 (434)
|+|+.||+.... ..+++ ...++||+.|.
T Consensus 225 DIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 225 DIVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred CEEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 999999974321 12332 23578998765
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=68.77 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=52.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+++ ++++|||.|.+|.+++..|.+. |.+|++.+|...+..+.+...+.... ...+.. .+.++|+||+|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4567 8999999999999999999998 98888887765444444444332210 011222 256899999999
Q ss_pred cchH
Q 013877 187 SDAA 190 (434)
Q Consensus 187 pd~a 190 (434)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0047 Score=62.72 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=44.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--c-----CccccCCCcCCHHhhhccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----GFTEENGTLGDIYETISGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~-----G~~~~~~~~~~~~Ea~~~A 179 (434)
.+. +||+|||.|++|.+++..+... |+ ++++.+...+.....+.+ + +....-....+.+ ++++|
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCC
Confidence 455 8999999999999999998887 74 665555543322222221 1 1100000023555 78999
Q ss_pred CEEEEee
Q 013877 180 DLVLLLI 186 (434)
Q Consensus 180 DiViLav 186 (434)
|+|+++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999998
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0054 Score=59.35 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCC---HHhh-hccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~Ea-~~~ADiViLav 186 (434)
|+|.|||+|..|.++|+.|.+. |++|++.++..++..+.+. +.+...-.+...+ +.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9998776665444333222 2333211111122 4455 78899999999
Q ss_pred cchHHHHHHHHHHh
Q 013877 187 SDAAQADNYEKIFS 200 (434)
Q Consensus 187 pd~a~~~vl~eI~~ 200 (434)
....+.-++-.+..
T Consensus 75 ~~d~~N~i~~~la~ 88 (225)
T COG0569 75 GNDEVNSVLALLAL 88 (225)
T ss_pred CCCHHHHHHHHHHH
Confidence 99888877766543
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0022 Score=63.57 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCc-CCHHhhhccCCEEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~Ea~~~ADiViL 184 (434)
.+++ +++.|||.|-+|.+++..|.+. | .+|++.+|+..+..+.+...+... .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 9999999999999999999988 8 488888887655555554433110 0001 133467788999999
Q ss_pred eecchHH
Q 013877 185 LISDAAQ 191 (434)
Q Consensus 185 avpd~a~ 191 (434)
++|....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0028 Score=63.81 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.|+| ++|.|||.|. +|..+|.-|.+. |..|++..++. .+..+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 36899 9999999988 999999999988 88888776531 246788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-... +.. .++++|++|++.+
T Consensus 208 Avg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 9986432 322 3478998888663
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0049 Score=64.52 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------------CC---CcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~~---~~~~~~E 174 (434)
|||+|||.|-.|...+..|.+. |++|+ +.+.++...+. ...|..+- ++ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv-~vDid~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVV-CVDIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEE-EEeCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 6899999999999999999998 99875 55554432222 22232111 11 1467889
Q ss_pred hhccCCEEEEeecchH---------H-HHHHHHHHhcCCCCcEEE
Q 013877 175 TISGSDLVLLLISDAA---------Q-ADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 175 a~~~ADiViLavpd~a---------~-~~vl~eI~~~Lk~g~iL~ 209 (434)
+++++|++|||||... + ..+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 9999999999998322 2 246668999997766654
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0026 Score=64.04 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~m-G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| ++|.|||.|.. |..++.-|... |..|++.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 5789 99999999988 99999999988 8888764321 24677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++-.. ++.. .++|+|++|+++
T Consensus 209 vG~~~---~i~~--~~ik~gavVIDV 229 (285)
T PRK14189 209 VGKRN---VLTA--DMVKPGATVIDV 229 (285)
T ss_pred CCCcC---ccCH--HHcCCCCEEEEc
Confidence 99433 3332 568999988765
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.026 Score=55.10 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=62.0
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC--C--------CcCCHHhhhccCCEEEEeecchH
Q 013877 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 121 ~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.||..+|..|.++ |++|.+..|. +..+..++.|+...+ + ...++++ ....|+||+++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3789999999998 9998887774 334445556753211 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-Eeccch
Q 013877 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~-~s~G~~ 215 (434)
..++++.+.+++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999999887654 556775
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0054 Score=55.14 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=45.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ccccC-CCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN-GTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~-~~~~~~~Ea~~~ADiVi 183 (434)
+||+|||. |+.|.++|..|... ++ ++.+.++...+....+.+.- +...+ ....+..+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEE
Confidence 58999999 99999999999988 65 66655555333333333210 10000 00124567889999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.-
T Consensus 75 itag 78 (141)
T PF00056_consen 75 ITAG 78 (141)
T ss_dssp ETTS
T ss_pred Eecc
Confidence 9863
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0073 Score=61.38 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=51.0
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+|.+|. .++..+... .+++++...+.+.+. .+... +... ..+.+|+++ +-|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466777654 156665444443321 12223 2222 568899986 5799999999
Q ss_pred chHHHHHHHHH
Q 013877 188 DAAQADNYEKI 198 (434)
Q Consensus 188 d~a~~~vl~eI 198 (434)
+..+.++....
T Consensus 74 ~~~H~~~~~~a 84 (346)
T PRK11579 74 NDTHFPLAKAA 84 (346)
T ss_pred cHHHHHHHHHH
Confidence 99998877654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0065 Score=63.33 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=53.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcCC---HHhh-hccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~---~~Ea-~~~ADiViLav 186 (434)
|+|.|||+|.+|.++++.|++. |++|++..+.. ...+.+++ .|+....+...+ .+++ ++++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE-ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 99887665543 33444443 443221111112 3445 78999999999
Q ss_pred cchHHHHHHHH
Q 013877 187 SDAAQADNYEK 197 (434)
Q Consensus 187 pd~a~~~vl~e 197 (434)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98776554433
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0068 Score=61.76 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchh----HHHHHHc---C--ccccCCCcCCHHhhhcc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARAA---G--FTEENGTLGDIYETISG 178 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s----~~~A~~~---G--~~~~~~~~~~~~Ea~~~ 178 (434)
+. +||+|||.|+||.++|..+... |+ ++++.+...+.. .+..... + .... ...+. +++++
T Consensus 5 ~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~ 74 (321)
T PTZ00082 5 KR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAG 74 (321)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCC
Confidence 44 7999999999999999998877 76 755555443321 2111111 1 1110 12455 57899
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+||++.
T Consensus 75 aDiVI~ta 82 (321)
T PTZ00082 75 SDVVIVTA 82 (321)
T ss_pred CCEEEECC
Confidence 99999966
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0057 Score=50.09 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..+++ ++++|+|+|.||.+++..|.+. +. ++.+++| |+++.
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34677 9999999999999999999987 53 5555544 99999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++...... ++....++++.+|.+.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998654432 2233456788777653
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0062 Score=61.45 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--Ccccc---CCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~~---~~~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|.+|.++|..|... |+ ++.+.++...+....+.+. ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 4899999999999999999988 84 6666665433222222221 11000 0001333 56899999999
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9885
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.008 Score=57.30 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .. .++-+.++|+||.+
T Consensus 7 ~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~-~~~~l~~adlViaa 77 (202)
T PRK06718 7 DLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EF-EPSDIVDAFLVIAA 77 (202)
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CC-ChhhcCCceEEEEc
Confidence 5889 9999999999999999999998 8888776654323322222333 221000 11 13457889999999
Q ss_pred ecchHHHHHHHHHH
Q 013877 186 ISDAAQADNYEKIF 199 (434)
Q Consensus 186 vpd~a~~~vl~eI~ 199 (434)
|.+...-..+.+..
T Consensus 78 T~d~elN~~i~~~a 91 (202)
T PRK06718 78 TNDPRVNEQVKEDL 91 (202)
T ss_pred CCCHHHHHHHHHHH
Confidence 99988876555443
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0038 Score=62.33 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=55.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCc---CCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~Ea~~~ADiV 182 (434)
.+++ +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+...+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 3677 9999999999999999999988 87 7888898866666666554321000001 1233556789999
Q ss_pred EEeecchH
Q 013877 183 LLLISDAA 190 (434)
Q Consensus 183 iLavpd~a 190 (434)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0068 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.7
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
++|+|||. |+.|.-+.++|++. |+ +|+ ...+... .-.|... ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 553 3332211 2256664 56788887788999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+|+....++++++.. ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998665 34455788898885
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.068 Score=52.70 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=123.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCcccc----------CCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------~~~~~~ 171 (434)
.||+|+|-|.+|+++|.-+..+ |++|..++-..+ +..++.++.|.... -+++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 999877664322 12223333443211 123568
Q ss_pred HHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEEEec-cchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~~s~-G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
++|++++|=.|-=|+|....- .+|+.+-..+.|..+|.-+. -|-...+-. + +-..-.++-+||--|-.-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCccc----
Confidence 999999998888899966653 57776666666766664332 232211111 1 1123467889995554331
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhccc-ccccchhhhhchHHHHHHH------HH
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVES------LF 321 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~-Dlfge~tvL~G~~~aliea------~~ 321 (434)
. ..- +.++.-.+.+..+.+.+|...+|-..+ +.+.|..- .+=-.|-++|+=.-.++.+ -.
T Consensus 151 -P--------LvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 -P--------LVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred -c--------hhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 0 111 335556678999999999999995311 11112100 0000111121111112222 35
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 013877 322 RRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
|.-..+|+-|-+||.-.+||++
T Consensus 218 D~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred HHHHhcCCCcchhcccchhhhh
Confidence 6777899999999998888887
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0087 Score=61.16 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
-||||||+|.++. .++..+.... .+++++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999764 4555553320 04565444444333344455555321 1468999986 57999999999
Q ss_pred hHHHHHHHHH
Q 013877 189 AAQADNYEKI 198 (434)
Q Consensus 189 ~a~~~vl~eI 198 (434)
..+.++..+.
T Consensus 75 ~~H~~~~~~a 84 (344)
T PRK10206 75 DSHFEYAKRA 84 (344)
T ss_pred hHHHHHHHHH
Confidence 9998877654
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0099 Score=59.49 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=40.5
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH---HcC-ccccCC---CcCCHHhhhccCCEEEEe
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG-FTEENG---TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G-~~~~~~---~~~~~~Ea~~~ADiViLa 185 (434)
|+|||.|.||..+|..|... |+ +|++.+...+.....+. ... ...... ...+ .+.+++||+||++
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence 68999999999999999877 66 77766654332111111 111 000000 0234 4568999999997
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
.
T Consensus 74 ~ 74 (300)
T cd01339 74 A 74 (300)
T ss_pred c
Confidence 7
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0064 Score=61.08 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=57.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 36889 9999999997 999999999988 8888777652 1245566789999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++... .+. .+.+++|++|+++
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDv 230 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDA 230 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEE
Confidence 996322 232 2457899988765
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=56.36 Aligned_cols=105 Identities=12% Similarity=0.234 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHH--HhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nL--rds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.++.|||+|++|+|++..- .+. |++++..++.++...-.-. .++.+. ...++++.++ +.|+.+||||
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 7899999999999998532 234 7788777776554221111 123221 1345666676 6899999999
Q ss_pred chHHHHHHHHHHh-cCCCCcEEEEeccchhhhhhcccccCCCCccEEEec
Q 013877 188 DAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 188 d~a~~~vl~eI~~-~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~ 236 (434)
-....++.+.+.. .+| .+|-|+.. + +..|+++.|.-+.
T Consensus 156 a~~AQ~vad~Lv~aGVk--GIlNFtPv----~-----l~~pe~V~V~~iD 194 (211)
T COG2344 156 AEHAQEVADRLVKAGVK--GILNFTPV----R-----LQVPEGVIVENID 194 (211)
T ss_pred HHHHHHHHHHHHHcCCc--eEEeccce----E-----ecCCCCcEEEEee
Confidence 8777777776433 332 25555543 1 2556666655443
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0068 Score=61.81 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCCcCCHHhhhccCCEEEEe--ec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLL--IS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~~~~~~Ea~~~ADiViLa--vp 187 (434)
-||.|||.|-.|..-|+-...- |-+|.+.+.+..+....-...+.... -.+..+++|++.++|+||-+ +|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999887766544 77898887764443333222333210 11234578999999999965 45
Q ss_pred chHHHH-HHHHHHhcCCCCcEEEEec
Q 013877 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~-vl~eI~~~Lk~g~iL~~s~ 212 (434)
-...+. +.+++...||||++|++++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 555555 4457888999999998764
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=60.41 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=57.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCcccc--CCCc--CCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--~~~~--~~~~Ea~~~ADiViLa 185 (434)
+||+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +-.+ .+.++.++++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 48999998 99999999999864 134554 222221111111111221000 0001 2455666689999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|.....++..++.. .|..|++.++
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~ 100 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSA 100 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCCh
Confidence 999998888877643 5777776665
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.031 Score=50.45 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=67.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~~ADiViLavp 187 (434)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... ++-.....+.-+++|+|.-.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 889999999 899999999988 99875 55666667788888776322 2222334577899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777766667777665554444
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0069 Score=60.95 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCH--HhhhccCCEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI--YETISGSDLV 182 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~--~Ea~~~ADiV 182 (434)
...+| ++|.|+|.|=.+.|++..|.+. |. +|.|.+|+.++..+.+...+-.......... .+...++|+|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dli 194 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLL 194 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEE
Confidence 34457 9999999999999999999999 86 7899999877766776654411000001111 1222269999
Q ss_pred EEeecchHHHHH----HHHHHhcCCCCcEEEEe
Q 013877 183 LLLISDAAQADN----YEKIFSCMKPNSILGLS 211 (434)
Q Consensus 183 iLavpd~a~~~v----l~eI~~~Lk~g~iL~~s 211 (434)
|.+||....... +. ...++++.++.+.
T Consensus 195 INaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 195 INATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 999997766532 11 3345666666643
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=50.72 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEeecc
Q 013877 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (434)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLavpd 188 (434)
|.|+|. |.+|..+++.|.++ |++|++..|+.++..+ ..++....+...+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887654433 3444322222334 45778899999999984
|
... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.008 Score=69.87 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhc---------CCcEEEEEecCCchhHHHHHHc-Cc--cccCCCcCCHHh---h
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE---T 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~~~~~~~E---a 175 (434)
+++|+|||+|.||..++..|.+. .+.. .+..|.|+++...+..+.+... ++ ...| +.+.++ +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLLKY 645 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHHHh
Confidence 48999999999999999999865 1000 0113666665433333333333 42 1101 345444 4
Q ss_pred hccCCEEEEeecchHHHHHHHH
Q 013877 176 ISGSDLVLLLISDAAQADNYEK 197 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~vl~e 197 (434)
++++|+|+.|+|+..+..+...
T Consensus 646 v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHH
Confidence 4689999999999988887764
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=57.29 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--C--ccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||+|.+|.++|..|... |+ ++.+.+....+....+.+. . +........+..+.+++||+||++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIit 80 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVIT 80 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEe
Confidence 7999999999999999999988 77 5666655433322222221 1 100000011234568999999997
Q ss_pred ec
Q 013877 186 IS 187 (434)
Q Consensus 186 vp 187 (434)
.-
T Consensus 81 ag 82 (315)
T PRK00066 81 AG 82 (315)
T ss_pred cC
Confidence 54
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.02 Score=58.28 Aligned_cols=137 Identities=22% Similarity=0.201 Sum_probs=93.4
Q ss_pred hhhhccccCccccccccchhhhhhhhcccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcC
Q 013877 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (434)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~ 139 (434)
|.+.-.++-|. .+-|-++-+.+--+|-|-.|.++-+= .+. .---+.| |.+.|.|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dgi--kra-TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDGI--KRA-TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhhh--hhh-hhheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 44444444333 56677777777777777777544310 000 0124666 8889999999999999999987
Q ss_pred CcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 140 G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
|-.|+|..-.+-...+.| -.|+. +.+++|+++++|+++.++--..+ +..+.+..||.++||+-..-|.
T Consensus 237 g~~VivTEiDPI~ALQAa-MeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPICALQAA-MEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchHHHHHH-hhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 888877654333334443 46887 57899999999999999876544 3346777899999988555454
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.018 Score=62.34 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=64.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--C----C-----C--cCC-------
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-----T--LGD------- 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~----~-----~--~~~------- 171 (434)
.|+.|||+|.+|...++.++.. |.+|++.+++ ....+.++..|.... + + . ..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999987 8887666555 445777877776420 0 0 0 001
Q ss_pred ---HHhhhccCCEEEEee--cchHHHH-HHHHHHhcCCCCcEEEEec
Q 013877 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 172 ---~~Ea~~~ADiViLav--pd~a~~~-vl~eI~~~Lk~g~iL~~s~ 212 (434)
..+.++++|+||.++ |-..... +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578899999988 1111122 3345677899999988664
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=58.22 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| ++|.|||.|. .|..++.-|.+. |..|.+..+. +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 36889 9999999998 999999999887 8888776542 1357788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
++.-... +. ..++++|++|+++.
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953332 21 15678999888763
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.025 Score=57.17 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.||.|.|. |++|..+.+||.+. |+++++...+..-. .+-.|+.. ..++.|+-+. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999996 88999999999987 77644344332000 11246664 5688888776 8999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~ 217 (434)
....+++++... ..-..++++++||..+
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999988654 2334578899999754
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.026 Score=57.69 Aligned_cols=119 Identities=10% Similarity=0.136 Sum_probs=81.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEee
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLav 186 (434)
.||-|-|. |.+|.-+++.+++. |-+|+-|..+.. .... ..|+.. ..++.|+.+. .|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 68999995 99999999999999 888887876533 2221 126654 6689999887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhH
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
|+....+.+.+.... .-..+|+++.||.........-.....-.+..+=||+||-..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~ 153 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIK 153 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEc
Confidence 999999888774432 123377899999753211100011112244556699988553
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.01 Score=61.24 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
..+++ ++|.|+|. |.||..+++.|... .|. ++++..|...+....+.+.+.. ...+..+++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999998 89999999999743 043 6766677544444445443311 1346788999999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++....... +.. ..++++.+++|.
T Consensus 221 ~~ts~~~~~~-I~~--~~l~~~~~viDi 245 (340)
T PRK14982 221 WVASMPKGVE-IDP--ETLKKPCLMIDG 245 (340)
T ss_pred ECCcCCcCCc-CCH--HHhCCCeEEEEe
Confidence 9987533211 111 234677777765
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0083 Score=63.28 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCchhHHHHH--------HcCccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.||+|||.|++|.+.+. .+.... +-.|.+|++.++..++ .+... ..+....=....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 443210 0115677766654332 22211 11111000014578899999999
Q ss_pred EEEeecchHHHHHH
Q 013877 182 VLLLISDAAQADNY 195 (434)
Q Consensus 182 ViLavpd~a~~~vl 195 (434)
||.+++........
T Consensus 78 Vi~ai~~~~~~~~~ 91 (423)
T cd05297 78 VINTIQVGGHEYTE 91 (423)
T ss_pred EEEeeEecCccchh
Confidence 99999976554433
|
linked to 3D####ucture |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0069 Score=57.78 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd~ 189 (434)
++|+|||+|.+|.+++..+... . .|++++...+.+....... ..|+.. ....++.+.+++ .|.|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 2777655454433211111 123321 013456677754 99999999999
Q ss_pred HHHHHHHHHH
Q 013877 190 AQADNYEKIF 199 (434)
Q Consensus 190 a~~~vl~eI~ 199 (434)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.021 Score=51.73 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999976 7889999999887 8888766432 1256788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-.. +++ ...+|||++|++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 232 3458999887743
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.018 Score=52.78 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=58.1
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccC
Q 013877 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~A 179 (434)
||.. -.++| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+. .+.+ +.. ...... ++-++++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l-~~l~~i~~-~~~~~~-~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEM-KELPYITW-KQKTFS-NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHH-HhccCcEE-EecccC-hhcCCCc
Confidence 5555 57899 9999999999999999999998 9888766332 12222 2222 211 101112 2236889
Q ss_pred CEEEEeecchHHHHHHHHHHh
Q 013877 180 DLVLLLISDAAQADNYEKIFS 200 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~ 200 (434)
|+|+.+|.|...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999888766655543
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.032 Score=61.47 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
.+|-|+|+|.+|..+++.|++. |+++++-+ .+++..+.+++.|...--|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 98876544 5566678888888643222222322 12678999999999
Q ss_pred chHHHH
Q 013877 188 DAAQAD 193 (434)
Q Consensus 188 d~a~~~ 193 (434)
|.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 987763
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.028 Score=56.61 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=67.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.+|.|.| .|.+|..+-.+|+.. |.+++++..+. +. ..+-.|+.. ..++.|+-+. .|++++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 689999999999988 88765555443 11 112257764 5678887775 6999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i 216 (434)
....+++++.... .-..++++++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999886542 23357889999964
|
ATP citrate lyases appear to form an outgroup. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.044 Score=51.84 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=50.8
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHHcCccccCCCcC---CHHhhhccCCEEEEeec
Q 013877 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (434)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~---~~~Ea~~~ADiViLavp 187 (434)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+..++.|...-..... ++.++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789995 99999999999998 9999888887532 344555677643222222 35568999999999999
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.036 Score=54.43 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=42.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHH-------c-CccccCCCcCCHHhhhccCC
Q 013877 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~-------~-G~~~~~~~~~~~~Ea~~~AD 180 (434)
|+|||. |.+|..++..|... | .++.+.+....+....+.+ . .... ....|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666665443322221111 1 1111 01345678999999
Q ss_pred EEEEee
Q 013877 181 LVLLLI 186 (434)
Q Consensus 181 iViLav 186 (434)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.021 Score=48.50 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++| ++|.|||.|.+|..=++.|.+. |-+|+|..... ...+..+... ....++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4678 9999999999999999999998 88887765542 1111222211 123456688999999999
Q ss_pred cchHHHHHHHH
Q 013877 187 SDAAQADNYEK 197 (434)
Q Consensus 187 pd~a~~~vl~e 197 (434)
.|....+-+.+
T Consensus 69 ~d~~~n~~i~~ 79 (103)
T PF13241_consen 69 DDPELNEAIYA 79 (103)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98777644433
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.036 Score=60.19 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
..|-|+|+|.+|..+++.|++. |+++++.+ ++++..+.+++.|...-.+...+.+ .-++++|.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3799999999999999999999 99876655 4455577777877643222223322 12568999999999
Q ss_pred chHHH
Q 013877 188 DAAQA 192 (434)
Q Consensus 188 d~a~~ 192 (434)
|+...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.062 Score=56.07 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=58.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--CccccCCCcCCHH----hhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~----Ea~~~ADiViLa 185 (434)
++|.|||+|.+|..+++.|.+. |++|++..+. ++..+...+. +...-.+...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 9888766554 3334444443 3321111122322 245789999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++....-+...+...+.+..+++.+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 99765433333344445555555533
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.024 Score=54.26 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc--CC----HHhhhcc
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~--~~----~~Ea~~~ 178 (434)
..++| |+|.|||-+ ..|..+|.-|.+. |..|.+.+.+............-. .+ .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs----~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE----KHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc----cccccchhhHHHHHhhh
Confidence 36899 999999987 7899999999888 888877643321110000000000 01 12 6789999
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
||+||.+++..... +. ...+|+|++|+++.
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 99999999965541 11 24578999998864
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.04 Score=52.31 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=53.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHHHHHHc-----
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA----- 160 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~----- 160 (434)
+.|++ +||.|||+|.+|..++++|... |+ ++.+.++.. .+....++..
T Consensus 17 ~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 17 QRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred HHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 67788 9999999999999999999998 87 555554320 1111111111
Q ss_pred Cccc--cCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 G~~~--~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+.. .+... .+..+.++++|+||.|+-.......+.+..
T Consensus 90 ~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 90 DIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1100 00111 124567889999999987665555665543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.031 Score=60.60 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=65.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCC-------------cCCH
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI 172 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------------~~~~ 172 (434)
..+ .||.|||+|.+|...++.++.. |.+|++.+++ ....+.+++.|.... +.. ..+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~-~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTR-PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 345 8999999999999999999887 8876655544 556788888887510 100 0010
Q ss_pred --------HhhhccCCEEEEeecchH--HHHH-HHHHHhcCCCCcEEEEe
Q 013877 173 --------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLS 211 (434)
Q Consensus 173 --------~Ea~~~ADiViLavpd~a--~~~v-l~eI~~~Lk~g~iL~~s 211 (434)
.+.++++|+||-++.-.. ...+ .++....||+|.+|++.
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 122357999999986322 2344 36777889999988765
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.039 Score=56.82 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=49.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHcCcccc-----------CC---CcCCHHhhhcc
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~-----------~~---~~~~~~Ea~~~ 178 (434)
|||+|+|.+|..+++.+.+. .+++++..++.+.+. ...|...|+..- +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156765445543321 233443332110 00 02468888999
Q ss_pred CCEEEEeecchHHHHH
Q 013877 179 SDLVLLLISDAAQADN 194 (434)
Q Consensus 179 ADiViLavpd~a~~~v 194 (434)
+|+|+.|+|......-
T Consensus 76 vDiVve~Tp~~~~~~n 91 (333)
T TIGR01546 76 VDIVVDATPGGIGAKN 91 (333)
T ss_pred CCEEEECCCCCCChhh
Confidence 9999999998776543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.072 Score=50.74 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=59.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---Cc---------------hhHHHHHH----cC
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEARA----AG 161 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~---~~---------------~s~~~A~~----~G 161 (434)
...|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.++. .+ +....++. ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999998 87 56555433 10 00000000 00
Q ss_pred -cccc--CCC--cCCHHhhhccCCEEEEeecchHHH-HHHHHHHhcCCCCcEEEEeccc
Q 013877 162 -FTEE--NGT--LGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 162 -~~~~--~~~--~~~~~Ea~~~ADiViLavpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.... +.. ..+..+.++++|+||-|+-+.... .+++++...++...+++ ..|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 0000 000 112345688899999995443444 34566777665543444 5565
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.031 Score=57.52 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=50.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-EEEEEecCCchhHHHHHH-c--CccccCCCcCC---HHhhhccCCEEEEe
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~~~~~---~~Ea~~~ADiViLa 185 (434)
|.|||+|.+|..+++.|.+. + + +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888875544444432 1 22110000223 45688999999999
Q ss_pred ecchHHHHHHHH
Q 013877 186 ISDAAQADNYEK 197 (434)
Q Consensus 186 vpd~a~~~vl~e 197 (434)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999865666654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.054 Score=50.24 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=51.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 35889 999999988 5999999999998 8887765432 1256778899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... ++ ...+|+|++|+++
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDv 107 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDV 107 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE-
T ss_pred eeccccc---cc--cccccCCcEEEec
Confidence 9985333 22 2458999988866
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.033 Score=56.17 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=57.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| |+|.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 36889 999999999 9999999999888 8888765321 1245678999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++..... +. ..++|+|++|+++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDv 228 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDI 228 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEe
Confidence 9975443 22 2356899998876
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.039 Score=53.33 Aligned_cols=79 Identities=16% Similarity=0.013 Sum_probs=48.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCccccC-C-CcCCHH
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN-G-TLGDIY 173 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~-~-~~~~~~ 173 (434)
..++| ++|+|.|+|+.|...|+.|.+. |..++...+.+. +..+...+.+-...- . ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46788 9999999999999999999998 886555445444 444444433322100 0 000112
Q ss_pred hh-hccCCEEEEeecchHH
Q 013877 174 ET-ISGSDLVLLLISDAAQ 191 (434)
Q Consensus 174 Ea-~~~ADiViLavpd~a~ 191 (434)
+. -.++|+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 21 1268888888775533
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.066 Score=59.28 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
++|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...-.|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 9887654 45566677788888754222222322 23568999999999
Q ss_pred chHHHH
Q 013877 188 DAAQAD 193 (434)
Q Consensus 188 d~a~~~ 193 (434)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 877653
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.043 Score=57.38 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++|.|||+|.+|.++|+.|++. |++|++.++... ..... +... +....+.+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999998 988766554322 11111 1110 000122333457799999887544
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.045 Score=55.61 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=42.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCccccCC-C-cCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG-T-LGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~-~-~~~~~Ea~~~ADiVi 183 (434)
.||+|||+|.+|.++|..|... |+ ++.+.+....+....+.+ ..+..... . ..+.++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999877 65 555555443322222222 21110000 1 245554 89999999
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.05 Score=54.76 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| +++.|||.+ ..|..+|.-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 36899 999999999 9999999999877 7777776542 1256788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-. .++. ..++|+|++|++++
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2232 12369999988763
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.042 Score=54.99 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCC---chhHHHHHHc---C--ccccCCCcC---CHHh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~~~~---~~~E 174 (434)
.+++ +++.|+|.|-+|.+++..|.+. |.+ |.+.+|.. ++..+.+++. + .....-... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3567 8999999999999999999988 884 88888864 3333333321 1 000000011 2234
Q ss_pred hhccCCEEEEeecchHH
Q 013877 175 TISGSDLVLLLISDAAQ 191 (434)
Q Consensus 175 a~~~ADiViLavpd~a~ 191 (434)
.++.+|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56678999999987553
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.12 Score=49.54 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+......+.| +....+. .. .+-+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~-~~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARC-FD-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCC-CC-HHHhCCcEEEEEC
Confidence 4788 9999999999999999999998 8888776554333333333333 3221111 12 3456889999999
Q ss_pred ecchHHH-HHHHH
Q 013877 186 ISDAAQA-DNYEK 197 (434)
Q Consensus 186 vpd~a~~-~vl~e 197 (434)
+.|.... .++..
T Consensus 77 t~d~~ln~~i~~~ 89 (205)
T TIGR01470 77 TDDEELNRRVAHA 89 (205)
T ss_pred CCCHHHHHHHHHH
Confidence 9987554 44443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.16 Score=52.08 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCc------hhHHHHHHc-CccccCCCcCCHHh
Q 013877 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-GFTEENGTLGDIYE 174 (434)
Q Consensus 110 g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~------~s~~~A~~~-G~~~~~~~~~~~~E 174 (434)
...||+|||. |.+|.++|..|... |+ ++.+.+.... ..++..... .+...-....+..+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~ 76 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNV 76 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHH
Confidence 4579999998 99999999988765 43 4544443211 112222111 11000000234568
Q ss_pred hhccCCEEEEeec
Q 013877 175 TISGSDLVLLLIS 187 (434)
Q Consensus 175 a~~~ADiViLavp 187 (434)
.+++||+||++--
T Consensus 77 ~~~daDiVVitaG 89 (326)
T PRK05442 77 AFKDADVALLVGA 89 (326)
T ss_pred HhCCCCEEEEeCC
Confidence 8899999998754
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.068 Score=55.20 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..+++ ++|.|||.|-||.-.+++|++. |. ++++.+|+... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34778 9999999999999999999998 86 68888887421 111100 0011133468999999
Q ss_pred ee
Q 013877 185 LI 186 (434)
Q Consensus 185 av 186 (434)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.09 Score=54.32 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=60.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec---
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp--- 187 (434)
.||||||+ .+|..++..+++. . .+++++. ..+..+++.+.|++.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~---~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-P---ERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-C---CCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999875 0 0345543 3444456677888888753 6799999988888888875
Q ss_pred -chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 -DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 -d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45666666543 45566544
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.086 Score=53.30 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| +++.|||.+. .|..++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 36889 9999999998 999999999888 8788766521 2357788899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++--.. ++. ..++++|++|+++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDv 235 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDV 235 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEe
Confidence 776432 222 2357899988876
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.13 Score=52.89 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=56.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------chhHH---HHHH
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~---------------------~~s~~---~A~~ 159 (434)
.+.|++ ++|.|||+|..|..+|.+|..+ |+ ++.+.++.. .+... ..++
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467888 9999999999999999999998 87 555554421 11111 1111
Q ss_pred --cCcccc----CCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHh
Q 013877 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (434)
Q Consensus 160 --~G~~~~----~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~ 200 (434)
.++..+ +.+..+.++.++++|+||.++-+....-++.++..
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~ 138 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ 138 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 112110 11112456788999999999976666566666543
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.16 Score=52.69 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=41.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCccccCCCc---CCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTL---GDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~~~---~~~~Ea~~~ADiV 182 (434)
+||+|||.|++|.++|..|... ++ ++.+.+.........+.+ ..+.. ...+ .+.+ .+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~-~~~i~~~~dy~-~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLP-RTKILASTDYA-VTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCC-CCEEEeCCCHH-HhCCCCEE
Confidence 5999999999999999999877 65 555555433322222221 11110 0001 2444 48999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 110 VitA 113 (350)
T PLN02602 110 IVTA 113 (350)
T ss_pred EECC
Confidence 9984
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.036 Score=56.68 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=45.8
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----c-CccccCCCc-CCHHhh
Q 013877 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYET 175 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-G~~~~~~~~-~~~~Ea 175 (434)
|.++|. +||+|||. |.+|.++|..|... ++ ++++.+.. .....+.+ . .+...+.+. .+..++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHH
Confidence 456677 99999999 99999999999865 43 55555542 11111111 1 111101111 122688
Q ss_pred hccCCEEEEeecc
Q 013877 176 ISGSDLVLLLISD 188 (434)
Q Consensus 176 ~~~ADiViLavpd 188 (434)
++++|+|+++.-.
T Consensus 74 l~gaDvVVitaG~ 86 (321)
T PTZ00325 74 LRGADLVLICAGV 86 (321)
T ss_pred hCCCCEEEECCCC
Confidence 9999999987643
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.064 Score=56.73 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+.+++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45667 89999999999999 89999999 99987766543332333445576541 1223455678998887
Q ss_pred e
Q 013877 185 L 185 (434)
Q Consensus 185 a 185 (434)
.
T Consensus 73 s 73 (461)
T PRK00421 73 S 73 (461)
T ss_pred C
Confidence 5
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.028 Score=51.57 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=61.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC------------------
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~------------------ 166 (434)
+..+.. .+|.|+|.|+.|..-+.-+..- |.+|++.+.. ....+.....+.....
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344555 7999999999999988888887 9988766654 3334444444432100
Q ss_pred ----CCcCCHHhhhccCCEEEEe--ecchHHHHHHH-HHHhcCCCCcEEEEec
Q 013877 167 ----GTLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 167 ----~~~~~~~Ea~~~ADiViLa--vpd~a~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
.....+.+.++.+|+||.+ .|+.....++. +....|+++.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0001245788999999963 45555566664 5677899999998774
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.067 Score=53.78 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCc---hhHHHHHHcCccccC-CCcCC------HHhh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYET 175 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~~~-~~~~~------~~Ea 175 (434)
.+++ +++.|||.|-.+.|++..|... |. +|.|.+|..+ +..+.+...+..... -...+ ..+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3677 8999999999999999999887 86 7888888742 444444433210000 00112 2235
Q ss_pred hccCCEEEEeecchHH
Q 013877 176 ISGSDLVLLLISDAAQ 191 (434)
Q Consensus 176 ~~~ADiViLavpd~a~ 191 (434)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997554
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=52.54 Aligned_cols=68 Identities=25% Similarity=0.342 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--chhHHHHH-------HcCccccCCC-cCCHHhhhcc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGT-LGDIYETISG 178 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~~-~~~~~Ea~~~ 178 (434)
+||+|||. |..|..++..|... |+ +|++.++.. ++....+. ..+... .-. ..+ .+.+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~~d-~~~l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKISSD-LSDVAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCc-EEEECCC-HHHhCC
Confidence 58999998 99999999999987 76 466666532 11111110 111100 000 124 456999
Q ss_pred CCEEEEeec
Q 013877 179 SDLVLLLIS 187 (434)
Q Consensus 179 ADiViLavp 187 (434)
||+||++..
T Consensus 73 aDiViitag 81 (309)
T cd05294 73 SDIVIITAG 81 (309)
T ss_pred CCEEEEecC
Confidence 999999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.1 Score=52.59 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=42.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--Cccc-cCCC--cCCHHhhhccCCEEEEee
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENGT--LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~~~--~~~~~Ea~~~ADiViLav 186 (434)
|+|||+|.+|.++|..|... |+ ++.+.+...++....+.+. .... .... ..+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 74 5666655443332222211 1110 0000 112246889999999987
Q ss_pred c
Q 013877 187 S 187 (434)
Q Consensus 187 p 187 (434)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 6
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.084 Score=53.94 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=41.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCch--hHHHHHH--cCcccc-CC--CcCCHHhhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--AGFTEE-NG--TLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~~--s~~~A~~--~G~~~~-~~--~~~~~~Ea~ 176 (434)
.||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ +...+. .. ...+..+.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 76 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAF 76 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHh
Confidence 69999999 99999999999876 54 45544442211 1111111 111000 00 013456788
Q ss_pred ccCCEEEEeec
Q 013877 177 SGSDLVLLLIS 187 (434)
Q Consensus 177 ~~ADiViLavp 187 (434)
++||+||++--
T Consensus 77 ~daDivvitaG 87 (322)
T cd01338 77 KDADWALLVGA 87 (322)
T ss_pred CCCCEEEEeCC
Confidence 99999999854
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.084 Score=53.19 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+. |..|.+.... +.+..+.+++||+|+.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEEe
Confidence 6889 999999999 8999999999887 7777655321 12566789999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDv 228 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDI 228 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEe
Confidence 985433 22 2457899988875
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.1 Score=53.56 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=53.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhh---h-hhcCCcEEEE-EecC---------Cc-hhHHHHHHcCcccc-C--CCcCCHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSL---A-EAKSDIVVKV-GLRK---------GS-RSFAEARAAGFTEE-N--GTLGDIY 173 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~---~-~~~~G~~Viv-g~r~---------~~-~s~~~A~~~G~~~~-~--~~~~~~~ 173 (434)
.+|+|||+|+||..+++.|++.- . ..+.+++|+. .+++ +. +..+.+.+.|.... . ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 58999999999999999987641 0 0122344432 2321 11 11122222332110 0 0123677
Q ss_pred hhh--ccCCEEEEeecchHHH-HH-HHHHHhcCCCCcEEEE
Q 013877 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (434)
Q Consensus 174 Ea~--~~ADiViLavpd~a~~-~v-l~eI~~~Lk~g~iL~~ 210 (434)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 3689999999986552 22 2223455667776553
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.11 Score=52.62 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++++.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999976 7899999999887 7777665421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDV 226 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDV 226 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 986433 22 3457999988875
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.11 Score=52.84 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++++.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999976 7899999999888 8787765321 23577888999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (297)
T PRK14186 209 AGRPNL---IG--AEMVKPGAVVVDV 229 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985432 32 3457999988876
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.25 Score=50.65 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=42.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--chhHHHHHH--cCcccc-CC--CcCCHHhhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGFTEE-NG--TLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~--~~s~~~A~~--~G~~~~-~~--~~~~~~Ea~ 176 (434)
.||+|||. |.+|.++|..|... |+ ++++.+... ++....+.+ +...+. .. ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 455554432 112222221 111000 00 013456788
Q ss_pred ccCCEEEEeec
Q 013877 177 SGSDLVLLLIS 187 (434)
Q Consensus 177 ~~ADiViLavp 187 (434)
++||+||++--
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999999754
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.07 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi 144 (434)
..+++ ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 55788 9999999999999999999988 98876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.082 Score=55.99 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=50.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch----hHHHHHHcCccccCCCcCCHHhhhccCC
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
...+.+ ++|+|+|+|..|.++|+-|++. |++|.+.++.... ..+..++.|+.... -....+.+.++|
T Consensus 9 ~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d 79 (458)
T PRK01710 9 KKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFD 79 (458)
T ss_pred hhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCC
Confidence 355677 9999999999999999999999 9998776654321 11335566765311 012245567899
Q ss_pred EEEEe
Q 013877 181 LVLLL 185 (434)
Q Consensus 181 iViLa 185 (434)
+||+.
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 98886
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.37 Score=51.54 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhc--CCc--EEEEEecCCchhHHHHHH--cCc-cccCC-C-cCCHHhhhccCCE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAK--SDI--VVKVGLRKGSRSFAEARA--AGF-TEENG-T-LGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~--~G~--~Vivg~r~~~~s~~~A~~--~G~-~~~~~-~-~~~~~Ea~~~ADi 181 (434)
-||+|||. |++|.++|-.|... +=+| .++ ++++.+...++....+.+ ++. ..... . ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 99999999988743 0000 022 454444443433333322 111 00000 0 1245578899999
Q ss_pred EEEeec
Q 013877 182 VLLLIS 187 (434)
Q Consensus 182 ViLavp 187 (434)
||+.--
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999754
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.15 Score=43.50 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.4
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEEeecchHHHH-HHH
Q 013877 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE 196 (434)
Q Consensus 121 ~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~-vl~ 196 (434)
+-+..++..|++. |.+|.+.+..-.. ..... ..++.. +.+.+++++.+|+|+++++-....+ -++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~ 85 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWE 85 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHH
Confidence 5677888889888 9998766543222 22222 245664 5678999999999999999888876 466
Q ss_pred HHHhcCCCCcEEEEeccc
Q 013877 197 KIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 197 eI~~~Lk~g~iL~~s~G~ 214 (434)
++...|+++.+|++..|+
T Consensus 86 ~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 86 EIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHSCSSEEEEESSST
T ss_pred HHHHhcCCCCEEEECccc
Confidence 788888888889888764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.13 Score=51.90 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999976 7899999999888 8777765421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 22 2457899998876
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.13 Score=51.98 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999987 7899999999887 7777665321 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 2457899988875
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.12 Score=52.54 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++++.+++||+|+.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999977 7899999999887 7788765321 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-. .++. ..++|+|++|+++
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDv 238 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDV 238 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEe
Confidence 9753 2332 3457999988865
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.14 Score=51.76 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=57.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ +.++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999976 7899999999987 7777765421 23677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 3457899988876
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.13 Score=51.80 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=57.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+...+ +.++++.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999977 7899999999887 7777765322 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDv 227 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDV 227 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 22 2457899988876
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.42 Score=43.82 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC----c--hhH----HHHHHcCc--cccCCCcCCHHh
Q 013877 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (434)
Q Consensus 109 ~g~kkIgIIG--~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~--~s~----~~A~~~G~--~~~~~~~~~~~E 174 (434)
+| +||++|| .+++..|++..+..- |.++.+....+ . ... +.+.+.|. .. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 489999999999887 98866654433 1 122 22333343 32 468999
Q ss_pred hhccCCEEEEeecc
Q 013877 175 TISGSDLVLLLISD 188 (434)
Q Consensus 175 a~~~ADiViLavpd 188 (434)
+++++|+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999877655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.13 Score=51.88 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.+.| +++.|||-+ ..|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 36789 999999998 4699999999988 8888776432 2356678899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++--..... .+++|+|++|+++
T Consensus 206 AvG~p~~i~-----~d~vk~gavVIDV 227 (283)
T COG0190 206 AVGKPHFIK-----ADMVKPGAVVIDV 227 (283)
T ss_pred ecCCccccc-----cccccCCCEEEec
Confidence 987533322 4678999988876
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.1 Score=52.98 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=42.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCcccc-C--CCcCCHHhhhccCCEEE
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEE-N--GTLGDIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~-~--~~~~~~~Ea~~~ADiVi 183 (434)
||+|||.|.+|.++|..|... ++ ++++.+....+....+.+ .-+... + ....+ .+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 799999999999999999877 66 555555443322222222 111100 0 01123 47789999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9854
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.26 Score=50.94 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh-ccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-SGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~-~~ADiViLav 186 (434)
.| ++|+|+|+|-.|..-.+-.+.. |.+|+...++ ++..+.|++.|...- +....+..+.+ +.+|+|+.++
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 46 8999999997777766666666 8888766655 445788888886421 11111222333 3399999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++...... .+.|+++-+++.
T Consensus 238 ~~~~~~~~----l~~l~~~G~~v~ 257 (339)
T COG1064 238 GPATLEPS----LKALRRGGTLVL 257 (339)
T ss_pred ChhhHHHH----HHHHhcCCEEEE
Confidence 93332233 344566665553
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.1 Score=55.63 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.+ ++|.|+|+|-.|.++|+-|++. |.+|.+.++......+...+.|+.... -....+-+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45667 8999999999999999999999 998877665433322333455765311 01233456788998875
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.095 Score=52.62 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCC--CcCC---HHhhhccCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~--~~~~---~~Ea~~~AD 180 (434)
.+++ +++.|||.|-.|+|++-.|.+. |. ++.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 3567 8999999999999999999988 87 67788887666655554421000000 0112 233556789
Q ss_pred EEEEeecchH
Q 013877 181 LVLLLISDAA 190 (434)
Q Consensus 181 iViLavpd~a 190 (434)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999999544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.13 Score=45.27 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
+||.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVD 33 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecC
Confidence 7999999999999999999999 87 555554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.14 Score=53.59 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=48.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH----HHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+++ ++|.|||.|.+|.++|+.|.+. |++|++.++...... +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999887776532222 222334543210 111234557799999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.17 Score=51.70 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCcEEEEEecCCchhHHHHHHcCcc----c--cCC-CcCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFT----E--ENG-TLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~----~--~~~-~~~~~~Ea~~~ADiV 182 (434)
.||+|||. |.+|.+++..|... +.....+.++++.++........+...-+. + .+- ...+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 000000236666655322111111111111 0 000 024556889999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9874
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.25 Score=50.72 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcC-CHH----hhh--ccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~-~~~----Ea~--~~ADiVi 183 (434)
.++.|+|+|.+|...++.++.. |...++..+.++...+.|++ .|......... +.. +.- ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888877 76444444555667888888 44432100001 111 222 3589999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
-|+. ....+.+....++++-.+++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334555666677787766544
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.16 Score=51.22 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=56.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 5899 999999966 7899999999887 7777765321 23677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 209 vG~p~~---i~--~~~ik~gavVIDv 229 (284)
T PRK14190 209 VGKPKL---IT--ADMVKEGAVVIDV 229 (284)
T ss_pred cCCCCc---CC--HHHcCCCCEEEEe
Confidence 975442 22 2356899998876
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.38 Score=43.18 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=64.5
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 263 iav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
|+++. +.++.+.+..|+..+|+.. +.. .+..--+||..+++ |+.+.+++....+.+.++|+++++|++...--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~~-~~i---~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGRP-FEI---DSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSEE-EE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCce-EEe---CHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 34555 7889999999999999852 222 22233389998876 99999999999999999999999988755555
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCcch
Q 013877 342 ITGIISKIISTQGMLAVYNSFSGEDK 367 (434)
Q Consensus 342 l~Gli~~li~e~G~~~m~~~vssp~~ 367 (434)
+.+ ..+-+.+.|. .+.++-|..
T Consensus 78 i~~-t~~n~~~~g~---~~alTGP~~ 99 (132)
T PF10728_consen 78 IRE-TLENILQLGP---ADALTGPAA 99 (132)
T ss_dssp HHH-HHHHHHHS-H---HHH--SCCH
T ss_pred HHH-HHHHHHhcCc---hhccCCCcc
Confidence 554 4444555554 367787754
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.31 Score=50.41 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccC--CEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A--DiViLavpd 188 (434)
-++||+|+|.|+.=.+++|.-. .+ +++.|+ |..+..+++.+.|+..++. .-....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998754 11 155443 3445455677888888883 122367899999877 999999999
Q ss_pred hHHHHHHHHHHh
Q 013877 189 AAQADNYEKIFS 200 (434)
Q Consensus 189 ~a~~~vl~eI~~ 200 (434)
.++.++.-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999988765443
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.16 Score=48.95 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=25.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
..|+. .+|.|||+|..|..+|++|...
T Consensus 17 ~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 17 EKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 67778 9999999999999999999998
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.18 Score=50.92 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 36889 999999977 7899999999887 7777765432 1356677899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... +. ..++|+|++|+++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEe
Confidence 9985443 22 2457899998876
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.23 Score=50.34 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=56.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999977 7899999999887 7777765421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-.. ++. ..++|+|++|+++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDv 230 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDV 230 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEe
Confidence 98432 222 2457899988875
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.15 Score=54.11 Aligned_cols=70 Identities=27% Similarity=0.183 Sum_probs=48.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.+++ ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+..++.|+... ..+..+....+|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 3567 8999999999999999999998 999887765432 11234556677531 11111234568999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9875
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.52 Score=47.55 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CchhHHHHHHcCccccCCCcCCHHh--hhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~~E--a~~~ADiViL 184 (434)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++..+.+++.|....+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 57 8999999999999999998888 8887766653 3455778888887531111111111 2235799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.... .+.+....++++..++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 997432 344555667777665533
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.19 Score=50.77 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=56.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5899 999999977 7899999999877 7777665432 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDv 228 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDV 228 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985433 22 2357899988875
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.1 Score=44.03 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhh--hcCC--cEEE-EEecCCc---------hhH-HHHHHcCcccc--C--C-CcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSD--IVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~--~~~G--~~Vi-vg~r~~~---------~s~-~~A~~~G~~~~--~--~-~~~~ 171 (434)
.+|+|+|+|++|..+++.|.+.-+. ...| ++|+ |.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773110 0114 4433 2232211 111 11111121000 0 0 0125
Q ss_pred HHhhh--ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 172 ~~Ea~--~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+|.+ .++|+||-++++....+++.+. |+.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 4789999999877666666554 44565444
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.7 Score=44.55 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=90.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.||+||| -|-.|.-+.+-|.+. ..+++. .... .+. +. ..+.+++++++|+||+|+|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s-~~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAP-DRR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEec-ccc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 688888888888765 123432 2222 111 22 2355667788999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
..++.+.+. ..|..|++.++- + .+ +-+++-+.|.-... .|+..+. .. +|+ .....
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad---f------Rl--~~~~~yglPEln~~-~~~~i~~--------a~-lIA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA---Y------RT--ADDWAYGFPELAPG-QREKIRN--------SK-RIA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH---H------hC--CCCCeEEccccCHH-HHHhhcc--------CC-EEE-CCCCH
Confidence 888776653 367778877763 1 11 11677777865433 2222222 22 233 44445
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHH
Q 013877 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~ 321 (434)
..+.-+++.=+...|.. +....-.+...+..+|++-..++.+.
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhh
Confidence 45555555444444532 11111245566667778777666544
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.32 Score=46.13 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467778 9999999999999999999998 87 444443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.31 Score=46.24 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
.+.++. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 367788 9999999999999999999998 87 444443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.18 Score=53.26 Aligned_cols=66 Identities=29% Similarity=0.297 Sum_probs=45.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++..... ....+.|+... ..+ .+.+.++|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 3567 8999999999999999999998 99887665442222 23445676531 112 234578998886
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.095 Score=55.65 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCchhHHHHH--------HcCccccCCCcCCHHhhhccCC
Q 013877 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~--nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
|+||+|||.|++|.+.+. .+.... .-.+.+|++.+.. ....+.+. ..+....-..+.|..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~--~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVP--ALRDAEIALMDID-PERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCc--cCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 479999999999977665 554210 0113466655543 33232111 1221100011456789999999
Q ss_pred EEEEeecch
Q 013877 181 LVLLLISDA 189 (434)
Q Consensus 181 iViLavpd~ 189 (434)
+||.++-..
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999998764
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.33 Score=49.53 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=41.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--chhHHHHHHcCccccCCC--c-C-CHHhhhccCCEEE
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAGFTEENGT--L-G-DIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~--~~s~~~A~~~G~~~~~~~--~-~-~~~Ea~~~ADiVi 183 (434)
||+|||. |++|.++|..|... ++ ++++.+... ....+.. ++.....-. . . +..+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~--~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLS--HIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhh--cCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 7999999 99999999999877 65 555444432 1122222 221100000 0 1 2367899999999
Q ss_pred Eeecc
Q 013877 184 LLISD 188 (434)
Q Consensus 184 Lavpd 188 (434)
++.-.
T Consensus 73 itaG~ 77 (312)
T TIGR01772 73 IPAGV 77 (312)
T ss_pred EeCCC
Confidence 98653
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.32 Score=48.64 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=91.5
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hH----HHH---HHcCccccCCCcCCHHhhhccCCE
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~----~~A---~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
+.||+|+|+ |.||..+.+.+.+. .++++.....+... +. ..+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 479999998 99999999999876 14565555444322 11 111 1122222 2345667788999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhH--HHHHhhcccccC-CC
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~~G~~~~G-~G 258 (434)
+|=-+-|....+.++....+= -.+|+=..||+-..++. .-...+.+.++ ++||.+--+. -.+-++--.+.+ +-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHH-HHHHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988888876544321 22566678987433322 11223345555 7898875431 011011000111 12
Q ss_pred ceEEEeecC-----CCCHHHHHHHHHHHHHhC
Q 013877 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (434)
Q Consensus 259 v~aliav~q-----dvsg~a~e~a~~la~aiG 285 (434)
+-- |-.|. -.||.|+.++..++.+.|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 222 22232 367888888888888888
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.37 Score=49.65 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------chhHHHHHH---
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~---------------------~~s~~~A~~--- 159 (434)
...|+. .+|.|||+|.+|..+|++|..+ |+ ++.+.++.. .+....++.
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467788 9999999999999999999998 87 665555421 111111111
Q ss_pred c--Ccccc----CCCcCCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 160 A--GFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 160 ~--G~~~~----~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
. .+... +-+..+..+.++++|+||.++-+.....++.+..
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 11100 0011234577899999999988777666666644
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.2 Score=51.29 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--chhH----HHHHHc-----CccccCCCcCCHH
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~--~~s~----~~A~~~-----G~~~~~~~~~~~~ 173 (434)
||+|||. |.+|.+++..|... ++ ++.+.+... +... +..... +... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355554433 2111 111110 1111 13566
Q ss_pred hhhccCCEEEEee
Q 013877 174 ETISGSDLVLLLI 186 (434)
Q Consensus 174 Ea~~~ADiViLav 186 (434)
+.+++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999874
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.21 Score=50.74 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=57.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999977 7899999999887 7777665421 23577889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDV 231 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDV 231 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 2457899988875
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.18 Score=51.53 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCchhHHHHHHcCccc-----cCC--CcCCHHhhhc
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTE-----ENG--TLGDIYETIS 177 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~-----~~~--~~~~~~Ea~~ 177 (434)
||+|||. |.+|.++|..|... ++ ++++.++........+...-... ... ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 35555543221111111100000 000 0124467899
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
+||+||++--
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999754
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.21 Score=50.77 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..++.-|.+.+... +..|.+.... ..++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 156 ETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIAA 213 (295)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 5889 999999977 78999998887611000 5566654421 23567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++-. .++. ..++|+|++|+++
T Consensus 214 vg~~---~li~--~~~vk~GavVIDV 234 (295)
T PRK14174 214 IGKA---RFIT--ADMVKPGAVVIDV 234 (295)
T ss_pred cCcc---CccC--HHHcCCCCEEEEe
Confidence 9644 3333 2346999998876
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.24 Score=50.02 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5889 999999977 7899999999877 7777665321 23567888999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-.. ++. ..++|+|++|+++
T Consensus 208 vGk~~---~i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 208 IGKAE---LVK--GAWVKEGAVVIDV 228 (282)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEe
Confidence 98432 332 2457899988875
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.23 Score=50.22 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=55.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh--hhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrd--s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... +.++.+.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 5789 999999976 789999999976 5 5667665321 236788899999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++.-... +. ..++|+|++|+++
T Consensus 209 ~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 209 AAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEc
Confidence 99985432 22 2457999988875
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.6 Score=45.61 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=61.3
Q ss_pred hhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCCCcC
Q 013877 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 92 ~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~ 170 (434)
.++-+.+-.|+.. -.++| ++|.|||.|.+|..=+..|.+. |-+|.|.-..- +...+.+....+..... ..
T Consensus 8 ~~~~~~~~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r-~~ 78 (223)
T PRK05562 8 DIYNEENKYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKG-NY 78 (223)
T ss_pred HHhhccCCEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeC-CC
Confidence 3333334445554 56678 8999999999999989999988 87777664432 23223333222322111 12
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
+. +-++.+++||.||.|...-+-+.+.+
T Consensus 79 ~~-~dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DK-EFIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred Ch-HHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 23 33578999999999988865554443
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.46 Score=45.88 Aligned_cols=82 Identities=17% Similarity=0.022 Sum_probs=56.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- ++......+.+...-+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 45788 9999999999999999999988 88887765543 3333444444422101 123444444 4999999
Q ss_pred eecchHHHH-HHH
Q 013877 185 LISDAAQAD-NYE 196 (434)
Q Consensus 185 avpd~a~~~-vl~ 196 (434)
+|+|....+ +++
T Consensus 79 At~d~~ln~~i~~ 91 (210)
T COG1648 79 ATDDEELNERIAK 91 (210)
T ss_pred eCCCHHHHHHHHH
Confidence 999988764 443
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.21 Score=51.68 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... +.+..+.+++||+||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999976 6899999999877 7777665332 13567889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDV 285 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDV 285 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 2457899998876
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.17 Score=55.05 Aligned_cols=75 Identities=25% Similarity=0.193 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViLav 186 (434)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+...+.... ...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEecc
Confidence 667 8999999999999999999998 88888888765555555544432110 01122222 23568888888
Q ss_pred cchHH
Q 013877 187 SDAAQ 191 (434)
Q Consensus 187 pd~a~ 191 (434)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 86553
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.21 Score=52.10 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ ..++.+.+++||+||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999976 7899999999887 7777765321 23677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEec
Confidence 985443 22 2457999988875
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.15 Score=53.87 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=50.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh----hhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~----~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.+|||||+|.+|..+++.|.+..+ ..|.++++. +..+...+ .+.....+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 112234433 23333221 1101011111 1457888885 4699999
Q ss_pred eecchH-HHHHHHHHHhcCCCCcEEEE
Q 013877 185 LISDAA-QADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 185 avpd~a-~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++++.. +.+. +...|+.|+-|+.
T Consensus 79 ~tg~~~~~~~~---~~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPAREL---ILKALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHH---HHHHHHCCCeEEE
Confidence 987642 2233 3344566765543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.57 Score=48.02 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=41.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--cCcccc--CCC-cC-CHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGT-LG-DIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~--~~~-~~-~~~Ea~~~ADiViLa 185 (434)
+||+|||.|.+|.+.|..|... +.+-++.+.+.......-.+.+ ++.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 1122555555442222222221 111100 000 11 125678999999998
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.45 Score=48.45 Aligned_cols=118 Identities=8% Similarity=0.137 Sum_probs=77.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.||.|.| .|.-|..+-..+..- |-+++.|.....- ..+-.|... ..++.|+-+. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 788888888888887 8888888765320 111246664 5678887765 7999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
....+.+++.... .-..+|++++||.-...++.....-..-.+-.+=||+.|-.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 9999999886542 22347789999963322111111111223334458777654
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.48 Score=48.12 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh----HHHHHHcC--ccccCCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAG--FTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s----~~~A~~~G--~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+||+|||. |.+|.+++..|...+ +.+.++.+.++. +.. .+... .+ .........++.+.++++|+||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~-~~~~~~i~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSH-IPTAVKIKGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhc-CCCCceEEEeCCCCHHHHcCCCCEEEE
Confidence 68999999 999999999885421 113355555543 222 12111 01 11100001355678899999999
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
+.-.
T Consensus 76 taG~ 79 (312)
T PRK05086 76 SAGV 79 (312)
T ss_pred cCCC
Confidence 9753
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.26 Score=52.90 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|.|+|+|..|.+.++-|++. |.+|++.++.. ...+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~-~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDP-DALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 99988766442 234445666765311 11234567789998886
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.17 Score=52.54 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcc---c-cCC-C---------c--CCHH-
Q 013877 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (434)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~---~-~~~-~---------~--~~~~- 173 (434)
|||.++|.|++|+++ +.-|.++ |++|+..+.. +...+...+.|.- . .++ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 589999999999976 6666666 8887655543 3345555555641 1 111 0 1 0112
Q ss_pred --hhhccCCEEEEeecchHHHHHHHHHHhcC
Q 013877 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (434)
Q Consensus 174 --Ea~~~ADiViLavpd~a~~~vl~eI~~~L 202 (434)
+.+..+|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999877666666665544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.62 Score=43.28 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r 148 (434)
||.|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 77 4555443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.48 Score=40.50 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---chhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecchHHH
Q 013877 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (434)
Q Consensus 118 G~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~a~~ 192 (434)
|+|++|..++..|...-+. .+++++...+++ ...+......... +.+.++++. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 134443333332 1222222222222 568888888 899999999998887
Q ss_pred HHHHHHHhcCCCCcEEE
Q 013877 193 DNYEKIFSCMKPNSILG 209 (434)
Q Consensus 193 ~vl~eI~~~Lk~g~iL~ 209 (434)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 777654 44566444
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.63 Score=41.16 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
||.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 454443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.68 Score=45.24 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCCCcCCHHhhh------ccCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~------~~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|....-. ..+..+.+ ...|+
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCE
Confidence 57 8999999999999999988887 886 5544 44455678888888742000 01111211 24799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+-++.... .++.....++++..++..
T Consensus 191 vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 998885432 233334556666655533
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.43 Score=45.81 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
...|+. .+|.|||+|.+|..+|++|... |+ ++++.+
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD 59 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVD 59 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEe
Confidence 467888 9999999999999999999988 77 454444
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.47 Score=47.81 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=48.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-----C----ccccCCCcCCHH---hhhccC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----G----FTEENGTLGDIY---ETISGS 179 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-----G----~~~~~~~~~~~~---Ea~~~A 179 (434)
+||+|||.|.+-.+...-.+.. +.+.. +.+.+.++...+.+++. | .... +.+.. .-+.+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~---~~d~~~~~~dl~~~ 193 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFI---TADVLDVTYDLKEY 193 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEE---ES-GGGG-GG----
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEE---ecchhccccccccC
Confidence 5999999999987755443333 11223 34666666555555331 1 1110 12322 235678
Q ss_pred CEEEEeecch----HHHHHHHHHHhcCCCCcEEE--Eeccch
Q 013877 180 DLVLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (434)
Q Consensus 180 DiViLavpd~----a~~~vl~eI~~~Lk~g~iL~--~s~G~~ 215 (434)
|+|+++.-.. .=.++++.|.++|++|+.|+ .++|..
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9999997766 33579999999999999876 667763
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.6 Score=50.29 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=65.5
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-----ccc-------
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------- 164 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~------- 164 (434)
.++| +||+|+|+ .+-...++..|.+. |.+|.+++..-. ..+.....+ +..
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVT-EEQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCC-hHHHHHHhhccccccccccccccc
Confidence 4788 99999998 56778888888888 998876654321 111111121 100
Q ss_pred ------cCCCcCCHHhhhccCCEEEEeecchHHHHH-HHHHHhcCCCCcEEEEeccc
Q 013877 165 ------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 165 ------~~~~~~~~~Ea~~~ADiViLavpd~a~~~v-l~eI~~~Lk~g~iL~~s~G~ 214 (434)
.-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|++..+.
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 000134567899999999999998777643 55677777765577776654
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.3 Score=51.11 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCC-CcCCHH-hhhccCCEEEEee
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENG-TLGDIY-ETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~-~~~~~~-Ea~~~ADiViLav 186 (434)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+. ...+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999996 89999999887765 1346544433211 1111110 00000000 011222 2257899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|.....++.+.+ +.|..|++.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666553 457777766653
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.28 Score=49.07 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+++.|||.|-.+.|++..|.+. |. +|.|.+|..++..+.+...+.. ..+ .-....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 87 6888999876666666554432 111 001246899999999654
Q ss_pred H
Q 013877 191 Q 191 (434)
Q Consensus 191 ~ 191 (434)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.33 Score=49.28 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=55.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+...+ ..++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCCE
Confidence 5889 999999977 7899999998765 4 355554321 2357788899999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||.++.-... +. ..++|+|++|+++
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDv 232 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDV 232 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 9999985443 22 2457899988876
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.63 Score=48.31 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------CchhHHHHHHc----
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~-------------------~~~s~~~A~~~---- 160 (434)
...+++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 357888 9999999999999999999998 87 55555443 11222111111
Q ss_pred C-cccc--CCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 G-FTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 G-~~~~--~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
. +... .... .+..+.++++|+||.|+-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1 1110 0011 123457789999999987665555555543
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.4 Score=48.70 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| .||++||-| ++..+++..+..- |.+|.+...++ ....+.+++.|.... ...|+++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999995 9999999999877 98887765432 122355666665321 146899999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.23 Score=50.18 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=55.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrd----s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++.+.+++||+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~ADI 207 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREADF 207 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCCE
Confidence 6889 999999977 789999999987 4 5566655421 1357788999999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||.++.-... +. ..++++|++|+++
T Consensus 208 VI~AvG~p~l---i~--~~~vk~GavVIDV 232 (286)
T PRK14184 208 LFVAIGRPRF---VT--ADMVKPGAVVVDV 232 (286)
T ss_pred EEEecCCCCc---CC--HHHcCCCCEEEEe
Confidence 9999964332 32 2346899988876
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.47 Score=46.53 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
.+.|+. ++|.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 477888 9999999999999999999998
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.41 Score=48.24 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=58.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|+|||--.=-..+++.|.+. |++|.+..-+++. . ...|... +.+.++++++||+|++.+|+...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccccC
Confidence 8999999888888899999998 9988774322211 1 2346664 45678899999999999886311
Q ss_pred ----HH-------HH-HHHHhcCCCCcEEE
Q 013877 192 ----AD-------NY-EKIFSCMKPNSILG 209 (434)
Q Consensus 192 ----~~-------vl-~eI~~~Lk~g~iL~ 209 (434)
.. .+ .+....|++|+++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 69 EGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred CceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 01 11 35677889997544
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.59 Score=46.47 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=55.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
++ +++.|+|.|.+|...++-++.. |.++++..+......+.|.+.++.. ...+.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 7899999999999999888877 8875555555444455665544321 111122357999999886
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 189 AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.. .++...+.++++..+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 233444556676665533
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.33 Score=50.80 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=46.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc---hhHHHHHHcCccccCCCcCCHHhhhcc-CCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~---~s~~~A~~~G~~~~~~~~~~~~Ea~~~-ADiVi 183 (434)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 467 9999999999999999999999 999877664322 2223344556643100 123344444 89887
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 754
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.25 Score=50.63 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCc--hhHHHHHHcCc-cccC-CCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~-~~~~-~~~~~~~Ea~~~ADiViL 184 (434)
.||+|||. |++|.++|..|... ++ ++.+.+.... ...+....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 55 5555544321 11121111111 1101 012345789999999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 854
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.66 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
...+++ .+|.|||+|-.|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.64 Score=47.59 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=86.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
.||+||| .|..|..+.+-|.+. . +++. .....+.. . ..+.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~-~~~s~~~~------~--------~~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELL-SIPEAKRK------D--------AAARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEE-EEecCCCC------c--------ccCchhhhcCCCEEEECCCHH
Confidence 6899999 799999999888765 3 2432 22221111 1 112345567899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
...++.+++. +.|..|++.++- + .+.+ +++.+.|.--.. .|+..+. ... |+ ..+.
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALID---NPATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGC 116 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCc
Confidence 8888877764 357778877663 1 1111 677777855332 2333332 122 33 3344
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES 319 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea 319 (434)
...+.-+++.=+..-|.. ++...-.+...+..||.+-..++.
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~ 158 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAA 158 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHH
Confidence 444555444444444432 111112345556667777665444
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.36 Score=49.73 Aligned_cols=87 Identities=25% Similarity=0.216 Sum_probs=52.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEE--EEEecCCc---hhHHHHHHcCccccCCCc--CCHHhhhccCCEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVV--KVGLRKGS---RSFAEARAAGFTEENGTL--GDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~V--ivg~r~~~---~s~~~A~~~G~~~~~~~~--~~~~Ea~~~ADiVi 183 (434)
.+|+|||. |..|..+.+-|.++ ++.+ +....... +... -.| . +-.+ .+..+ ++++|+||
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~-~--~l~~~~~~~~~-~~~vD~vF 71 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAG-K--NLRVREVDSFD-FSQVQLAF 71 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCC-c--ceEEeeCChHH-hcCCCEEE
Confidence 68999995 99999999999876 5521 12332211 1111 111 1 0001 12233 47899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+++|.....++.+++. +.|..+++.+|.
T Consensus 72 la~p~~~s~~~v~~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 72 FAAGAAVSRSFAEKAR---AAGCSVIDLSGA 99 (336)
T ss_pred EcCCHHHHHHHHHHHH---HCCCeEEECchh
Confidence 9999776666665543 357777777663
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.97 Score=47.29 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=89.3
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCcE--EEEEecCCchhHHHHHHcCccccCCCcCCH-H-hhhccCCEEEEe
Q 013877 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV--VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLr-ds~~~~~~G~~--Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~-Ea~~~ADiViLa 185 (434)
++|||||+ |..|..+.+.|. +. .+. ..+.... +++..+- ..|......+.+. + +..++.|++|.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss-~~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivffa 71 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFST-SQLGQAA--PSFGGTTGTLQDAFDIDALKALDIIITC 71 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEc-hhhCCCc--CCCCCCcceEEcCcccccccCCCEEEEc
Confidence 58999997 999999999888 44 442 1122211 1111111 1111000012222 2 356789999999
Q ss_pred ecchHHHHHHHHHHhcCCCC--cEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g--~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
.+.....++..... +.| ++|++.++.- ...+ +|-.+-|---...+..... .|+.. |
T Consensus 72 ~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~---------Rmd~--dVPLVVPeVN~~~i~~~~~-------~gi~~-i 129 (366)
T TIGR01745 72 QGGDYTNEIYPKLR---ESGWQGYWIDAASSL---------RMKD--DAVIILDPVNQDVITDGLN-------NGIRT-F 129 (366)
T ss_pred CCHHHHHHHHHHHH---hCCCCeEEEECChhh---------hcCC--CCCEEeCCcCHHHHHhHHh-------CCcCe-E
Confidence 99886666665543 467 6677777641 1122 3444556554444433212 24533 2
Q ss_pred eecCCCCHHHHHHHH-HHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 264 av~qdvsg~a~e~a~-~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
+ ..+.+--..-+++ .|....|-.+++-||+.. +||.+...++-+.+...
T Consensus 130 a-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 130 V-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQMG 179 (366)
T ss_pred E-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHHH
Confidence 2 3444544444443 444445555555554332 67777766665555544
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.32 Score=52.07 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHc--CccccCCCcC-CHHhhhccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~~~~-~~~Ea~~~ADiVi 183 (434)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 456 8999999999999999999999 999876654322 222333344 33321 11 2345667899999
Q ss_pred Ee--ecc
Q 013877 184 LL--ISD 188 (434)
Q Consensus 184 La--vpd 188 (434)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 86 555
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.56 Score=50.02 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (434)
++ ++|.|||.|..|.+.|..|++. |++|++..+... ...+.+++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 67 9999999999999999999998 998877765421 12455667776431111
Q ss_pred -c---CCHHhhhccCCEEEEeecc
Q 013877 169 -L---GDIYETISGSDLVLLLISD 188 (434)
Q Consensus 169 -~---~~~~Ea~~~ADiViLavpd 188 (434)
+ ...++.....|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1234445578999998854
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.2 Score=45.42 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-----Ccccc-CCCcCCHHhh---hccC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEE-NGTLGDIYET---ISGS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-----G~~~~-~~~~~~~~Ea---~~~A 179 (434)
.. ++|..||+|..|.+-..-++...+ +- .+++.+.++...+.|++. |+... .=...|..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 44 899999999887754433333211 11 346788777666666542 22100 0001233222 3578
Q ss_pred CEEEEeec----chHHHHHHHHHHhcCCCCcEEEE--eccc
Q 013877 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (434)
Q Consensus 180 DiViLavp----d~a~~~vl~eI~~~Lk~g~iL~~--s~G~ 214 (434)
|+|++.+= .....++++.+...|+||.++++ +||.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999951 24556899999999999998764 4553
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.81 Score=47.32 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHHHHHH-----
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (434)
...|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 77 444443221 111111111
Q ss_pred cCcccc--CCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 160 ~G~~~~--~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
..+..+ .... .+..+.++++|+||.++-+.....++.+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 011110 0111 123567899999999987766665666543
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.31 Score=52.15 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh---HHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.+.+ +||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+.. +. +-..++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~-~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD-EDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch-hccccCCEEE
Confidence 3456 9999999999999999999999 99998887543221 1222345554322211 12 5677899998
Q ss_pred Ee
Q 013877 184 LL 185 (434)
Q Consensus 184 La 185 (434)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 75
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.56 Score=52.02 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=51.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (434)
-++ ++|+|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+...-+
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 357 9999999999999999999998 999888765431 1234455666532111
Q ss_pred C----cCCHHhhhccCCEEEEeecc
Q 013877 168 T----LGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 168 ~----~~~~~Ea~~~ADiViLavpd 188 (434)
+ ..+..+.....|.||+++--
T Consensus 381 ~~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CccCCcCCHHHHHhcCCEEEEeCCC
Confidence 1 12355666778999998853
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.39 Score=52.26 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------chhHHHHHHcCcccc-
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (434)
.-.| ++|.|||.|..|.+.|..|++. |++|++..+.+ ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4567 9999999999999999999998 99887765321 123456777786421
Q ss_pred CCCc-C--CHHhhhccCCEEEEeecch
Q 013877 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (434)
Q Consensus 166 ~~~~-~--~~~Ea~~~ADiViLavpd~ 189 (434)
+... . +.++.-...|+||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 2333445689999998643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.94 Score=45.53 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=59.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc---cCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~---~ADiVi 183 (434)
+| ++|.|+|.|.+|...++-++.. |. +|++..+. .+..+.+++.|.... +....+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999888887 87 45544444 455788888886420 100112333322 379999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
-++.... .++.....++++..++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9987532 333444556777665543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.31 Score=49.67 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecC--CchhHHHHHHcCc-cccCC-CcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAGF-TEENG-TLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~--~~~s~~~A~~~G~-~~~~~-~~~~~~Ea~~~ADiViL 184 (434)
+||+|||. |++|.++|..|... ++ ++++.+.. .....+....... ..... ...++.+.+++||+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 45444432 1122222221111 11000 01234688999999998
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 854
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.64 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds 133 (434)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.44 Score=49.23 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=54.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEE-EE-ecCCchhHHHHHHcCccccCCCcCC-HHhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VG-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~---~Vi-vg-~r~~~~s~~~A~~~G~~~~~~~~~~-~~Ea~~~ADiViL 184 (434)
.||+||| .|..|..+.+-|.++ ++ ++. +. .+...+.... .|... .+.+ ..+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 6899999 578899999888876 55 222 11 2222222211 12110 0111 1245588999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++.++.. +.|..|++.++.
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999988777777643 368888877763
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.48 Score=48.56 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=54.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCch-hHHHHHHcCc------c--ccCCCcCC-HHhhhccC
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR-SFAEARAAGF------T--EENGTLGD-IYETISGS 179 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~-s~~~A~~~G~------~--~~~~~~~~-~~Ea~~~A 179 (434)
+||+|||+ |-+|..+++.|.+. . +++....+.... .........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 47999995 99999999988765 4 465444333211 0111111111 0 00000111 12355789
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+|++|+|.....++.+.+. ..|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLA---EAGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHH---HCCCEEEECChh
Confidence 99999999998888776553 357767766663
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.12 Score=47.10 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=50.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+..+| +||++||+ +.+ ++..|++. +.++.+.++.... ... ...++. ..+.++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 333 77778766 7888888776322 111 112232 35678999999998865
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
-. ...-..++.|..+.+++..++
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~vi 92 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREVI 92 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEEE
T ss_pred ee-eeecCCHHHHHHhCccCCeEE
Confidence 33 223345555555555454443
|
; PDB: 3L5O_B 3NPG_A. |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.29 Score=50.35 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=44.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
-+| .+++|+|+|..|.|.+++.|.. |-.-|++.|.+++..++|++.|++.
T Consensus 191 ~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 191 EPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 356 8999999999999999999998 8766789998888899999999974
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.55 Score=47.86 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=50.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHH----HcC--ccccCCCcCCHHhhh
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEAR----AAG--FTEENGTLGDIYETI 176 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~----~~G--~~~~~~~~~~~~Ea~ 176 (434)
|+| +||++||=| ||+.++...-..- |+++.+...+ ++.-++.|+ +.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999977 7888887776666 9988876443 333344443 345 332 46899999
Q ss_pred ccCCEEEEeecc
Q 013877 177 SGSDLVLLLISD 188 (434)
Q Consensus 177 ~~ADiViLavpd 188 (434)
++||+|..=+..
T Consensus 220 ~gADvvyTDvWv 231 (310)
T COG0078 220 KGADVVYTDVWV 231 (310)
T ss_pred CCCCEEEecCcc
Confidence 999999876553
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.53 Score=48.15 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=54.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCc--hhHHHHHHcCccccCCCcCCHH-hhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~-Ea~~~ADiViL 184 (434)
+||+||| .|..|..+.+-|.+. ++ ++....+..+ +... -.|... .+.+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7999999 689999999999886 65 3333333211 2111 112111 012221 33478999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|.....++.+.+. +.|..|++.++
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCc
Confidence 999888888776653 45777776655
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.75 E-value=1 Score=45.22 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH-hhhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~-Ea~~~ADiViLavp 187 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|... +.+.. +.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999888877777 8887655554 44578899999753 22211 11234688887766
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.. +.+....+.++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3565666678887766543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.3 Score=44.57 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhhhhhhcCCcE---EEEEecCCchhHHHHHHcCccccCCCcCC-H-HhhhccCCEEE
Q 013877 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD-I-YETISGSDLVL 183 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~-nLrds~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~-~Ea~~~ADiVi 183 (434)
|.+|||||. |..|.-+.+ -|... .+. +.. ..+ +++-..- ..|.-....+.+ . .+..+++|+||
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss-~~sg~~~--~~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FST-SQAGGAA--PSFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecc-hhhCCcc--cccCCCcceEEecCChhHhcCCCEEE
Confidence 478999996 999999997 55544 443 433 222 1111111 111100001111 1 23457899999
Q ss_pred EeecchHHHHHHHHHHhcCCCC--cEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g--~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
+++|.....++.+++.. .| .+|++.++.- .. +-+|..+-|---...+...-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f---------R~--~~dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAASTL---------RM--KDDAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChHH---------hC--CCCCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99999877777776543 56 5577776641 11 115666777665554432111 23333
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhchHHHHHHHHHHHHH
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v 325 (434)
|+ +.+.+..+.-+++.=+...|.. +++-+ .-..+||++...++-+.+...
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQMG 180 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHHHH
Confidence 33 4555555555555545555543 22222 223467887776665555443
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=1 Score=47.46 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=54.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
..|-|+|+|.+|..+++.|++. |+++++.... + .+...+.|...-.|...+.+ .-+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5699999999999999999988 8877665543 1 23333344322112222322 13668999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-~iL~~s 211 (434)
|+...-..-.....+.|+ +++..+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876653332223334443 455433
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.59 Score=48.17 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| +||++||-+ ++..|++..+..- |.+|.+...+. +...+. +++.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 999999975 8888988888876 88877654331 122222 334563210 146899999
Q ss_pred ccCCEEEEe
Q 013877 177 SGSDLVLLL 185 (434)
Q Consensus 177 ~~ADiViLa 185 (434)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.71 Score=46.01 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC---CHHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~Ea~~~ADiViLavp 187 (434)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.+. +..++++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999999 99988777764332 2222234422111122 34677899999998764
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.71 Score=45.23 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=53.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHH---HHHHc-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~---~A~~~- 160 (434)
.+.+++ .+|.|||+|-+|..+|.+|... |+ ++++.++.. .+... ...+.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 444333210 01111 11111
Q ss_pred -Cccc--cCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~~--~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+.. .+... .+..+.++++|+||.++-+......+.+..
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 1110 01111 124567889999999987766666666543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.4 Score=43.58 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=63.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH----HcCccccCCCcCCHHhhhc---cCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~Ea~~---~AD 180 (434)
+.| ++|.=|||| |+.++.-|.+. |.+| .|.|-.++..+.|+ +.|+.. +-...+.+|++. .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 778 999999998 45777777777 8886 57777677666665 445542 222345667665 578
Q ss_pred EEEEe-----ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLa-----vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+.+ +||... ++..+...+|||.++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 88764 554433 777888999999887766
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.73 Score=44.24 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=59.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLavp 187 (434)
|||+||| -|..|..+++-..+. |++|....|+.++.... .+......-+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6899999 589999999999999 99998777875543221 233221111233 3467788899999865
Q ss_pred ch------HHHHHHHHHHhcCCC-Cc-EEEEeccch
Q 013877 188 DA------AQADNYEKIFSCMKP-NS-ILGLSHGFL 215 (434)
Q Consensus 188 d~------a~~~vl~eI~~~Lk~-g~-iL~~s~G~~ 215 (434)
.. .+.+..+.+...++. |. -+.++.|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 222333334455544 33 255566653
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.69 Score=46.86 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=54.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..++.-|.+.. +..+..|.+.... +.++++.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999977 78999999887650 0002355543221 24678889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.-... +. ..++|+|++|+++
T Consensus 208 vG~p~~---i~--~~~ik~GavVIDv 228 (287)
T PRK14181 208 IGVPLF---IK--EEMIAEKAVIVDV 228 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985432 22 2457899998876
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.83 Score=46.62 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch--hH----HHHHHcC-ccccCCCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~--s~----~~A~~~G-~~~~~~~~~~~~Ea~~~ 178 (434)
.++| +||++||- +++..+++..+..- |.+|.+...+.-. .. +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999997 68999999988877 9888766544311 11 2233344 222 4689999999
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.84 Score=46.15 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=40.1
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ccccC-CCcCCHHhhhccCCEEEEeec
Q 013877 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEEN-GTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 116 IIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~-~~~~~~~Ea~~~ADiViLavp 187 (434)
|||.|.+|.++|..|... ++ ++.+.+.........+.+ +. +...+ ....+..+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 555555443333333332 11 11000 001234578899999999754
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.62 Score=48.57 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=55.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------chhHHHHH---Hc-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---AA- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~---~~- 160 (434)
...|++ .+|.|||+|-.|..++.+|... |+ ++.+.++. . .+....++ +.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 55444332 0 01111111 11
Q ss_pred -Ccc--ccCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~--~~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+. ...... .+..+.++++|+|+-|+-......++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 101111 134568899999999988877777777654
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.5 Score=44.77 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-cCCHHhhhccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~Ea~~~ADiViLav 186 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++......+..+.+++.|.... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 56 8999999999999999988887 88876655554454556667776320 000 001222233579999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.... .+++....++++..++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6422 3334445566666554
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.7 Score=46.10 Aligned_cols=172 Identities=19% Similarity=0.117 Sum_probs=98.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHH--HHHc--Ccccc----------------CCCc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE--ARAA--GFTEE----------------NGTL 169 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~--A~~~--G~~~~----------------~~~~ 169 (434)
|.+|-|+|.|..+--+|..++.. +- +|=+..|.+.++... +.+. +.... +...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999876 33 455556654444322 2222 21100 1113
Q ss_pred CCHHhhhccCCEEEEeecchHHHHHHHHHHh-cCCC-CcEEEEeccchhhhhhccc-ccCCCCccEEEe----------c
Q 013877 170 GDIYETISGSDLVLLLISDAAQADNYEKIFS-CMKP-NSILGLSHGFLLGHLQSMG-LDFPKNIGVIAV----------C 236 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~-~Lk~-g~iL~~s~G~~i~~~~~~~-i~~~~di~VI~v----------~ 236 (434)
.+.+++..+=|.+|||||-++..+|+++|-+ .|+. .++|.++..|.-+.+.+.. -....++.||.. .
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 4567778888999999999999999987643 2322 2356677665422211100 022236666643 2
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhc
Q 013877 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEY 298 (434)
Q Consensus 237 Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~-~iettf~~E~ 298 (434)
...|-.+.-...++ ..++. ..+.....++....++..+|-.- .+.+-+..|.
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~ 207 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAES 207 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhh
Confidence 23343443222222 22233 23444467777789999999753 4555455554
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.81 Score=47.23 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..+++..+..- |.+|.+.-.+. ....+ .++..|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999976 7899999888876 88877654332 11222 2333453210 146899999
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
++||+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.2 Score=46.50 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=61.5
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| ++|+|+|+ -+-...++..|.+. |.+|.+++..-.. ... ...+. +.+..|++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 3688 99999998 56777888889888 9998776544222 111 11221 35788999
Q ss_pred ccCCEEEEeecchHHHH-HHHHHHhcCCCCcEEEE
Q 013877 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~-vl~eI~~~Lk~g~iL~~ 210 (434)
++||+|++++.-....+ -++.+...+++ .+|++
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999887764 35567766654 35554
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.84 Score=46.93 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=53.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHH-HcCcc-----c---cCCCc--CCHHhhhcc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFT-----E---ENGTL--GDIYETISG 178 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~-----~---~~~~~--~~~~Ea~~~ 178 (434)
.||+|+| .|.+|..+++.|.+. . +++....+..+..-+... ..++. . .+-.+ .+. +.+.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~------p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC------CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcC
Confidence 7899998 899999999988865 3 355433233211110010 01110 0 00001 133 44578
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|+|++++|.....++.+.+. +.|..+++.+|
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~ 108 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFA---KAGKPVFSNAS 108 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHH---HCCCEEEECCc
Confidence 999999999987777765543 34666666655
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.6 Score=45.30 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=50.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhh-hccCCEEEE
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea-~~~ADiViL 184 (434)
|.||+|||. |--|.-+.+-|... ..+++.....+..+-...... .|.....-...+.+++ ..++|+||+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 479999994 66666666666543 133543332211010011111 1221000012233443 445899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|+..-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999998888877543 4555776665
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.47 Score=48.99 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=54.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEec--CCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~---~Vivg~r--~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViL 184 (434)
.+|+|||. |..|.-+.+-|.++ .+ ++..... ...+.....-. ... +.+.++. ..++|+||+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~------~hP~~~l~~laS~~saG~~~~~~~~-~~~-----v~~~~~~~~~~~Dvvf~ 72 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAER------QFPVGELYALASEESAGETLRFGGK-SVT-----VQDAAEFDWSQAQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcC------CCCceEEEEEEccCcCCceEEECCc-ceE-----EEeCchhhccCCCEEEE
Confidence 78999996 99999999988874 33 4332221 11222221000 111 2233333 268999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++.++.. +.|..|++.++.
T Consensus 73 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 99 (336)
T PRK08040 73 VAGREASAAYAEEAT---NAGCLVIDSSGL 99 (336)
T ss_pred CCCHHHHHHHHHHHH---HCCCEEEECChH
Confidence 999987777776653 358888877663
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.6 Score=44.40 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhHHH-HHHcCccccCCCcCCHHhhhccCC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~~~-A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
.++| .||++||- ++...+++..+..- |.+|.+.....- ...+. +++.|.... ...+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4778 89999997 78999999988877 888776543321 11121 555664321 1468999999999
Q ss_pred EEEEe
Q 013877 181 LVLLL 185 (434)
Q Consensus 181 iViLa 185 (434)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.91 Score=50.42 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=49.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (434)
.| ++|+|||.|..|.+.|..|++. |++|+|..+... +..+.+++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999998 999888765321 12344556675421111
Q ss_pred -c---CCHHhhhccCCEEEEeec
Q 013877 169 -L---GDIYETISGSDLVLLLIS 187 (434)
Q Consensus 169 -~---~~~~Ea~~~ADiViLavp 187 (434)
+ .+.++.....|.||+++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1 134455567899999874
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.74 Score=44.17 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=46.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcCC----HHhhh-cc
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~----~~Ea~-~~ 178 (434)
+..++ ++|.|+|. |.+|..+++.|.+. |++|++..|..++....... .++....+.+.+ ..+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45556 99999995 99999999999998 99987766654332111111 122111011222 23445 57
Q ss_pred CCEEEEeecc
Q 013877 179 SDLVLLLISD 188 (434)
Q Consensus 179 ADiViLavpd 188 (434)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 8999987654
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.77 Score=49.01 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=45.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH---HHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 467 9999999999999999999999 999888764322111 1222222221 1 1122456678999887
Q ss_pred e
Q 013877 185 L 185 (434)
Q Consensus 185 a 185 (434)
.
T Consensus 76 S 76 (468)
T PRK04690 76 S 76 (468)
T ss_pred C
Confidence 5
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.87 Score=46.36 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=54.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| |+|.|||-+ ..|..+|.-|.+. .++.+..|.+.... ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999976 7899999988765 00002356554321 2357788999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... +. ..++|+|++|+++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEec
Confidence 9874332 22 2457899988875
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.4 Score=43.00 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.+ ++|.-||+|+ | .++..+.+. |...+++.+.++...+.|++. ++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344455555 554356777766666655542 3310 0000000014799887
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.+....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665555667888899999999887754
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.77 Score=52.34 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
++|.|||+|-.|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+|++.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 679999999999997 9999999 99987766543333344455677542 12233566789998864
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.89 Score=46.85 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhH----HHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..|++..+..- |.+|.+...+. .... +.+.+.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 999999987 6788888888776 88877654331 1111 22334463211 146899999
Q ss_pred ccCCEEEEe
Q 013877 177 SGSDLVLLL 185 (434)
Q Consensus 177 ~~ADiViLa 185 (434)
++||+|..-
T Consensus 224 ~~aDvVyt~ 232 (334)
T PRK01713 224 KGVDFVHTD 232 (334)
T ss_pred CCCCEEEEc
Confidence 999999974
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.79 E-value=1 Score=46.25 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=53.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCcc---------cc------CCC---cC---
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NGT---LG--- 170 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~------~~~---~~--- 170 (434)
||||+|+|.+|+.+.+.|.++- .+.+++|...++. +.+......+++-+ .+ ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6999999999999999988650 0013565433432 23333444333211 00 000 11
Q ss_pred CHHhh---hccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 171 ~~~Ea---~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++++. -.+.|+|+.|++.....+.... +++.|+.+++.
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~ 119 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLF 119 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEe
Confidence 23221 1478999999998877665543 45667655544
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.59 Score=48.22 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViL 184 (434)
|++|||||.|-.|..+++.+++. |++|++.+....... ....+..... ...| +.+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa-~~~ad~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPA-AQVADEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCch-hHhCceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 999877655322211 1112222210 1223 5567788998743
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.5 Score=49.38 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC-CCcCCHHhhhccCCEEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~Ea~~~ADiViL 184 (434)
+++|||||-|-.|.-|+..-+.- |+++++.+.. +.+-....+......+ +....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 38999999999999999988887 9998765432 3222222222222100 001136678888998853
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.1 Score=47.23 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHH--cCccccCCCcCCHHhhhccCCEEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+++ ++|.|+|.|..|.+.|+-|.+. |++|.+.+..... ..+..++ .|+....+ ....+...+.|+||.
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILAL 73 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEEE
Confidence 456 8999999999999999999999 9988766544322 1222222 36543111 112334568999998
Q ss_pred e
Q 013877 185 L 185 (434)
Q Consensus 185 a 185 (434)
.
T Consensus 74 s 74 (445)
T PRK04308 74 S 74 (445)
T ss_pred C
Confidence 5
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.74 Score=48.10 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHH----HHH-HcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
||.|||+|-.|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.++++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEEC
Confidence 589999999999999999999 9998776654332111 122 2476531 11224567889988775
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.8 Score=42.52 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=69.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ccccCC-CcCCHHhhhcc
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG-TLGDIYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~-~~~~~~Ea~~~ 178 (434)
..++. .||.|+|.|+.|.|.|..+..+ |+ ++.+.+-...+..-++.+.. |...-. ....--.+-++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34555 8999999999999999998877 66 44333333222222222221 221000 01112245678
Q ss_pred CCEEEEeecchHH------------HHHHHHHHhcC---CCCcEEE-Eeccchh-hhhhcccccCCCCccEEEeccCCCh
Q 013877 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 179 ADiViLavpd~a~------------~~vl~eI~~~L---k~g~iL~-~s~G~~i-~~~~~~~i~~~~di~VI~v~Pn~pg 241 (434)
+++||+..-..+. .++++.|.|.+ .|+++|. .+..+.+ .|..-..-.+|++ +||..-.|--.
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGcnLDs 167 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGCNLDS 167 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCcCccH
Confidence 9999998654332 24555666543 6777765 4444443 2332222345555 66655554433
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.82 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (434)
++|+|||+|++|..+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 3899999999999999999773
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.46 E-value=2.2 Score=43.07 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=55.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrd-s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.| .+|.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ...+..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 36 899999999999988877765 3 3 356555544 34456666655431 1122222 4799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++........+++....++++..+++
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 88743233455566667888776553
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.44 E-value=4.4 Score=41.96 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=54.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcE-EEEEe--cCCchhHHHHHHcCc--cccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGL--RKGSRSFAEARAAGF--TEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~-Vivg~--r~~~~s~~~A~~~G~--~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
++|||+| .|..|.-+.+.|.++ .+-+. +.+.. |+..+. ...-.|. ...+ .+. .....++.|++|.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~--~~~f~~~~~~v~~-~~~-~~~~~~~~Divf~~ 73 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKK--YIEFGGKSIGVPE-DAA-DEFVFSDVDIVFFA 73 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCc--cccccCccccCcc-ccc-cccccccCCEEEEe
Confidence 7899998 699999999999886 11222 22222 221121 1111222 1100 001 12345589999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.+.....++.++.. +.|.+|++.++.
T Consensus 74 ag~~~s~~~~p~~~---~~G~~VIdnsSa 99 (334)
T COG0136 74 AGGSVSKEVEPKAA---EAGCVVIDNSSA 99 (334)
T ss_pred CchHHHHHHHHHHH---HcCCEEEeCCcc
Confidence 99888877777654 467888877764
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.1 Score=46.31 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..+++..+..- |.+|.+...+. +...+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999997 7888888888776 88876654332 11122 2333453210 146889999
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.9 Score=43.70 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 467888 9999999999999999999998
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.5 Score=46.01 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds 133 (434)
...|+. .+|.|||+|-.|..+|++|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 366788 9999999999999999999988
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.4 Score=45.61 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhH----HHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| .||++||-+ ++..+++..+..- |.++.+...+. .... +.+++.|.... ...+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 999999986 7899999888876 88877654332 1112 23344563221 146899999
Q ss_pred ccCCEEEEe
Q 013877 177 SGSDLVLLL 185 (434)
Q Consensus 177 ~~ADiViLa 185 (434)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999875
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.3 Score=45.99 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcC---ccccCCCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G---~~~~~~~~~~~~Ea~~~ 178 (434)
.++| .||++||-+ ++..+++..+..- |.+|.+...+. ....+.+++.| +.. ..+++|++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4788 999999975 6788888877776 88876654332 22334455544 232 5688999999
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.5 Score=42.64 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhh------cc-CCE
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~------~~-ADi 181 (434)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........| +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 5889997 99999999999998 999988888644321 1222110111222 33455 45 899
Q ss_pred EEEeecc
Q 013877 182 VLLLISD 188 (434)
Q Consensus 182 ViLavpd 188 (434)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988874
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.1 Score=46.68 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=54.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-hhhhhcCCcE---EEEEe--cCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrd-s~~~~~~G~~---Vivg~--r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.||||||. |..|.-+.+-|.+ . .++ +.... +...+....... ..... ..+.+ ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999996 9999999998874 4 444 32222 122222211111 11110 12333 4478999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++..+.. +.|..|++.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777776643 468888877663
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.59 Score=48.10 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
|++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 47899999999999999999998 99998877653
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.2 Score=45.55 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 013877 113 QIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds 133 (434)
||.|||+|-.|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.41 E-value=1 Score=43.94 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=55.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-----hccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-----~~~ADiV 182 (434)
.|++|||.||+|.-+.-.+.++ |- .+.||.++.+.-...|.+.|+.... ...+-+ .++-|+|
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~tt~---egv~~ll~~p~~~di~lv 75 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVATTH---EGVIGLLNMPEFADIDLV 75 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcchh---hHHHHHHhCCCCCCcceE
Confidence 5899999999999988777766 42 5678888888878888888876311 111111 2345699
Q ss_pred EEeecchHHHHHHHHH
Q 013877 183 LLLISDAAQADNYEKI 198 (434)
Q Consensus 183 iLavpd~a~~~vl~eI 198 (434)
|=+++..++.+-...+
T Consensus 76 fdatsa~~h~~~a~~~ 91 (310)
T COG4569 76 FDATSAGAHVKNAAAL 91 (310)
T ss_pred EeccccchhhcchHhH
Confidence 9999988887654433
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=88.31 E-value=2.1 Score=47.64 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EE--EEEecCCc------hhHHHHHHc--Ccc--ccCC-CcCCHHh
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EENG-TLGDIYE 174 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~V--ivg~r~~~------~s~~~A~~~--G~~--~~~~-~~~~~~E 174 (434)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. ..+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999999 87 33 22232222 234555551 211 1011 1345778
Q ss_pred hhccCCEEEEeecchHHHH
Q 013877 175 TISGSDLVLLLISDAAQAD 193 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~ 193 (434)
+++..|+|++.+-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999888665543
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.9 Score=43.63 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=29.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
+.++. .+|.|||+|-.|..+|+||..+ |+ ++.+.+
T Consensus 15 ~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 15 KKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 55667 8999999999999999999988 87 454444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.3 Score=38.21 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 556 89999996 89999999999988 99987766653
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=2.1 Score=43.67 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=45.8
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.++| +||++||- +++..|++..+..- |+++.+...++-.... . ..+.. ..++.|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999998887 8887765443211000 0 01222 568999999999987
Q ss_pred Ee
Q 013877 184 LL 185 (434)
Q Consensus 184 La 185 (434)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=88.15 E-value=3.1 Score=43.76 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---------CccccCCC----cCCHHhhh
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYETI 176 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~~----~~~~~Ea~ 176 (434)
+.++|.|||+| .|.+...-|+.. +..-++..+.++...+.|+.. ++. +.. ..|..+.+
T Consensus 150 ~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~fL 220 (374)
T PRK01581 150 DPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHHH
Confidence 33899999998 455544444433 333345566667777777752 111 000 23333332
Q ss_pred ----ccCCEEEEeecchHH--------HHHHHHHHhcCCCCcEEEEecc
Q 013877 177 ----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 177 ----~~ADiViLavpd~a~--------~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 346999999886422 4577788999999998765444
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.95 Score=46.58 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.1
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcE---EEEEecC--CchhHHHHHHcCccccCCCcCCH-HhhhccCCEEEEe
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~---Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViLa 185 (434)
||+||| .|..|..+.+-|.+. ++. +.+..+. ..+... ..|... .+.+. .+.++++|+||+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999998876 663 2222222 122221 112110 01111 2345889999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99988887776553 457777777663
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.2 Score=46.99 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+.... ....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~~---g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIYI---GHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEeC---CCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 999877664433333344555765411 1223456789998874
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.3 Score=46.60 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHH--cCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-.|.|||+|-.|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+|++.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 4799999999999999999998 9998776654322 2222333 26543100 1124556789988774
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=88.05 E-value=5.6 Score=33.04 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH----HcCccccCCCcCCH----HhhhccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDI----YETISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~----~Ea~~~AD 180 (434)
.+ ++|.-||+|.= .++..+.+... +.+| ++.+.+....+.++ ..+.....-...+. ....+..|
T Consensus 19 ~~-~~vldlG~G~G--~~~~~l~~~~~----~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSG--SITIEAARLVP----NGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCC--HHHHHHHHHCC----CceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 78999999993 33444443310 2244 56666554444443 23321000001121 12335789
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+|++.-++....++++.+.+.|+||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999987653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.3 Score=42.84 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHH----HHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.++| .||++||- .++..+++..+..- |.+|.+...+. ....+.+ ...|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4788 99999997 47888888888776 88877654332 1222333 23453210 1468899999
Q ss_pred cCCEEEEe
Q 013877 178 GSDLVLLL 185 (434)
Q Consensus 178 ~ADiViLa 185 (434)
++|+|..-
T Consensus 222 ~aDvvy~~ 229 (338)
T PRK02255 222 DADFVYTD 229 (338)
T ss_pred CCCEEEEc
Confidence 99999983
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.9 Score=42.54 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc-CCHHhhh------ccCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~Ea~------~~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |.++++..+......+.|++.|+..-+... .+..+.+ ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 46 8999999999999999888887 887555544445568888888874211101 1222222 24799
Q ss_pred EEEeecchHH-----------HHHHHHHHhcCCCCcEEEE
Q 013877 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 182 ViLavpd~a~-----------~~vl~eI~~~Lk~g~iL~~ 210 (434)
||-++-.... ...+++....+++|-.|++
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 9998875421 1345555566777766554
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.8 Score=45.76 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.2
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcC
Q 013877 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (434)
Q Consensus 107 ~~~g~kkIgIIG~-----G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (434)
.++| +||+|+|- | ++..+++..+..- |.+|.+.-.++ +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4678 89999985 4 6678888887776 88887765432 222233 344553210 146
Q ss_pred CHHhhhccCCEEEEee
Q 013877 171 DIYETISGSDLVLLLI 186 (434)
Q Consensus 171 ~~~Ea~~~ADiViLav 186 (434)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=2.2 Score=47.62 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=49.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (434)
-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 356 8999999999999999999998 998887765321 1134445566543211
Q ss_pred Cc----CCHHhhhccCCEEEEeecc
Q 013877 168 TL----GDIYETISGSDLVLLLISD 188 (434)
Q Consensus 168 ~~----~~~~Ea~~~ADiViLavpd 188 (434)
+. .+.++.....|.||+++--
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcCC
Confidence 11 1234444569999998753
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.81 E-value=6 Score=36.97 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhh-----hccCCE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea-----~~~ADi 181 (434)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. ....+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 356 8999999999999999888887 8887655544 344556666654210 1001122222 246899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+.+++.. ..+..+...|+++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2333444555565555433
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.79 E-value=3.7 Score=42.35 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC---HHhhhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~---~~Ea~~~ADiViL 184 (434)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|.... + ..+ +.+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 46 8999999999999999988888 88876665544444667777776320 0 011 1222345799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
++.... .+......++++..++
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEE
Confidence 886432 2333334555655554
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.65 E-value=3.4 Score=43.30 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=54.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------chhHHHHHH---c-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEARA---A- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~~---~- 160 (434)
...|+. .+|.|||+|-.|..++++|..+ |+ ++++.+.. . .+....++. .
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 76 33333221 0 011111111 1
Q ss_pred -Cccc--cCCCc--CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~~--~~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
.+.. ....+ .+..+.+.+.|+||.|+-+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 00111 124567899999999988777777776643
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=87.63 E-value=2.2 Score=45.71 Aligned_cols=74 Identities=26% Similarity=0.236 Sum_probs=48.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~ 166 (434)
.-.+ ++|.|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3456 8999999999999999999998 998877754321 112344556764311
Q ss_pred CC-c---CCHHhhhccCCEEEEeec
Q 013877 167 GT-L---GDIYETISGSDLVLLLIS 187 (434)
Q Consensus 167 ~~-~---~~~~Ea~~~ADiViLavp 187 (434)
++ + .+.++.....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~VilAtG 237 (485)
T TIGR01317 213 NTEIGVDISADELKEQFDAVVLAGG 237 (485)
T ss_pred CCEeCCccCHHHHHhhCCEEEEccC
Confidence 11 1 122334456899999875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=1.9 Score=44.59 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| .||++||= +++..+++..|... .|.++.+...+ +....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999998 58899988876533 17777665433 2233455555554321 146889999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.60 E-value=1.7 Score=44.31 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=53.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+.... .+..|.+... + +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~aTVtvchs---~----------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKADG--GNATVTVCHS---R----------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCccC--CCCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999977 7899999988653000 0235655422 1 23567889999999998
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+--.. ++. ..++|+|++|+++
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDv 232 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDV 232 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEc
Confidence 87433 222 2457899988875
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=87.58 E-value=2 Score=39.08 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=48.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---HhhhccCCEEEEeecch
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---~Ea~~~ADiViLavpd~ 189 (434)
++.|+|.|..|..++..|++. |++++-..+.+.... ...-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 998765555432211 111245543 2233 33344568899999754
Q ss_pred HH-HHHHHHHHh
Q 013877 190 AQ-ADNYEKIFS 200 (434)
Q Consensus 190 a~-~~vl~eI~~ 200 (434)
.. .++++.+..
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 44 456555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.6 Score=46.13 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=51.9
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc--CccccCCCcCCHHhh
Q 013877 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (434)
Q Consensus 108 ~~g~kkIgIIG~G----------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~Ea 175 (434)
++| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... +... ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 3455566677776 9898766543 23333322 1332 5689999
Q ss_pred hccCCEEEEeecchHHHHH
Q 013877 176 ISGSDLVLLLISDAAQADN 194 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~v 194 (434)
++.||+|++++-.+...++
T Consensus 374 ~~~aDaivi~tew~ef~~~ 392 (414)
T COG1004 374 LKGADAIVINTEWDEFRDL 392 (414)
T ss_pred HhhCCEEEEeccHHHHhcc
Confidence 9999999999998887754
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.9 Score=45.95 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.-.+ ++|.|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 3467 8999999999999999999998 9988877653
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=2 Score=47.14 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=48.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCccccCCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (434)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.+. +..+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 998877654321 12344556665421111
Q ss_pred -c---CCHHhhhccCCEEEEeec
Q 013877 169 -L---GDIYETISGSDLVLLLIS 187 (434)
Q Consensus 169 -~---~~~~Ea~~~ADiViLavp 187 (434)
+ .+.++.-...|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 123444457899999986
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.1 Score=47.43 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi 144 (434)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 46889 9999999999999999999988 98876
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.8 Score=45.44 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=43.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+.+ ++|.|||+|-.|.+.++-|++. |++|.+.+...... .+. .+.|+.... -....+.++..|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~--~~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHT--GSLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEe--CCCCHHHhcCCCEEEEC
Confidence 346 8999999999999999988888 99887655432221 122 233654311 01223456778876654
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=87.15 E-value=2 Score=43.82 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| .||++||-+ ++..+++..+.... |.++.+...+. ....+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 4788 999999976 57899988876531 67776654322 233455555554321 146899999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999984
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=5.2 Score=38.02 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=29.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |++.|+|. |-+|.++|+.|.+. |.+|++..+.
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~ 40 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNS 40 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCC
Confidence 567 99999995 79999999999998 9988766554
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.95 E-value=4.5 Score=42.19 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC------H----Hhhhc-cCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD------I----YETIS-GSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~------~----~Ea~~-~AD 180 (434)
.+++|+|+|-+|.|-.++++.. |-..|++.+.+....+.|++.|.+. +.+ + .++.. .+|
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCCCCC
Confidence 6899999999999999999988 7766788887777789999999863 222 2 22333 689
Q ss_pred EEEEeecchH
Q 013877 181 LVLLLISDAA 190 (434)
Q Consensus 181 iViLavpd~a 190 (434)
..|-++-...
T Consensus 257 ~~~e~~G~~~ 266 (366)
T COG1062 257 YAFECVGNVE 266 (366)
T ss_pred EEEEccCCHH
Confidence 9998887654
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=3.3 Score=44.27 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=53.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| ++|.|||-|.++..=++.|.+. |-+|+|.-..-.+......+.| +...... .. .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGP-FD-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CC-hHHhCCCEEEEE
Confidence 46889 9999999999999999999988 8777665433222222222333 2211111 12 345689999999
Q ss_pred eecchHHHHH
Q 013877 185 LISDAAQADN 194 (434)
Q Consensus 185 avpd~a~~~v 194 (434)
||.|....+-
T Consensus 79 at~d~~~n~~ 88 (457)
T PRK10637 79 ATDDDAVNQR 88 (457)
T ss_pred CCCCHHHhHH
Confidence 9999877643
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=2 Score=45.85 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.++| +||++||- +++..+++..+...+ |.+|.+...++ +...+.+.+.|.... ...+++|++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3788 99999998 488999998876421 77776654332 223345555564321 146899999999
Q ss_pred CEEEEee
Q 013877 180 DLVLLLI 186 (434)
Q Consensus 180 DiViLav 186 (434)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999844
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.2 Score=45.14 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=65.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcC-CcEEEEEecCCchhHHHHHHcC-----ccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.-..|+|.|.|+..+...-.+. .. =.+|.+++|....+.+.|...- +..+-....+.+++++.+|+|+-+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~a 214 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGA 214 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEec
Confidence 3578999999999887665543 11 1278899998887777776321 111111245678999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccchhh
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~ 217 (434)
++...-. + ....++||+.|-.+.+|..+
T Consensus 215 tlstePi-l---fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 215 TLSTEPI-L---FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred cccCCce-e---eeeeecCCceEeeeccCCch
Confidence 8853211 1 12457899988888888643
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=5.6 Score=37.80 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++| ++|-|+|. |-+|.++++.|.+. |++|++..|.
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4678 99999998 89999999999998 9988776664
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=6.5 Score=36.31 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+..
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAA 42 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 99999995 89999999999988 998877766533
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=7 Score=36.41 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.1
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999997 67999999999998 999887777644
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.37 E-value=3.7 Score=41.31 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=36.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCC
Confidence 46 8999999999999999998888 8887654444 445677787776
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.35 E-value=5.1 Score=40.67 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-cCCHHhhhccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~Ea~~~ADiViLav 186 (434)
.| .++.|+|.|.+|...++-++.. |.+|++..+.+.+....+++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 56 8999999999999999888887 88776665554443344455676310 000 001122233579999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.... .++.....++++..++.
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLIL 273 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEE
Confidence 7432 33334455666665543
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.30 E-value=2.6 Score=41.48 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH--HHHHH-cC------ccccCCC-cCCHHhhhc
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~~~~-~~~~~Ea~~ 177 (434)
+| ++|.|.| .|-+|..+++.|.+. |++|++..|...... ..... .+ +...|-. .....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999999 998876666533211 11111 11 1110100 123556788
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
+.|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999988764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=2.9 Score=39.79 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|..
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 567 99999995 79999999999998 99987777653
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=86.16 E-value=6.2 Score=39.88 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCcccc-CCCcCCHHh----hh--ccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~E----a~--~~AD 180 (434)
.| ++|.|+|.|.+|...++-++.. |.+ |+ ..+.+.+..+.+++.|...- +....+..+ .. ...|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi-~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKII-AVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999888887 875 54 44444556778888876310 101112222 22 1479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+-++... ..+......++++..+++.
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 999888742 2233333456666655533
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.15 E-value=5 Score=38.64 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---Hhhhc-------
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---~Ea~~------- 177 (434)
++ ++|.|.|. |-+|.++++.|.+. |++|++..|..++ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 35 88999995 79999999999988 9998776665333 3323233332110012232 23333
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799988764
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=85.99 E-value=5.6 Score=39.51 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCcccc-CCCcCCHH---hhhc--cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~---Ea~~--~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |.+ |++..+ +++..+.+++.|.... +....+.+ +... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~-~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDP-SPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988887 887 665444 3445677788886320 10001111 2222 5799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9988876543 222233455555544
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.8 Score=46.52 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
..++| ++|+|.|+|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 36899 9999999999999999999998 988765333
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=85.96 E-value=2.6 Score=43.99 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=47.0
Q ss_pred ccCCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcC
Q 013877 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (434)
.++| +||+|+|.| ++..+++..+..- |.+|.+...++ +...+. +++.|.... ...
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4678 899999853 4457777777766 88877765432 222233 334554310 146
Q ss_pred CHHhhhccCCEEEEee
Q 013877 171 DIYETISGSDLVLLLI 186 (434)
Q Consensus 171 ~~~Ea~~~ADiViLav 186 (434)
+++|++++||+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=3.1 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 79999999999998 99987777653
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=85.84 E-value=5.9 Score=37.90 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=55.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCCCcCCHHhh--hccCCEEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea--~~~ADiViL 184 (434)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++. +.+.+..+.+++.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~-~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGV-DPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-CCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999998888877 877 6544 4334446677777721 1111111111 135799998
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
++.... .+.+....++++..++.
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVL 188 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEE
Confidence 876432 33444556666665543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=4.2 Score=39.11 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 456 89999996 78999999999998 99987776653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=4.2 Score=38.82 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.2
Q ss_pred cccccCCCCEEEEEcc-c-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 104 LPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~-G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
....+++ +++.|.|. | -+|.++++.|.+. |++|++..+.
T Consensus 11 ~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 11 GHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred cccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3456778 99999997 6 5999999999998 9998776654
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.6 Score=48.30 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|...+
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 34456 89999995 89999999999998 9998877776443
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=85.67 E-value=3.2 Score=42.03 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-HH--Hc---C--ccccCC-CcCCHHhh
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR--AA---G--FTEENG-TLGDIYET 175 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-A~--~~---G--~~~~~~-~~~~~~Ea 175 (434)
..+++ ++|.|.|. |-+|..+++.|.+. |++|++..|...+.... .. .. . +...|- ...+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34567 99999997 99999999999999 99987666653321111 11 11 1 111110 01234567
Q ss_pred hccCCEEEEeecc
Q 013877 176 ISGSDLVLLLISD 188 (434)
Q Consensus 176 ~~~ADiViLavpd 188 (434)
++.+|+||.+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8889999988753
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=85.63 E-value=2.4 Score=43.04 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.++| .||++||- .+...+++..+..- |.+|.+...+. ....+. +.+.|.... ...+++++++
T Consensus 145 ~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~ 215 (304)
T TIGR00658 145 KLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVK 215 (304)
T ss_pred CCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhC
Confidence 3778 99999996 68888988888876 88877654322 112222 344553210 1468999999
Q ss_pred cCCEEEEe
Q 013877 178 GSDLVLLL 185 (434)
Q Consensus 178 ~ADiViLa 185 (434)
+||+|...
T Consensus 216 ~aDvvy~~ 223 (304)
T TIGR00658 216 GADVIYTD 223 (304)
T ss_pred CCCEEEEc
Confidence 99999985
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=85.55 E-value=6.1 Score=40.23 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=54.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc-----cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-----~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++. ..++...+.+++.|.... +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAV-DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 8999999999999999888887 88 46544 444555778888886320 100112222221 4799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
||-++.... .+......++++..++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 998886422 2223333455555444
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=85.34 E-value=4.6 Score=38.38 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++| |+|.|+|. |.+|.++|+.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 5678 99999995 89999999999988 9888776554
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=2.3 Score=45.60 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
..++| ++|+|.|+|+.|...|+.|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 46889 9999999999999999999988 887765433
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=4.8 Score=40.26 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhh---hc--cCC-E
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET---IS--GSD-L 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea---~~--~AD-i 181 (434)
.| ++|.|.|.|.+|...++-++.. |.++++.........+.+++.|.... +....+.++. .. ..| +
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 46 8999999999999999988888 88644444443444667777775310 0000111111 11 346 7
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+-++.... .+.+....++++..++
T Consensus 233 v~d~~G~~~---~~~~~~~~l~~~G~iv 257 (347)
T PRK10309 233 ILETAGVPQ---TVELAIEIAGPRAQLA 257 (347)
T ss_pred EEECCCCHH---HHHHHHHHhhcCCEEE
Confidence 777777532 2333334455655544
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=85.20 E-value=1.4 Score=46.02 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=41.7
Q ss_pred hhcccccchhhccCCc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 84 ISLADRDEYIVRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 84 ~~~~~~~e~~~~~~~~--~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.+|+..+|..+.+.-| -|.++ ..... ..|.|||.|..|...|..|.+. .|++|.+..+.
T Consensus 65 ~~f~~~~e~~is~~i~~~~~~~l-~~~~~-~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~ 125 (357)
T PLN02661 65 FKFAPIKESIVSREMTRRYMTDM-ITYAD-TDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQS 125 (357)
T ss_pred ccceechhhHhhccchHhHhhhh-hhccc-CCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecC
Confidence 4677777877776655 24444 33444 5799999999999999999753 16787776553
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=3.5 Score=38.56 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ +++.|.|. |.+|..+++.|.+. |++|++..|..
T Consensus 7 ~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 7 FSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred cCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 667 89999997 79999999999998 99887766653
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.1 Score=44.97 Aligned_cols=67 Identities=28% Similarity=0.298 Sum_probs=43.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH----HHHHHcCccccCCCcCC---HHhhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLa 185 (434)
||.|||.|..|.+.|+.|.+. |+.|.+.++...... ...++.|+...-+...+ ..+...+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 799999999999999999999 999877665432212 12334576431111111 11356788998883
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=85.04 E-value=2.7 Score=34.68 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC----cccc-CCCcCCH---HhhhccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEE-NGTLGDI---YETISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~-~~~~~~~---~Ea~~~AD 180 (434)
+| .+|.-||+|.-..++...-+.. +.+| ++.+.++...+.|++.- .... .-...+. .+...+.|
T Consensus 1 p~-~~vLDlGcG~G~~~~~l~~~~~------~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 72 (112)
T PF12847_consen 1 PG-GRVLDLGCGTGRLSIALARLFP------GARV-VGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFD 72 (112)
T ss_dssp TT-CEEEEETTTTSHHHHHHHHHHT------TSEE-EEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEE
T ss_pred CC-CEEEEEcCcCCHHHHHHHhcCC------CCEE-EEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCC
Confidence 45 7899999998444443322224 6675 57777676666665432 1100 0001233 34455789
Q ss_pred EEEEee-----cc--hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLI-----SD--AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLav-----pd--~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|++.- -. ....++++.+...|+||..+++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 998866 11 23356788899999999877643
|
... |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.00 E-value=2.2 Score=45.21 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
.|+| ++|+|=|+||.|.-.|+.|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 988877665533
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=5 Score=38.52 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+++ +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999996 78999999999998 99988776653
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=84.85 E-value=1.4 Score=43.08 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+|.|||.|.-|.+.|..|++. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 699999999999999999999 99999888753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.56 E-value=5.2 Score=39.36 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHh-hhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E-a~~~ADiViLavp 187 (434)
+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.+.+
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcCC
Confidence 45 7999999999999999888877 88876655553 4456667777532 111111 2235688888765
Q ss_pred chHHHHHHHHHHhcCCCCcEEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.. ..++++...++++..++.
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEE
Confidence 43 345556666766665553
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.54 E-value=5.9 Score=40.61 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=47.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ ++...+.+++.|...- +... .+..+.+. ..
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGVDI-NPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEEcC-ChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999988887 87 4654444 4455788888886310 1000 01222222 47
Q ss_pred CEEEEeecch
Q 013877 180 DLVLLLISDA 189 (434)
Q Consensus 180 DiViLavpd~ 189 (434)
|+||-++-..
T Consensus 270 dvvid~~G~~ 279 (381)
T PLN02740 270 DYSFECAGNV 279 (381)
T ss_pred CEEEECCCCh
Confidence 8998888743
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=84.47 E-value=4.3 Score=38.32 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |+|.|.|. |.+|.++|+.|.+. |++|++..|.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~ 37 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADID 37 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecC
Confidence 467 89999996 79999999999998 9988776654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.44 E-value=4.7 Score=38.63 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.3
Q ss_pred cCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+
T Consensus 5 l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN 42 (252)
T ss_pred cCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc
Confidence 677 999999985 7999999999998 9998877664
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=84.26 E-value=5.7 Score=37.73 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=41.3
Q ss_pred EEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCchhHH--------HHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vivg~r~~~~s~~--------~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
||+|||.|+.-.+. ...+....++- .+-++. -.+.++...+ ..++.|....=....|.+|++++||+||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l-~~~ei~-L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEEL-SGSEIV-LMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTS-TEEEEE-EE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccC-CCcEEE-EEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 79999999986663 22222221110 011444 4444443222 2233443211122578999999999999
Q ss_pred EeecchHHHH
Q 013877 184 LLISDAAQAD 193 (434)
Q Consensus 184 Lavpd~a~~~ 193 (434)
+.+-..-...
T Consensus 79 ~~irvGg~~~ 88 (183)
T PF02056_consen 79 NQIRVGGLEA 88 (183)
T ss_dssp E---TTHHHH
T ss_pred EEeeecchHH
Confidence 9998776653
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=84.07 E-value=4.3 Score=40.54 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=56.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCcccc-CCCcCCHHhh-hccCCE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEE-NGTLGDIYET-ISGSDL 181 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~-~~~~~~~~Ea-~~~ADi 181 (434)
..| ++|.-||||+-..+ ..+... |..-+++.+.++...+.|++ .++... .....+.... -...|+
T Consensus 158 ~~g-~~VLDvGcGsG~la--i~aa~~------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 158 LKD-KNVIDVGCGSGILS--IAALKL------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred CCC-CEEEEeCCChhHHH--HHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 456 89999999993334 344444 54334677776665555554 232100 0001111111 236799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+..........+++++...|+||..++++
T Consensus 229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 229 IVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred EEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 987666555567888889999999877644
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=83.92 E-value=1.6 Score=43.46 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi 144 (434)
..++| +||+|.|+|++|...|+.|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56789 9999999999999999999988 98876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=3.6 Score=39.06 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++| |++-|.|. |-+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999997 68999999999998 9998777664
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.78 E-value=4.2 Score=38.60 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++| |+|.|.|. |.+|.++++.|.+. |++|++..|.
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD 43 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4678 99999995 89999999999998 9998776665
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=83.62 E-value=5 Score=38.71 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-HHcCcccc-----------CC----CcCCH
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-----------NG----TLGDI 172 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-----------~~----~~~~~ 172 (434)
++ .+|-++|||.- .-+.-|.+. |++| ++.+..+...+.+ .+.|.... .. ...|.
T Consensus 37 ~~-~rvL~~gCG~G--~da~~LA~~------G~~V-~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 37 AG-SRVLVPLCGKS--LDMLWLAEQ------GHEV-LGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CC-CeEEEeCCCCh--HhHHHHHhC------CCeE-EEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 45 79999999984 345556677 9987 5777766656654 33443210 00 01122
Q ss_pred Hhh----hccCCEEE-----EeecchHHHHHHHHHHhcCCCCcE-EEEeccc
Q 013877 173 YET----ISGSDLVL-----LLISDAAQADNYEKIFSCMKPNSI-LGLSHGF 214 (434)
Q Consensus 173 ~Ea----~~~ADiVi-----Lavpd~a~~~vl~eI~~~Lk~g~i-L~~s~G~ 214 (434)
.+. ....|.|+ .++|+......++.|...|+||.+ +.+++.+
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 111 12346666 788888888899999999999975 3444433
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.57 E-value=2.9 Score=48.86 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=50.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---c-----------------hhHHHHHHcCccccC--
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S-----------------RSFAEARAAGFTEEN-- 166 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~---~-----------------~s~~~A~~~G~~~~~-- 166 (434)
+| |||+|||.|.-|.+-|..|.+. |++|+|..+.. . +..+..++.|+....
T Consensus 305 ~g-kkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~ 377 (944)
T PRK12779 305 VK-PPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNF 377 (944)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeE
Confidence 57 9999999999999999999999 99988876532 0 123345556664210
Q ss_pred --CCcCCHHhhhc-cCCEEEEeecc
Q 013877 167 --GTLGDIYETIS-GSDLVLLLISD 188 (434)
Q Consensus 167 --~~~~~~~Ea~~-~ADiViLavpd 188 (434)
+...+.++..+ ..|.|||++--
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCCC
Confidence 11124566654 68999999753
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.55 E-value=3.6 Score=45.98 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 106 ~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
..++| ++|.|+| .|.+|.++++.|.+. |.+|++..|..++
T Consensus 418 ~~l~g-k~vLVTGasggIG~~la~~L~~~------Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAG-KVALVTGAAGGIGKATAKRLAAE------GACVVLADLDEEA 458 (681)
T ss_pred cCCCC-CEEEEecCCCHHHHHHHHHHHHC------cCEEEEEeCCHHH
Confidence 45678 9999999 599999999999998 9988777776443
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=83.51 E-value=2.5 Score=33.56 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+|.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999998 98888776653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=6.8 Score=41.62 Aligned_cols=94 Identities=13% Similarity=0.051 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| +||+|.|+ .+-+..++..|++. |.+|.+++..-. .....+..|... . + ..++
T Consensus 311 ~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~~----~-~-~~~~ 376 (425)
T PRK15182 311 NVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGIIP----V-S-EVKS 376 (425)
T ss_pred CCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCccc----c-h-hhhh
Confidence 4688 99999998 57788899999988 998876653211 111112334321 1 1 2357
Q ss_pred ccCCEEEEeecchHHHHH-HHHHHhcCCCCcEEEEeccc
Q 013877 177 SGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~v-l~eI~~~Lk~g~iL~~s~G~ 214 (434)
++||+|++++.-....++ ++.+...++...+|++.-+.
T Consensus 377 ~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 377 SHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred cCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 789999999998777643 55666666644577775543
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.49 E-value=5.9 Score=39.48 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC-HHhhhccCCEEEEee
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~-~~Ea~~~ADiViLav 186 (434)
+| .+|.|.|.|.+|.+.++-++.. |.+|++..+. .+..+.+.+.|...- +....+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 46 7999999999999999888887 8887665544 344566666675310 000001 112234679999988
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+... .+.+....++++..++
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v 260 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLV 260 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEE
Confidence 8652 2334445555555444
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.26 E-value=13 Score=36.56 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=35.5
Q ss_pred CCccccccccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 97 GRDLFNLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 97 ~~~~f~~~~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
+.|..... ..++| ++|.|.|. |-+|.++|+.|.+. |++|++..|..
T Consensus 4 ~~~~~~~~-~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~ 50 (306)
T PRK06197 4 TKWTAADI-PDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNL 50 (306)
T ss_pred CCCCcccc-ccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 34544333 45788 99999995 89999999999998 99887777653
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=83.20 E-value=4.3 Score=41.94 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=45.6
Q ss_pred c-CCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCcEEEEEec-CC----chhHHH----HHHcCccccCCCcC
Q 013877 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (434)
Q Consensus 108 ~-~g~kkIgIIG~G-------~mG~A~A~nLrds~~~~~~G~~Vivg~r-~~----~~s~~~----A~~~G~~~~~~~~~ 170 (434)
+ +| .||+|++.| ++..+++..+..- |.+|.+... +. ....+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 78 899776543 6788888877766 888877654 21 111222 334453211 146
Q ss_pred CHHhhhccCCEEEEee
Q 013877 171 DIYETISGSDLVLLLI 186 (434)
Q Consensus 171 ~~~Ea~~~ADiViLav 186 (434)
++.|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8899999999999854
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.92 E-value=3.8 Score=40.09 Aligned_cols=62 Identities=27% Similarity=0.245 Sum_probs=43.1
Q ss_pred EEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchHHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 145 VGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 145 vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
++++..++..+.+...|... +.+++|++ .+.|+|++|+|+..+.++..++. +.|+ +++.+.|
T Consensus 7 V~D~~~e~a~~~a~~~g~~~----~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL---~aGkhVl~~s~g 70 (229)
T TIGR03855 7 VYDRNPKDAKELAERCGAKI----VSDFDEFLPEDVDIVVEAASQEAVKEYAEKIL---KNGKDLLIMSVG 70 (229)
T ss_pred EECCCHHHHHHHHHHhCCce----ECCHHHHhcCCCCEEEECCChHHHHHHHHHHH---HCCCCEEEECCc
Confidence 34444455556666677653 57888876 67999999999999998887654 3454 5565555
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=82.87 E-value=6.7 Score=39.26 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHH----hhh--ccCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----Ea~--~~ADi 181 (434)
+| ++|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999888877 88534445444556778888886310 10011211 122 24799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+-++... ..+.+..+.++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 98887743 23344445565655544
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.83 E-value=13 Score=37.43 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCC---HHhhhccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGD---IYETISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~---~~Ea~~~AD 180 (434)
.+ ++|.|.| .|-+|..+++.|.+. |++|++..|...+....... ..+......+.+ ..+++++.|
T Consensus 9 ~~-~~vLVtG~~GfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (353)
T PLN02896 9 AT-GTYCVTGATGYIGSWLVKLLLQR------GYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCD 81 (353)
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCC
Confidence 45 8999999 699999999999998 99987666653322211111 112110111222 346677889
Q ss_pred EEEEeec
Q 013877 181 LVLLLIS 187 (434)
Q Consensus 181 iViLavp 187 (434)
+||-+..
T Consensus 82 ~Vih~A~ 88 (353)
T PLN02896 82 GVFHVAA 88 (353)
T ss_pred EEEECCc
Confidence 8887764
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=82.76 E-value=7.1 Score=37.49 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-HHcCcccc-----------CC----CcCCH
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-----------NG----TLGDI 172 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-----------~~----~~~~~ 172 (434)
.+ .+|-++|||.- .-|.-|.+. |++| ++.+..+...+.+ .+.|.... .. .+.|.
T Consensus 34 ~~-~rvLd~GCG~G--~da~~LA~~------G~~V-~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 34 AG-ARVFVPLCGKS--LDLAWLAEQ------GHRV-LGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CC-CeEEEeCCCch--hHHHHHHhC------CCeE-EEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 55 79999999984 445566777 9997 4777655555553 33333100 00 01222
Q ss_pred Hhh----hccCCEEE-----EeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 173 YET----ISGSDLVL-----LLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 173 ~Ea----~~~ADiVi-----Lavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+. ...-|.|+ +++|+..-...++.+...|+||.++.
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 111 12235544 57788777788889999999998543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 434 | ||||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 1e-177 | ||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 1e-177 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 5e-22 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 4e-09 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 4e-09 |
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 434 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 1e-169 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 3e-09 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 3e-47 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 7e-43 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 1e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 485 bits (1250), Expect = e-169
Identities = 311/356 (87%), Positives = 335/356 (94%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRI 427
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTR+
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRM 370
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 10/107 (9%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+D+ G ++ + + G + +V ++ + +G+ +
Sbjct: 383 ENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFM 442
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG 405
++ S + K Y + + + V + I +++
Sbjct: 443 VDNCSTTARLGSRKWAPRFDYILTQ---QAFVTVDKDAPINQDLISN 486
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 3e-47
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
TT + E +D+FGE+ +L G +V++ F E G ++AY EC+ +I
Sbjct: 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
++ G+ + S S
Sbjct: 235 VDLMYEGGIANMNYSIS 251
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 7e-43
Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A ++ E +SD+ GE+ IL G + F + E G + A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 343 TGIISKII 350
G + I
Sbjct: 256 FGW--ETI 261
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 6e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 62/499 (12%), Positives = 147/499 (29%), Gaps = 135/499 (27%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGPA---QAQNLRDSL-----------AEA---KSDIVV---------KVGL 147
I +++ + L A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNI----GVIAVCPKGMGP 242
DN++ + +C K +I+ S L + + FP + ++++ +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIK 401
Query: 243 SVRRLYVQGKE----INGAGINSSFAVH-------QDVDGRAT---------NVALGWSV 282
S + V + S+ ++ ++ N+ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-- 459
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGI-LLGAVHGIVESLFR------RFTENGMNEDLAY 335
+Y + G L H +LFR RF E + +
Sbjct: 460 ---DSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRH 509
Query: 336 KNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAG 395
+T +G I++T L Y + ++ ++E+ +A ++ L + E++
Sbjct: 510 DSTAWNASG---SILNTLQQLKFYKPYICDNDPKYERLVNA----ILDFLPKIEENLICS 562
Query: 396 SEIRSVVLAGRRFYEKEGL 414
+ +A E E +
Sbjct: 563 KYTDLLRIA--LMAEDEAI 579
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 434 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 100.0 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.97 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.96 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.91 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.87 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.87 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.86 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.83 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.79 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.79 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.77 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.75 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.74 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.74 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.63 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.63 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.63 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.58 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.58 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.56 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.56 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.54 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.53 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.52 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.51 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.51 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.49 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.48 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.48 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.46 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.44 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.44 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.44 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.43 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.43 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.42 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.41 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.41 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.41 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.4 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.39 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.38 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.38 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.37 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.37 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.37 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.37 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.36 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.34 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.34 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.34 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.34 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.33 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.33 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.33 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.32 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.32 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.3 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.27 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.26 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.26 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.26 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.26 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.9 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.25 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.23 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.22 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.2 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.19 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.19 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.18 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.17 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.13 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.13 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.12 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.11 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.1 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.1 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.09 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.08 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.08 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.08 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.08 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.07 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.05 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.05 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.05 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.03 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.03 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.02 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.02 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.01 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.99 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.99 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.99 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.99 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.98 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.96 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.96 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.96 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.96 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.94 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.92 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.91 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.91 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.9 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.9 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.87 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.87 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.86 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.82 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.76 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.74 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.71 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.7 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.69 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.67 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.64 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.63 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.62 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.6 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.58 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.57 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.56 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.55 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.53 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.52 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.52 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.5 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.49 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.49 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.45 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.44 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.35 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.35 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.34 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.3 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.29 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.28 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.27 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.25 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.25 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.23 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.23 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.23 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.22 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.18 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.18 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.17 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.17 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.16 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.15 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.13 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.12 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.1 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.08 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.07 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.07 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.06 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.06 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.06 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.06 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.05 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.03 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.03 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.01 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.0 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.0 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.99 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.99 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.96 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.95 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.95 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.94 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.94 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.93 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.92 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.92 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.91 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.88 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.87 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.86 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.85 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.83 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.83 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.81 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.8 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.79 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.78 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.77 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.75 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.74 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.71 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.7 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.7 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.7 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.68 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.66 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.66 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.65 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.65 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.65 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.62 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.59 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.59 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.59 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.59 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.56 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.55 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.52 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.52 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.5 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.49 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.49 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.49 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.49 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.48 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.47 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.46 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.45 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.45 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.44 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.42 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.42 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.38 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.37 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.35 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.35 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.35 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.34 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.31 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.29 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.29 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.27 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.27 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.27 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.25 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.24 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.2 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.18 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.18 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.16 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.15 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.14 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.13 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.12 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.08 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.08 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.04 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.03 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.03 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.0 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.98 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.97 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.97 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.97 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.96 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.95 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.94 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.92 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.91 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.91 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.89 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.87 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.85 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.84 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.8 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.8 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.79 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.76 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.75 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.74 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.73 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.69 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.68 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.64 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.63 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.61 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.6 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.59 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.58 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.57 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.56 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.51 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.43 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.41 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.41 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.37 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.37 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.36 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.35 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.3 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.19 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.12 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.06 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.04 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.04 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.99 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.95 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.94 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.93 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.93 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.92 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.87 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.79 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.79 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.64 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.62 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.62 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.59 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.56 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.46 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.45 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.34 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.33 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.32 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.3 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.28 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.13 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.07 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.92 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 94.92 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.9 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 94.89 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 94.87 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 94.81 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.8 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 94.77 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 94.66 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.64 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 94.64 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.63 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 94.48 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.44 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.41 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.14 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.11 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.06 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 94.05 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.96 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.87 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.84 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.82 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 93.81 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.79 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.78 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.7 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 93.69 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.64 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 93.63 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 93.58 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.57 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.57 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.48 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 93.48 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 93.47 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.45 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.42 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 93.41 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 93.38 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.38 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.37 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.36 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.33 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 93.29 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.21 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.18 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 93.17 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 93.1 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.1 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.07 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 93.06 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 92.98 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.95 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.89 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 92.81 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 92.8 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.74 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 92.72 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.7 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 92.66 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.63 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 92.61 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 92.59 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.56 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 92.54 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 92.53 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.46 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 92.42 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 92.36 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 92.33 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.29 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.27 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.1 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 92.07 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 92.05 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 92.04 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 92.01 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.84 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.84 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 91.79 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 91.79 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.72 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 91.63 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 91.63 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 91.6 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.57 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.57 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.54 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 91.54 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.53 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 91.53 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.51 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.41 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.41 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 91.4 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 91.4 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.37 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.34 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 91.33 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.29 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 91.29 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.27 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.25 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 91.2 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.13 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.12 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 91.08 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.08 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 91.06 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.03 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 90.98 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.97 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 90.94 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 90.8 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 90.76 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 90.68 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 90.63 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 90.63 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.62 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 90.57 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 90.43 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.42 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 90.41 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 90.32 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 90.25 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 90.23 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 90.21 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 90.12 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.09 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 90.09 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 90.08 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 90.06 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 90.02 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 90.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 89.85 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 89.76 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 89.7 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.69 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 89.65 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 89.57 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 89.54 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.51 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 89.48 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 89.47 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 89.4 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.34 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.19 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 89.16 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 89.09 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.08 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 89.04 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 88.85 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 88.84 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 88.81 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 88.81 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 88.79 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 88.75 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 88.63 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.6 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 88.57 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 88.55 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.55 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 88.5 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 88.43 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.31 | |
| 3l5o_A | 270 | Uncharacterized protein from DUF364 family; RARE m | 88.3 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 88.16 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 88.14 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.01 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.99 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 87.94 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 87.92 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 87.87 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-89 Score=711.84 Aligned_cols=365 Identities=85% Similarity=1.302 Sum_probs=346.6
Q ss_pred CccccccccchhhhhhhhcccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 013877 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~ 147 (434)
.+++++|||++|.+++++|+|+.|+||+||||.|++++++|+|++||||||+|+||++||++|+++++++++|++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~ 90 (525)
T 3fr7_A 11 AMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 90 (525)
T ss_dssp ----CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 45779999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCC
Q 013877 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (434)
Q Consensus 148 r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~ 227 (434)
+.++++++.|++.|+...++++.++.|++++||+||+++||..+.+++++|+|+|++|++|+++|||+++++++.++.+|
T Consensus 91 r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p 170 (525)
T 3fr7_A 91 RKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFP 170 (525)
T ss_dssp CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCC
T ss_pred CCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCC
Confidence 98888999999999984233446899999999999999999999999999999999999999999999998876678899
Q ss_pred CCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh
Q 013877 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (434)
Q Consensus 228 ~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t 307 (434)
++++|||+|||+|+++||++|++|+++||+|+|++|+++||+|+++++++++|+.++|++++++|+|++|+++|+||+|+
T Consensus 171 ~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqt 250 (525)
T 3fr7_A 171 KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250 (525)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhccchhHHHHHHH
Q 013877 308 ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (434)
Q Consensus 308 vL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~~~m~e 387 (434)
+|||++|++++++||++|++||+||+||++++|+++|+|++||+++|+.+|+++||+|++++||++|...+.|+|++|+|
T Consensus 251 vLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel~~~i~~li~e~G~~~m~~~~S~ta~~~~~~~~~~~~~~~~~~m~~ 330 (525)
T 3fr7_A 251 ILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYE 330 (525)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCcHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999966999999999999999999998899999988888999999999
Q ss_pred HHHhccCChhHHHHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 388 ~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+|++||+|+|+|+||++|+|++||++|++|||++||+++|||+|.
T Consensus 331 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 375 (525)
T 3fr7_A 331 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGE 375 (525)
T ss_dssp HHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSTTSHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcCccchhccccccchhhhcccHHHHHHH
Confidence 999999999999999999999999999999999999999999874
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-74 Score=594.81 Aligned_cols=305 Identities=26% Similarity=0.406 Sum_probs=285.2
Q ss_pred ccccccchhhhhhhh-----cccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 013877 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv 145 (434)
.|||||++||+|+.+ ||+++| |.++++.||| |||+|||||+||++||+||||| |++|+|
T Consensus 2 ~ny~n~l~~~~~~~~~~~c~~m~~~e---------F~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~V 65 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLGKCRFMGRDE---------FADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISY 65 (491)
T ss_dssp CCTGGGSCHHHHHHHHTCCEECCGGG---------GTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEE
T ss_pred cchhccccHHHHHHHhccceeccHHH---------hcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEE
Confidence 499999999999987 888888 9999999999 9999999999999999999999 999999
Q ss_pred EecCCc-----hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhh
Q 013877 146 GLRKGS-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (434)
Q Consensus 146 g~r~~~-----~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~ 220 (434)
|+|+++ +||++|+++||. +.+++|++++||+|++++||..|.++|++|.|+||+|++|.++|||++++.
T Consensus 66 glr~~s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~- 139 (491)
T 3ulk_A 66 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEV- 139 (491)
T ss_dssp EECHHHHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTT-
T ss_pred EeCCCCcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCccccccc-
Confidence 999544 899999999999 578999999999999999999999999999999999999999999999874
Q ss_pred cccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 013877 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (434)
Q Consensus 221 ~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~--qdvsg~a~e~a~~la~aiG~~~--~iettf~~ 296 (434)
++.||+|+|||||+||+||+.||++|++| +|+|++|||| ||+||+++++|++|+.++|++| +++|||++
T Consensus 140 --~i~pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~e 212 (491)
T 3ulk_A 140 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 212 (491)
T ss_dssp --CCCCCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHH
T ss_pred --ccccCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHH
Confidence 57999999999999999999999999997 7999999998 8999999999999999999987 79999999
Q ss_pred hcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhc
Q 013877 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (434)
Q Consensus 297 E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~ 376 (434)
|+++||||||++|||+++++++++||++|++||+|++|++++.++++ +|+++|+++||.+|+++|| +|++||.|-..
T Consensus 213 EtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~~~~~~e~k-lIvdli~egGi~~M~~siS--~TAe~G~~~~~ 289 (491)
T 3ulk_A 213 EVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKLRAYALS 289 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-HHHHHHHhCCHHHHHHhcC--chhhccchhhh
Confidence 99999999999999999999999999999999999999999888887 8999999999999999999 67789997322
Q ss_pred -cc-hhHHHHHHHHHHhccCChhHHHHHHhcCc
Q 013877 377 -SY-YPCMEILYECYEDVAAGSEIRSVVLAGRR 407 (434)
Q Consensus 377 -~~-~p~~~~m~e~~~~v~~G~f~r~~~~~~~~ 407 (434)
.. ..++++|+++|++|++|+|+|+|+.+++.
T Consensus 290 ~~~~~~~k~~~~~~l~~I~sG~Fa~~~~~e~~~ 322 (491)
T 3ulk_A 290 EQLKEIMAPLFQKHMDDIISGEFSSGMMADWAN 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHc
Confidence 32 34678999999999999999999998754
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=332.94 Aligned_cols=300 Identities=28% Similarity=0.468 Sum_probs=258.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+++ ++|+|||+|+||.++|++|+++ |++|+++++..+++++.+.+.|+.. . +.++++++||+||++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 56788 8999999999999999999999 9998888887666678888889863 3 888999999999999
Q ss_pred ecchHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
+|+..+.++++ ++.+++++|++|++++|+++ .... +.++.+++|+++||++|++.++++|+.| .|.+++++
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999999998 99999999999999999987 4433 3346788999999999999999999986 79999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
++++.++++.+.+..|+..+|..+ ++++++.+|+..|+|+++++|||++|+++...++.+++.|+++++||++++++.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~ 231 (338)
T 1np3_A 152 IYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHEL 231 (338)
T ss_dssp EEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHH
Confidence 999999999999999999999856 788999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhc-cc--hhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCcc
Q 013877 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-SY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPM 419 (434)
Q Consensus 343 ~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~-~~--~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~ 419 (434)
. ++.++|..+|+..|+...|+ .+.|++.+.. .. ...++.|+++++.|++|+|.++|+.+++. +|..|.+ -.
T Consensus 232 ~-~~~~~~~~gg~~~~r~a~s~--p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~--~r~~~~~-~~ 305 (338)
T 1np3_A 232 K-LIVDLMYEGGIANMNYSISN--NAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAA--NYPSMTA-YR 305 (338)
T ss_dssp H-HHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHT--TSHHHHH-HH
T ss_pred H-HHHHHHHhcCHHHHHHhcCC--HHHHhhhhcCCccccHHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccHHHHH-HH
Confidence 6 78999899999888766664 4569887432 11 34678999999999999999999998765 2334443 45
Q ss_pred cccccccccccC
Q 013877 420 GKIDQTRIPINT 431 (434)
Q Consensus 420 ~~~~~~~~w~~~ 431 (434)
.++++.+||++|
T Consensus 306 ~~~~~~~~~~~g 317 (338)
T 1np3_A 306 RNNAAHPIEQIG 317 (338)
T ss_dssp HHHHHSHHHHHH
T ss_pred HHHhCCcHHHHH
Confidence 566789999986
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=256.47 Aligned_cols=221 Identities=16% Similarity=0.149 Sum_probs=188.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+.+.|+.. ..+..++++++|+||+++||
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7899999999999999999999 88 88888776555444444458875 56889999999999999999
Q ss_pred hHHHHHHHHHHhc-CCCCcE-EEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 189 AAQADNYEKIFSC-MKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 189 ~a~~~vl~eI~~~-Lk~g~i-L~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
+...+++++|.++ ++++++ |++++|+.+..++. .++.+.+|+++|||+|... |.|++. ++..
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v------------~~g~~~-l~~~ 137 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV------------RAGATG-LFAN 137 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG------------TCEEEE-EECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh------------cCccEE-EEeC
Confidence 9999999999998 888865 56889999877765 5566779999999999887 478887 5567
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
.+++.++++.+..++..+|....+ ..| ++++..+.++|++|+ +++++.+.+++.|+++++|++++.|++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v----~~E---~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~ 210 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWV----SSE---DQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTV 210 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEEC----SSH---HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEE----CCH---HHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888999999999999999964111 123 367788999999998 679999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 343 TGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
.| .++|+.++|. ..++|+|+||.
T Consensus 211 ~G-~a~~~~~~~~~p~~l~~~v~spg 235 (280)
T 3tri_A 211 LG-AARMALETEQSVVQLRQFVTSPG 235 (280)
T ss_dssp HH-HHHHHHTCSSCHHHHHHHHCCTT
T ss_pred HH-HHHHHHhcCCCHHHHHHhccCCC
Confidence 99 9999999996 99999999995
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=235.20 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=171.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+.+.|+.. ..+..|+++++|+||+++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999999 97 88877776444444444568775 5688999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 188 DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
|+...++++++.++++++++| ++++|+.+..+++ .++.+..++++|||.|... +.|+.. ++..
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g~~~-~~~~ 136 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV------------GEGMSA-LCPN 136 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG------------TCEEEE-EEEC
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH------------cCceEE-EEeC
Confidence 999999999999999999865 4889998776654 4456778999999999876 367766 5567
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
...+.++.+.+..++..+|.. +.. .| +.++..+.++|++|+ ++|++.+.+++.|+++++|++.+.+++
T Consensus 137 ~~~~~~~~~~~~~l~~~~G~~--~~~---~e---~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~ 208 (247)
T 3gt0_A 137 EMVTEKDLEDVLNIFNSFGQT--EIV---SE---KLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAV 208 (247)
T ss_dssp TTCCHHHHHHHHHHHGGGEEE--EEC---CG---GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCE--EEe---CH---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778899999999999999963 211 23 356677889999997 788999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCcch
Q 013877 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (434)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vssp~~ 367 (434)
.| +++|+.++|. ..|+|+|+||.-
T Consensus 209 ~g-s~~~~~~~~~~p~~l~~~v~spgG 234 (247)
T 3gt0_A 209 LG-SAKMVLETGIHPGELKDMVCSPGG 234 (247)
T ss_dssp HH-HHHHHHHSCC--------------
T ss_pred HH-HHHHHHHcCCCHHHHHHhcCCCCc
Confidence 99 8999999997 999999999963
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=205.30 Aligned_cols=222 Identities=14% Similarity=0.103 Sum_probs=175.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.++|.+|.++ | ++|++++|..+ ...+...+.|+.. ..+..++++++|+||++|
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 78887777643 2445555678775 467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe-ccchhhhhhcccc-cCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGL-DFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s-~G~~i~~~~~~~i-~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
||+...++++++.+.++++++|++. .|+.+..+.+..- .+ .+..|++.||++|... +.|... ++
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~-~~~~vv~~~p~~p~~~------------~~g~~v-~~ 158 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFR-PAPRVIRCMTNTPVVV------------REGATV-YA 158 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTS-SCCEEEEEECCGGGGG------------TCEEEE-EE
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcC-CCCeEEEEeCCcHHHH------------cCCeEE-EE
Confidence 9999999999999999999887654 6887654433100 11 2458999999999876 256644 44
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVE 340 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e 340 (434)
...+.+.+..+.+..++..+|.. + +...|+++..+.++|++|+ +++++.+.+++.|+++++++.++.+
T Consensus 159 ~g~~~~~~~~~~v~~ll~~~G~~--~------~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~ 230 (322)
T 2izz_A 159 TGTHAQVEDGRLMEQLLSSVGFC--T------EVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQ 230 (322)
T ss_dssp ECTTCCHHHHHHHHHHHHTTEEE--E------ECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhCCCE--E------EeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56667789999999999999953 1 1123567788888998887 6889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 341 ~l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
++.| .++++.+.|. ..+++.+++|.
T Consensus 231 ~~~g-~~~~~~~~~~~p~~l~~~v~sp~ 257 (322)
T 2izz_A 231 ALLG-AAKMLLHSEQHPGQLKDNVSSPG 257 (322)
T ss_dssp HHHH-HHHHHHHCSSCHHHHHHHHCCTT
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9998 7888887764 67889998884
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=183.05 Aligned_cols=213 Identities=13% Similarity=0.200 Sum_probs=165.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
+||+|||+|+||.++|.+|.++ | ++|.+++|..++ .|+.. ..+..++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 6899999999999999999998 8 688777776443 57664 4678899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
+....++++++.++++++.+|+++.|+....+.+ .++.+.++++++|+.|... +.| ...++...
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV------------GEG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG------------TCE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH------------cCC-eEEEEeCC
Confidence 9999999999999885555677889998765554 3455557889999888765 367 44466666
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
+.+.+..+.+..++..+|. ++.. ..+.++..+.++++.|+ +++++.+.+++.|++++.++....+.+.
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~~------~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~ 203 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHEI------KEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIK 203 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEEC------CGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC--EEEe------CHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6788999999999999994 2222 12356677888887775 7788888899999999999999999988
Q ss_pred HHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 344 GIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 344 Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
| +.++..+.+. ..+.|.+++|.
T Consensus 204 ~-~~~~~~~~~~~~~~l~d~~~~~~ 227 (262)
T 2rcy_A 204 G-SVEMVKKSDQPVQQLKDNIVSPG 227 (262)
T ss_dssp H-HHHHHHHCSSCHHHHHHHHCCTT
T ss_pred H-HHHHHHhcCCCHHHHHHhcCCCC
Confidence 7 6677765443 45566666663
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=182.90 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=169.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||+|+||.++|.+|.+. | ++|.+++|..++..+.+...|+.. ..+..+++ ++|+||+++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999998 9 888877766444333334458764 45677888 9999999999888
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-ccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
..++++++.+ + +++|++. .|+....+.+ .++.+..+++++|+.|... +.|... +.+....
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~------------~~g~~~-i~~~~~~ 130 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH------------cCceEE-EEcCCCC
Confidence 8888887766 5 7777766 7887765554 4455678999999988765 356766 4456666
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gl 345 (434)
+.+..+.+..++..+|.. +.. . ..|.++..++++|+.++ +++++.+.+++.|++++.++..+.+++.|
T Consensus 131 ~~~~~~~~~~l~~~~g~~--~~~---~--~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~- 202 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLT--VWL---D--DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKG- 202 (263)
T ss_dssp CHHHHHHHHHHHHTTEEE--EEC---S--STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCE--EEe---C--ChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Confidence 788999999999999853 111 1 13467888888888886 66777888999999999999999999998
Q ss_pred HHHHHHHhc--HHHHHHhcCCcc
Q 013877 346 ISKIISTQG--MLAVYNSFSGED 366 (434)
Q Consensus 346 i~~li~e~G--~~~m~~~vssp~ 366 (434)
..+++.++| ...+++.+++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
T 1yqg_A 203 AVALAEQTGEDFEKLQKNVTSKG 225 (263)
T ss_dssp HHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHhcCCCHHHHHHhcCCCC
Confidence 788999899 678899998874
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=181.55 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=167.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
++||+|||+|+||.+++.+|.+. |++|.+++++.++..+.+.+.|+.. ..+.+++++++|+|++++|+..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHh
Confidence 47999999999999999999988 8888777665444334444457764 5688899999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-ccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
+.+++.+ +++|++|+.. .|+....+.+ .++.+.++++.+|+.|... +.|... +.+....
T Consensus 73 ~~~v~~~----l~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~------------~~g~~~-i~~~~~~ 132 (259)
T 2ahr_A 73 FETVLKP----LHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALV 132 (259)
T ss_dssp HHHHHTT----SCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTC
T ss_pred HHHHHHH----hccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH------------cCceEE-EEcCCCC
Confidence 7777755 3478777655 6787665544 3345568999999988765 356555 4556667
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gl 345 (434)
+.+..+.+..++..+|. ++.. .+ +.++..+.++|+.|+ +++++.+.+++.|+++++++....+++.|
T Consensus 133 ~~~~~~~~~~ll~~~G~--~~~~---~~---~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~- 203 (259)
T 2ahr_A 133 SQELQARVRDLTDSFGS--TFDI---SE---KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLA- 203 (259)
T ss_dssp CHHHHHHHHHHHHTTEE--EEEC---CG---GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCC--EEEe---cH---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Confidence 88999999999999993 3322 22 246677888887765 77889999999999999999999999998
Q ss_pred HHHHHHHhc--HHHHHHhcCCcc
Q 013877 346 ISKIISTQG--MLAVYNSFSGED 366 (434)
Q Consensus 346 i~~li~e~G--~~~m~~~vssp~ 366 (434)
..+++.++| -..+++.+++|.
T Consensus 204 ~~~~~~~~~~~p~~l~~~~~~p~ 226 (259)
T 2ahr_A 204 SASNLKTSSQSPHDFIDAICSPG 226 (259)
T ss_dssp HHHHHHHSSSCHHHHHHHHCCTT
T ss_pred HHHHHHhcCCCHHHHHHhCCCCC
Confidence 788888888 567778888875
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=173.41 Aligned_cols=213 Identities=13% Similarity=0.080 Sum_probs=152.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|+||+|||+ |+||.++|++|.+. |++|++++|. .+..+.+.+.|+. ..+..++++++|+||+++|+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIA-PEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCS-HHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 379999999 99999999999999 9998776665 3344555556754 346778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEE-eccchhhhhhcccccCCCCccEEEeccCCChhhH----HHHHhhcccccCCC------
Q 013877 190 AQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------ 258 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~-s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v----r~ly~~G~~~~G~G------ 258 (434)
...++++++.+.++++++|++ +.|..+..+.+ . .++..|++.||+.|+... ... +.|
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~--------~~g~l~~~~ 146 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAA--------RTDYHGGIA 146 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHH--------HTCSSSSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhh--------ccCcccccc
Confidence 999999999999999998774 45555544432 2 346889999999987610 001 145
Q ss_pred -ceEEEeecCCCCHHHHHHHHHHHHHhCCC--cccccchhhhcccccccchh---hhhchHHHHHHHHHHHHHHcCCCHH
Q 013877 259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERG---ILLGAVHGIVESLFRRFTENGMNED 332 (434)
Q Consensus 259 -v~aliav~qdvsg~a~e~a~~la~aiG~~--~~iettf~~E~~~Dlfge~t---vL~G~~~aliea~~~~~v~~Gl~~e 332 (434)
.+.++. ....+.+..+.+..++..+|.+ +++.. .+...|.++... ..+..+.+++|++.+.+++.|++++
T Consensus 147 ~~~~i~~-~~~~~~~~~~~v~~l~~~~G~~~~~~~~v---~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~ 222 (286)
T 3c24_A 147 KQAIVCA-LMQGPEEHYAIGADICETMWSPVTRTHRV---TTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQ 222 (286)
T ss_dssp CEEEEEE-EEESCTHHHHHHHHHHHHHTCSEEEEEEC---CHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred cceeeee-ccCCCHHHHHHHHHHHHHhcCCcceEEEe---ChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344333 2335778999999999999973 23333 233344442211 1223333488889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013877 333 LAYKNTVECITGIISKIIST 352 (434)
Q Consensus 333 ~A~~~~~e~l~Gli~~li~e 352 (434)
+++.++.+++.| +++++.+
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~ 241 (286)
T 3c24_A 223 AALDFMIGHLNV-EIAMWFG 241 (286)
T ss_dssp HHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHHh
Confidence 999999999987 5665543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=171.65 Aligned_cols=230 Identities=11% Similarity=0.045 Sum_probs=161.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
++||+|||+|+||.++|++|.+. |.|++|+++++. ....+.+.+.|... ....+++++++++|+||+++|+..
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNRS-DRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSS-HHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcCC-HHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 37999999999999999999987 113577665554 44455666677631 013577788999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccchh---hhhhcccccCCC-CccEEEeccC------CChhhHHHHHhhcccccCCCc
Q 013877 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSMGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 191 ~~~vl~eI~~~-Lk~g~iL~~s~G~~i---~~~~~~~i~~~~-di~VI~v~Pn------~pg~~vr~ly~~G~~~~G~Gv 259 (434)
+.++++++.++ ++++++|++.++... ..+.+ .++. .++++..||. +|+.... ....|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~--------~l~~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANV--------NLFENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCT--------TTTTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhH--------HHhCCC
Confidence 99999999999 999999888777653 33333 2333 6778888886 4443211 123567
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~ 339 (434)
+..++++...+.+..+.+..++..+|.. ++.++.++ .|.. .+.++++.|.+.-++.+.+...|++.+.++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~~~~~~~---~d~~--~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~ 221 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHAR-YVEIDAAE---HDCV--TSQISHFPHIIASSLMKQAGDFSESHEMTKHFAA 221 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCE-EEECCHHH---HHHH--HHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHH---HHHH--HHHHhhHHHHHHHHHHHHHHhcccchhhHHhhcc
Confidence 7778888777888999999999999973 33332111 1211 2456777776555555666667888889999999
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhcCCcc
Q 013877 340 ECITGIISKIISTQGMLAVYNSFSGED 366 (434)
Q Consensus 340 e~l~Gli~~li~e~G~~~m~~~vssp~ 366 (434)
+++.+ ++++. ..--..++|.+++|.
T Consensus 222 ~~~~~-~~rla-~~~p~~~~~~~~~n~ 246 (290)
T 3b1f_A 222 GGFRD-MTRIA-ESEPGMWTSILLTNQ 246 (290)
T ss_dssp HHHHH-TTGGG-GSCHHHHHHHHHHSH
T ss_pred ccHHh-hhhhh-cCCHHHHHHHHHHCH
Confidence 99987 66666 333455677777665
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=173.68 Aligned_cols=260 Identities=12% Similarity=0.041 Sum_probs=177.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEeec
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLavp 187 (434)
|+||+|||+|+||.++|++|++. |+ +|+++++. .+..+.+.+.|... ....+.+++++ ++|+||+++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDIN-PESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeCC-HHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 57999999999999999999998 88 87665554 44456677778741 11346778999 9999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCC------ChhhHHHHHhhcccccCCC
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAG 258 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~~~~G~G 258 (434)
+....++++++.++++++++|+++++... ..+.+ .++. .++..||.. |+.. ....+.|
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~~gp~~a--------~~~l~~g 138 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEKSGVEYS--------LDNLYEG 138 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSCCSGGGC--------CSSTTTT
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCccCChhhh--------hhHHhCC
Confidence 99999999999999999999888777643 22222 2222 266666632 2221 1112357
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHH-HHHHHHHHHHcCCCHHHHHHH
Q 013877 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI-VESLFRRFTENGMNEDLAYKN 337 (434)
Q Consensus 259 v~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~al-iea~~~~~v~~Gl~~e~A~~~ 337 (434)
.+..++++...+.++.+.+..++..+|.. ++.++ +. ..++.+.++|.+|.+ .-++.+.+.+.|++++.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~~-~~~~~---~~---~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 211 (281)
T 2g5c_A 139 KKVILTPTKKTDKKRLKLVKRVWEDVGGV-VEYMS---PE---LHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKY 211 (281)
T ss_dssp CEEEECCCSSSCHHHHHHHHHHHHHTTCE-EEECC---HH---HHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGC
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcC---HH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhh
Confidence 88888888788889999999999999973 33221 11 234667889999986 467778888889999999998
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhccchhHHHHHHHHHHhccCChh--HHHHHHhcC
Q 013877 338 TVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSE--IRSVVLAGR 406 (434)
Q Consensus 338 ~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~~~m~e~~~~v~~G~f--~r~~~~~~~ 406 (434)
+.+.+.+ ++++.. .-...++|.+++|...-.. ...-..+.|.++-+.|++|+. .++++.+.+
T Consensus 212 ~~~~~~~-~~r~~~-~~p~~~~~~~~sn~~~~~~-----~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~ 275 (281)
T 2g5c_A 212 PGGGFKD-FTRIAK-SDPIMWRDIFLENKENVMK-----AIEGFEKSLNHLKELIVREAEEELVEYLKEVK 275 (281)
T ss_dssp CTTTGGG-C---CC-SCHHHHHHHHHHTHHHHHH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHHH-HhHHhc-CCHHHHHHHHHHCHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887 666654 3446667777665421111 112223345556666776665 446665543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=172.82 Aligned_cols=209 Identities=12% Similarity=0.016 Sum_probs=151.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHh-hhccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E-a~~~ADiViLavpd 188 (434)
+||+|||+|+||.++|++|+++ |+ +|+++++. ....+.+.+.|+.. ....++++ ++++||+||+|+|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr~-~~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDIN-PESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSC-HHHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEECC-HHHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 7999999999999999999999 98 87665554 55577788888741 11457788 89999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
....++++++.++++++++|+++.+.. +..+.+ .++. .+|..||...... ..+......++.|...++++
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G~e~--sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK--SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCCCCC--CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccCCcc--cchhhhhhhhhcCCEEEEEe
Confidence 999999999999999999999888775 233332 2233 8999999653211 01111222334577888888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECIT 343 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~ali-ea~~~~~v~~Gl~~e~A~~~~~e~l~ 343 (434)
+...+.++++.+..++..+|.. ++..+.++ .+..+.+.+.+|.++ -++.+.+.+.+.+++++..++.....
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G~~-v~~~~~~~------hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~fr 249 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVGGV-VEYMSPEL------HDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFK 249 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCE-EEECCHHH------HHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccHH
Confidence 8888999999999999999963 44343222 335577778888855 55667777778777666665555444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=160.08 Aligned_cols=209 Identities=13% Similarity=0.060 Sum_probs=150.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+||| +|+||.++|++|++. |++|++.++... .+..+++++||+||+|||+..
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7999999 999999999999999 998877765422 135678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
..++++++.++++++++|++++++....++...-..+ .+++..||.. ++.. . ...|.+.+++++. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~~-g~~~-----~----~~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-----A----SMAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-----S----CCTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCCC-CCCc-----h----hhcCCeEEEecCC--C
Confidence 9999999999999999999988876432221000222 5788888842 2221 0 1245567677665 6
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHH---H
Q 013877 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECITGI---I 346 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~ali-ea~~~~~v~~Gl~~e~A~~~~~e~l~Gl---i 346 (434)
.++.+.+..++..+|.. ++.++ +. ..+..+.+++.+|.++ -++.+.+.+.|++++++++++.+.+.++ +
T Consensus 144 ~~~~~~v~~l~~~~G~~-~~~~~---~~---~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~ 216 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGAK-IYQTN---AT---EHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMI 216 (298)
T ss_dssp GGGTHHHHHHHHHTTCE-EEECC---HH---HHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCE-EEECC---HH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHH
Confidence 78889999999999973 33332 11 2346678889999864 5666777789999999999999998862 3
Q ss_pred HHHHHHhcHHHHHHhcCCcc
Q 013877 347 SKIISTQGMLAVYNSFSGED 366 (434)
Q Consensus 347 ~~li~e~G~~~m~~~vssp~ 366 (434)
+++. ..--..++|.+++|.
T Consensus 217 ~ria-~~~p~~~~di~~sn~ 235 (298)
T 2pv7_A 217 GRLF-AQDAELYADIIMDKS 235 (298)
T ss_dssp HHHH-TSCHHHHHHHHC---
T ss_pred HHHh-cCCHHHHHHHHHHCH
Confidence 4443 334467778877664
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=167.48 Aligned_cols=204 Identities=12% Similarity=0.085 Sum_probs=146.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc----CCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~----ADiViLavp 187 (434)
+||+|||+|+||.++|++|+++ |++|++++++ ....+.+.+.|+.. ..++++++++ +|+||+++|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~-~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYNRS-RSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999999 9988766554 55677788888864 4677777764 799999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
+....++++++.++ ++|++|+++++++.. .+.. .++ ++.+|..||...... ..+..+...++.|.+++++
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~---~~~-~~~~v~~HPmaG~e~--sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKA---RNM-QHRYVGSHPMAGTAN--SGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHH---TTC-GGGEECEEECCSCC---CCGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHH---hCC-CCcEecCCccccccc--cchhhhhhHHhcCCeEEEE
Confidence 99888999999886 899999999887643 3332 233 578999999543211 1233344445667888899
Q ss_pred ecCCCCHH--------HHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHH-HHHHHHHcCCCHHHHH
Q 013877 265 VHQDVDGR--------ATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES-LFRRFTENGMNEDLAY 335 (434)
Q Consensus 265 v~qdvsg~--------a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea-~~~~~v~~Gl~~e~A~ 335 (434)
++...+.+ +++.++.++..+|+. ++..+.++ .+..+.+++.+|.++-. +.+.+.+ .++.++
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~-v~~~~~~~------HD~~~A~vshlPh~ia~aL~~~~~~---~~~~~~ 220 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGAE-VVPSRVGP------HDAAAARVSHLTHILAETLAIVGDN---GGALSL 220 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTCE-EEECCHHH------HHHHHHHHTHHHHHHHHHHHHHHHH---THHHHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCCE-EEEeCHHH------HHHHHHHHhHHHHHHHHHHHHHhhc---chHHHH
Confidence 88877777 899999999999963 44443333 34567788888885544 3444322 245555
Q ss_pred HHHHHHHH
Q 013877 336 KNTVECIT 343 (434)
Q Consensus 336 ~~~~e~l~ 343 (434)
.++.....
T Consensus 221 ~laa~gfr 228 (341)
T 3ktd_A 221 SLAAGSYR 228 (341)
T ss_dssp HHCCHHHH
T ss_pred HHccccHH
Confidence 55555544
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=154.61 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=160.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.+++++|.+. |++|++.++. .+..+.+.+.|... ....+++++ +++|+||+++|+...
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 9988766554 44455566677631 013567788 999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCC------ChhhHHHHHhhcccccCCCceEEEee
Q 013877 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
.++++++.++++++++|+++++.+....+...-.++ .++..||-. |... ....+.|.+..+++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~a--------~~~~~~g~~~~~~~ 139 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGA--------EENLFVNAPYVLTP 139 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGC--------CTTTTTTCEEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHHH--------hHHHhCCCcEEEec
Confidence 999999999999999988777765432221000222 566666743 2211 11123455666777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMN--EDLAYKNTVECI 342 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~Gl~--~e~A~~~~~e~l 342 (434)
+...+.+..+.+..++..+|.. ++.. .+. ..++.+.+++.+|. +.-++.+.+++.|++ ++.++.++.+.+
T Consensus 140 ~~~~~~~~~~~v~~l~~~~g~~-~~~~---~~~---~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~ 212 (279)
T 2f1k_A 140 TEYTDPEQLACLRSVLEPLGVK-IYLC---TPA---DHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGF 212 (279)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCE-EEEC---CHH---HHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEc---CHH---HHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcc
Confidence 7777889999999999999963 2222 122 34566778888876 566788889999988 899999999999
Q ss_pred HHHHHHHHHHhcHHHHHHhcCCcc
Q 013877 343 TGIISKIISTQGMLAVYNSFSGED 366 (434)
Q Consensus 343 ~Gli~~li~e~G~~~m~~~vssp~ 366 (434)
.+ ++++. ..--..++|.+++|.
T Consensus 213 ~~-~~r~~-~~~p~~~~~~~~s~~ 234 (279)
T 2f1k_A 213 RD-TSRVG-GGNPELGTMMATYNQ 234 (279)
T ss_dssp HH-HHTGG-GSCHHHHHHHHHHSH
T ss_pred cc-hhccc-CCCHHHHHHHHHHhH
Confidence 87 66665 344577788887764
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=152.46 Aligned_cols=213 Identities=12% Similarity=0.046 Sum_probs=134.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||+|+||.+++++|.+. ++|+ ++++..++..+.+...|. . ..+++++++++|+||+++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999998643 3553 555553333333344565 3 4577788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEec-cchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~-G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
+.+++.++. +++++|+..+ ++....++. ........+..+|++|.... .+ .+++..++.
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~p~~~~~g~~~~~~--~~--------~~~~~~~~~---- 130 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSSLEKALE--MK--------DQIVFGLEG---- 130 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC--CTTGGG--CG--------GGCCEEECC----
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH---hhccccchhhhcCCCchhHH--Hh--------CCCeEEEEe----
Confidence 888887764 6788776555 555544432 11000111223445443320 01 346554443
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 013877 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECITGIISK 348 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~ 348 (434)
+.+..+.+..++..+|.. ++.. .+...+.++..+.+++..+. ++..+.+.+++.|+++++|+ ..+.+.| .++
T Consensus 131 ~~~~~~~~~~l~~~lG~~-~~~v---~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~--~~~l~~~-~~~ 203 (276)
T 2i76_A 131 DERGLPIVKKIAEEISGK-YFVI---PSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELL--IHTLMKG-VAD 203 (276)
T ss_dssp CTTTHHHHHHHHHHHCSC-EEEC---CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHH--HHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHhCCC-EEEE---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHH-HHH
Confidence 345688999999999963 2222 22233356677777666665 55555577888999999987 7888887 788
Q ss_pred HHHHhcHHHHHHhcCCcc
Q 013877 349 IISTQGMLAVYNSFSGED 366 (434)
Q Consensus 349 li~e~G~~~m~~~vssp~ 366 (434)
++.+.| -++.+++|.
T Consensus 204 ~~~~~g---p~~~~tgP~ 218 (276)
T 2i76_A 204 NIKKMR---VECSLTGPV 218 (276)
T ss_dssp HHHHSC---GGGGCCSHH
T ss_pred HHHhcC---hHhhCCCCc
Confidence 899988 388899885
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-17 Score=167.58 Aligned_cols=98 Identities=19% Similarity=0.393 Sum_probs=86.1
Q ss_pred cccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh-hhccchh
Q 013877 302 IFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA-YSASYYP 380 (434)
Q Consensus 302 lfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~-~~~~~~p 380 (434)
.|+....++.++.++++++||++|++||.||.||++|+|+++ ||+++|+++|+.+|++.|| +|||||+| |++.
T Consensus 354 ~f~~Gilmva~v~a~ve~~FEtlveaGy~pE~AYfE~LHElk-LIvdli~e~gl~~M~~sIS--dTAEYG~yl~~~~--- 427 (491)
T 3ulk_A 354 YFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLFSYA--- 427 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHTTGGGHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHH---
T ss_pred chhhhhHHHHHHHHHHhhhHHHHHHcCCcHHHHHHHHHhHHH-HHHHHHHHhhHHHHHhHhh--hHhhhcCEEecHH---
Confidence 354444448889999999999999999999999999999999 9999999999999999999 89999999 5544
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhcC
Q 013877 381 CMEILYECYEDVAAGSEIRSVVLAGR 406 (434)
Q Consensus 381 ~~~~m~e~~~~v~~G~f~r~~~~~~~ 406 (434)
++..|++++++||+|.|+|++ .+|+
T Consensus 428 ~k~~mk~~l~~Iq~g~fak~~-~e~~ 452 (491)
T 3ulk_A 428 CVPLLKPFMAELQPGDLGKAI-PEGA 452 (491)
T ss_dssp HHHHTHHHHHTCCTTSSSSCC-CCCC
T ss_pred HHHHHHHHHHHccCChHhhhh-hhcc
Confidence 455899999999999999994 5554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=139.42 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=136.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+.+ +||+|||+|.||.+++++|.+. |++ |.++++..++..+.+...|+.. ..+.+++++++|+||+++
T Consensus 8 ~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 8 IED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEECC
T ss_pred CCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEec
Confidence 345 7899999999999999999998 987 6666655433333334447764 467888899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe-ccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
|+..+.++++++.+.++++++|++. .|+....+.+ .++. .. ..||-.|....+ . ....+.+.++
T Consensus 77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~--~~~~~~~~~g~~-~------~~~~~~~~~v-- 141 (266)
T 3d1l_A 77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YG--VFYPMQTFSKQR-E------VDFKEIPFFI-- 141 (266)
T ss_dssp CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EE--EEEECCCC---C-C------CCCTTCCEEE--
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-cc--CcCCceecCCCc-h------hhcCCCeEEE--
Confidence 9999889999999999999987654 5665544432 2222 11 134544311100 0 0123456544
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR-FTENGMNEDLAYKNTVECITG 344 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~-~v~~Gl~~e~A~~~~~e~l~G 344 (434)
...+.+..+.+..++..+|.. ++.. .+.....|+..+.+++.+++.+-++.+. +.+.|+++++++.+..+++.|
T Consensus 142 -~~~~~~~~~~~~~l~~~~g~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl~~~~~~~l~~~~~~~ 216 (266)
T 3d1l_A 142 -EASSTEDAAFLKAIASTLSNR-VYDA---DSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARK 216 (266)
T ss_dssp -EESSHHHHHHHHHHHHTTCSC-EEEC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH
T ss_pred -ecCCHHHHHHHHHHHHhcCCc-EEEe---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 223678899999999999963 2222 1111124667777877777533333333 358999999999988888876
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=147.63 Aligned_cols=196 Identities=18% Similarity=0.229 Sum_probs=125.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||||||+|+||.+||+||.++ |++|++++|+.+ ..+...+.|... +.++.|+++++|+||+|+|+..
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 68999999999999999999999 999998887644 456666788876 7899999999999999999888
Q ss_pred HH-HHHHH---HHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 QA-DNYEK---IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~~-~vl~e---I~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+. +|+.. +.+.+++|++|++.+-.... .+.+ ..-..++.++- +|-.-++. .-++ |--. |
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~---~A~~-------G~L~-i 137 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAA-------GTLT-F 137 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHH---HHHH-------TCEE-E
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHH---HHHh-------CCEE-E
Confidence 75 67753 78899999999988765432 1111 11134666663 45221221 1123 3323 2
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iett-f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
-+.. +.++.+.++.++..+|.. ++..- .-.-... .+--+.++.+...++.|+ +..+.+.|++++..+.
T Consensus 138 mvGG--~~~~~~~~~p~l~~~g~~-i~~~G~~G~g~~~-Kl~~N~l~~~~~~a~aEa-~~la~~~Gld~~~~~~ 206 (300)
T 3obb_A 138 MVGG--DAEALEKARPLFEAMGRN-IFHAGPDGAGQVA-KVCNNQLLAVLMIGTAEA-MALGVANGLEAKVLAE 206 (300)
T ss_dssp EEES--CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHTTCCHHHHHH
T ss_pred EEeC--CHHHHHHHHHHHHHhCCC-EEEeCCccHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHH
Confidence 2344 568999999999999953 11110 0000000 000111222223334443 4567899999987665
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-14 Score=135.59 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=142.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-----------C--cccc--------CCCc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--FTEE--------NGTL 169 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------G--~~~~--------~~~~ 169 (434)
++||+|||+|+||.++|+.|..+ |++|++++++. +..+.+.+. | .... -...
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 76 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDINT-DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS 76 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSH-HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe
Confidence 47999999999999999999999 99988776653 334444332 2 1100 0014
Q ss_pred CCHHhhhccCCEEEEeecch--HHHHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHH
Q 013877 170 GDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~--a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (434)
.++++++++||+||+++|+. ...++++++.+.++++++|+ .++++.+..+.. ..+...+++.+||..|...
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~~--- 150 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVWV--- 150 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTTT---
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCccc---
Confidence 67888999999999999987 55678999999999999876 567777655543 2233458999999988655
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHH
Q 013877 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTE 326 (434)
Q Consensus 247 ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~ 326 (434)
+-...+..+...+.+..+.+..++..+|...+.-. .+ .. -| +..-.+.+++..++..+.+
T Consensus 151 -----------~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~---~~-~~-g~----i~nr~~~~~~~ea~~l~~~ 210 (283)
T 4e12_A 151 -----------NNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELK---KE-KA-GY----VLNSLLVPLLDAAAELLVD 210 (283)
T ss_dssp -----------SCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECS---SC-CT-TT----THHHHHHHHHHHHHHHHHT
T ss_pred -----------CceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEe---cC-CC-CE----EehHHHHHHHHHHHHHHHh
Confidence 12234566777889999999999999996422110 11 11 11 1122233344445666666
Q ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 013877 327 NGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (434)
Q Consensus 327 ~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~~~ 361 (434)
.|.+|++.....-... .| --+++-..|++..++-
T Consensus 211 g~~~~~~id~~~~~~~g~~~G-p~~~~D~~Gld~~~~~ 247 (283)
T 4e12_A 211 GIADPETIDKTWRIGTGAPKG-PFEIFDIVGLTTAYNI 247 (283)
T ss_dssp TSCCHHHHHHHHHHHHCCSSC-HHHHHHHHCHHHHHHH
T ss_pred CCCCHHHHHHHHHhccCCCcC-HHHHHHhccHHHHHHH
Confidence 6789987554322211 14 3455566677555443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=136.67 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=110.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch--------------hHHHHHHcCccccCCCcC
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTLG 170 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~--------------s~~~A~~~G~~~~~~~~~ 170 (434)
...+.+ +||+|||+|+||.++|++|.++ |++|++++|..++ ..+.+.+.|... ..
T Consensus 14 ~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 82 (245)
T 3dtt_A 14 NLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----LA 82 (245)
T ss_dssp -----C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----EE
T ss_pred ccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----cc
Confidence 467777 9999999999999999999999 9999888876443 122222334332 46
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHH-HhcCCCCcEEEEec-cc----------------h-hhhhhcccccCCCCcc
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSMGLDFPKNIG 231 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI-~~~Lk~g~iL~~s~-G~----------------~-i~~~~~~~i~~~~di~ 231 (434)
+..|++++||+||+++|+..+.+++.++ .+.+ +|++|++++ |+ . ...+++ .+| +..
T Consensus 83 ~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~-~~~ 157 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFP-EAK 157 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HST-TSE
T ss_pred CHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCC-CCe
Confidence 7889999999999999999999999888 7877 888877655 32 1 233433 344 469
Q ss_pred EEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 232 VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
|++.+|+.++++....-.. -.|-..++.... +.++.+.+..++..+|..
T Consensus 158 vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~ 206 (245)
T 3dtt_A 158 VVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQ 206 (245)
T ss_dssp EEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCC
T ss_pred EEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCC
Confidence 9999999999985311100 012222222122 578999999999999964
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-14 Score=132.13 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|+||+|||+|+||.++|++|.+. |++|++ +.|..++..+.+.+.|... ..+..++++++|+||+++|+.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDvVilavp~~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVELKDALQADVVILAVPYD 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECCHHHHTTSSEEEEESCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccChHHHHhcCCEEEEeCChH
Confidence 37999999999999999999999 998877 5555555555566667653 345567789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEE-Eeccc--------------hhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccc
Q 013877 190 AQADNYEKIFSCMKPNSILG-LSHGF--------------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~-~s~G~--------------~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~ 254 (434)
.+.++++++.+ + ++++|+ .+.|+ ....+++ .+| +..|++++|+.|..... .|...
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~~~~v~~----~g~~~ 162 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFNTLPAAVLA----ADPDK 162 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESCSSCHHHHT----SCSBC
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCCCCCHHHhh----hCccc
Confidence 99999998877 5 567665 55566 3445544 444 56899999999988742 12111
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 255 ~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.+.+...+++ .. +.++.+.+..++..+|..
T Consensus 163 ~~~~~~v~~~-g~--~~~~~~~v~~l~~~~G~~ 192 (220)
T 4huj_A 163 GTGSRVLFLS-GN--HSDANRQVAELISSLGFA 192 (220)
T ss_dssp SSCEEEEEEE-ES--CHHHHHHHHHHHHHTTCE
T ss_pred CCCCeeEEEe-CC--CHHHHHHHHHHHHHhCCC
Confidence 1122333333 22 478999999999999964
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=134.39 Aligned_cols=153 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|+||.++|++|+++ |++|+.+++. ++ +++|| |+++|+.++
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9987654441 11 56789 999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccc-hhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 192 ADNYEKIFSCMKPNSILGLSHGF-LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~s~G~-~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
.++++++.+++++|++|++++|. ....++. ..+.+..++..||.. |.+..+... +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm~------------------g~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPIG------------------QDRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEEE------------------TTEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeCC------------------CCceeeeCC---C
Confidence 99999999999999999987664 3332322 113467899999941 234434332 5
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHH
Q 013877 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~ 324 (434)
.++++.+..|+..+|+. ++..+ ...-|.|++....+.-+.+++..+.+.+
T Consensus 111 ~~a~~~l~~L~~~lG~~-vv~~~---~~~hd~~~AAvsh~nhLv~L~~~A~~ll 160 (232)
T 3dfu_A 111 ELGETIVGLLVGELGGS-IVEIA---DDKRAQLAAALTYAGFLSTLQRDASYFL 160 (232)
T ss_dssp HHHHHHHHHHHHHTTCE-ECCCC---GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCE-EEEeC---HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999974 44342 3334467555444444445555554444
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-13 Score=129.81 Aligned_cols=217 Identities=13% Similarity=0.117 Sum_probs=139.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCccccC-------------
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~------------- 166 (434)
|+||+|||+|+||.++|.+|.++ |++|++.++..+ ..+.+ .+.|.....
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 48999999999999999999999 999887766533 23322 123321000
Q ss_pred -CCcCCHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChh
Q 013877 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 167 -~~~~~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
....+++|++++||+||+++|+... .++++++.++++++++|+ .++|+.+..+.. .++..-.++.+||..|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 0135777899999999999998653 478889999999998775 567887765544 233334799999998865
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHH
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~ 322 (434)
. + ..+ .+......+.+..+.+..++..+|... +.. .+. . -| +..-.+.+++.-++.
T Consensus 165 ~-------~-----~~~--~i~~g~~~~~e~~~~~~~l~~~~G~~~-v~~---~~~-~-g~----i~nr~l~~~~~Ea~~ 220 (302)
T 1f0y_A 165 V-------M-----KLV--EVIKTPMTSQKTFESLVDFSKALGKHP-VSC---KDT-P-GF----IVNRLLVPYLMEAIR 220 (302)
T ss_dssp T-------C-----CEE--EEECCTTCCHHHHHHHHHHHHHTTCEE-EEE---CSC-T-TT----THHHHHHHHHHHHHH
T ss_pred c-------C-----ceE--EEeCCCCCCHHHHHHHHHHHHHcCCce-EEe---cCc-c-cc----cHHHHHHHHHHHHHH
Confidence 4 1 223 245566778899999999999999642 111 111 0 11 112223345666667
Q ss_pred HHHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhc
Q 013877 323 RFTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSF 362 (434)
Q Consensus 323 ~~v~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~~~v 362 (434)
.+.+.|+++++......... .| --.+.-..|++.+++..
T Consensus 221 l~~~g~~~~~~id~~~~~g~g~p~G-P~~~~D~~Gld~~~~~~ 262 (302)
T 1f0y_A 221 LYERGDASKEDIDTAMKLGAGYPMG-PFELLDYVGLDTTKFIV 262 (302)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSSC-HHHHHHHHCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHHHHH
Confidence 77777889887554322111 13 23455555665554443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=136.36 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-chhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
++||+|||+|+||.++|++|.+. |+ +|++++++. .+..+.+.+.|+.. ..+++|++++||+||+++|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCc
Confidence 37999999999999999999999 99 888777752 45567777788875 57899999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
....++++++.+.++++++|++.+...
T Consensus 94 ~~~~~~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 94 QAALEVAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp TTHHHHHHHHGGGCCTTCEEEECCCCC
T ss_pred hhHHHHHHhhHhhcCCCCEEEEcCCCC
Confidence 999999999999999999998877654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=129.73 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC--------CcCCHHhhhc---cC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GS 179 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~--------~~~~~~Ea~~---~A 179 (434)
|+||+|||+|+||.++|.+|.++ |++|++.+|+.+ ..+...+.|...... ...+..++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWPA-HIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCHH-HHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 47999999999999999999999 999887766533 345555556542100 0113344444 89
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccchh-hhhhcccccCCCCccEEEe---------ccCCChhhHHHHH
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAV---------CPKGMGPSVRRLY 248 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i-~~~~~~~i~~~~di~VI~v---------~Pn~pg~~vr~ly 248 (434)
|+||+++|+....++++++.++++++++|+ .+.|+.. ..+.+ .+++. .++.. .|+.+...
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~~~~----- 146 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRVKLL----- 146 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEEEEC-----
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEEEEe-----
Confidence 999999999988999999999999998776 4567764 34433 33333 55533 34333222
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.|...+ .+....+.+..+.+..++..+|..
T Consensus 147 -------~~g~~~i-~~~~~~~~~~~~~~~~ll~~~g~~ 177 (316)
T 2ew2_A 147 -------GDGEIEL-ENIDPSGKKFALEVVDVFQKAGLN 177 (316)
T ss_dssp -------SCCCEEE-EESSGGGHHHHHHHHHHHHHTTCC
T ss_pred -------cCCcEEE-eecCCCccHHHHHHHHHHHhCCCC
Confidence 4677773 433344567888999999999964
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=134.31 Aligned_cols=211 Identities=12% Similarity=0.123 Sum_probs=139.9
Q ss_pred cchhhccCCccccccc-----cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-------HHHH
Q 013877 90 DEYIVRGGRDLFNLLP-----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------FAEA 157 (434)
Q Consensus 90 ~e~~~~~~~~~f~~~~-----~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-------~~~A 157 (434)
.|..++ +|..|... ..-..++||+|||+|.||.+||++|.++ |++|++.+++.++. .+.+
T Consensus 30 a~~~~~--~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~ 101 (460)
T 3k6j_A 30 AHSLAG--QWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYARE 101 (460)
T ss_dssp TTCCTT--SCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHhhc--cccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHH
Confidence 444444 67666331 1223348999999999999999999999 99998877664421 2334
Q ss_pred HHcCcccc-------C--CCcCCHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-Eeccchhhhhhccccc
Q 013877 158 RAAGFTEE-------N--GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLD 225 (434)
Q Consensus 158 ~~~G~~~~-------~--~~~~~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~ 225 (434)
.+.|.... + ....++ +++++||+||.++|.... .+++.+|.+.++++++|+ .++++.+..+.+ .
T Consensus 102 ~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~ 177 (460)
T 3k6j_A 102 KSFKRLNDKRIEKINANLKITSDF-HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---V 177 (460)
T ss_dssp HHTTSCCHHHHHHHHTTEEEESCG-GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---T
T ss_pred HHcCCCCHHHHHHHhcceEEeCCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---h
Confidence 44453210 0 013455 478999999999997543 478899999999999885 667887766654 3
Q ss_pred CCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccc
Q 013877 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (434)
Q Consensus 226 ~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge 305 (434)
.+...+++.+||..|.+.+ ... -+.+....+.+.++.+..++..+|...+. . .+ ..
T Consensus 178 ~~~p~r~iG~HffnPv~~m-------------~Lv-EIv~g~~Ts~e~~~~~~~l~~~lGk~~v~-v---~d--~p---- 233 (460)
T 3k6j_A 178 LRDPSNLVGIHFFNPANVI-------------RLV-EIIYGSHTSSQAIATAFQACESIKKLPVL-V---GN--CK---- 233 (460)
T ss_dssp SSSGGGEEEEECCSSTTTC-------------CEE-EEECCSSCCHHHHHHHHHHHHHTTCEEEE-E---SS--CC----
T ss_pred ccCCcceEEEEecchhhhC-------------CEE-EEEeCCCCCHHHHHHHHHHHHHhCCEEEE-E---ec--cc----
Confidence 3334589999998887651 122 25567778899999999999999974211 1 11 11
Q ss_pred hhhhhchHH-HHHHHHHHHHHHcCCCHHHHHHH
Q 013877 306 RGILLGAVH-GIVESLFRRFTENGMNEDLAYKN 337 (434)
Q Consensus 306 ~tvL~G~~~-aliea~~~~~v~~Gl~~e~A~~~ 337 (434)
+-+++-+. +++..++..+.+.|.++++....
T Consensus 234 -Gfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a 265 (460)
T 3k6j_A 234 -SFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKI 265 (460)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 11222222 34444555566899999987764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=129.49 Aligned_cols=196 Identities=16% Similarity=0.113 Sum_probs=128.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc-hH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd-~a 190 (434)
+||+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|+.. ..+.+|+++++|+||+++|+ ..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSPE-KAEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 999987776644 455566678775 67899999999999999995 56
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl---~eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..+++ +++.+.+++|++|++..+......... ......++.++. +|-..+... ... |...+++ .
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~---a~~-------g~l~~~~-g 138 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP---AED-------GTLIILA-A 138 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH---HHH-------TCEEEEE-E
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH---Hhc-------CCEEEEE-e
Confidence 67888 789999999999988877643221110 001123566765 774443331 122 3333233 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG----IVESLFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~ 339 (434)
. +.+..+.+..++..+|.. ++... .... ++.. .+.+...+ ++.-++..+.+.|+++++.+...-
T Consensus 139 g--~~~~~~~~~~ll~~~g~~-~~~~g---~~g~---~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~ 207 (287)
T 3pef_A 139 G--DRNLYDEAMPGFEKMGKK-IIHLG---DVGK---GAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIG 207 (287)
T ss_dssp E--CHHHHHHHHHHHHHHEEE-EEECS---STTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhCCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3 467889999999999964 21111 1101 1111 11222222 334456678899999998877443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-13 Score=129.87 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=126.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch-
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~- 189 (434)
|+||+|||+|+||.++|++|.+. |++|++++|..++ .+.+.+.|... ..+..|+++++|+||+++|+.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~ 89 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTLSK-CDELVEHGASV----CESPAEVIKKCKYTIAMLSDPC 89 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGGG-GHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCHH
Confidence 38999999999999999999999 9999887766444 45556678765 578999999999999999975
Q ss_pred HHHHHH---HHHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 190 a~~~vl---~eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
...+++ +++.+.+++|++|+++++......... ......++.++. +|-..+... -.. |...+++
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~---a~~-------g~l~i~~- 157 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKP---AED-------GQLIILA- 157 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH---HHH-------TCEEEEE-
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhH---Hhc-------CCeEEEE-
Confidence 556788 678899999999998877643221110 001123566665 663322221 122 3433333
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHH----HHHHHHHHHHHHcCCCHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVH----GIVESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~----aliea~~~~~v~~Gl~~e~A~~~~ 338 (434)
.. +.+..+.+..++..+|.. ++... +... ++..-+ .+... +++.-++..+.+.|+++++.+...
T Consensus 158 gg--~~~~~~~~~~ll~~~g~~-~~~~g---~~g~---a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~ 226 (310)
T 3doj_A 158 AG--DKALFEESIPAFDVLGKR-SFYLG---QVGN---GAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDIL 226 (310)
T ss_dssp EE--CHHHHHHHHHHHHHHEEE-EEECS---STTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHhCCC-EEEeC---CcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 468899999999999963 11110 1100 111111 22221 233335567789999999887743
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=127.36 Aligned_cols=198 Identities=15% Similarity=0.075 Sum_probs=126.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch-
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~- 189 (434)
|+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|... ..+.+|+++++|+||+++|+.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPAK-CAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGGG-GHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 57999999999999999999999 9999887776444 45555567765 578999999999999999986
Q ss_pred HHHHHH---HHHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 190 a~~~vl---~eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
...+++ +++.+.+++|++|++++.......... ......++.++.. |...+.. .... |...+++
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~---~a~~-------g~l~~~~- 137 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKK---PAED-------GTLIILA- 137 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHHH-------TCEEEEE-
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHH---HHhc-------CCEEEEE-
Confidence 556788 778999999999988776543211100 0011235566653 5332222 1122 3433232
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHH----HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVH----GIVESLFRRFTENGMNEDLAYKNTVE 340 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~----aliea~~~~~v~~Gl~~e~A~~~~~e 340 (434)
.. +.+..+.+..++..+|.. ++... ... -+... .+.+... +++.-++..+.+.|+++++.+...-+
T Consensus 138 gg--~~~~~~~~~~ll~~~g~~-~~~~g---~~g---~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 208 (287)
T 3pdu_A 138 AG--DQSLFTDAGPAFAALGKK-CLHLG---EVG---QGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA 208 (287)
T ss_dssp EE--CHHHHHHTHHHHHHHEEE-EEECS---STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eC--CHHHHHHHHHHHHHhCCC-EEEcC---CCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 468889999999999963 11110 000 01111 1122222 23333456788999999988875544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-13 Score=131.39 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=118.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||||||+|+||.+||+||.++ |++|++++|+.++ .+...+.|... +.++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 6899999999999999999999 9999888776444 44445667775 67899999999999999998877
Q ss_pred H-HHH-HHHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCC
Q 013877 192 A-DNY-EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 192 ~-~vl-~eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
. +++ .++.+.+++|+++++.+-......++. ......++.++- +|-.-++. .-+. |-..++ +..
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ld-apVsGg~~---~a~~-------g~l~im-~gG- 141 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVG-APIFARPE---AVRA-------KVGNIC-LSG- 141 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH---HHHH-------TCCEEE-EEE-
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceec-CCcCCCcc---cccc-------ccceee-ccc-
Confidence 5 454 468889999999988876543211110 011124666663 44222221 1112 333322 333
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhccc---ccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 013877 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRS---DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (434)
Q Consensus 269 vsg~a~e~a~~la~aiG~~~~iettf~~E~~~---Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~ 337 (434)
+.++.+.++.++..+|.. ++.. -...-. -.+-.+.++.+...++.| ++..+.+.|++++..+..
T Consensus 142 -~~~~~~~~~~~l~~~g~~-i~~~--g~~~G~g~~~Kl~~N~~~~~~~~~~aE-a~~la~~~Gld~~~~~~~ 208 (297)
T 4gbj_A 142 -NAGAKERIKPIVENFVKG-VFDF--GDDPGAANVIKLAGNFMIACSLEMMGE-AFTMAEKNGISRQSIYEM 208 (297)
T ss_dssp -CHHHHHHHHHHHHTTCSE-EEEC--CSCTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCHHHHHHH
T ss_pred -chhHHHHHHHHHHHhhCC-eEEe--cCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHH
Confidence 468899999999999963 1100 000000 000011111122222333 345688999999987774
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=128.42 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=126.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH-
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a- 190 (434)
+||+|||+|+||.++|++|.+. |++|++++|. ....+.+.+.|... ...+++|+++++|+||+++|+..
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLN-PQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999999 9998877665 44455666667652 03578899999999999999864
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccchhhh---hhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 191 QADNY---EKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 191 ~~~vl---~eI~~~Lk~g~iL~~s~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
...++ +++.+.+++|++|++.+...... +.+ .....++.++. +|-..+... -. .|...+++
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~ 144 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA--ALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA 144 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe
Confidence 45676 67889999999998887654321 111 11123667776 784443331 12 34444333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc--hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATT--LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iett--f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~ 338 (434)
.. +.+..+.+..++..+|.. ++... ...-... .+.... +.+...+++.-++..+.+.|+++++.+...
T Consensus 145 -gg--~~~~~~~~~~ll~~~g~~-~~~~~~~~g~a~~~-Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~ 214 (303)
T 3g0o_A 145 -SG--SEAAFTRLKPVLDAVASN-VYRISDTPGAGSTV-KIIHQL-LAGVHIAAAAEAMALAARAGIPLDVMYDVV 214 (303)
T ss_dssp -EC--CHHHHHHHHHHHHHHEEE-EEEEESSTTHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -CC--CHHHHHHHHHHHHHHCCC-EEECCCCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 478899999999999963 21111 0000000 011111 111122233334557889999999887744
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=128.47 Aligned_cols=200 Identities=15% Similarity=0.058 Sum_probs=119.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch-H
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~-a 190 (434)
+||+|||+|+||.++|++|.+. |++|+++++..+ ..+...+.|+.. ..+.+++++++|+||+++|+. .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFPD-ACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSSTH-HHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 4799999999999999999998 998877766543 345555667764 568889999999999999755 5
Q ss_pred HHHHHHH---HHhcCCCCcEEEEeccchhhhhhcccccCC-CCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 QADNYEK---IFSCMKPNSILGLSHGFLLGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl~e---I~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~-~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..+++.+ +.+.+++|++|+..+|+.........-.++ .++. +|+.|...-...... |...++ +.
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~----~~~~p~~~g~~~a~~-------~~~~~~-~~ 137 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAV----FMDAPVSGGVGAARS-------GNLTFM-VG 137 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE----EEECCEESHHHHHHH-------TCEEEE-EE
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE----EEEcCCCCChhHHhc-------CcEEEE-eC
Confidence 5677775 456789999888888876543221000111 1222 233333221112222 344433 33
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~ 338 (434)
. +.+..+.+..++..+|.. ++.+........-.+............+.|++. .+.+.|+++++++...
T Consensus 138 ~--~~~~~~~v~~l~~~~g~~-~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~~ 205 (296)
T 2gf2_A 138 G--VEDEFAAAQELLGCMGSN-VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMN-LGIRLGLDPKLLAKIL 205 (296)
T ss_dssp S--CGGGHHHHHHHHTTTEEE-EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHcCC-eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHH
Confidence 2 567889999999999963 111100000000000000011111123555554 8899999998777643
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=129.29 Aligned_cols=200 Identities=17% Similarity=0.112 Sum_probs=126.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec-chH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp-d~a 190 (434)
+||+|||+|+||.++|++|.+. |++|+++++...+ .+...+.|... ..+..++++++|+||+++| +..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~~-~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAEK-CDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGGG-GHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9988777665443 44455567764 5678899999999999999 666
Q ss_pred HHHHHHHH---HhcCCCCcEEEEeccchh---hhhhcccccC-CCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 QADNYEKI---FSCMKPNSILGLSHGFLL---GHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~~~vl~eI---~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~-~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
..+++.++ .+.++++++|++.+.... ..+.+ .+ ..++.++.. |. ++... ... .|...++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~-p~-~g~~~--~~~-------~g~~~~~ 165 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEA-PV-SGNQQ--LSN-------DGMLVIL 165 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEEC-CE-ESCHH--HHH-------HTCEEEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEc-Cc-cCChh--HHh-------hCCEEEE
Confidence 67788753 478899998886665432 22222 11 134566643 42 22111 112 2444433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECI 342 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a-liea~~~~~v~~Gl~~e~A~~~~~e~l 342 (434)
. .. +.+..+.+..++..+|....+.... +......-....++|+... +.|++ ..+++.|+++++++....++.
T Consensus 166 ~-~g--~~~~~~~v~~ll~~~g~~~~~~~~~--~~~~~~K~~~n~~~~~~~~~~~Ea~-~la~~~G~~~~~~~~~~~~~~ 239 (316)
T 2uyy_A 166 A-AG--DRGLYEDCSSCFQAMGKTSFFLGEV--GNAAKMMLIVNMVQGSFMATIAEGL-TLAQVTGQSQQTLLDILNQGQ 239 (316)
T ss_dssp E-EE--CHHHHHHTHHHHHHHEEEEEECSST--THHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHST
T ss_pred e-CC--CHHHHHHHHHHHHHhcCCEEEeCCC--CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHcCC
Confidence 2 33 4678888999999999642111110 0000011122345555444 55554 448999999998888666554
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=133.11 Aligned_cols=213 Identities=12% Similarity=0.148 Sum_probs=140.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccccC---------CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (434)
++||+|||+|+||.++|.+|.++ |++|++.+++ ....+.+.+ .|..... ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 37999999999999999999999 9998877665 333444332 3321000 0123
Q ss_pred CHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+. +++++||+||+++|+... .+++.++.+.++++++| +.++++.+..+.. ..+...+++.+||..|.+..
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence 45 478999999999998854 47899999999999988 5788888876544 33344589999999998872
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhc-hHHHHHHHHHHHHHH
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRFTE 326 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G-~~~aliea~~~~~v~ 326 (434)
.... +..+...+.+..+.+..++..+|...+ .. .+. . +-+++ .+.+++..++..+.+
T Consensus 151 ----------~Lve-vv~g~~Ts~e~~~~~~~l~~~lGk~~v-~v---~d~--~-----Gfi~Nr~l~~~~~Ea~~l~~~ 208 (483)
T 3mog_A 151 ----------KLVE-VVSGLATAAEVVEQLCELTLSWGKQPV-RC---HST--P-----GFIVNRVARPYYSEAWRALEE 208 (483)
T ss_dssp ----------CEEE-EEECSSCCHHHHHHHHHHHHHTTCEEE-EE---ESC--T-----TTTHHHHTHHHHHHHHHHHHT
T ss_pred ----------CeEE-EecCCCCCHHHHHHHHHHHHHhCCEEE-EE---ecc--C-----cchHHHHHHHHHHHHHHHHHh
Confidence 2333 556777889999999999999996421 11 111 0 11222 222355556666777
Q ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 013877 327 NGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (434)
Q Consensus 327 ~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~~ 360 (434)
.|.++++.....-... .| --.++-..|++..+.
T Consensus 209 g~~~~~~id~a~~~~~G~p~G-P~~l~D~~Gld~~~~ 244 (483)
T 3mog_A 209 QVAAPEVIDAALRDGAGFPMG-PLELTDLIGQDVNFA 244 (483)
T ss_dssp TCSCHHHHHHHHHHTTCCSSC-HHHHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCCCC-HHHHHHHhchHHHHH
Confidence 7778887665322111 13 344555567654443
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=135.43 Aligned_cols=191 Identities=14% Similarity=0.114 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhcc---CCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~---ADiViLa 185 (434)
++|+|||+|+||.++|++|.++ |++|.+++|+.++..+..... |+.. ..+++|++++ +|+||++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~ 85 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLM 85 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEE
Confidence 7899999999999999999999 999988877654433333332 6664 5688898887 9999999
Q ss_pred ecc-hHHHHHHHHHHhcCCCCcEEEEec-cchh--hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 186 ISD-AAQADNYEKIFSCMKPNSILGLSH-GFLL--GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 186 vpd-~a~~~vl~eI~~~Lk~g~iL~~s~-G~~i--~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
||+ ....++++++.+.+++|++|++.. |... ..+.+ . ....++.++ .+|...++.. ... |. .
T Consensus 86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~-~-l~~~g~~~v-~~pv~gg~~~---a~~-------g~-~ 151 (480)
T 2zyd_A 86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR-E-LSAEGFNFI-GTGVSGGEEG---ALK-------GP-S 151 (480)
T ss_dssp SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHHH---HHH-------CC-E
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHCCCCee-CCccccCHhH---Hhc-------CC-e
Confidence 999 577899999999999999887554 4421 22222 0 112356676 4576555441 222 34 3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH-----------HHHHHHHHH---HHH-
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-----------GIVESLFRR---FTE- 326 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~-----------aliea~~~~---~v~- 326 (434)
+.+.. +.++.+.+..++..+|.... . -|+.....++ .|..+ .++.++.|. +++
T Consensus 152 -i~~gg--~~~~~~~v~~ll~~~g~~~~-d----Ge~~v~~~g~----~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~ 219 (480)
T 2zyd_A 152 -IMPGG--QKEAYELVAPILTKIAAVAE-D----GEPCVTYIGA----DGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGG 219 (480)
T ss_dssp -EEEES--CHHHHHHHHHHHHHHSCBCT-T----SCBSBCCCBS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEecC--CHHHHHHHHHHHHHHhcccc-C----CCceEEEECC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344 47889999999999996300 0 0000112222 12222 134444444 788
Q ss_pred cCCCHHHHHHHH
Q 013877 327 NGMNEDLAYKNT 338 (434)
Q Consensus 327 ~Gl~~e~A~~~~ 338 (434)
.|++++++....
T Consensus 220 lGl~~~~~~~l~ 231 (480)
T 2zyd_A 220 LNLTNEELAQTF 231 (480)
T ss_dssp HCCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 599999888755
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=121.50 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=133.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-------CccccCCCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
|||+|||+|.||.+||++|. + |++|++++++ ....+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~-~~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVS-EKALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECC-HHHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 9999877765 3445566555 5543 345665 899999999
Q ss_pred eecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 185 LISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 185 avpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
++|+.... .++.++.+. ++++|+ .++++.+..+.. .......++.+||--|.+. +-..
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 99988763 577777665 898885 667777765543 2222347999999776533 2333
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~ 341 (434)
.+.+....+.+..+.+..++..+|.. ++.. .+. ...-+ ++ .+.+.|++. .+.+ |+++++.....-..
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~-~v~v---~d~---fi~Nr-ll---~~~~~EA~~-l~~~-Gv~~e~id~~~~~g 207 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKE-VVVC---KGQ---SLVNR-FN---AAVLSEASR-MIEE-GVRAEDVDRVWKHH 207 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCE-EEEE---ESS---CHHHH-HH---HHHHHHHHH-HHHH-TCCHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCe-EEEe---ccc---ccHHH-HH---HHHHHHHHH-HHHh-CCCHHHHHHHHHhc
Confidence 45567677889999999999999964 1111 111 11111 11 133555544 3444 99998766633211
Q ss_pred ----H--HHHHHHHHHHhcHHHHHH
Q 013877 342 ----I--TGIISKIISTQGMLAVYN 360 (434)
Q Consensus 342 ----l--~Gli~~li~e~G~~~m~~ 360 (434)
. .| --+++-..|++..++
T Consensus 208 ~g~~~~~~G-P~~l~D~~Gld~~~~ 231 (293)
T 1zej_A 208 LGLLYTLFG-PLGNLDYIGLDVAYY 231 (293)
T ss_dssp HHHHHHHHH-HHHHHHHHCHHHHHH
T ss_pred CCCCCCCCC-HHHHHHHhchHHHHH
Confidence 1 24 345666677755443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=122.74 Aligned_cols=209 Identities=15% Similarity=0.048 Sum_probs=129.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH-
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a- 190 (434)
+||+|||+|+||.++|++|.+. |++|++++|+. ...+.+.+.|... ..+++|+++++|+||+++|+..
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRSP-GKAAALVAAGAHL----CESVKAALSASPATIFVLLDNHA 78 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSH-HHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeCCHHH
Confidence 8999999999999999999999 99988776654 4455555668764 5789999999999999999876
Q ss_pred HHHHHH--HHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 013877 191 QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (434)
Q Consensus 191 ~~~vl~--eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav 265 (434)
..+++. .+.+ +++|++|++++..... .+.+ .....++.++.. |-..++.. .+. .+... + +
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~--~~~~~g~~~vda-pv~g~~~~-----~~~----~~~~i-~-~ 143 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQG--LVNQAGGHYVKG-MIVAYPRN-----VGH----RESHS-I-H 143 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHH--HHHHTTCEEEEE-EEESCGGG-----TTC----TTCEE-E-E
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-ccccCccc-----ccC----CceEE-E-E
Confidence 567776 5644 5789999888765432 1111 011245677753 53322211 110 12322 2 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhccc-ccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Q 013877 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT- 343 (434)
Q Consensus 266 ~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~-Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~- 343 (434)
.. +.++.+.+..++..+|+. ++....-++... .++. .++.+...++.| ++..+.+.|++++..+....+...
T Consensus 144 gg--~~~~~~~~~~ll~~lg~~-~~~~~~g~~~g~g~~~k--~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~~~~~~~ 217 (306)
T 3l6d_A 144 TG--DREAFEQHRALLEGLAGH-TVFLPWDEALAFATVLH--AHAFAAMVTFFE-AVGAGDRFGLPVSKTARLLLETSRF 217 (306)
T ss_dssp EE--CHHHHHHHHHHHHTTCSE-EEECCHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHhcCC-EEEecCCCCccHHHHHH--HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHhhhh
Confidence 33 478999999999999763 222100010000 0111 122222333444 455689999999999886665542
Q ss_pred HHHHHHHHHh
Q 013877 344 GIISKIISTQ 353 (434)
Q Consensus 344 Gli~~li~e~ 353 (434)
| ...++...
T Consensus 218 ~-~s~~~~~~ 226 (306)
T 3l6d_A 218 F-VADALEEA 226 (306)
T ss_dssp H-HHHHHHHH
T ss_pred c-ccHHHHHH
Confidence 2 34444443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-12 Score=124.15 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch-H
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~-a 190 (434)
+||+|||+|.||.++|++|.+. |++|++++++.++ .+.+.+.|+.. ..+++|+++ +|+||+++|+. .
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIEA-MTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTTT-SHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999999 9999887766444 45566678775 578999999 99999999965 5
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhh---hhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
..++++++.+.+++|++|++.+...... +.+ .....++.++. +|-..+.. .-.. |...++ +..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~~~-~gg 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELAR--DLKARDIHIVD-APVSGGAA---AAAR-------GELATM-VGA 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHH--HHGGGTCEEEE-CCEESCHH---HHHH-------TCEEEE-EEC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHH---HHhc-------CCccEE-ecC
Confidence 5678999999999999998887654321 111 01123566664 46333322 1122 333323 333
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A 334 (434)
+.+..+.+..++..+|.. ++...-...-..-.+..... .+...+++.-++..+.+.|+++++.
T Consensus 150 --~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~~-~~~~~~~~~E~~~l~~~~G~d~~~~ 212 (296)
T 3qha_A 150 --DREVYERIKPAFKHWAAV-VIHAGEPGAGTRMKLARNML-TFTSYAAACEAMKLAEAAGLDLQAL 212 (296)
T ss_dssp --CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred --CHHHHHHHHHHHHHHcCC-eEEcCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 468899999999999963 21110000000000111111 1111123334556788999999877
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=119.81 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=120.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc--cCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
+||+||| +|.||.++++.|.+. |++|++.+|+.++..+.....|... .+-...+..++++++|+||+++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh
Confidence 4899999 999999999999998 9998887776443322222223000 000024677889999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-Eeccch--------------hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhccc
Q 013877 189 AAQADNYEKIFSCMKPNSILG-LSHGFL--------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~-~s~G~~--------------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~ 253 (434)
....++++++.+.++ +++|+ .+.|+. ...+.+ .+| +..++.+||+.|+.......
T Consensus 75 ~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~----- 144 (212)
T 1jay_A 75 EHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD----- 144 (212)
T ss_dssp HHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT-----
T ss_pred hhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC-----
Confidence 998899988888774 77665 556675 344433 334 46899999999988742111
Q ss_pred ccCCC-ceEEEeecCCCCHHHHHHHHHHHHHh-CCCcccccchhhhcccccccchhhhhchHHHHHHHHH
Q 013877 254 INGAG-INSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (434)
Q Consensus 254 ~~G~G-v~aliav~qdvsg~a~e~a~~la~ai-G~~~~iettf~~E~~~Dlfge~tvL~G~~~aliea~~ 321 (434)
+.| +.. +.... +.++.+.+..++..+ |.. .+.. . -.+....+-++.|.++...+
T Consensus 145 --~~~~~~~-~~~g~--~~~~~~~v~~l~~~~~G~~-~~~~-------~-~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 145 --EKFDWDV-PVCGD--DDESKKVVMSLISEIDGLR-PLDA-------G-PLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp --CCCCEEE-EEEES--CHHHHHHHHHHHHHSTTEE-EEEE-------E-SGGGHHHHHTHHHHHHHHHH
T ss_pred --CCCCccE-EEECC--cHHHHHHHHHHHHHcCCCC-ceec-------c-chhHHHHhcchHHHHHHHHH
Confidence 123 343 33333 578999999999999 863 1111 1 13455667788888776665
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=134.88 Aligned_cols=148 Identities=16% Similarity=0.055 Sum_probs=104.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----cCccccCCCcCCHHhhhcc---CCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~~~~~~~Ea~~~---ADiVi 183 (434)
++|||||+|+||.++|++|.++ |++|.+++|..++ .+...+ .|+.. ..+++|+++. +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSK-VDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHH-HHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 6899999999999999999999 9999888777554 344444 46664 5688898887 99999
Q ss_pred Eeecch-HHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
++||+. ...++++++.+.+++|++|++...... ..+.+ . ....++.++ .+|-..++. .... |.
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~-~-l~~~g~~~v-~~pVsgg~~---~a~~-------G~ 146 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE-E-LKKKGILFV-GSGVSGGEE---GARY-------GP 146 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHH---HHHH-------CC
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH-H-HHHcCCcee-CCCcccChh---Hhhc-------CC
Confidence 999994 677899999999999998886654321 12221 0 112356666 457333332 1222 34
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++ +.. +.++.+.+..++..+|..
T Consensus 147 -~im-~gg--~~e~~~~v~~ll~~~g~~ 170 (497)
T 2p4q_A 147 -SLM-PGG--SEEAWPHIKNIFQSISAK 170 (497)
T ss_dssp -EEE-EEE--CGGGHHHHHHHHHHHSCE
T ss_pred -eEE-ecC--CHHHHHHHHHHHHHhcCc
Confidence 323 343 567889999999999963
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-12 Score=121.28 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=123.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch-H
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~-a 190 (434)
+||+|||+|.||.+++.+|.+. |++|.++++. .+..+...+.|+.. ..+.+++++++|+||+++|+. .
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 5899999999999999999998 9998766654 33445555667764 567889999999999999954 4
Q ss_pred HHHHH---HHHHhcCCCCcEEEEec-cch--hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 191 QADNY---EKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 191 ~~~vl---~eI~~~Lk~g~iL~~s~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
...++ +++.+.+++|++|++.+ |.. ...+.+ .....++.++.. |-.+++.. ...+ ++..++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-pv~~~~~~---~~~~------~~~~~~- 141 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDA-PVSGGEPK---AIDG------TLSVMV- 141 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEEC-CEESHHHH---HHHT------CEEEEE-
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEEe-cCCCCHhH---HhcC------CEEEEe-
Confidence 56777 67889999999887554 432 223322 111235666643 54433321 1222 344432
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhh-hchHHH-HHHHHHH---HHHHcCCCHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-IVESLFR---RFTENGMNEDLAYKNTV 339 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL-~G~~~a-liea~~~---~~v~~Gl~~e~A~~~~~ 339 (434)
.. +.+..+.+..++..+|.. ++.. .+.... ...-+ .+...+ ++.++.| .+++.|+++++++....
T Consensus 142 -~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~---~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 142 -GG--DKAIFDKYYDLMKAMAGS-VVHT---GDIGAG---NVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp -ES--CHHHHHHHHHHHHTTEEE-EEEE---ESTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred -CC--CHHHHHHHHHHHHHHcCC-eEEe---CCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 578889999999999963 1111 111111 11101 122221 3344444 48999999998888665
Q ss_pred HHH
Q 013877 340 ECI 342 (434)
Q Consensus 340 e~l 342 (434)
++.
T Consensus 212 ~~~ 214 (299)
T 1vpd_A 212 GGL 214 (299)
T ss_dssp TST
T ss_pred ccC
Confidence 543
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=127.13 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=117.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCc-----------cccCCCcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-----------TEENGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-----------~~~~~~~~~~~Ea~~~AD 180 (434)
+||+|||+|+||.++|.+|.++ |++|.+++|..++ .+...+.|. .. ..++++ ++.+|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 7999999999999999999999 9999888776443 333344452 22 456777 88999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccchhhhhh---cc-cccCCCCccEEEeccCCChhhHHHHHhhccccc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQ---SM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~---~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~ 255 (434)
+||++||+.+..++++++.+ ++++|+ ++.|+.....+ +. .-.++ ....++.+|+.+...
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~------------ 146 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV------------ 146 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH------------
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH------------
Confidence 99999999888899887766 677665 44587542111 00 00123 224778999987665
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccc-------------hhh----------hhch
Q 013877 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE-------------RGI----------LLGA 312 (434)
Q Consensus 256 G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge-------------~tv----------L~G~ 312 (434)
+.|.+..+.+..+ + .+.+..++...|.. + ....|+++. .++ +...
T Consensus 147 ~~g~~~~~~~g~~-~---~~~~~~ll~~~g~~-~-------~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~ 214 (335)
T 1z82_A 147 AKKLPTAVTLAGE-N---SKELQKRISTEYFR-V-------YTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAAL 214 (335)
T ss_dssp HTTCCEEEEEEET-T---HHHHHHHHCCSSEE-E-------EEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hCCCceEEEEEeh-h---HHHHHHHhCCCCEE-E-------EecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHH
Confidence 2455433333322 1 56677888777743 1 111122110 011 1122
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 313 VHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 313 ~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
...++..+.+.+.+.|++++..+.
T Consensus 215 ~~~~~~E~~~la~a~G~~~~~~~~ 238 (335)
T 1z82_A 215 ETRGIYEIARFGMFFGADQKTFMG 238 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCChhhhcc
Confidence 223666678889999999987654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-12 Score=126.99 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=102.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------C--CCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------N--GTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------~--~~~~~~~Ea~~~ADi 181 (434)
+||+|||+|+||.++|.+|.++ |++|.+++|... ..+...+.|.... . ....++.++++++|+
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDv 88 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEI 88 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCE
Confidence 3999999999999999999998 999887776533 3344444331000 0 013577888999999
Q ss_pred EEEeecchHHHHHHHH----HHhcCCC-CcEEEEec-cchhhhh---hcc-cccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 182 VLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLGHL---QSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 182 ViLavpd~a~~~vl~e----I~~~Lk~-g~iL~~s~-G~~i~~~---~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
||+++|+....+++.+ |.+++++ +++|+... |+..... .+. ...++.....++.+|+.+...
T Consensus 89 Vilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~-------- 160 (366)
T 1evy_A 89 ILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV-------- 160 (366)
T ss_dssp EEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH--------
T ss_pred EEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH--------
Confidence 9999999888899998 9999988 88766544 8754211 000 002232223678889886543
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHh
Q 013877 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (434)
Q Consensus 252 ~~~~G~Gv~aliav~qdvsg~a~e~a~~la~ai 284 (434)
+.|.+.++.+. ..+.+..+.+..++...
T Consensus 161 ----~~g~~~~~~~~-~~~~~~~~~v~~ll~~~ 188 (366)
T 1evy_A 161 ----ATGVFTCVSIA-SADINVARRLQRIMSTG 188 (366)
T ss_dssp ----HTTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred ----HhCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence 13555433333 33567888888999988
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=124.33 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=105.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc---C-------CCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---~-------~~~~~~~Ea~~~ADi 181 (434)
+||+|||+|+||.++|..|.++ |++|.++.|.. ...+...+.|.... + ....+++++++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~-~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYES-DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCH-HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7899999999999999999999 99988777753 33444444442110 0 013578899999999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccchhh------hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i~------~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~ 254 (434)
||+++|++...+++++|.++++++++|+ .+.|+... .+.+ .+|...-.+...|+......
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev~---------- 169 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEVA---------- 169 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHHH----------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHHH----------
Confidence 9999999999999999999999998664 56777643 2322 22322235678887765441
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 255 ~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
.|.+..+.+.. .+.+..+.+..++...|.
T Consensus 170 --~g~pt~~via~-~~~~~~~~v~~lf~~~~~ 198 (356)
T 3k96_A 170 --ANLPTAVSLAS-NNSQFSKDLIERLHGQRF 198 (356)
T ss_dssp --TTCCEEEEEEE-SCHHHHHHHHHHHCCSSE
T ss_pred --cCCCeEEEEec-CCHHHHHHHHHHhCCCCe
Confidence 45655444443 245667777777776664
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=121.51 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=121.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||+|||+|.||.++|.+|.+ |++|.++++...+ .+...+.|+.. .. ..++++++|+||+++|+..
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~~-~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFEK-ALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTHH-HHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHHH-HHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 4789999999999999999863 5678777665443 34444446653 33 6788899999999999776
Q ss_pred -HHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 013877 191 -QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (434)
Q Consensus 191 -~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~ 266 (434)
..++++++.+.+++|++|++.+... ...+.+ .....++.++.. |..+++. .... |...++. .
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-p~~~~~~---~~~~-------g~~~~~~-~ 133 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLDA-PVSGGTS---GAEA-------GTLTVML-G 133 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEEC-CEESHHH---HHHH-------TCEEEEE-E
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEe-cCCCChh---HHhh-------CCeEEEE-C
Confidence 5678888999999999887665432 222222 111236677765 8665553 2223 3444343 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH----HHHHHHHH---HHHcCCCHHHHHHHHH
Q 013877 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRR---FTENGMNEDLAYKNTV 339 (434)
Q Consensus 267 qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a----liea~~~~---~v~~Gl~~e~A~~~~~ 339 (434)
. +.+..+.+..++ .+|.. ++.. .+. +....+..+.++ ++.++.|. +.+.|+++++++....
T Consensus 134 ~--~~~~~~~~~~ll-~~g~~-~~~~---~~~-----~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 201 (289)
T 2cvz_A 134 G--PEEAVERVRPFL-AYAKK-VVHV---GPV-----GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201 (289)
T ss_dssp S--CHHHHHHHGGGC-TTEEE-EEEE---EST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred C--CHHHHHHHHHHH-hhcCC-eEEc---CCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 2 577888889999 98853 1111 111 111112122222 34444444 8899999998877665
Q ss_pred HHH
Q 013877 340 ECI 342 (434)
Q Consensus 340 e~l 342 (434)
++.
T Consensus 202 ~~~ 204 (289)
T 2cvz_A 202 ASS 204 (289)
T ss_dssp TST
T ss_pred ccC
Confidence 544
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-12 Score=123.26 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=103.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCccccC-------CCcC--CHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~-------~~~~--~~~Ea~~~ADi 181 (434)
+||+|||+|+||.++|.+|.++ |++|++.+|. +.+..+...+.|..... .... ++.++++++|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~ 74 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence 5899999999999999999999 9998877761 23334555555531100 0123 56788899999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEec-cc------hhhhhhcccc-cCCC-CccEEEeccCCChhhHHHHHhhcc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSMGL-DFPK-NIGVIAVCPKGMGPSVRRLYVQGK 252 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~-G~------~i~~~~~~~i-~~~~-di~VI~v~Pn~pg~~vr~ly~~G~ 252 (434)
||+++|+....++++++.+ ++++++|++.. |+ ....+.+..- .++. ..-.++.+|+.+...
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~--------- 144 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV--------- 144 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH---------
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH---------
Confidence 9999999999999999999 99999876554 87 2222222000 1111 113567888775433
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 253 ~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 145 ---~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~ 175 (335)
T 1txg_A 145 ---AKRMPTTVVFSS-PSESSANKMKEIFETEYFG 175 (335)
T ss_dssp ---HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred ---HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEE
Confidence 135543333333 3567888888999888853
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=122.81 Aligned_cols=187 Identities=15% Similarity=0.051 Sum_probs=115.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCc------hhHHHHHHcCccccCCCcC-CHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~------~s~~~A~~~G~~~~~~~~~-~~~Ea~~~ADiVi 183 (434)
+||+|||+|+||.++|++|.+. | ++|+++++... ...+.+.+.|. . . +++|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 99888777531 23444455565 2 4 6789999999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccC-CChhhHHHHHhhcccccCCCc
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn-~pg~~vr~ly~~G~~~~G~Gv 259 (434)
+++|+....++++++.+.+++|++|++.++.... .+.+ .....++.++- +|- +|... ..| ..
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~--~l~~~g~~~~d-~pv~g~~~a-----~~g------~l 158 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAG--AIATGKGSFVE-GAVMARVPP-----YAE------KV 158 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHH--HHHTSSCEEEE-EEECSCSTT-----TGG------GS
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-ccCCCCchh-----hcC------CE
Confidence 9999999999889999999999999888776432 2211 01123455543 231 11111 122 23
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccch-hhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHH
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf-~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e 332 (434)
+. ++-..+ + +.+..++..+|.. ++...- ...-..-.+..++.+ ....+++--++..+.+.|++++
T Consensus 159 ~i-~vgg~~----~-~~~~~ll~~~g~~-v~~~g~~~g~a~~~Kl~~N~~~-~~~~~~~~E~~~la~~~Gid~~ 224 (317)
T 4ezb_A 159 PI-LVAGRR----A-VEVAERLNALGMN-LEAVGETPGQASSLKMIRSVMI-KGVEALLIEALSSAERAGVTER 224 (317)
T ss_dssp EE-EEESTT----H-HHHHHHHHTTTCE-EEEEESSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred EE-EEeCCh----H-HHHHHHHHHhCCC-eEEeCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 33 332322 2 7888999999863 222210 000000011122222 2222344445678889999994
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-11 Score=119.83 Aligned_cols=152 Identities=9% Similarity=0.018 Sum_probs=103.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCch----hHHHHHHcCccc--------cCC--CcC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAGFTE--------ENG--TLG 170 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G-------~~Vivg~r~~~~----s~~~A~~~G~~~--------~~~--~~~ 170 (434)
+||+|||+|+||.++|.+|.++ | ++|.+++|.... ..+...+.+... ..+ ...
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 6899999999999999999998 8 888877776440 233333222100 000 135
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccchh---------hhhhcccccCCCCccEEEeccCCC
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL---------GHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i---------~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
+++++++++|+||+++|+....+++++|.++++++++|+ .+.|+.+ ..+.+ .++.+ ..++.+|+.+
T Consensus 83 ~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~~v~~gp~~a 158 (354)
T 1x0v_A 83 DVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGIP-MSVLMGANIA 158 (354)
T ss_dssp SHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTCC-EEEEECSCCH
T ss_pred CHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCCC-EEEEECCCcH
Confidence 678889999999999999988999999999999998765 5557752 11121 12222 4678899887
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
... +.|.+..+.+. ..+.+..+.+..++...|.
T Consensus 159 ~~v------------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~ 191 (354)
T 1x0v_A 159 SEV------------ADEKFCETTIG-CKDPAQGQLLKELMQTPNF 191 (354)
T ss_dssp HHH------------HTTCCEEEEEE-CSSHHHHHHHHHHHCBTTE
T ss_pred HHH------------HhcCCceEEEE-ECCHHHHHHHHHHhCCCCE
Confidence 644 14555434433 3356778888888888875
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-11 Score=121.54 Aligned_cols=148 Identities=10% Similarity=-0.008 Sum_probs=103.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCc-----hhHHHHHHcC--------------ccc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGS-----RSFAEARAAG--------------FTE 164 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-------~~Vivg~r~~~-----~s~~~A~~~G--------------~~~ 164 (434)
|+||+|||+|+||.++|.+|.++ | ++|.+++|... + .+...+.+ +..
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~ 93 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERM-VDIINNKHENTKYLKGVPLPHNIVA 93 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCH-HHHHHHHCBCTTTSTTCBCCTTEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHH-HHHHHhcCcccccCCcccCcCCeEE
Confidence 36899999999999999999998 8 88888777644 3 33333322 221
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHh----cCCCCcEEEEe-ccchhh---------hhhcccccCCCCc
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLS-HGFLLG---------HLQSMGLDFPKNI 230 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~----~Lk~g~iL~~s-~G~~i~---------~~~~~~i~~~~di 230 (434)
..+++++++++|+||++||+....+++++|.+ .++++++|+.. .|+... .+.+ .++.+
T Consensus 94 ----~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~~~~~- 165 (375)
T 1yj8_A 94 ----HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---FLNIP- 165 (375)
T ss_dssp ----ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---HSSSC-
T ss_pred ----ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---HcCCC-
Confidence 34677889999999999999988999999999 99999877644 476531 1121 12322
Q ss_pred cEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 231 ~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
-.++.+|+.+... +.|.+..+.+.. .+.+..+.+..++...|.
T Consensus 166 ~~v~~gp~~a~~v------------~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~ 208 (375)
T 1yj8_A 166 CSALSGANIAMDV------------AMENFSEATIGG-NDKDSLVIWQRVFDLPYF 208 (375)
T ss_dssp EEEEECSCCHHHH------------HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTE
T ss_pred EEEEeCCchHHHH------------HhCCCeEEEEec-CCHHHHHHHHHHhCCCCe
Confidence 3577889886544 135555343332 356778888888888775
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=121.38 Aligned_cols=194 Identities=16% Similarity=0.093 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch-H
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~-a 190 (434)
+||+|||+|.||.++|++|.+. |++|++++|. ....+...+.|+.. ..+.+|+++++|+||+++|+. .
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 100 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEA------GYALQVWNRT-PARAASLAALGATI----HEQARAAARDADIVVSMLENGAV 100 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEECCCHHH
Confidence 8999999999999999999999 9998877665 34455556667764 578999999999999999965 5
Q ss_pred HHHHHH--HHHhcCCCCcEEEEeccchhhhhhcc-cccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecC
Q 013877 191 QADNYE--KIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 191 ~~~vl~--eI~~~Lk~g~iL~~s~G~~i~~~~~~-~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
..+++. ++.+.+++|++|++.+.......+.. ......++.++. +|-..+.. .-.. |-..++ +..
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~i~-~gg 168 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD-TPVSGGTV---GAEQ-------GTLVIM-AGG 168 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECHHH---HHHH-------TCEEEE-EES
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHh---HHhc-------CCeeEE-eCC
Confidence 567777 78889999999988876543211100 001123566665 46443332 1122 233323 333
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHH----HHHHHHHHHHHHcCCCHHHHHHHH
Q 013877 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVH----GIVESLFRRFTENGMNEDLAYKNT 338 (434)
Q Consensus 268 dvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~----aliea~~~~~v~~Gl~~e~A~~~~ 338 (434)
+.++.+.+..++..+ .. ++... +.. -++.. .+.+... +++.-++..+.+.|+++++.+...
T Consensus 169 --~~~~~~~~~~ll~~~-~~-~~~~g---~~g---~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~ 234 (320)
T 4dll_A 169 --KPADFERSLPLLKVF-GR-ATHVG---PHG---SGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAI 234 (320)
T ss_dssp --CHHHHHHHHHHHHHH-EE-EEEEE---STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc-CC-EEEeC---Ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 468899999999999 42 22111 110 01111 1122222 233445566789999999887643
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=117.77 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH-
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a- 190 (434)
+||+|||+|.||.+++.+|.+. |++|.++++. ....+...+.|+.. ..+.+++++++|+|++++|+..
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLM-EANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7899999999999999999998 9998776654 33344455557764 5678899999999999998655
Q ss_pred HHHHHH---HHHhcCCCCcEEEE-eccc--hhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 191 QADNYE---KIFSCMKPNSILGL-SHGF--LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 191 ~~~vl~---eI~~~Lk~g~iL~~-s~G~--~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
...++. ++.+.+++|++|+. +.|. ....+.+ .....++.++. +|..++.. .+.. |...+++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~--~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~~ 140 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK--VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIMV 140 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH--HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEEE
Confidence 567775 78889999998765 4454 2233322 01113556664 57555542 2333 3433343
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHHH-HHHH---HHHHHHHcCCCHHHHHHHHH
Q 013877 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVES---LFRRFTENGMNEDLAYKNTV 339 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~a-liea---~~~~~v~~Gl~~e~A~~~~~ 339 (434)
.. +.+..+.+..++..+|..... . .+... +... .+.+.... ++.+ ++..+.+.|+++++++....
T Consensus 141 -~g--~~~~~~~v~~ll~~~g~~~~~-~---~~~g~---~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 210 (301)
T 3cky_A 141 -GA--SEAVFEKIQPVLSVIGKDIYH-V---GDTGA---GDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIG 210 (301)
T ss_dssp -ES--CHHHHHHHHHHHHHHEEEEEE-E---ESTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -CC--CHHHHHHHHHHHHHhcCCEEE-e---CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 578889999999999964111 1 01000 0000 01111111 2222 33448999999998877655
Q ss_pred HHH
Q 013877 340 ECI 342 (434)
Q Consensus 340 e~l 342 (434)
++.
T Consensus 211 ~~~ 213 (301)
T 3cky_A 211 KSS 213 (301)
T ss_dssp TST
T ss_pred cCC
Confidence 543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-11 Score=125.27 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=104.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhcc---CCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~---ADiViLa 185 (434)
++|+|||+|+||.++|++|.+. |++|.+++|..++..+...+. |+.. ..+++|+++. +|+||++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999999 999888777644433333332 6654 5688898876 9999999
Q ss_pred ecch-HHHHHHHHHHhcCCCCcEEEEec-cch--hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceE
Q 013877 186 ISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (434)
Q Consensus 186 vpd~-a~~~vl~eI~~~Lk~g~iL~~s~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~a 261 (434)
||+. ...++++++.+.+++|++|++.. |.. ...+.+ .....++.++ .+|...+... ... |...
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~~-------g~~i 142 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA--ELADSGINFI-GTGVSGGEKG---ALL-------GPSM 142 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HTTTSSCEEE-EEEECSHHHH---HHH-------CCCE
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCeEE-CCCCCCChhh---hcc-------CCeE
Confidence 9995 56789999999999999887654 442 222322 1222456666 4686555431 222 3432
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 262 liav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+ +.. +.++.+.+..++..+|..
T Consensus 143 -~-~gg--~~~~~~~v~~ll~~~g~~ 164 (474)
T 2iz1_A 143 -M-PGG--QKEAYDLVAPIFEQIAAK 164 (474)
T ss_dssp -E-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -E-ecC--CHHHHHHHHHHHHHHhcc
Confidence 3 333 578899999999999964
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=117.51 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=122.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||+|||+|.||.++|.+|.+. |++|++++ ..+ ..+...+.|+.. ..+.+++++++|+||+++|+..
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~~~-~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT-IGP-VADELLSLGAVN----VETARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-SSC-CCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-CHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence 47999999999999999999998 99987665 433 344455557654 5678899999999999998877
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 Q-ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~-~~vl~---eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+ ..++. ++.+.+++|++|++.+... ...+.+ .....++.++ -+|...++. .... |...++
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~-~~p~~~~~~---~a~~-------g~~~~~ 137 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ--RVNEMGADYL-DAPVSGGEI---GARE-------GTLSIM 137 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEE-ECCEESHHH---HHHH-------TCEEEE
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-EccCCCCHH---HHHc-------CCeEEE
Confidence 5 57887 7888899999877554332 222322 0111244554 335433322 2223 343433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh-hhhchHHH-HHHHHH---HHHHHcCCCHHHHHHHH
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVESLF---RRFTENGMNEDLAYKNT 338 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t-vL~G~~~a-liea~~---~~~v~~Gl~~e~A~~~~ 338 (434)
+ .. +.+..+.+..++..+|.. ++.. .+.... ... .+.+...+ ++.++. ..+.+.|+++++++...
T Consensus 138 ~-~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~---~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 207 (295)
T 1yb4_A 138 V-GG--EQKVFDRVKPLFDILGKN-ITLV---GGNGDG---QTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL 207 (295)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEEE-EEEE---ESTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-EEEe---CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 578889999999999963 1111 111111 111 11222222 333444 44899999999887765
Q ss_pred HHHH
Q 013877 339 VECI 342 (434)
Q Consensus 339 ~e~l 342 (434)
.++.
T Consensus 208 ~~~~ 211 (295)
T 1yb4_A 208 MGGF 211 (295)
T ss_dssp TSSS
T ss_pred HcCC
Confidence 5544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-11 Score=121.84 Aligned_cols=151 Identities=16% Similarity=0.116 Sum_probs=108.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccC---CEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A---DiVi 183 (434)
-+++ +||+|||+|.||.++|++|.+. |++|++++|. ....+.+.+.|+.. ..+++|+++++ |+||
T Consensus 19 Mm~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi 86 (358)
T 4e21_A 19 YFQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLN-VNAVQALEREGIAG----ARSIEEFCAKLVKPRVVW 86 (358)
T ss_dssp ---C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEE
T ss_pred hhcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEE
Confidence 3445 8999999999999999999999 9998877665 34456666677764 57899999999 9999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
+++|+....++++++.+.+++|++|++.+..... .+.+ .....++.++- +|-.-+.. .-+. |.
T Consensus 87 ~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vd-apVsGg~~---~a~~-------G~- 152 (358)
T 4e21_A 87 LMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVD-VGTSGGIF---GLER-------GY- 152 (358)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEE-EEEECGGG---HHHH-------CC-
T ss_pred EeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEe-CCCCCCHH---HHhc-------CC-
Confidence 9999997778999999999999999887765421 1111 12234667664 35322222 1122 33
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
. |.+.. +.++.+.++.++..+|.
T Consensus 153 ~-im~GG--~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 153 C-LMIGG--EKQAVERLDPVFRTLAP 175 (358)
T ss_dssp E-EEEES--CHHHHHHTHHHHHHHSC
T ss_pred e-eeecC--CHHHHHHHHHHHHHhcc
Confidence 3 33444 46899999999999994
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=116.63 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=70.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||+|+||.++|++|.+. |++|++.++. ..+..+...+.|+. .+.+++++++|+||+++|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 4899999999999999999998 9998775442 23334444455654 356788999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+.+.+.++.+.+++ +|++..+..
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~ 91 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNIS 91 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCC
T ss_pred HHHHHHHHHHhcCc--EEEEccCCC
Confidence 87777788888877 777776664
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=136.88 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=120.4
Q ss_pred hhhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC
Q 013877 92 YIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 92 ~~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~ 170 (434)
.-+|.|+|.... ....+.| ++|||||+|+||.++|++|+.. |++|+++++.. ..+.+.+.|+.. .
T Consensus 123 ~~~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~~-----~ 188 (529)
T 1ygy_A 123 ASLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIEL-----L 188 (529)
T ss_dssp HHHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCEE-----C
T ss_pred HHHHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcEE-----c
Confidence 346778896432 2357899 9999999999999999999988 99987666543 345567778763 4
Q ss_pred CHHhhhccCCEEEEeecch-HHHHHHHH-HHhcCCCCcEEEEec-cchhh------hhhcccccCCCCccEEEeccCCCh
Q 013877 171 DIYETISGSDLVLLLISDA-AQADNYEK-IFSCMKPNSILGLSH-GFLLG------HLQSMGLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~-a~~~vl~e-I~~~Lk~g~iL~~s~-G~~i~------~~~~~~i~~~~di~VI~v~Pn~pg 241 (434)
+.+|++++||+|++++|+. ....++.+ +.+.||+|++|++++ |-.+. .+.+..+ -...+||+..+|. +.
T Consensus 189 ~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i-~ga~lDv~~~eP~-~~ 266 (529)
T 1ygy_A 189 SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV-RAAGLDVFATEPC-TD 266 (529)
T ss_dssp CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE-EEEEESSCSSSSC-SC
T ss_pred CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCc-cEEEEeeccCCCC-CC
Confidence 8899999999999999988 55677765 888999999988664 42211 1111000 0114678888884 32
Q ss_pred hhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH-----HHHHHHHhCCC
Q 013877 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSP 287 (434)
Q Consensus 242 ~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~-----a~~la~aiG~~ 287 (434)
+ .+|. +-+.++++|.. .+.++.+. +..+...+++.
T Consensus 267 ~---~L~~--------~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 267 S---PLFE--------LAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp C---GGGG--------CTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred c---hHHh--------CCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 2343 46888999987 67777765 77888888875
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=127.72 Aligned_cols=148 Identities=17% Similarity=0.054 Sum_probs=103.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----cCccccCCCcCCHHhhhc---cCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETIS---GSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~~~~~~~Ea~~---~ADiVi 183 (434)
++|+|||+|+||.++|++|.+. |++|.+++|..++ .+...+ .|+.. ..+++|+++ ++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 5799999999999999999999 9998887776544 344444 45553 567888874 899999
Q ss_pred Eeecch-HHHHHHHHHHhcCCCCcEEEEe-ccchh--hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCc
Q 013877 184 LLISDA-AQADNYEKIFSCMKPNSILGLS-HGFLL--GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~g~iL~~s-~G~~i--~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv 259 (434)
++||+. ...++++++.+++++|++|++. .|... ..+.+ .....++.++ .+|...+... -. .|.
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~g~~~~---a~-------~g~ 138 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFV-GSGVSGGEDG---AR-------YGP 138 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHHH---HH-------HCC
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEe-CCCCCCChhh---hc-------cCC
Confidence 999996 6678999999999999988765 34432 12221 0112356666 5676544331 12 244
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.++ +.. +.++.+.+..++..+|..
T Consensus 139 -~i~-~gg--~~e~~~~v~~ll~~~g~~ 162 (482)
T 2pgd_A 139 -SLM-PGG--NKEAWPHIKAIFQGIAAK 162 (482)
T ss_dssp -EEE-EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -eEE-eCC--CHHHHHHHHHHHHHhhhh
Confidence 323 333 356888899999999974
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-12 Score=123.43 Aligned_cols=161 Identities=15% Similarity=0.084 Sum_probs=109.8
Q ss_pred hhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 92 ~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
.-+|+|+|.... ...+.| ++|||||+|+||.++|++|+.. |++|+++++...+ ..+.+.|+.. .+
T Consensus 125 ~~~~~g~w~~~~-~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~~ 189 (313)
T 2ekl_A 125 ALAKSGIFKKIE-GLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA-----VS 189 (313)
T ss_dssp HHHHTTCCCCCC-CCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----CC
T ss_pred HHHHcCCCCCCC-CCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee-----cC
Confidence 346778896333 368999 9999999999999999999988 9998776665433 3466778763 47
Q ss_pred HHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEeccchh-------hhhhcccccCCCCccEEEeccCCChh
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
.++++++||+|++++|.... ..++ ++..+.||+|++|+.++--.+ ..+.+..+ -...+||+..+|.. ..
T Consensus 190 l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i-~ga~lDv~~~eP~~-~~ 267 (313)
T 2ekl_A 190 LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKV-YAYATDVFWNEPPK-EE 267 (313)
T ss_dssp HHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCE-EEEEESCCSSSSCC-SH
T ss_pred HHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCC-cEEEEecCCCCCCC-Cc
Confidence 89999999999999997664 3555 457788999998886643221 11211011 01235788888854 33
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a 277 (434)
....+|.. -+.++++|.. .|.++.+..
T Consensus 268 ~~~~L~~~--------~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 268 WELELLKH--------ERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp HHHHHHHS--------TTEEECCSCTTCSHHHHHHH
T ss_pred ccchHhhC--------CCEEECCccCcCcHHHHHHH
Confidence 22345653 5788999974 444554433
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-12 Score=122.95 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=101.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHH-cCccccC--CC-------cCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~-~G~~~~~--~~-------~~~~~Ea~~~AD 180 (434)
+||+|||+|+||.++|.+|.++. ...-| ++|++.+| ++..+...+ .|+...+ +. ..+..+.++.+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~-~~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRA-AATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHH-HHTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCc-cccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 58999999999999999998640 00004 68877766 344455555 6775411 00 013345678999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEE-Eeccchh-hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCC
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i-~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~G 258 (434)
+||+++|+....++++++.++++++++|+ +..|+.. ..+.+ .+|+. .+++.+|+.+.......... ..+.|
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~pg~~~---~~~~g 158 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSAPGLIT---LEADR 158 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEETTEEE---EEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcCCCEEE---EcCCC
Confidence 99999999999999999999998888665 5678765 34433 34443 56666665544331000000 01233
Q ss_pred ceEEEeec-CCCCHHHHHHHHHHHHHhCCC
Q 013877 259 INSSFAVH-QDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 259 v~aliav~-qdvsg~a~e~a~~la~aiG~~ 287 (434)
...+++.. ...+.+.. .+..++...|..
T Consensus 159 ~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~ 187 (317)
T 2qyt_A 159 ELFYFGSGLPEQTDDEV-RLAELLTAAGIR 187 (317)
T ss_dssp EEEEEECCSSSCCHHHH-HHHHHHHHTTCC
T ss_pred ceEEEcCCCCCCcCHHH-HHHHHHHHCCCC
Confidence 33324332 33345555 778899999864
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-11 Score=123.96 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=103.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-------ccccCCCcCCHHhhhcc---CCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~~~~~~~Ea~~~---ADi 181 (434)
+||+|||+|+||.++|++|.+. |++|.+++|..++..+...+.| +.. ..+++|+++. +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999999 9998887776444434444445 433 5678888874 999
Q ss_pred EEEeecch-HHHHHHHHHHhcCCCCcEEEEec-cch--hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCC
Q 013877 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (434)
Q Consensus 182 ViLavpd~-a~~~vl~eI~~~Lk~g~iL~~s~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~ 257 (434)
||++||+. ...++++++.+.+++|++|++.. |.. ...+.+ . ....++.++. +|...+... ...
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~-~-l~~~g~~~v~-~pv~gg~~~---a~~------- 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLG-MGISGGEEG---ARK------- 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEE-EEEESHHHH---HHH-------
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH-H-HHHCCCeEEE-eeccCCHHH---Hhc-------
Confidence 99999995 66789999999999999877554 542 122222 1 1123566663 576554431 222
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 258 GINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 258 Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
|. .++ +.. +.++.+.+..++..+|..
T Consensus 139 g~-~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 GP-AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp CC-EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred CC-eEe-ccC--CHHHHHHHHHHHHHhccc
Confidence 34 323 333 478899999999999974
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=116.77 Aligned_cols=149 Identities=16% Similarity=0.087 Sum_probs=96.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---Cc--cccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~--~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||+|||+|+||.++|.+|.++ |++|.+.+|...+..+ .... |. .. .-...+ .++++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~~~-~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTAND-PDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEESC-HHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeeecC-ccccCCCCEEEEEe
Confidence 5899999999999999999999 9998887776432211 1111 11 00 001223 46788999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-Eeccchh-hhhhcccccCCC---C---ccEEEeccCCChhhHHHHHhhcccccCCC
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPK---N---IGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~i-~~~~~~~i~~~~---d---i~VI~v~Pn~pg~~vr~ly~~G~~~~G~G 258 (434)
|+....++++++.++++++++|+ ...|+.. ..+.+ .+++ + ....+.+| .+... +.|
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~~~~g~~~~~~~~~~p-~~~~~------------~~g 135 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQPLLMGTTTHAARRDGN-VIIHV------------ANG 135 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSCEEEEEECCEEEEETT-EEEEE------------ECC
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCCeEEEEEeEccEEcCC-EEEEe------------ccc
Confidence 99999999999999999988665 5677754 23333 2333 1 01234444 32221 356
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 259 v~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
... +.+.. .+.+..+.+..++..+|..
T Consensus 136 ~~~-i~~~~-~~~~~~~~~~~ll~~~g~~ 162 (291)
T 1ks9_A 136 ITH-IGPAR-QQDGDYSYLADILQTVLPD 162 (291)
T ss_dssp CEE-EEESS-GGGTTCTHHHHHHHTTSSC
T ss_pred ceE-EccCC-CCcchHHHHHHHHHhcCCC
Confidence 544 44322 2345667788999999865
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=6e-13 Score=124.04 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=104.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
.++ +||+|||+|+||.++|++|.+. |++|++++|... .+.....|+.. .+..++++++|+||+++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~~-----~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAEV-----LCYSEAASRSDVIVLAVH 82 (201)
Confidence 455 8999999999999999999998 888877766533 22333345542 377888999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-Eeccch--------hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCC
Q 013877 188 DAAQADNYEKIFSCMKPNSILG-LSHGFL--------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~-~s~G~~--------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~G 258 (434)
+....+++ ++.+ ++++++|+ .+.|+. ..++++ .++. ..+|+++||+|.......-..| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g------~ 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA------S 150 (201)
Confidence 98777776 5554 45677654 667774 234433 3343 4899999999987742111111 1
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 259 v~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
...+++ .. +.++++.+..++..+|..
T Consensus 151 ~~~~~~-g~--~~~~~~~v~~ll~~~G~~ 176 (201)
T 2yjz_A 151 RQVFVC-GN--DSKAKDRVMDIARTLGLT 176 (201)
Confidence 123233 33 467888999999999964
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-10 Score=124.58 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=132.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCcccc---------CCCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE---------NGTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~---------~~~~~ 170 (434)
++||+|||+|+||.+||.+|.++ |++|++.+++.+ ..+.+ .+.|.... -....
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 386 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 386 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence 58999999999999999999999 999887766533 23332 22342100 00023
Q ss_pred CHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
++ +++++||+||+++|+... .+++.++.++++++++|+ .++++.+..+.+ .....-+++..||..|.+.
T Consensus 387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~---- 458 (715)
T 1wdk_A 387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM---- 458 (715)
T ss_dssp SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc----
Confidence 55 778999999999997764 468889999999999875 567777765544 2223347999999887654
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhch-H-HHHHHHHHHHHH
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA-V-HGIVESLFRRFT 325 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~-~-~aliea~~~~~v 325 (434)
+-..-+..+...+.+..+.+..++..+|...+.-. +. .-| +++- + +.+.|+ . .++
T Consensus 459 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~----d~--~Gf-----i~Nril~~~~~Ea-~-~l~ 515 (715)
T 1wdk_A 459 ----------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN----DC--PGF-----LVNRVLFPYFGGF-A-KLV 515 (715)
T ss_dssp ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE----SC--TTT-----THHHHHHHHHHHH-H-HHH
T ss_pred ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEc----CC--CCh-----hhhHHHHHHHHHH-H-HHH
Confidence 11222445667788999999999999996421111 11 111 2222 1 224444 3 344
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 013877 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~ 359 (434)
+.|+++++..... ... .| --.++-..|++..+
T Consensus 516 ~~G~~~~~id~~~-~~~G~p~G-p~~l~D~vGld~~~ 550 (715)
T 1wdk_A 516 SAGVDFVRIDKVM-EKFGWPMG-PAYLMDVVGIDTGH 550 (715)
T ss_dssp HTTCCHHHHHHHH-HHHTCSSC-HHHHHHHHCHHHHH
T ss_pred HCCCCHHHHHHHH-HHcCCCCC-HHHHHHHhhHHHHH
Confidence 5699998765543 221 03 24455555664433
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=122.24 Aligned_cols=152 Identities=17% Similarity=0.061 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC-CCcCCHHhhhc---cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~Ea~~---~ADiViLavp 187 (434)
++|||||+|+||.++|++|.+. |++|++++|..++ .+...+.|..... ....+++|+++ ++|+||++||
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred CEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence 7899999999999999999999 9999888776544 4444443321000 00367888887 4999999999
Q ss_pred ch-HHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 188 DA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 188 d~-a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+. ...++++++.++|++|++|++.+.... ....+ .....++.++.. |-.-+.. .-+.| . + +
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pVsGg~~---gA~~G-------~-~-i 142 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GVSGGEE---GARYG-------P-S-L 142 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EEESHHH---HHHHC-------C-E-E
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-CccCCHH---HHhcC-------C-e-e
Confidence 96 566899999999999999988765432 11111 011346777753 6332222 22233 4 4 3
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 013877 264 AVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.+.. +.++.+.+..++..+|..
T Consensus 143 m~GG--~~ea~~~v~pll~~ig~~ 164 (484)
T 4gwg_A 143 MPGG--NKEAWPHIKTIFQGIAAK 164 (484)
T ss_dssp EEEE--CGGGHHHHHHHHHHHSCB
T ss_pred ecCC--CHHHHHHHHHHHHHhcCc
Confidence 3444 468899999999999964
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=119.75 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=108.3
Q ss_pred hhccCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~-~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|... .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ +.+.+.|+. ..+
T Consensus 124 ~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~ 189 (307)
T 1wwk_A 124 KMREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGK-----FVD 189 (307)
T ss_dssp HHTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCE-----ECC
T ss_pred HHHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCcc-----ccC
Confidence 4577888531 22367899 9999999999999999999988 9998776665433 456677876 347
Q ss_pred HHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEeccch-------hhhhhcccccCCCCccEEEeccCCChh
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~G~~-------i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
.++++++||+|++++|.... ..++ ++..+.||+|++|+.++--. ...+++ +.......||+..+|.-+.+
T Consensus 190 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~eP~~~~~ 268 (307)
T 1wwk_A 190 LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFEEEPLPKDH 268 (307)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCSSSSCCTTC
T ss_pred HHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCCCCCCCCCC
Confidence 89999999999999997664 4555 35778899999988654322 112222 11112356777777853333
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a 277 (434)
. +|. .-+.++++|.. .|.++.+..
T Consensus 269 ~---L~~--------~~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 269 P---LTK--------FDNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp G---GGG--------CTTEEECSSCTTCBHHHHHHH
T ss_pred h---HHh--------CCCEEECCccccCcHHHHHHH
Confidence 2 333 36788999874 444554443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=122.49 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=106.3
Q ss_pred hhhccCCccc----cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCchhHHHHHHcCccccC
Q 013877 92 YIVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEEN 166 (434)
Q Consensus 92 ~~~~~~~~~f----~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~~~~ 166 (434)
.-+|+|+|.. ......+.| ++|||||+|+||.++|++|+.. |++|+++++ ...+ ..+.+.|+..
T Consensus 124 ~~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~~g~~~-- 192 (320)
T 1gdh_A 124 KMIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEASYQATF-- 192 (320)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHHHTCEE--
T ss_pred HHHHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhhcCcEE--
Confidence 3467788851 112357899 9999999999999999999988 999877766 5333 3555667763
Q ss_pred CCcCCHHhhhccCCEEEEeecchH-HHHHH-HHHHhcCCCCcEEEEe-ccc--h----hhhhhcccccCCCCccEEEecc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLS-HGF--L----LGHLQSMGLDFPKNIGVIAVCP 237 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a-~~~vl-~eI~~~Lk~g~iL~~s-~G~--~----i~~~~~~~i~~~~di~VI~v~P 237 (434)
..+.+|++++||+|++++|... ...++ ++..+.||+|++|+.+ .|- . ...+.+..+ .....||+..+|
T Consensus 193 --~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i-~gA~lDv~~~eP 269 (320)
T 1gdh_A 193 --HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRL-AYAGFDVFAGEP 269 (320)
T ss_dssp --CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE-EEEEESCCTTTT
T ss_pred --cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCC-cEEEEeCCCCCC
Confidence 3478999999999999999765 34566 3577899999988855 442 1 112222111 112456666677
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 013877 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (434)
Q Consensus 238 n~pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e~a~ 278 (434)
.+.+ .+|. .-+.++++|.. .|.++.+...
T Consensus 270 -~~~~---~L~~--------~~nviltPH~~~~t~~~~~~~~ 299 (320)
T 1gdh_A 270 -NINE---GYYD--------LPNTFLFPHIGSAATQAREDMA 299 (320)
T ss_dssp -SCCT---TGGG--------CTTEEECSSCTTCBHHHHHHHH
T ss_pred -CCCC---hhhh--------CCCEEECCcCCcCcHHHHHHHH
Confidence 2222 2343 36888999974 4455544443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=113.94 Aligned_cols=152 Identities=20% Similarity=0.169 Sum_probs=102.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC--CC--------cCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--GT--------LGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~~--------~~~~~Ea~~~ADi 181 (434)
+||+|||+|+||.++|..|.++ |++|.+..|.. .+..++.|+.... +. +.+. +.++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence 6899999999999999999999 99988877753 3555667764311 10 1234 44689999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEE-EEeccch-hhhhhcccccCCCCccEEEec------cCCChhhHHHHHhhccc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE 253 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~-i~~~~~~~i~~~~di~VI~v~------Pn~pg~~vr~ly~~G~~ 253 (434)
||++||+.+..+++++|.|+++++++| ++..|+. ...+.+ .+|++ .|+..+ -.+|+... .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~-----~--- 140 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVH-----H--- 140 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEE-----E---
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEE-----E---
Confidence 999999999999999999999998865 5778985 444444 34433 455443 24455542 1
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 254 ~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.|.|... ++.....+.+..+...+++...|..
T Consensus 141 -~~~g~~~-ig~~~~~~~~~~~~l~~~l~~~g~~ 172 (312)
T 3hn2_A 141 -LGAGRII-LGEFLPRDTGRIEELAAMFRQAGVD 172 (312)
T ss_dssp -CEEEEEE-EEESSCCCSHHHHHHHHHHHHTTCC
T ss_pred -CCCCeEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 1234333 4433333345566667888887764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-10 Score=115.11 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=129.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCcccc-------CCCcCCH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------~~~~~~~ 172 (434)
++||+|||+|.||.++|.+|.++ |++|++.++. ....+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 48999999999999999999999 9998776654 333333322 121000 0002355
Q ss_pred HhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEEE-eccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHh
Q 013877 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~~-s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (434)
+++++||+||+++|.... .+++.++.++++++++|+. +.+..+..+.. ......+++..||-.|.+.
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 678899999999997653 5788899999999998764 34565555443 2233357899999776543
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH-HHHHHHHHHHHHcC
Q 013877 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTENG 328 (434)
Q Consensus 250 ~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~-aliea~~~~~v~~G 328 (434)
+-..-+..+...+.+..+.+..++..+|... +.. .+ ..-| +++-+. .++..++ .+++.|
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v---~~--~~gf-----i~Nrll~~~~~ea~-~l~~~G 239 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIG-VVV---GN--CYGF-----VGNRMLAPYYNQGF-FLLEEG 239 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEB---CC--STTT-----THHHHHHHHHHHHH-HHHHTT
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEE-EEE---CC--CccH-----HHHHHHHHHHHHHH-HHHHcC
Confidence 1223345566778899999999999999642 111 11 1112 223322 2332233 345669
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHhcHHHH
Q 013877 329 MNEDLAYKNTVECI---TGIISKIISTQGMLAV 358 (434)
Q Consensus 329 l~~e~A~~~~~e~l---~Gli~~li~e~G~~~m 358 (434)
+++++..... ..+ .| -..++-..|++..
T Consensus 240 ~~~~~id~~~-~~~g~p~G-p~~l~D~~GlD~~ 270 (463)
T 1zcj_A 240 SKPEDVDGVL-EEFGFKMG-PFRVSDLAGLDVG 270 (463)
T ss_dssp CCHHHHHHHH-HHHTCSSC-HHHHHHHHCHHHH
T ss_pred CCHHHHHHHH-HHcCCCCc-HHHHHHHcchHHH
Confidence 9998765533 211 13 2455556676443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=119.35 Aligned_cols=210 Identities=11% Similarity=0.059 Sum_probs=130.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCcccc-------C--CCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------~--~~~~ 170 (434)
|+||+|||+|.||.++|.+|.++ |++|++++++.+ ..+.+.+ .|.... + ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHH-HHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 58999999999999999999999 999887776533 2333221 232100 0 0123
Q ss_pred CHHhhhccCCEEEEeecchHH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~--~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
++ +++++||+||+++|+... .+++.++.++++++++|+ .++++.+..+.+ .....-+++..|+--|.+.
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~---- 456 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI---- 456 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence 45 678999999999998764 368889999999999875 567777665543 2222236888998666443
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchH--HHHHHHHHHHHH
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV--HGIVESLFRRFT 325 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~--~aliea~~~~~v 325 (434)
+-..-+..+...+.+..+.+..++..+|... +.. .+. .-| +++-+ +.+.|+ .. ++
T Consensus 457 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v---~d~--~Gf-----i~Nril~~~~~Ea-~~-l~ 513 (725)
T 2wtb_A 457 ----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTP-VVV---GNC--TGF-----AVNRMFFPYTQAA-MF-LV 513 (725)
T ss_dssp ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEE---ESS--TTT-----THHHHHHHHHHHH-HH-HH
T ss_pred ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCEE-EEE---CCC--ccH-----HHHHHHHHHHHHH-HH-HH
Confidence 1122344566678899999999999999642 111 110 111 22222 224444 33 44
Q ss_pred HcCCCHHHHHHHHHHHHH---HHHHHHHHHhcHHHHHH
Q 013877 326 ENGMNEDLAYKNTVECIT---GIISKIISTQGMLAVYN 360 (434)
Q Consensus 326 ~~Gl~~e~A~~~~~e~l~---Gli~~li~e~G~~~m~~ 360 (434)
+.|+++++..... ...- | --+++-..|++..+.
T Consensus 514 ~~G~~~e~id~~~-~~~g~p~G-p~~l~D~vGld~~~~ 549 (725)
T 2wtb_A 514 ECGADPYLIDRAI-SKFGMPMG-PFRLCDLVGFGVAIA 549 (725)
T ss_dssp HTTCCHHHHHHHH-HHHTCSSC-HHHHHHHHCHHHHHH
T ss_pred HCCCCHHHHHHHH-HHcCCCCC-HHHHHHHhchHHHHH
Confidence 5599998776644 2211 3 244555566644443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=111.94 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=91.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.+ +||+|||+|+||.++|..|.+. |++|++++|... +++++|+||++
T Consensus 15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~a 64 (209)
T 2raf_A 15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEEC
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEc
Confidence 55667 8999999999999999999998 999877765422 35679999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE-Eeccch---------------hhhhhcccccCCCCccEEE-eccCCChhhHHHHH
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG-LSHGFL---------------LGHLQSMGLDFPKNIGVIA-VCPKGMGPSVRRLY 248 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~-~s~G~~---------------i~~~~~~~i~~~~di~VI~-v~Pn~pg~~vr~ly 248 (434)
+|+....++++++.+.++ +++|+ .+.|+. ...+++ .+| +.+++. ++| ..++.....-
T Consensus 65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~-~~~p~~~~~~ 138 (209)
T 2raf_A 65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNT-TFAATLQSGQ 138 (209)
T ss_dssp SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTT-SCHHHHHHSE
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeec-ccHhhccccc
Confidence 999888999999988888 88776 456665 233333 334 467888 444 2233321111
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~ 286 (434)
.. |.+... +.+.. .+.++.+.+.+++..+|.
T Consensus 139 ~~-----g~~~~~-~~~~g-~~~~~~~~v~~ll~~~G~ 169 (209)
T 2raf_A 139 VN-----GKEPTT-VLVAG-NDDSAKQRFTRALADSPL 169 (209)
T ss_dssp ET-----TTEECE-EEEEE-SCHHHHHHHHHHTTTSSC
T ss_pred cC-----CCCCce-eEEcC-CCHHHHHHHHHHHHHcCC
Confidence 11 112223 22222 256888999999999986
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=117.09 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=94.4
Q ss_pred hhhccCCcccc----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC
Q 013877 92 YIVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (434)
Q Consensus 92 ~~~~~~~~~f~----~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~ 167 (434)
.-+|.|+|... .+ ..+.| +||||||+|+||.++|++|+.. |++|+++++...+ ..++..
T Consensus 150 ~~~~~g~W~~~~~~~~~-~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~~~~--- 212 (340)
T 4dgs_A 150 RLVREGRWAAGEQLPLG-HSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVDWIA--- 212 (340)
T ss_dssp HHHHTTCC------CCC-CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSCCEE---
T ss_pred HHHhcCCcccccCcCcc-ccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccCcee---
Confidence 35678888643 23 68999 9999999999999999999988 9998777665332 234442
Q ss_pred CcCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec-cchh------hhhhcccccCCCCccEEEeccC
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVCPK 238 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~-G~~i------~~~~~~~i~~~~di~VI~v~Pn 238 (434)
..+.+|++++||+|++++|.... ..++ +++.+.||+|++|+.++ |-.+ ..+++ +-.-....||..--|.
T Consensus 213 -~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDVf~~EP~ 290 (340)
T 4dgs_A 213 -HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKS-GTIAGAGLDVFVNEPA 290 (340)
T ss_dssp -CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------CCSSEEEESCCSSSSS
T ss_pred -cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCceEEEeCCcCCCCC
Confidence 46899999999999999996555 4566 46888999999988654 4221 11111 1111124566666664
Q ss_pred CChhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHH
Q 013877 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (434)
Q Consensus 239 ~pg~~vr~ly~~G~~~~G~Gv~aliav~q-dvsg~a~e~ 276 (434)
.+. .++.. -+.+++||- ..|.++.+.
T Consensus 291 ~~~----~L~~~--------~nvilTPHia~~t~e~~~~ 317 (340)
T 4dgs_A 291 IRS----EFHTT--------PNTVLMPHQGSATVETRMA 317 (340)
T ss_dssp CCS----HHHHS--------SSEEECSSCSSCCHHHHHH
T ss_pred Ccc----chhhC--------CCEEEcCcCCcCCHHHHHH
Confidence 332 23432 467788886 344454443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=107.94 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=99.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||+|||+|.||.+++++|.+. |++|++.+|+.+ ..+...+.|+.. .+..++++++|+||+++|+...
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNPK-RTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSHH-HHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999998 998887766533 333443446553 3788899999999999999776
Q ss_pred HHHHHHHHhcCCCCcEEE-Eeccchhhhh----------hcccccCCCCccEEEeccCCC-hhhHHHHHhhcccccCCCc
Q 013877 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHL----------QSMGLDFPKNIGVIAVCPKGM-GPSVRRLYVQGKEINGAGI 259 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~-~s~G~~i~~~----------~~~~i~~~~di~VI~v~Pn~p-g~~vr~ly~~G~~~~G~Gv 259 (434)
.++++ +.+.+ ++++|+ .+.|..+..+ .+ .+| +..|++.+ |.. +... ..|-. .|-
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~~~~~~----~~~~~---~g~ 162 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVISAWTL----QAGPR---DGN 162 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTBCHHHH----HTCSC---SSC
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccccHhHh----ccccc---CCc
Confidence 67765 66666 777665 5667654322 12 334 45788877 443 2221 11110 122
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 260 ~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.++... .+.++.+.+..++..+|..
T Consensus 163 ~~~~~~g--~~~~~~~~v~~ll~~~G~~ 188 (215)
T 2vns_A 163 RQVPICG--DQPEAKRAVSEMALAMGFM 188 (215)
T ss_dssp CEEEEEE--SCHHHHHHHHHHHHHTTCE
T ss_pred eeEEEec--CCHHHHHHHHHHHHHcCCc
Confidence 2222223 2678999999999999974
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=112.38 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=119.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ccccCCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (434)
+||+|||+|.||.++|..|.+. |++|++.++. .+..+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVS-STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999999 9998766554 333333333 22 222 457
Q ss_pred HHhhhccCCEEEEeecchH----------HHHHHHHHHhcCCC---CcEEEEeccchhhh--------hhcc-cccCCCC
Q 013877 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLGH--------LQSM-GLDFPKN 229 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a----------~~~vl~eI~~~Lk~---g~iL~~s~G~~i~~--------~~~~-~i~~~~d 229 (434)
.++++++||+||+|+|... ..+++++|.+++++ +++|++.+++.... +++. +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 8889999999999998655 67888899999999 88887665443211 1110 1111122
Q ss_pred ccEEEeccCC--ChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchh
Q 013877 230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (434)
Q Consensus 230 i~VI~v~Pn~--pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~t 307 (434)
.. +...|.. ||..+.+.+. .+.++ +..+ +.++.+.+..++..+|.. ++.+.... .+.-.+.+.+
T Consensus 150 ~~-v~~~Pe~~~~G~~~~~~~~---------~~~iv-~G~~-~~~~~~~~~~l~~~~~~~-v~~~~~~~-ae~~Kl~~N~ 215 (436)
T 1mv8_A 150 FG-VGTNPEFLRESTAIKDYDF---------PPMTV-IGEL-DKQTGDLLEEIYRELDAP-IIRKTVEV-AEMIKYTCNV 215 (436)
T ss_dssp BE-EEECCCCCCTTSHHHHHHS---------CSCEE-EEES-SHHHHHHHHHHHTTSSSC-EEEEEHHH-HHHHHHHHHH
T ss_pred EE-EEECcccccccccchhccC---------CCEEE-EEcC-CHHHHHHHHHHHhccCCC-EEcCCHHH-HHHHHHHHHH
Confidence 23 3456643 3444332222 11212 2222 578889999999999863 22232111 1111111111
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 308 ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 308 vL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
.+ ...-+++..+...+.+.|+++++...
T Consensus 216 ~~-a~~ia~~nE~~~l~~~~Gid~~~v~~ 243 (436)
T 1mv8_A 216 WH-AAKVTFANEIGNIAKAVGVDGREVMD 243 (436)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 11 11224677778888899999876655
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=116.96 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=107.5
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ ..+.+.|+. ..+
T Consensus 147 ~~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~ 212 (335)
T 2g76_A 147 SMKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ-----QLP 212 (335)
T ss_dssp HHHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE-----ECC
T ss_pred HHHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce-----eCC
Confidence 46778895432 2367999 9999999999999999999987 9998766665333 456677875 358
Q ss_pred HHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEeccch-------hhhhhcccccCCCCccEEEeccCCChh
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~G~~-------i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
.+|++++||+|++++|.... ..++ +++.+.||+|++|+.++--. ...+++..+ -...+||+..+|. +..
T Consensus 213 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i-~gA~lDV~~~EP~-~~~ 290 (335)
T 2g76_A 213 LEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC-AGAALDVFTEEPP-RDR 290 (335)
T ss_dssp HHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE-EEEEESCCSSSSC-SCC
T ss_pred HHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCc-cEEEEeecCCCCC-CCc
Confidence 89999999999999998764 4566 46889999999988665322 112222111 1124577878883 222
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e 275 (434)
.+|.. -+.++++|.. .|.++.+
T Consensus 291 ---~L~~~--------~nvilTPH~~~~t~e~~~ 313 (335)
T 2g76_A 291 ---ALVDH--------ENVISCPHLGASTKEAQS 313 (335)
T ss_dssp ---HHHHS--------TTEEECSSCTTCBHHHHH
T ss_pred ---hHHhC--------CCEEECCcCCCCCHHHHH
Confidence 34542 6788999873 4445444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=117.75 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=83.3
Q ss_pred hhccCCccccc-----------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC
Q 013877 93 IVRGGRDLFNL-----------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (434)
Q Consensus 93 ~~~~~~~~f~~-----------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (434)
-+|+|+|.... ....+.| ++|||||+|.||.++|+.|+.. |++|+++++. ...+.+.+.|
T Consensus 132 ~~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~--~~~~~~~~~g 202 (352)
T 3gg9_A 132 SLKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE--NSKERARADG 202 (352)
T ss_dssp HHHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH--HHHHHHHHTT
T ss_pred HHHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC--CCHHHHHhcC
Confidence 35667775421 2367899 9999999999999999999988 9998766654 2345666778
Q ss_pred ccccCCCcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEec
Q 013877 162 FTEENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 162 ~~~~~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+.. +.+.+|++++||+|++++|.... ..++. +.++.||+|++|+.++
T Consensus 203 ~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 251 (352)
T 3gg9_A 203 FAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTS 251 (352)
T ss_dssp CEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred ceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence 864 45899999999999999996654 34554 6789999999998765
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=113.35 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=122.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ccccCCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (434)
+||+|||+|.||.++|.+|.+. |++|+++++. ....+...+ .| +.. ..+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 6999999999999999999999 9998766654 333333332 11 221 457
Q ss_pred HHhhhccCCEEEEeecch----------HHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhcccccCC--CCccE
Q 013877 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFP--KNIGV 232 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~----------a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-------~~~~~~i~~~--~di~V 232 (434)
.++++++||+||+|+|.. ...+++++|.+++++|++|++.+++... .+.+...... .++ .
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~-~ 150 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDF-D 150 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE-E
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcce-e
Confidence 889999999999999977 6778999999999999998887765321 1111000111 222 3
Q ss_pred EEeccCCC--hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC--cccccchhhhcccccccchhh
Q 013877 233 IAVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGI 308 (434)
Q Consensus 233 I~v~Pn~p--g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~--~~iettf~~E~~~Dlfge~tv 308 (434)
+...|... |..+++... .+.++ +.. .+.++.+.+..++..++.. .++.+.. ...+.-.+.+.+.
T Consensus 151 v~~~Pe~a~eG~~~~~~~~---------p~~iv-vG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~~ 218 (450)
T 3gg2_A 151 IASNPEFLKEGNAIDDFMK---------PDRVV-VGV-DSDRARELITSLYKPMLLNNFRVLFMDI-ASAEMTKYAANAM 218 (450)
T ss_dssp EEECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTTCCSCCCEEEECH-HHHHHHHHHHHHH
T ss_pred EEechhhhcccchhhhccC---------CCEEE-EEc-CCHHHHHHHHHHHHHHhcCCCeEEecCH-HHHHHHHHHHHHH
Confidence 45667532 322221111 12222 222 1468899999999998852 1222211 1111222333322
Q ss_pred hhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 309 LLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 309 L~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+ ...-+++.-+...+.+.|+++++.+.
T Consensus 219 ~-a~~ia~~nE~~~l~~~~Gid~~~v~~ 245 (450)
T 3gg2_A 219 L-ATRISFMNDVANLCERVGADVSMVRL 245 (450)
T ss_dssp H-HHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2 22334666677788889999987766
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=115.29 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=79.5
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+|+|+|..... ..+.| +||||||+|+||.++|+.|+.. |++|+++++...+. + .+.. ..+.
T Consensus 106 ~~~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~-----~~~~----~~~l 167 (290)
T 3gvx_A 106 LMKAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ-N-----VDVI----SESP 167 (290)
T ss_dssp HHHTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT-T-----CSEE----CSSH
T ss_pred HhhhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc-c-----cccc----cCCh
Confidence 367788866543 67899 9999999999999999999988 99988776653321 1 1222 4589
Q ss_pred HhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+|++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 168 ~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 209 (290)
T 3gvx_A 168 ADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVA 209 (290)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECS
T ss_pred HHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEee
Confidence 9999999999999996544 4555 46889999999998765
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=117.41 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=84.0
Q ss_pred hhccCCccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 93 IVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 93 ~~~~~~~~f~~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
-+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++. ....+.+.+.|+.. +
T Consensus 144 ~~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~ 211 (351)
T 3jtm_A 144 QVVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRL-QMAPELEKETGAKF----V 211 (351)
T ss_dssp HHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSS-CCCHHHHHHHCCEE----C
T ss_pred HHHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCC-ccCHHHHHhCCCeE----c
Confidence 46778886431 2357899 9999999999999999999988 9998766654 33455666678764 4
Q ss_pred CCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.+.+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 212 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 256 (351)
T 3jtm_A 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256 (351)
T ss_dssp SCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred CCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence 5899999999999999996533 4555 46788899999998664
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=116.14 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=80.5
Q ss_pred hhhccCCcccc----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC
Q 013877 92 YIVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (434)
Q Consensus 92 ~~~~~~~~~f~----~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~ 167 (434)
.-+|.|+|... .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .+.+ .|...
T Consensus 151 ~~~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~~~~--~g~~~--- 217 (345)
T 4g2n_A 151 RMVRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRLS-HALE--EGAIY--- 217 (345)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCCC-HHHH--TTCEE---
T ss_pred HHHHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCcc-hhhh--cCCeE---
Confidence 34677888521 12367999 9999999999999999999987 9998776665322 2222 26653
Q ss_pred CcCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+.+.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 218 -~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 218 -HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp -CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred -eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 45899999999999999996544 4555 46788899999998664
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=116.97 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=82.0
Q ss_pred hhccCCcc-c--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 93 IVRGGRDL-F--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 93 ~~~~~~~~-f--~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
-+|.|+|. + ......+.| +||||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+. .
T Consensus 125 ~~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~-----~ 191 (330)
T 4e5n_A 125 FVRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLGLR-----Q 191 (330)
T ss_dssp HHHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHTEE-----E
T ss_pred HHHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcCce-----e
Confidence 45677774 1 112357899 9999999999999999999887 99987666543 234556667875 3
Q ss_pred CCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEec
Q 013877 170 GDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
.+.+|++++||+|++++|.... ..++. +.++.||+|++|+.++
T Consensus 192 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 236 (330)
T 4e5n_A 192 VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236 (330)
T ss_dssp CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 5899999999999999996544 45554 6889999999998664
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=114.45 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=79.3
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+|+|+|........+.| ++|||||+|+||.++|++|+.. |++|+++++... + .+... ..+.
T Consensus 107 ~~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~----~~~~~----~~~l 168 (303)
T 1qp8_A 107 KMKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---E----GPWRF----TNSL 168 (303)
T ss_dssp HHHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---C----SSSCC----BSCS
T ss_pred HHHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---c----cCccc----CCCH
Confidence 457788854322247899 9999999999999999999988 999876665432 1 13332 4578
Q ss_pred HhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEecc
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHG 213 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~G 213 (434)
++++++||+|++++|.... ..++. ++.+.||+|++|+.++-
T Consensus 169 ~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 169 EEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp HHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred HHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCC
Confidence 8999999999999998754 56664 68899999999987653
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-10 Score=115.24 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=74.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+. ..+.++++++||+|+++
T Consensus 146 ~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~l~~~l~~aDvVil~ 211 (334)
T 2dbq_A 146 YDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVERELNAE-----FKPLEDLLRESDFVVLA 211 (334)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHHCCE-----ECCHHHHHHHCSEEEEC
T ss_pred cCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhHhhcCcc-----cCCHHHHHhhCCEEEEC
Confidence 57889 9999999999999999999988 9998777665433 455566765 35788999999999999
Q ss_pred ecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+|+... ..++ +++.+.|++|++|+.++
T Consensus 212 vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 212 VPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp CCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred CCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 998774 4566 46788899999887553
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=116.39 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=81.2
Q ss_pred hhccCCccccc--------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 93 IVRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 93 ~~~~~~~~f~~--------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
-+|+|+|.... +...+.| ++|||||+|+||.++|++|+.. |++|+++++...+ ..+.+.|+..
T Consensus 143 ~~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~ 213 (347)
T 1mx3_A 143 ALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVERALGLQR 213 (347)
T ss_dssp HHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHHHHTCEE
T ss_pred HHHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhHhhcCCee
Confidence 45678884221 1247899 9999999999999999999988 9998877665433 2345567653
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+.+.+|++++||+|++++|+... ..++ ++..+.||+|++|+.++
T Consensus 214 ----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 259 (347)
T 1mx3_A 214 ----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTA 259 (347)
T ss_dssp ----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred ----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECC
Confidence 45789999999999999998644 4566 46788999999888654
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=114.46 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=100.8
Q ss_pred hhhccCCccc-c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC
Q 013877 92 YIVRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (434)
Q Consensus 92 ~~~~~~~~~f-~---~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~ 167 (434)
.-+|+|+|.. . .....+.| ++|||||+|+||.++|++|+.. |++|+++++...+.. +.
T Consensus 122 ~~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~~-------~~---- 183 (311)
T 2cuk_A 122 AYARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPLP-------YP---- 183 (311)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSS-------SC----
T ss_pred HHHHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCcccc-------cc----
Confidence 3467788842 1 12357899 9999999999999999999988 999877666543321 22
Q ss_pred CcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEeccchh-h--hhhccccc--C-CCCccEEEeccCC
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHGFLL-G--HLQSMGLD--F-PKNIGVIAVCPKG 239 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~G~~i-~--~~~~~~i~--~-~~di~VI~v~Pn~ 239 (434)
..+.+|++++||+|++++|+... ..++. +..+.||+|++|+.++--.+ . .+.+ .+. + ....||+..+|..
T Consensus 184 -~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~-aL~g~i~ga~lDv~~~eP~~ 261 (311)
T 2cuk_A 184 -FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE-ALRGHLFGAGLDVTDPEPLP 261 (311)
T ss_dssp -BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH-HHTTTSSEEEESSCSSSSCC
T ss_pred -cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHH-HHhCcCCEEEEeeCCCCCCC
Confidence 45788999999999999998754 56664 57788999999886643221 1 1111 011 1 1245677667743
Q ss_pred ChhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 013877 240 MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (434)
Q Consensus 240 pg~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e 275 (434)
+.+. +|. .-+.++++|.. .|.++.+
T Consensus 262 ~~~~---L~~--------~~nviltPh~~~~t~~~~~ 287 (311)
T 2cuk_A 262 PGHP---LYA--------LPNAVITPHIGSAGRTTRE 287 (311)
T ss_dssp TTSG---GGG--------CTTEEECCSCTTCBHHHHH
T ss_pred CCCh---hhh--------CCCEEECCcCCCCCHHHHH
Confidence 2222 333 36888999974 3444433
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=116.75 Aligned_cols=160 Identities=14% Similarity=0.001 Sum_probs=104.9
Q ss_pred hhhccCCccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC
Q 013877 92 YIVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (434)
Q Consensus 92 ~~~~~~~~~f~~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~ 168 (434)
..+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+..
T Consensus 170 ~~~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-~~~~~~~~~G~~~---- 237 (393)
T 2nac_A 170 EWARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNLTW---- 237 (393)
T ss_dssp HHHHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTCEE----
T ss_pred HHHHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCc-cchhhHhhcCcee----
Confidence 346788995321 1257899 9999999999999999999987 99987666543 2345566678763
Q ss_pred cCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec-cchh------hhhhcccccCCCCccEEEeccCC
Q 013877 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVCPKG 239 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~-G~~i------~~~~~~~i~~~~di~VI~v~Pn~ 239 (434)
..+.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++ |-.+ ..+++.. ......||+.-.|..
T Consensus 238 ~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~-i~gA~lDV~~~EP~~ 316 (393)
T 2nac_A 238 HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGR-LAGYAGDVWFPQPAP 316 (393)
T ss_dssp CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTS-EEEEEESCCSSSSCC
T ss_pred cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCC-eeEEEEEecCCCCCC
Confidence 35789999999999999996533 4666 46788999999888554 4211 1222211 111235666666743
Q ss_pred ChhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHH
Q 013877 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (434)
Q Consensus 240 pg~~vr~ly~~G~~~~G~Gv~aliav~q-dvsg~a~e 275 (434)
+.+. ++. --+.++++|. ..|.++.+
T Consensus 317 ~~~p---L~~--------~~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 317 KDHP---WRT--------MPYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp TTCG---GGT--------STTBCCCCSCTTCSHHHHH
T ss_pred CCCh---hHc--------CCCEEECCCCCcCcHHHHH
Confidence 3333 222 2466778886 34444443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=115.34 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=83.3
Q ss_pred hhhccCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCC
Q 013877 92 YIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENG 167 (434)
Q Consensus 92 ~~~~~~~~~f~---~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~ 167 (434)
.-+|+|+|.+. .....+.| ++|||||+|+||.++|+.|+.. |++ |+++++.. ...+.+.+.|+..
T Consensus 143 ~~~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~-~~~~~~~~~g~~~--- 211 (364)
T 2j6i_A 143 EQIINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQA-LPKDAEEKVGARR--- 211 (364)
T ss_dssp HHHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSC-CCHHHHHHTTEEE---
T ss_pred HHHHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCc-cchhHHHhcCcEe---
Confidence 34677888542 12357899 9999999999999999999987 996 87666543 2345566778763
Q ss_pred CcCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEec
Q 013877 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+.+.++++++||+|++++|.... ..++. +..+.||+|++|+.++
T Consensus 212 -~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~a 257 (364)
T 2j6i_A 212 -VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257 (364)
T ss_dssp -CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred -cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECC
Confidence 45789999999999999998744 35563 5778999999887553
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=114.61 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=103.6
Q ss_pred hhccCCcccc----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC
Q 013877 93 IVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (434)
Q Consensus 93 ~~~~~~~~f~----~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~ 168 (434)
-+|+|+|.+. .....+.| ++|||||+|.||.++|+.++.. |++|+++++.. ..+.+.+.|+.
T Consensus 155 ~~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~----- 220 (365)
T 4hy3_A 155 AFQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEENGVE----- 220 (365)
T ss_dssp HHHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHTTCE-----
T ss_pred HHHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhcCee-----
Confidence 4567774321 12367899 9999999999999999999877 99987666542 34556667876
Q ss_pred cCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhcccccCCCCccEEEeccCC
Q 013877 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~ 239 (434)
..+.+|++++||+|++++|.... ..++ .+.++.||+|++|+.++ |-. +..+++..+. ...||..--|--
T Consensus 221 ~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~--aaLDV~~~EPl~ 298 (365)
T 4hy3_A 221 PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV--AASDVYPEEPLP 298 (365)
T ss_dssp ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE--EEESCCSSSSCC
T ss_pred eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce--EEeeCCCCCCCC
Confidence 45899999999999999997654 4555 46888999999998665 321 2233332222 345555555532
Q ss_pred ChhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHH
Q 013877 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (434)
Q Consensus 240 pg~~vr~ly~~G~~~~G~Gv~aliav~q-dvsg~a~e~ 276 (434)
+.+. ++. --+.++++|- ..|.++.+.
T Consensus 299 ~~~p---L~~--------~~nvilTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 299 LDHP---VRS--------LKGFIRSAHRAGALDSAFKK 325 (365)
T ss_dssp TTCG---GGT--------CTTEEECCSCSSCCHHHHHH
T ss_pred CCCh---hhc--------CCCEEECCccccCHHHHHHH
Confidence 2222 222 1467788886 345555433
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=115.15 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=101.1
Q ss_pred hhhccCCccccc--cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 92 YIVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 92 ~~~~~~~~~f~~--~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
.-+|.|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. .|+.. .
T Consensus 144 ~~~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~~~----~ 206 (333)
T 3ba1_A 144 KYVRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNYTY----Y 206 (333)
T ss_dssp HHHHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCSEE----E
T ss_pred HHHHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCcee----c
Confidence 446778885421 1257899 9999999999999999999988 99987776653321 25543 4
Q ss_pred CCHHhhhccCCEEEEeecchH-HHHHH-HHHHhcCCCCcEEEEe-ccchh------hhhhcccccCCCCccEEEeccCCC
Q 013877 170 GDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLS-HGFLL------GHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a-~~~vl-~eI~~~Lk~g~iL~~s-~G~~i------~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
.+.++++++||+|++++|+.. ...++ +++.+.|++|++|+.+ .|..+ ..+.+..+ -....||+..+|..+
T Consensus 207 ~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i-~ga~lDv~~~EP~~~ 285 (333)
T 3ba1_A 207 GSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL-GGAGLDVFEREPEVP 285 (333)
T ss_dssp SCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSS-CEEEESCCTTTTCCC
T ss_pred CCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCC-eEEEEecCCCCCCCc
Confidence 678999999999999999864 45666 4577789999988755 44322 12222101 012356776667422
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e 275 (434)
.. ++. ..+.++++|.. .|.++.+
T Consensus 286 -~~---L~~--------~~nviltPH~~~~t~e~~~ 309 (333)
T 3ba1_A 286 -EK---LFG--------LENVVLLPHVGSGTVETRK 309 (333)
T ss_dssp -GG---GGG--------CTTEEECSSCTTCSHHHHH
T ss_pred -ch---hhc--------CCCEEECCcCCCCCHHHHH
Confidence 22 332 36778888863 3444443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=111.59 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=116.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-------------------CccccCCCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------------G~~~~~~~~~~ 171 (434)
++||+|||+|.||.++|.+|.+. |.|++|++.++. .+..+...+. ++.. ..+
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~ 79 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMN-TAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSD 79 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 37999999999999999999987 224687765544 3333333221 1111 346
Q ss_pred HHhhhccCCEEEEeecchH---------------HHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccc-CC--CCc
Q 013877 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLD-FP--KNI 230 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a---------------~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~-~~--~di 230 (434)
+.+++++||+||+|+|... ..++++.|.+++++|++|++.+.+... .+...... .+ .++
T Consensus 80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~ 159 (481)
T 2o3j_A 80 IPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENL 159 (481)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----C
T ss_pred HHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCC
Confidence 6788999999999987532 567888899999999998876554321 11110000 11 123
Q ss_pred c-EEEeccC--CChhhHHHHHhhcccccCCCceEEEeecCCC-CHHHHHHHHHHHHHhCC-Ccccccchhhhcccccccc
Q 013877 231 G-VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDV-DGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGE 305 (434)
Q Consensus 231 ~-VI~v~Pn--~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv-sg~a~e~a~~la~aiG~-~~~iettf~~E~~~Dlfge 305 (434)
+ .+..+|. .||..+..++... ..++....+. +.++.+.+..++..+|. ...+.+.. ...+.-.+-+
T Consensus 160 d~~v~~~Pe~~~~G~a~~~~~~~~--------~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~-~~ae~~Kl~~ 230 (481)
T 2o3j_A 160 KFQVLSNPEFLAEGTAMKDLANPD--------RVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNT-WSSELSKLVA 230 (481)
T ss_dssp CEEEEECCCCCCTTCHHHHHHSCS--------CEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEH-HHHHHHHHHH
T ss_pred ceEEEeCcccccccchhhcccCCC--------EEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCH-HHHHHHHHHH
Confidence 3 3567885 3444433332211 2222222211 12577888899999985 22222211 1111112222
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 306 RGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 306 ~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
.+. ....-+++.-+...+.+.|+++++...
T Consensus 231 N~~-~a~~ia~~nE~~~la~~~Gid~~~v~~ 260 (481)
T 2o3j_A 231 NAF-LAQRISSINSISAVCEATGAEISEVAH 260 (481)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 221 122234666677778888888887765
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-10 Score=111.89 Aligned_cols=107 Identities=19% Similarity=0.140 Sum_probs=81.1
Q ss_pred hhccCCccc-c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC
Q 013877 93 IVRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (434)
Q Consensus 93 ~~~~~~~~f-~---~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~ 168 (434)
-+|.|+|.. . .....+.| ++|||||+|.||.++|+.|+.. |++|+++++... ..+.+.+.|+..
T Consensus 134 ~~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~---- 201 (330)
T 2gcg_A 134 EVKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQP-RPEEAAEFQAEF---- 201 (330)
T ss_dssp HHHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSC-CHHHHHTTTCEE----
T ss_pred HHHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-chhHHHhcCcee----
Confidence 456788842 1 11257889 9999999999999999999988 999877776543 244455567653
Q ss_pred cCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.+.++++++||+|++++|+... ..++ +++.+.|++|++|+.++
T Consensus 202 -~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~s 246 (330)
T 2gcg_A 202 -VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246 (330)
T ss_dssp -CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred -CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 3888999999999999998754 4555 46778899999887554
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=114.09 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=79.5
Q ss_pred hhccCCccc-c--ccc----cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc
Q 013877 93 IVRGGRDLF-N--LLP----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (434)
Q Consensus 93 ~~~~~~~~f-~--~~~----~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (434)
-+|+|+|.. . ... ..+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+..
T Consensus 122 ~~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~- 191 (333)
T 2d0i_A 122 FIRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVEKELKARY- 191 (333)
T ss_dssp HHHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHHHHHTEEE-
T ss_pred HHHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCcee-
Confidence 456778842 0 111 57889 9999999999999999999988 9998776665433 4555667653
Q ss_pred CCCcCCHHhhhccCCEEEEeecch-HHHHHHH-HHHhcCCCCcEEEEec
Q 013877 166 NGTLGDIYETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~-a~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
.+.++++++||+|++++|.. ....++. ++.+.|++| +|+.++
T Consensus 192 ----~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 192 ----MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp ----CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred ----cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECC
Confidence 47889999999999999988 4455664 567889999 887553
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-10 Score=112.75 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=82.0
Q ss_pred hhhccCC---cccc-----ccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 013877 92 YIVRGGR---DLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (434)
Q Consensus 92 ~~~~~~~---~~f~-----~~~~~~~g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (434)
..+|.|+ |... .....+.| ++|||||+|.||.++|+.++ .. |++|+++++.. ...+.+.+.|+
T Consensus 137 ~~~~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~-~~~~~~~~~g~ 208 (348)
T 2w2k_A 137 RAARTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAP-ADAETEKALGA 208 (348)
T ss_dssp HHHTTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSC-CCHHHHHHHTC
T ss_pred HHHHcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCC-cchhhHhhcCc
Confidence 3467777 8311 12257899 99999999999999999999 77 99987666543 33444555677
Q ss_pred cccCCCcCCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEecc
Q 013877 163 TEENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 163 ~~~~~~~~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~G 213 (434)
.. +.+.++++++||+|++++|+... ..++ .++.+.|++|++|+.++.
T Consensus 209 ~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~sr 257 (348)
T 2w2k_A 209 ER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257 (348)
T ss_dssp EE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred EE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence 63 34788999999999999998754 4555 367788999998876543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=115.79 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=79.3
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. .++.. .....+.
T Consensus 123 ~~~~g~W~~~~~-~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~-~~~~~~l 187 (315)
T 3pp8_A 123 LKNQALWKPLPE-YTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVES-YVGREEL 187 (315)
T ss_dssp HHHTTCCCCCCC-CCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEE-EESHHHH
T ss_pred HHHhcccCCCCC-CCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhh-hcccCCH
Confidence 457788966543 78899 9999999999999999999988 99988777653321 22321 0002468
Q ss_pred HhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 188 ~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 229 (315)
T 3pp8_A 188 RAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA 229 (315)
T ss_dssp HHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECS
T ss_pred HHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECC
Confidence 8999999999999996544 4666 46889999999988664
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-10 Score=115.81 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=98.2
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+|+|+|........+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. +.+ ..... ..+.
T Consensus 120 ~~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~~~l 185 (324)
T 3evt_A 120 QRGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----FTAT 185 (324)
T ss_dssp HTTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----GGGC
T ss_pred HHhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----cCCH
Confidence 467788966543478999 9999999999999999999988 99988777653321 111 11111 3467
Q ss_pred HhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhcccccCCCCccEEEeccCCChhh
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
+|++++||+|++++|.... ..++ .+.+..||+|++|+.++ |-. +..+++.. ......||..--|.-+.+.
T Consensus 186 ~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~-i~gA~lDV~~~EPl~~~~p 264 (324)
T 3evt_A 186 ADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQ-LSMAALDVTEPEPLPTDHP 264 (324)
T ss_dssp HHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTS-CSEEEESSCSSSSCCTTCG
T ss_pred HHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCC-ceEEEeCCCCCCCCCCCCh
Confidence 8999999999999996544 4555 46788999999998665 321 12222211 1123456666666433322
Q ss_pred HHHHHhhcccccCCCceEEEeecC
Q 013877 244 VRRLYVQGKEINGAGINSSFAVHQ 267 (434)
Q Consensus 244 vr~ly~~G~~~~G~Gv~aliav~q 267 (434)
++.. -+.++++|-
T Consensus 265 ---L~~~--------~nvilTPHi 277 (324)
T 3evt_A 265 ---LWQR--------DDVLITPHI 277 (324)
T ss_dssp ---GGGC--------SSEEECCSC
T ss_pred ---hhcC--------CCEEEcCcc
Confidence 2222 467788886
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.3e-09 Score=109.53 Aligned_cols=199 Identities=13% Similarity=0.114 Sum_probs=120.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-------------------C-ccccCCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------G-FTEENGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------------G-~~~~~~~~~~ 171 (434)
-+|+|||+|.||.++|.+|.+. |++|+++++..++ .+...+. | +.. +.+
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~k-v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~----ttd 77 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARK-IELLHQNVMPIYEPGLDALVASNVKAGRLSF----TTD 77 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred eEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHhcCCCCccCCCHHHHHHhhcccCCEEE----ECC
Confidence 6899999999999999999999 9999877665443 3333221 1 222 467
Q ss_pred HHhhhccCCEEEEeecch-----------HHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhcccccCCCCccEE
Q 013877 172 IYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVI 233 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~-----------a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-------~~~~~~i~~~~di~VI 233 (434)
+.+++++||+||+|||.. ...++++.|.++|++|++|++.+++... .+.+. ....++. +
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d~~-v 154 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSGAK-V 154 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSCCE-E
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCCce-E
Confidence 889999999999997744 3678888999999999999888765422 11111 1112333 4
Q ss_pred EeccCCC--hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhcccccccchhhh
Q 013877 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGIL 309 (434)
Q Consensus 234 ~v~Pn~p--g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~--~iettf~~E~~~Dlfge~tvL 309 (434)
...|... |..+++.. . .+. +.+..+ +.++.+.+..++..++... ++..+-....+.-.+.+.+.+
T Consensus 155 ~~~Pe~a~eG~a~~d~~-~--------p~~-ivvG~~-~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~ 223 (446)
T 4a7p_A 155 VSNPEFLREGAAIEDFK-R--------PDR-VVVGTE-DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFL 223 (446)
T ss_dssp EECCCCCCTTSHHHHHH-S--------CSC-EEEECS-CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHH
T ss_pred EeCcccccccchhhhcc-C--------CCE-EEEeCC-cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 5667532 22211111 1 223 222321 4678888889998877531 111111112222223333322
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 310 LGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 310 ~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
..--+++.-+...+.+.|+++++.+.
T Consensus 224 -a~~ia~~nE~~~l~~~~GiD~~~v~~ 249 (446)
T 4a7p_A 224 -AVKITFINEIADLCEQVGADVQEVSR 249 (446)
T ss_dssp -HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 22334666677888899999987766
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-10 Score=116.77 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=97.7
Q ss_pred hhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 93 ~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
-+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..... ..+ .+... ..+.
T Consensus 124 ~~~~g~W~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~~----~~~l 188 (324)
T 3hg7_A 124 QQKQRLWQSHPY-QGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVYQ----LPAL 188 (324)
T ss_dssp HHHTTCCCCCCC-CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEEC----GGGH
T ss_pred HHhhCCCcCCCC-ccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hcccc----cCCH
Confidence 357789975544 68999 9999999999999999999988 99987776653221 111 11111 4578
Q ss_pred HhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEec-cch------hhhhhcccccCCCCccEEEeccCCChhh
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++.. .....+||.-.-|.-+.+.
T Consensus 189 ~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~-i~ga~lDV~~~EPl~~~~p 267 (324)
T 3hg7_A 189 NKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGK-LGMAVLDVFEQEPLPADSP 267 (324)
T ss_dssp HHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTS-SSEEEESCCSSSSCCTTCT
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCC-ceEEEeccCCCCCCCCCCh
Confidence 9999999999999996544 44554 5778899999998664 321 12222211 1123456666666433322
Q ss_pred HHHHHhhcccccCCCceEEEeecCC
Q 013877 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 244 vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
++. --+.++++|--
T Consensus 268 ---L~~--------~~nvilTPHia 281 (324)
T 3hg7_A 268 ---LWG--------QPNLIITPHNS 281 (324)
T ss_dssp ---TTT--------CTTEEECCSCS
T ss_pred ---hhc--------CCCEEEeCCCc
Confidence 121 14677888863
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=105.75 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=74.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC---------CcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~Ea~~~ADiV 182 (434)
+||+|||+|+||.++|..|.++ |++|.+..|. +..+...+.|+..... ...+.++ ++.+|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999999 9998877763 3456666677653100 0235555 5899999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEE-EEeccc
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGF 214 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~ 214 (434)
|++||+....+++++|.++++++++| ++..|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 99999998899999999999999865 467885
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=105.65 Aligned_cols=196 Identities=11% Similarity=0.069 Sum_probs=112.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc------------------CccccCCCcCCHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------------GFTEENGTLGDIY 173 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~------------------G~~~~~~~~~~~~ 173 (434)
+||+|||+|.||.++|..|. . |++|+++++. +...+...+. ++.. +.+++
T Consensus 37 mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~----ttd~~ 104 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIV-QAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA----TTDKH 104 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE----ESCHH
T ss_pred CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecC-HHHhhHHhccCCccccccHHHHHhhccCCeEE----EcCHH
Confidence 79999999999999999886 4 7888766554 3333333321 2332 46788
Q ss_pred hhhccCCEEEEeecch-----------HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCC--C
Q 013877 174 ETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG--M 240 (434)
Q Consensus 174 Ea~~~ADiViLavpd~-----------a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~--p 240 (434)
+++++||+||+++|.. .+.++++.|.+ +++|++|++.+.+.....++....+... .+..+|.. |
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~--~v~~sPe~~~~ 181 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID--NVIFSPEFLRE 181 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC--CEEECCCCCCT
T ss_pred HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc--cEeecCccCCc
Confidence 9999999999999976 45678888999 9999999887766433221101122221 33457743 3
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH--hCCC-cccccchhhhcccccccchhhhhchHHHHH
Q 013877 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (434)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~a--iG~~-~~iettf~~E~~~Dlfge~tvL~G~~~ali 317 (434)
+..+..... .+. |.+..+ .+..+.+..++.. ++.. .++.+.. .+-+.-.+-+.+.+ ..--+++
T Consensus 182 G~A~~~~l~---------p~r-IvvG~~--~~~~~~~~~ll~~~~~~~~~~v~~~~~-~~AE~~Kl~~N~~~-a~~Ia~~ 247 (432)
T 3pid_A 182 GRALYDNLH---------PSR-IVIGER--SARAERFADLLKEGAIKQDIPTLFTDS-TEAEAIKLFANTYL-ALRVAYF 247 (432)
T ss_dssp TSHHHHHHS---------CSC-EEESSC--SHHHHHHHHHHHHHCSSSSCCEEECCH-HHHHHHHHHHHHHH-HHHHHHH
T ss_pred chhhhcccC---------Cce-EEecCC--HHHHHHHHHHHHhhhccCCCeEEecCc-cHHHHHHHHHHHHH-HHHHHHH
Confidence 333221111 112 223332 3455666677665 4432 1222221 11111122233222 2233455
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 013877 318 ESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~ 336 (434)
.-+...+.+.|+++++.+.
T Consensus 248 nEl~~lae~~GiD~~~v~~ 266 (432)
T 3pid_A 248 NELDSYAESQGLNSKQIIE 266 (432)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 6667777888888877665
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-09 Score=108.89 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=115.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH---------------H----cCccccCCCcCC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---------------A----AGFTEENGTLGD 171 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~---------------~----~G~~~~~~~~~~ 171 (434)
|+||+|||+|.||.++|.+|.+. |.|++|+++++..+ ..+... + .++.. ..+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~~~-~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVNES-RINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSCHH-HHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECCHH-HHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999876 22478876655433 222211 1 23332 357
Q ss_pred HHhhhccCCEEEEeecchH---------------HHHHHHHHHhcCCCCcEEEEeccchhh-------hhhcccccCCCC
Q 013877 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKN 229 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a---------------~~~vl~eI~~~Lk~g~iL~~s~G~~i~-------~~~~~~i~~~~d 229 (434)
+++++++||+||+|+|... ..++.++|.+++++|++|++.+.+... .+++ .....
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~---~~~~~ 152 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA---NTKPN 152 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH---TCCTT
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH---hCCCC
Confidence 7889999999999998544 346777899999999988876543321 1211 10112
Q ss_pred cc-EEEeccCC--ChhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHHHHHHHHHh-CCCcccccchhhhccccccc
Q 013877 230 IG-VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFG 304 (434)
Q Consensus 230 i~-VI~v~Pn~--pg~~vr~ly~~G~~~~G~Gv~aliav~q-dvsg~a~e~a~~la~ai-G~~~~iettf~~E~~~Dlfg 304 (434)
++ .|...|.. ++..+.+++... ..++.-.+ ..+.+..+.+..++..+ |...++.+.. ...+.-.+.
T Consensus 153 ~d~~V~~~Pe~~~~G~~~~d~~~~~--------rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~ae~~Kl~ 223 (467)
T 2q3e_A 153 LNLQVLSNPEFLAEGTAIKDLKNPD--------RVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT-WSSELSKLA 223 (467)
T ss_dssp CEEEEEECCCCCCTTSHHHHHHSCS--------CEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECH-HHHHHHHHH
T ss_pred CCeEEEeCHHHhhcccchhhccCCC--------EEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCH-HHHHHHHHH
Confidence 33 34466643 444433333221 12222111 13567889999999988 5332222211 111111122
Q ss_pred chhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 305 ERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 305 e~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+.+.+ ...-+++.-+...+.+.|+++++...
T Consensus 224 ~N~~~-a~~ia~~nE~~~l~~~~Gid~~~v~~ 254 (467)
T 2q3e_A 224 ANAFL-AQRISSINSISALCEATGADVEEVAT 254 (467)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 22211 22234555566777888888876654
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.3e-09 Score=103.80 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=75.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC---------CcCCHHhhh
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETI 176 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~Ea~ 176 (434)
.++.. +||+|||.|+||.++|..|.++ |++|.++ ++ ++..+...+.|...... ...+. +.+
T Consensus 15 ~~~~~-~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 84 (318)
T 3hwr_A 15 LYFQG-MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAV 84 (318)
T ss_dssp ------CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGG
T ss_pred hhccC-CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHc
Confidence 45555 8999999999999999999999 9998877 54 44455555666542100 02344 346
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEE-EEeccchh
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~i 216 (434)
+.+|+||++||+....+++++|.++++++++| +...|+..
T Consensus 85 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 85 QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 89999999999999999999999999999865 57889875
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=104.44 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=74.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccC----------CCcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~----------~~~~~~~Ea~~~AD 180 (434)
+||+|||+|.||..+|..|.+. |++|.+.+|..+ ..+...+. |+...+ ....+.+++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQ-RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 6899999999999999999998 999877666533 34444443 331100 01357888899999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+||+++|+..+.++++++.++++++++|+...|.
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999999999999999999988777773
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=108.59 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=77.5
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. +.+ ++.. ..+
T Consensus 128 ~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~~----~~~ 192 (333)
T 1j4a_A 128 KVARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGYY----VDS 192 (333)
T ss_dssp HHHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTCB----CSC
T ss_pred HHHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCee----cCC
Confidence 45677774321 2357899 9999999999999999999988 99987776654332 222 3331 337
Q ss_pred HHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.+|++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 193 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~a 235 (333)
T 1j4a_A 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235 (333)
T ss_dssp HHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECC
Confidence 89999999999999997654 4555 35778899999887553
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-08 Score=106.21 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=117.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc-c-C--------------CCcCCHH
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-E-N--------------GTLGDIY 173 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~-~--------------~~~~~~~ 173 (434)
|-+||+|||+|.||.++|..|.+. |++|+++++. ++..+...+.+... + + ....+.+
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~-~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~ 79 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVD-QAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIE 79 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHH
Confidence 348999999999999999999999 9998766554 43344444322100 0 0 0134677
Q ss_pred hhhccCCEEEEeecc----------hHHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhcccccCC---CCccEE
Q 013877 174 ETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFP---KNIGVI 233 (434)
Q Consensus 174 Ea~~~ADiViLavpd----------~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-------~~~~~~i~~~---~di~VI 233 (434)
+++++||+||+|||. ....+++++|.++++++++|+..+++... .+.+. +..+ .++. +
T Consensus 80 ~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~-~~~g~~~~~~~-v 157 (478)
T 2y0c_A 80 AAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEE-LAKRGGDQMFS-V 157 (478)
T ss_dssp HHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHH-HHHTTCCCCEE-E
T ss_pred HHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHH-hcCCCCCccEE-E
Confidence 889999999999997 77788999999999999998877775331 11110 0001 2222 4
Q ss_pred EeccCC--ChhhHHHHHhhcccccCCCceEEEeecCCCCH----HHHHHHHHHHHHhCC--Ccccccchhhhcccccccc
Q 013877 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDG----RATNVALGWSVALGS--PFTFATTLEQEYRSDIFGE 305 (434)
Q Consensus 234 ~v~Pn~--pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg----~a~e~a~~la~aiG~--~~~iettf~~E~~~Dlfge 305 (434)
...|.. ||..+.+... .+.++ +..+ ++ +..+.+..++..++. ...+.+.. ...+.-.+.+
T Consensus 158 ~~~Pe~~~eG~~~~~~~~---------p~~iv-iG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di-~~ae~~Kl~~ 225 (478)
T 2y0c_A 158 VSNPEFLKEGAAVDDFTR---------PDRIV-IGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDV-RSAEFTKYAA 225 (478)
T ss_dssp EECCCCCCTTCHHHHHHS---------CSCEE-EECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECH-HHHHHHHHHH
T ss_pred EEChhhhcccceeeccCC---------CCEEE-EEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCH-HHHHHHHHHH
Confidence 556643 2332221111 22212 2332 23 677888888887653 11111111 1111112222
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCHHHHH
Q 013877 306 RGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (434)
Q Consensus 306 ~tvL~G~~~aliea~~~~~v~~Gl~~e~A~ 335 (434)
.+.+ ...-+++.-+...+.+.|+++++..
T Consensus 226 N~~~-a~~ia~~nE~~~la~~~Gid~~~v~ 254 (478)
T 2y0c_A 226 NAML-ATRISFMNELANLADRFGADIEAVR 254 (478)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2211 1222366667778888899887655
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=112.73 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=95.2
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG 170 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~ 170 (434)
-+|+|+|.... ....+.| |+|||||+|+||..+|+.++.. |++|+++++..... .| +.. +.
T Consensus 127 ~~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~------~~~~~~----~~ 189 (404)
T 1sc6_A 127 KAHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP------LGNATQ----VQ 189 (404)
T ss_dssp HHHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC------CTTCEE----CS
T ss_pred HHHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc------cCCcee----cC
Confidence 46778885432 2367999 9999999999999999999988 99987766643221 22 332 45
Q ss_pred CHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhcccccCCCCccEEEeccCCCh
Q 013877 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg 241 (434)
+.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++ |-. ...+++..+ -...+||+...|..+.
T Consensus 190 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i-~gA~lDVf~~EP~~~~ 268 (404)
T 1sc6_A 190 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL-AGAAIDVFPTEPATNS 268 (404)
T ss_dssp CHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE-EEEEEEC---------
T ss_pred CHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCc-cEEEEeecCCCCCCcc
Confidence 899999999999999998754 4566 45778899999988664 321 112222111 1124577777774322
Q ss_pred hhH-HHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 013877 242 PSV-RRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (434)
Q Consensus 242 ~~v-r~ly~~G~~~~G~Gv~aliav~qd-vsg~a~e 275 (434)
... ..++. --+.++++|-. .|.++.+
T Consensus 269 ~~~~~pL~~--------~~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 269 DPFTSPLAE--------FDNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp CTTTGGGTT--------CTTEEEECCCSCCSHHHHH
T ss_pred ccccchhhc--------CCCEEECCCCCCCcHHHHH
Confidence 100 01221 24788899874 3444443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-09 Score=104.79 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=77.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC---C--------CcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~--------~~~~~~Ea~~~AD 180 (434)
+||+|||+|+||.++|..|.++ |++|.+..|.. .+..++.|+...+ + .+.+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999999 99998877753 2555556653211 1 1245666666899
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEE-EEeccch-hhhhhc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQS 221 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~-i~~~~~ 221 (434)
+||++||..+..++++++.|+++++++| ++..|+. ...+.+
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~ 116 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA 116 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH
Confidence 9999999999999999999999988854 5788986 344443
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=110.23 Aligned_cols=101 Identities=20% Similarity=0.127 Sum_probs=75.6
Q ss_pred cCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH
Q 013877 96 GGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (434)
Q Consensus 96 ~~~~~f--~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~ 173 (434)
+|+|.+ ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ ..+.+.. ..+.+
T Consensus 132 ~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~~-----~~~l~ 195 (343)
T 2yq5_A 132 DHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFLT-----YTDFD 195 (343)
T ss_dssp HCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTCE-----ECCHH
T ss_pred cCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcccc-----ccCHH
Confidence 565433 223467899 9999999999999999999988 9998777665432 1122333 35899
Q ss_pred hhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 174 ETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 196 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 236 (343)
T 2yq5_A 196 TVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCA 236 (343)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred HHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECC
Confidence 999999999999996544 3455 35778899999998665
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-08 Score=98.45 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=113.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCccccC----------CCcC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN----------GTLG 170 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~----------~~~~ 170 (434)
.||+|||.|.||..+|..+..+ |++|++.+.. ++..+. ..+.|..... ..+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~ 79 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIE-PRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc
Confidence 7899999999999999999999 9999877654 222222 2223322100 0145
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+++|++++||+|+=++|-.... +++.+|-++++++++|. -++++.+..+.+ .....-+|+..||=-|.+.++
T Consensus 80 ~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~m~-- 154 (319)
T 3ado_A 80 NLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYYIP-- 154 (319)
T ss_dssp CHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTTCC--
T ss_pred chHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCccccc--
Confidence 7889999999999999965553 79999999999999884 778888877755 223334899999988888731
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.-- +..+...+.+.++.+.+++..+|..
T Consensus 155 -----------LVE-iv~g~~Ts~~~~~~~~~~~~~~gk~ 182 (319)
T 3ado_A 155 -----------LVE-LVPHPETSPATVDRTHALMRKIGQS 182 (319)
T ss_dssp -----------EEE-EEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred -----------hHH-hcCCCCCcHHHHHHHHHHHHHhCCc
Confidence 222 3457788889999999999999964
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=110.59 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=76.9
Q ss_pred hhccCCccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~-~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
-+|+|+|.... ....+.| ++|||||+|+||.++|+.++.. |++|+++++..... ..+... ..+
T Consensus 138 ~~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~~----~~s 201 (416)
T 3k5p_A 138 SAHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVKP----AAS 201 (416)
T ss_dssp HHHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBEE----CSS
T ss_pred hhhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcEe----cCC
Confidence 36778896543 2468999 9999999999999999999988 99987666542211 112322 568
Q ss_pred HHhhhccCCEEEEeecchHHH-HHH-HHHHhcCCCCcEEEEec
Q 013877 172 IYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~-~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.+|++++||+|++++|..... .++ ++.+..||+|++|+.++
T Consensus 202 l~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~a 244 (416)
T 3k5p_A 202 LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNA 244 (416)
T ss_dssp HHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECC
Confidence 999999999999999986654 455 36788899999998664
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-09 Score=107.73 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=78.2
Q ss_pred hhhccCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc
Q 013877 92 YIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (434)
Q Consensus 92 ~~~~~~~~~f--~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~ 169 (434)
.-+|+|+|.. ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+. + +.++. .
T Consensus 126 ~~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~ 189 (331)
T 1xdw_A 126 SRTAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYCT-----Q 189 (331)
T ss_dssp HHHTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTCE-----E
T ss_pred HHHHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhccc-----c
Confidence 3456788743 122357899 9999999999999999999988 99987776654332 1 12222 3
Q ss_pred CCHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.+.++++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 190 ~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECS
T ss_pred CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECC
Confidence 5889999999999999997643 3555 45778899999988664
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=107.84 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=77.8
Q ss_pred hhccCCccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC
Q 013877 93 IVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 93 ~~~~~~~~f--~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~ 170 (434)
-+|+|+|.. ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+. + +.++. ..
T Consensus 126 ~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~~ 189 (333)
T 1dxy_A 126 QLQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDFD-----YV 189 (333)
T ss_dssp HHHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTCE-----EC
T ss_pred HHHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhccc-----cC
Confidence 456777743 222367899 9999999999999999999988 99987776654332 1 12222 34
Q ss_pred CHHhhhccCCEEEEeecchHH-HHHH-HHHHhcCCCCcEEEEec
Q 013877 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~-~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+.+|++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 190 ~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~s 233 (333)
T 1dxy_A 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233 (333)
T ss_dssp CHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred CHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECC
Confidence 789999999999999997664 4556 45778899999888554
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.3e-08 Score=97.63 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=66.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-----------C---CCcCCHHhhhc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------N---GTLGDIYETIS 177 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------~---~~~~~~~Ea~~ 177 (434)
+||+|||+|.||.++|.+|.+ |++|++.++. .+..+...+.+.... . ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDIL-PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECC-HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999863 6787665554 333444444443100 0 01346778899
Q ss_pred cCCEEEEeecch-----------HHHHHHHHHHhcCCCCcEEEEec
Q 013877 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 178 ~ADiViLavpd~-----------a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
++|+||+++|+. ...++++.|.+ ++++++|++.+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~S 117 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKS 117 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECS
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeC
Confidence 999999999987 46788889999 99999888733
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=103.25 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=70.2
Q ss_pred CEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEe---cCCchhHHHH-HHcCccc----cCC-----------CcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGL---RKGSRSFAEA-RAAGFTE----ENG-----------TLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrd-s~~~~~~G~~Vivg~---r~~~~s~~~A-~~~G~~~----~~~-----------~~~~ 171 (434)
+||+|||+|+||.++|..|.+ + |++|.++. +. .+..+.+ .+.|... .++ ...+
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADE-AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKD 75 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTH-HHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESC
T ss_pred ceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCc-HHHHHHHHhhccceeeeecCCCccceeeccceEEeCC
Confidence 699999999999999999976 7 88888776 32 2334442 2333110 001 1346
Q ss_pred HHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++++++++|+||++||+....+++++|.++++++++|+..
T Consensus 76 ~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 76 PEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp HHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred HHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 7888999999999999999999999999999999887763
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=98.28 Aligned_cols=201 Identities=19% Similarity=0.170 Sum_probs=119.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCch---hHHHHHH---------------------cC-ccc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AG-FTE 164 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~---s~~~A~~---------------------~G-~~~ 164 (434)
++||+|||+|.||.++|.+|.+. .|+ +|+++++...+ ..+...+ .| +..
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ 92 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC 92 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence 48999999999999999999865 268 88777665441 2222211 12 111
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchH------------HHHHHHHHHhcCCCCcEEEEeccchhhhhh---------ccc
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGHLQ---------SMG 223 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a------------~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~---------~~~ 223 (434)
..+ .+++++||+||+|+|... +..+.+.|.+++++|++|++.+++.....+ ..+
T Consensus 93 ----ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g 167 (478)
T 3g79_A 93 ----TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESG 167 (478)
T ss_dssp ----ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHC
T ss_pred ----eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcC
Confidence 234 688999999999998653 345667899999999999888766432111 111
Q ss_pred ccCCCCccEEEeccC--CChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCcccccchhhhccc
Q 013877 224 LDFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRS 300 (434)
Q Consensus 224 i~~~~di~VI~v~Pn--~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~ai-G~~~~iettf~~E~~~ 300 (434)
.....++ .+.-.|. .+|..+..... .+.++ ... +.+..+.+..++..+ +...+.-+.. ..-+.
T Consensus 168 ~~~~~d~-~v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~aE~ 233 (478)
T 3g79_A 168 LKAGEDF-ALAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMSA-TAAEV 233 (478)
T ss_dssp CCBTTTB-EEEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEEH-HHHHH
T ss_pred CCcCCce-eEEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCCH-HHHHH
Confidence 1112233 3557784 34544322221 22323 233 457779999999999 6542222211 11111
Q ss_pred ccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 301 DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 301 Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
-.+-+++.+ ..--+++.-+...+.+.|+++++.+.
T Consensus 234 ~Kl~~N~~~-a~~Ia~~nE~~~l~e~~GiD~~~v~~ 268 (478)
T 3g79_A 234 TKTAENTFR-DLQIAAINQLALYCEAMGINVYDVRT 268 (478)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 122233222 22234666677888899999987766
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=96.90 Aligned_cols=101 Identities=23% Similarity=0.189 Sum_probs=74.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC-CC-----cCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GT-----LGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~-----~~~~~Ea~~~ADiViLa 185 (434)
+||+|||+|+||.++|..|. + |++|.+..|.. ...+..++.|+.... +. .....++++.+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQ-EQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCH-HHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 99988777653 334455556875411 00 00013467789999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccchhh-hhhc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQS 221 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~-~~~~ 221 (434)
||+.+..++++.+.+. .++++|++..|+... .+.+
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~ 110 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD 110 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH
Confidence 9999999999988875 566667788999864 4443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=87.57 Aligned_cols=114 Identities=7% Similarity=-0.043 Sum_probs=79.4
Q ss_pred ccCCCCEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.++- ++|+|||. |+||..++++|++. |++|+..+....+ -.|... ..++.|+.+..|++
T Consensus 11 l~~p-~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDlv 73 (138)
T 1y81_A 11 SKEF-RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVI 73 (138)
T ss_dssp ---C-CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEE
T ss_pred ccCC-CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCEE
Confidence 3444 89999999 99999999999998 9985444333211 157664 56888988899999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
++++|+..+.++++++.. ...+.++.++.++.-...+. .-..++.+ +.||+++-.
T Consensus 74 ii~vp~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~--igpnc~g~~ 128 (138)
T 1y81_A 74 VFVVPPKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEY--SFGRCIMVE 128 (138)
T ss_dssp EECSCHHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEE--ECSCCHHHH
T ss_pred EEEeCHHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEE--EcCCcceEE
Confidence 999999999999988766 45566777776664221111 11124454 569998866
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-07 Score=95.52 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=119.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh---------------h
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---------------I 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea---------------~ 176 (434)
.|+.|||+|.||.++|.+|.+. |++|+++++. ++..+... .|..+.. ....+|+ +
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~-~~kv~~L~-~g~~pi~--epgl~~ll~~~~~~g~l~~ttd~ 81 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDIN-QQTIDKLQ-NGQISIE--EPGLQEVYEEVLSSGKLKVSTTP 81 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHH-TTCCSSC--CTTHHHHHHHHHHTTCEEEESSC
T ss_pred CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHH-CCCCCcC--CCCHHHHHHhhcccCceEEeCch
Confidence 8999999999999999999999 9998766654 33333332 2321100 0011111 4
Q ss_pred ccCCEEEEeecchH------------HHHHHHHHHhcCCCCcEEEEeccchhhhh--------hcccccCCCCccEEEec
Q 013877 177 SGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGHL--------QSMGLDFPKNIGVIAVC 236 (434)
Q Consensus 177 ~~ADiViLavpd~a------------~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~--------~~~~i~~~~di~VI~v~ 236 (434)
++||+||+|||... +..+.+.|.++|++|++|++.+++..... ++.+.....++ .+.-.
T Consensus 82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~-~v~~~ 160 (431)
T 3ojo_A 82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDI-YLVHC 160 (431)
T ss_dssp CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTE-EEEEC
T ss_pred hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCe-EEEEC
Confidence 57999999999765 34566789999999999988877643211 11111122233 34567
Q ss_pred c--CCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHH
Q 013877 237 P--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH 314 (434)
Q Consensus 237 P--n~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~ 314 (434)
| -.+|..+..... .+.++ ... +.++.+.+..++..++...++.++. ..-+.-.+-+++.+ ..--
T Consensus 161 Pe~~~~G~A~~~~~~---------p~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~AE~~Kl~~N~~~-a~~I 226 (431)
T 3ojo_A 161 PERVLPGKILEELVH---------NNRII-GGV--TKACIEAGKRVYRTFVQGEMIETDA-RTAEMSKLMENTYR-DVNI 226 (431)
T ss_dssp CCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHTTTCCSCEEEEEH-HHHHHHHHHHHHHH-HHHH
T ss_pred CCcCCCcchhhcccC---------CCEEE-EeC--CHHHHHHHHHHHHHHhCCcEEeCCH-HHHHHHHHHHHHHH-HHHH
Confidence 7 334544322221 23433 343 5788999999999998643222321 11112222233322 2223
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 013877 315 GIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 315 aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+++.-+...+.+.|+++++.+.
T Consensus 227 a~~nE~~~l~e~~GiD~~~v~~ 248 (431)
T 3ojo_A 227 ALANELTKICNNLNINVLDVIE 248 (431)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHH
Confidence 4666677888899999887765
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-08 Score=104.54 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=69.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++.. .. ...|.. ..+.+|++++||+|+++
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~----~~-~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPR----QA-REPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH----HH-HSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCCh----hh-hccCcc-----cCCHHHHHHhCCEEEEe
Confidence 46788 9999999999999999999988 99987655421 11 123432 46899999999999999
Q ss_pred ecchHH-----HHHHH-HHHhcCCCCcEEEEec
Q 013877 186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~-----~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+|.... ..++. ++.+.||+|++|+.++
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~s 207 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNAS 207 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECS
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECC
Confidence 997764 35553 5788999999988554
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-08 Score=98.67 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++| ++|+|||+|.||.+++..|.+. |.+|.+.+|+.++..+.+.+.|+.. ..+..++++++|+||+++
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 4678 9999999999999999999998 8888887776544444444556543 337788899999999999
Q ss_pred cchHHHHHHHHH-HhcCCCCcEEEEecc
Q 013877 187 SDAAQADNYEKI-FSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~~~vl~eI-~~~Lk~g~iL~~s~G 213 (434)
|+....++...+ .+.+++|++|++...
T Consensus 195 p~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 988653211112 356788888876543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-08 Score=104.31 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=96.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++. ... ...+.. ..+.+|++++||+|+++
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~----~~~-~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPP----RAA-RGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHH----HHH-TTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCC----hHH-hccCcc-----cCCHHHHHhhCCEEEEc
Confidence 45788 9999999999999999999988 9998766542 111 112222 56899999999999999
Q ss_pred ecchHH-----HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcc
Q 013877 186 ISDAAQ-----ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (434)
Q Consensus 186 vpd~a~-----~~vl-~eI~~~Lk~g~iL~~s~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (434)
+|.... ..++ .+.+..||+|++|+.++ |-. +..+++.. ......||.---|.-+.+ ++.
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~-i~gA~LDV~e~EP~~~~~----L~~--- 249 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ-PLSVVLDVWEGEPDLNVA----LLE--- 249 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTC-CEEEEESCCTTTTSCCHH----HHH---
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC-CeEEEeeccccCCCCcch----hhh---
Confidence 996654 3445 35778899999998665 422 12222211 112345666666643222 332
Q ss_pred cccCCCceEEEeecC-CCCHHHHHH-----HHHHHHHhCCC
Q 013877 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGSP 287 (434)
Q Consensus 253 ~~~G~Gv~aliav~q-dvsg~a~e~-----a~~la~aiG~~ 287 (434)
.+.++++|- ..|.++.+. +..+..-++..
T Consensus 250 ------~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~ 284 (381)
T 3oet_A 250 ------AVDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284 (381)
T ss_dssp ------HSSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ------CCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 234678886 344454443 34555566653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=94.79 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=71.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--------EEEEEecCCc---hhHHHHH-Hc--------CccccC--CCc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEAR-AA--------GFTEEN--GTL 169 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--------~Vivg~r~~~---~s~~~A~-~~--------G~~~~~--~~~ 169 (434)
.||+|||.|+.|.|+|.-|.++ |+ +|.++.|..+ +...... .. |+.-.+ ...
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999987 53 4777766532 1111111 11 111100 014
Q ss_pred CCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
.|+++++++||+||+++|.+...++++++.++++++..| ..+.|+.
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE 155 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence 578999999999999999999999999999999998865 4667763
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-07 Score=77.29 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=65.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCCHH----hhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIY----ETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~----Ea~~~ADiViLav 186 (434)
++|+|||+|.+|..+++.|.+. |++|++.++...+ .+... ..|+....+...+.+ ..++++|+|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDI-CKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7899999999999999999998 9988777665333 33333 346521111122222 2267899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+......+..+.+.++++.+|..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9887665555666667777777655543
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.2e-08 Score=97.70 Aligned_cols=103 Identities=20% Similarity=0.134 Sum_probs=76.4
Q ss_pred hccCCccccc--cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 94 VRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 94 ~~~~~~~f~~--~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
++.|+|.... ....+.| ++|||||+|.+|..+|+.++.- |.+|+++++.. + +...+.++. ..+
T Consensus 123 ~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~-~--~~~~~~~~~-----~~~ 187 (334)
T 3kb6_A 123 VKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVK-R--EDLKEKGCV-----YTS 187 (334)
T ss_dssp HHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSC-C--HHHHHTTCE-----ECC
T ss_pred ccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCcc-c--hhhhhcCce-----ecC
Confidence 4555553222 2367899 9999999999999999999887 99987665442 2 233445665 468
Q ss_pred HHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s 211 (434)
.+|++++||+|++++|-... ..++. +.+..||+|++|+-+
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~ 229 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINT 229 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEEC
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEec
Confidence 99999999999999996554 35554 577889999988844
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=92.48 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=70.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.||.++|+.|+.. |.+|++.++...+ .+.+.+.|.... ...+.+++++++|+|+++
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESDL-LARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 35788 9999999999999999999988 9998877775332 344455675420 013677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+|+..+.+ +....|++|.+|++++
T Consensus 221 ~p~~~i~~---~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPALVVTA---NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSCCBCH---HHHHHSCTTCEEEECS
T ss_pred CChHHhCH---HHHHhcCCCCEEEEec
Confidence 99854422 3455789999888665
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-08 Score=85.26 Aligned_cols=116 Identities=10% Similarity=0.008 Sum_probs=78.9
Q ss_pred ccCCCCEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 107 AFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.|...++|+|||+ |+||..++++|++. |++|+..+.... +. -.|... ..++.|+.+..|+
T Consensus 9 ll~~p~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dl 73 (145)
T 2duw_A 9 ILTSTRTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDM 73 (145)
T ss_dssp HHHHCCCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSE
T ss_pred HHhCCCEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCE
Confidence 3442288999999 89999999999999 988654443320 11 147664 5578888889999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
+++++|+....++++++.. ...+.+|++...+.-...+. .-..++.+ +.||+++-.
T Consensus 74 vii~vp~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~Gi~~--igpnc~g~~ 129 (145)
T 2duw_A 74 VDVFRNSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAGLSV--VMDRCPAIE 129 (145)
T ss_dssp EECCSCSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTTCEE--ECSCCHHHH
T ss_pred EEEEeCHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcCCEE--EcCCeeeEE
Confidence 9999999999999988766 44555666655553211111 11234444 469998866
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=91.85 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=70.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.||.++|+.|+.. |.+|++.++...+ .+.+.+.|.... ...+.+++++++|+|+++
T Consensus 153 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 153 YTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSAH-LARITEMGLVPF--HTDELKEHVKDIDICINT 222 (300)
T ss_dssp SCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHTTCEEE--EGGGHHHHSTTCSEEEEC
T ss_pred CCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHCCCeEE--chhhHHHHhhCCCEEEEC
Confidence 56889 9999999999999999999988 9998887775332 333445565420 024678899999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+|+..+. ++....|++|.+|++++
T Consensus 223 ~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 223 IPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CChhhhC---HHHHHhCCCCCEEEEEe
Confidence 9985432 23557899999888664
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.6e-08 Score=94.28 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=67.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcC--ccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
++|+|||+|.||.+++++|.+. .|+ +|.+++|..++..+.+.+.+ +.. +.+.+|+++++|+|+++||.
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~atp~ 206 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITVTLA 206 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEECCCC
T ss_pred cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEEeCC
Confidence 8999999999999999999864 155 78878776555555555556 543 56889999999999999995
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
. ..++.. +.+++|++|++...+
T Consensus 207 ~--~~v~~~--~~l~~g~~vi~~g~~ 228 (312)
T 2i99_A 207 T--EPILFG--EWVKPGAHINAVGAS 228 (312)
T ss_dssp S--SCCBCG--GGSCTTCEEEECCCC
T ss_pred C--CcccCH--HHcCCCcEEEeCCCC
Confidence 2 233322 578899988776544
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-08 Score=85.45 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=67.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
+ ++|+|||+|.||.++++.|+.. |++|.+..|..++..+.+.+.|.... ...+..++++++|+||.++|..
T Consensus 21 ~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 G-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp C-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCCS
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCCC
Confidence 6 9999999999999999999887 88887777775555566777675421 1457889999999999999976
Q ss_pred HHHHHHHHHHhcCCCCcEEEEe
Q 013877 190 AQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.. ++. ...+++|.++++.
T Consensus 92 ~~--~~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 92 TP--IVE--ERSLMPGKLFIDL 109 (144)
T ss_dssp SC--SBC--GGGCCTTCEEEEC
T ss_pred Cc--Eee--HHHcCCCCEEEEc
Confidence 22 111 2567888877755
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=9.6e-08 Score=100.32 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=74.5
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc
Q 013877 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 99 ~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
|....+ ..+.| ++|+|||+|.||.++|+.|+.. |.+|++.++. ......+...|+. +.++++++++
T Consensus 247 w~r~~~-~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~-~~~~~~a~~~g~~-----~~~l~ell~~ 312 (479)
T 1v8b_A 247 LMRATD-FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDK 312 (479)
T ss_dssp HHHHHC-CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTT
T ss_pred hhhccc-cccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCC-hhhHHHHHHcCCE-----ecCHHHHHhc
Confidence 643222 46889 9999999999999999999988 9998776654 3323345667876 4689999999
Q ss_pred CCEEEEeecchHHHHHH-HHHHhcCCCCcEEEEeccc
Q 013877 179 SDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 179 ADiViLavpd~a~~~vl-~eI~~~Lk~g~iL~~s~G~ 214 (434)
||+|++++.. ..++ .+.++.||+|++|+.++-+
T Consensus 313 aDiVi~~~~t---~~lI~~~~l~~MK~gailiNvgrg 346 (479)
T 1v8b_A 313 GDFFITCTGN---VDVIKLEHLLKMKNNAVVGNIGHF 346 (479)
T ss_dssp CSEEEECCSS---SSSBCHHHHTTCCTTCEEEECSST
T ss_pred CCEEEECCCh---hhhcCHHHHhhcCCCcEEEEeCCC
Confidence 9999999733 2333 3567889999999866543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=93.74 Aligned_cols=212 Identities=13% Similarity=0.142 Sum_probs=136.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccccC------CCcCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------GTLGD 171 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~------~~~~~ 171 (434)
+.++||+|||.|.||..+|..+..+ |++|++.+.. .+..+.+.+ .+..... -+..+
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred ccccEEEEEcccHHHHHHHHHHHhC------CCchhcccch-HhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence 4468999999999999999999999 9999876654 322222221 1100000 00122
Q ss_pred HHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
..+.+++||+||=+++-.... +++.++.+++++++||. -++++.+..+.+ .....-+|+..|+=-|.+.++
T Consensus 387 ~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m~--- 460 (742)
T 3zwc_A 387 STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVMR--- 460 (742)
T ss_dssp CGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTCC---
T ss_pred cHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCCc---
Confidence 335678999999999965553 79999999999999884 678888877755 222334799999988877731
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccchhhhhchHHH--HHHHHHHHHHH
Q 013877 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRRFTE 326 (434)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~tvL~G~~~a--liea~~~~~v~ 326 (434)
.-- |..+...+.+.++.+.++...+|...++ . .+ ..+-+.+-+.. +.|++ .+++
T Consensus 461 ----------LVE-vi~g~~Ts~e~~~~~~~~~~~lgK~pV~-v---kd-------~pGFi~NRi~~~~~~ea~--~l~~ 516 (742)
T 3zwc_A 461 ----------LLE-VIPSRYSSPTTIATVMSLSKKIGKIGVV-V---GN-------CYGFVGNRMLAPYYNQGF--FLLE 516 (742)
T ss_dssp ----------EEE-EEECSSCCHHHHHHHHHHHHHTTCEEEE-C---CC-------STTTTHHHHHHHHHHHHH--HHHH
T ss_pred ----------eEE-EecCCCCCHHHHHHHHHHHHHhCCCCcc-c---CC-------CCCccHHHHhhHHHHHHH--HHHH
Confidence 222 3457788899999999999999975221 1 11 11223333332 33433 3667
Q ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 013877 327 NGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (434)
Q Consensus 327 ~Gl~~e~A~~~~~e~l---~Gli~~li~e~G~~~m~ 359 (434)
.|.++++--.. +..+ .| --.|+-.-|++-++
T Consensus 517 eG~~~~~id~a-~~~~G~pmG-Pf~l~D~vGlDv~~ 550 (742)
T 3zwc_A 517 EGSKPEDVDGV-LEEFGFKMG-PFRVSDLAGLDVGW 550 (742)
T ss_dssp TTCCHHHHHHH-HHHHTCSSC-HHHHHHHHCHHHHH
T ss_pred cCCCHHHHHHH-HHHcCCCCC-hHHHHHHhCHHHHH
Confidence 79888775542 2222 14 34556666775443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=8e-09 Score=100.52 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=71.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
+||+|||+|+||.++|..|.++ |++|.+..|.... .+.....|..+ .....+..+.+ +.+|+||++||+.+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPA-QDIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCC-EEEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeec-cceecCchHhcCCCCCEEEEeCCccC
Confidence 7899999999999999999999 8888887776332 11112233211 00012344554 78999999999999
Q ss_pred HHHHHHHHHhcCCCCcE-EEEeccchh
Q 013877 191 QADNYEKIFSCMKPNSI-LGLSHGFLL 216 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~i-L~~s~G~~i 216 (434)
..++++++.++++++++ |++..|+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 99999999999988875 467788865
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=100.52 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=74.0
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc
Q 013877 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 99 ~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
|....+ ..+.| ++|+|||+|.||.++|+.|+.. |.+|++.++.. .....+...|+. ..+++|++++
T Consensus 267 w~~~~g-~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~-~~~~~a~~~G~~-----~~~l~ell~~ 332 (494)
T 3d64_A 267 IKRATD-VMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDP-ICALQAAMEGYR-----VVTMEYAADK 332 (494)
T ss_dssp HHHHHC-CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCH-HHHHHHHTTTCE-----ECCHHHHTTT
T ss_pred hhhccc-cccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCh-HhHHHHHHcCCE-----eCCHHHHHhc
Confidence 643222 46889 9999999999999999999987 99987766543 223345556776 4689999999
Q ss_pred CCEEEEeecchHHHHHH-HHHHhcCCCCcEEEEeccc
Q 013877 179 SDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 179 ADiViLavpd~a~~~vl-~eI~~~Lk~g~iL~~s~G~ 214 (434)
||+|++++.. ..++ .+.++.||+|++|+.++-+
T Consensus 333 aDiVi~~~~t---~~lI~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 333 ADIFVTATGN---YHVINHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp CSEEEECSSS---SCSBCHHHHHHCCTTEEEEECSSS
T ss_pred CCEEEECCCc---ccccCHHHHhhCCCCcEEEEcCCC
Confidence 9999999842 2333 3567789999999866443
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-07 Score=96.09 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. ......+...|+. ..+++|++++||+|+++
T Consensus 207 ~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~-p~~a~~A~~~G~~-----~~sL~eal~~ADVVilt 273 (436)
T 3h9u_A 207 VMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVD-PINALQAAMEGYQ-----VLLVEDVVEEAHIFVTT 273 (436)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred CcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-hhhhHHHHHhCCe-----ecCHHHHHhhCCEEEEC
Confidence 46788 9999999999999999999988 9998766554 4344556678886 46899999999999986
Q ss_pred ecchHHHHHHH-HHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
...... +. +....||+|++|+.++
T Consensus 274 ~gt~~i---I~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 274 TGNDDI---ITSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp SSCSCS---BCTTTGGGCCTTEEEEECS
T ss_pred CCCcCc---cCHHHHhhcCCCcEEEEeC
Confidence 654332 32 5677899999988554
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=90.65 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=67.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++| +|+|||+|.||.+++++|.+. |.+|.+.+|+.++..+.+.+.|.. ..+.+++ +++|+|++++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 3556 899999999999999999988 888888877655545555555653 3467778 9999999999
Q ss_pred cchHHH---HHHHHHHhcCCCCcEEEEe
Q 013877 187 SDAAQA---DNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 187 pd~a~~---~vl~eI~~~Lk~g~iL~~s 211 (434)
|+..+. .++. .+.+++|++|++.
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~ 205 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDL 205 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEES
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEe
Confidence 998653 2221 4568888887754
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-05 Score=79.57 Aligned_cols=172 Identities=16% Similarity=0.211 Sum_probs=124.4
Q ss_pred cCccccCCCcCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccch---hh-hhhcccccCCCCccEEE
Q 013877 160 AGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVIA 234 (434)
Q Consensus 160 ~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~---i~-~~~~~~i~~~~di~VI~ 234 (434)
.|+.+ +.|-.|+++++|++|+-+|-.. +.+++++|.+++++|++|+.+.-++ +. .++. +. ++|+.|..
T Consensus 127 aGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIsS 199 (358)
T 2b0j_A 127 VGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNITS 199 (358)
T ss_dssp GTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEEE
T ss_pred cCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCeec
Confidence 67776 6788899999999999999766 7899999999999999998776543 22 2222 23 78999999
Q ss_pred eccCC-ChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhcccccccchhhhhch
Q 013877 235 VCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (434)
Q Consensus 235 v~Pn~-pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~-~~iettf~~E~~~Dlfge~tvL~G~ 312 (434)
.||-+ |++ .| -.. +. ..-+|.++.+...+|+...|.. +.+. .|+.+..+-.+-.
T Consensus 200 ~HPaaVPgt-------~G-------q~~-~g-~~yAtEEqIeklveLaksa~k~ay~vP--------Adl~SpV~DMgs~ 255 (358)
T 2b0j_A 200 YHPGCVPEM-------KG-------QVY-IA-EGYASEEAVNKLYEIGKIARGKAFKMP--------ANLIGPVCDMCSA 255 (358)
T ss_dssp CBCSSCTTT-------CC-------CEE-EE-ESSSCHHHHHHHHHHHHHHHSCEEEEE--------HHHHHHHHSTTHH
T ss_pred cCCCCCCCC-------CC-------ccc-cc-cccCCHHHHHHHHHHHHHhCCCeEecc--------hhhccchhhhHHH
Confidence 99933 333 22 222 32 5568999999999999999975 1221 2344333333333
Q ss_pred HHH----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 013877 313 VHG----IVESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (434)
Q Consensus 313 ~~a----liea~~~~~v-~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vs 363 (434)
+.+ .+..-++... -.|-|.+++-+.+.++|.. ++.|+...|+..|.+.+.
T Consensus 256 vTAv~~AGiL~Y~~~vtkIlgAP~~mie~q~~esL~t-iasLve~~GI~gm~k~Ln 310 (358)
T 2b0j_A 256 VTATVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMKEKGIANMEEALD 310 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHHHHHHCGGGHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcC
Confidence 333 2233344443 4599999999999999985 999999999999988876
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=86.14 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCchhHHHHHHcC---------ccccCCCcCCHHhhhccC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G--~~Vivg~r~~~~s~~~A~~~G---------~~~~~~~~~~~~Ea~~~A 179 (434)
|+||+|||.|+||.++|..|..+ | .+|++.++..++....+.+.+ ... ...+. +++++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 47999999999999999999988 8 578777665433333332211 111 02455 788999
Q ss_pred CEEEEeecchHH--------------------HHHHHHHHhcCCCCcE-EEEeccchh
Q 013877 180 DLVLLLISDAAQ--------------------ADNYEKIFSCMKPNSI-LGLSHGFLL 216 (434)
Q Consensus 180 DiViLavpd~a~--------------------~~vl~eI~~~Lk~g~i-L~~s~G~~i 216 (434)
|+||+++|+... .++++++.++. ++.+ |.++-+..+
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 999999997653 46666777765 4554 445555543
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=91.20 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=72.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+. +.....+...|+. +.+++|++++||+|+++
T Consensus 243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~d-p~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a 309 (464)
T 3n58_A 243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVD-PICALQAAMDGFE-----VVTLDDAASTADIVVTT 309 (464)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-cchhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence 46888 9999999999999999999988 9998876554 3334456667886 46899999999999998
Q ss_pred ecchHHHHHH-HHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl-~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+... .++ .+.+..||+|++|+.++-+.
T Consensus 310 tgt~---~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 310 TGNK---DVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CSSS---SSBCHHHHHHSCTTEEEEECSSST
T ss_pred CCCc---cccCHHHHhcCCCCeEEEEcCCCC
Confidence 7532 234 35677899999998665443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=82.73 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=58.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~ 189 (434)
+||||||+|.||..++++|.+. |++++ ++++. .+. .+ . +.+++|++ .++|+|++++|+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~-~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~ 61 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVR-GEH----EK---M-----VRGIDEFLQREMDVAVEAASQQ 61 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSS-CCC----TT---E-----ESSHHHHTTSCCSEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecC-cch----hh---h-----cCCHHHHhcCCCCEEEECCCHH
Confidence 4899999999999999999977 88874 44443 321 11 2 46888888 6999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEe
Q 013877 190 AQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.+.+++... ++.|+.+++.
T Consensus 62 ~~~~~~~~~---l~~G~~vv~~ 80 (236)
T 2dc1_A 62 AVKDYAEKI---LKAGIDLIVL 80 (236)
T ss_dssp HHHHHHHHH---HHTTCEEEES
T ss_pred HHHHHHHHH---HHCCCcEEEE
Confidence 888777543 4567766544
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=87.24 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=85.7
Q ss_pred cCCCCEEEEE-cc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEE
Q 013877 108 FNGINQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgII-G~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiVi 183 (434)
|.- ++|+|| |+ |++|..++++|++. |+++++..++.... .+-.|+.. ..+++|+.+ ..|+++
T Consensus 11 ~~~-~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~av 76 (305)
T 2fp4_A 11 VDK-NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASV 76 (305)
T ss_dssp CCT-TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEE
T ss_pred hCC-CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEE
Confidence 344 889999 99 99999999999999 99865555543211 01257764 567999888 899999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCc-cEEEeccCCChhhHH
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI-GVIAVCPKGMGPSVR 245 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di-~VI~v~Pn~pg~~vr 245 (434)
+++|+..+.++++++... .-..+|.+++|+..+...+ ........ .+..+.||+||...+
T Consensus 77 I~vP~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~-l~~~a~~~~gi~liGPnc~Gii~p 137 (305)
T 2fp4_A 77 IYVPPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVR-VKHRLLRQGKTRLIGPNCPGVINP 137 (305)
T ss_dssp ECCCHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHTTCSSCEEECSSSCEEEET
T ss_pred EecCHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHH-HHHHHHhcCCcEEEeCCCCeEecc
Confidence 999999999999885542 2244688999997543111 11222333 455688999887753
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.3e-07 Score=90.77 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=70.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC---------CC----------
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT---------- 168 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---------~~---------- 168 (434)
+.+ .||+|||+|.+|...++.++.. |.+|++.+++.. ..+.+.+.|....+ +.
T Consensus 182 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 182 VKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVRPE-VAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp ECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSSGG-GHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred cCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence 466 8999999999999999999988 999877766544 45666666654210 00
Q ss_pred --cCCHHhhhccCCEEEEee--cchHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 169 --LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 169 --~~~~~Ea~~~ADiViLav--pd~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
..+++++++++|+||.++ |......++ ++....||||.+|++.+
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 124568999999999886 432233333 56778899999999885
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=92.41 Aligned_cols=91 Identities=23% Similarity=0.269 Sum_probs=70.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. +.....|...|+. +.+++|+++++|+|++|
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d-p~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID-PICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC-hhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 46788 9999999999999999999988 9998776654 3334456677876 46899999999999997
Q ss_pred ecchHHHHHHH-HHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
+- ...++. +.+..||+|.+|+.++
T Consensus 283 tg---t~~lI~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 283 TG---NKNVVTREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp SS---CSCSBCHHHHHHSCTTEEEEECS
T ss_pred CC---CcccCCHHHHHhcCCCcEEEEec
Confidence 32 123443 5667899999888554
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-06 Score=90.77 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=72.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.+.| ++|+|||+|.||..+|+.++.. |.+|++.++. ....+.|.+.|+. +.+.+++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~~-~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEID-PINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 5678 9999999999999999999988 9887765544 4445677788886 357888999999999999
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~g~iL~~s~G~ 214 (434)
+.... +. +..+.|++|.+|+.++-+
T Consensus 338 gt~~~---i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 338 GNKDI---IMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp SSSCS---BCHHHHHHSCTTCEEEECSSS
T ss_pred CCHHH---HHHHHHHhcCCCcEEEEeCCC
Confidence 86542 33 566779999988866543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=85.49 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=79.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||+|||+ |.||..++++|++. |++++...++.... ....|+.. ..+++|+.+ ..|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g---~~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGG---TTHLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCccc---ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999999 99999999999998 88865455442110 01356654 568899888 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
..+.+++.+.... ....+|.++.|+..+..++ ....-+...+..+.||++|-.
T Consensus 75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~~~~~~-l~~~A~~~gv~liGPNc~Gi~ 127 (288)
T 2nu8_A 75 PFCKDSILEAIDA-GIKLIITITEGIPTLDMLT-VKVKLDEAGVRMIGPNTPGVI 127 (288)
T ss_dssp GGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSCCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEecCCccee
Confidence 9999999876543 1223566889997543111 111112223444678887655
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-06 Score=85.31 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=81.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
+||+|+|+ |+||..+++++++. |++++....+.... ....|+.. ..+++|+.+ ..|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGG---MEVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCC---ceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 98865555543210 01256664 567899888 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhH
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
..+.+++++.... .-..+|++++||.....++ .....+...+..+.||++|-..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~a~~~gi~vigPNc~Gii~ 128 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPTLDMVR-AVEEIKALGSRLIGGNCPGIIS 128 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEeCCCCeEEc
Confidence 9999999886543 2233677899997532111 1111122344456688887653
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.4e-07 Score=89.43 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=67.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++|+|||+|.||.+++++|.... ...+|.+++|..++..+.+.+. |+.. ..+.+.+++++++|+|++|||
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi~aTp 203 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHL----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVTA 203 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECCC
T ss_pred CeEEEECCcHHHHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEEEecc
Confidence 89999999999999999986530 0237888887766555555553 5321 014688999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
......++. .+.+++|+.|.....+.
T Consensus 204 s~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 204 DKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp CSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred CCCCCceec--HHHcCCCCEEEECCCCC
Confidence 864222332 25688999887665543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-06 Score=83.43 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=64.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
.||||||+|.||.. ++.+|++. .+++++ +.++..++..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888764 156665 44444444455666678763 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEE
Q 013877 190 AQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+.++..... +.|+-|.
T Consensus 78 ~h~~~~~~al---~~gk~vl 94 (308)
T 3uuw_A 78 THYEIIKILL---NLGVHVY 94 (308)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHH---HCCCcEE
Confidence 9988876543 3455443
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-06 Score=83.76 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=60.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|+||..++.+|++. .+++++. .++..++..+.+.+.|... ..+.+++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 1566653 3443334445566667553 678999998 89999999999
Q ss_pred hHHHHHHHHHHh
Q 013877 189 AAQADNYEKIFS 200 (434)
Q Consensus 189 ~a~~~vl~eI~~ 200 (434)
..+.++......
T Consensus 76 ~~h~~~~~~al~ 87 (344)
T 3euw_A 76 STHVDLITRAVE 87 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999988766443
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-06 Score=82.38 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=60.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999885 1566653 3444445555666777631 1578999987 79999999999
Q ss_pred hHHHHHHHHHH
Q 013877 189 AAQADNYEKIF 199 (434)
Q Consensus 189 ~a~~~vl~eI~ 199 (434)
..+.++.....
T Consensus 78 ~~h~~~~~~al 88 (330)
T 3e9m_A 78 QGHYSAAKLAL 88 (330)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-06 Score=82.44 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 1566653 444434444556666764 468999988 79999999999
Q ss_pred hHHHHHHHHHH
Q 013877 189 AAQADNYEKIF 199 (434)
Q Consensus 189 ~a~~~vl~eI~ 199 (434)
..+.++.....
T Consensus 74 ~~h~~~~~~al 84 (331)
T 4hkt_A 74 DTHADLIERFA 84 (331)
T ss_dssp GGHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 99988776543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.8e-06 Score=83.29 Aligned_cols=87 Identities=9% Similarity=0.060 Sum_probs=63.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++.+|++.. .+++++. .++..++..+.+.+.|+.. ..+.+|+++ +.|+|++|+|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~----~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHA----DRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTT----TTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhCC----CCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 68999999999999999998740 1566553 4444344445566678754 678999987 79999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++..... +.|+-|.
T Consensus 86 ~~h~~~~~~al---~~gk~v~ 103 (354)
T 3q2i_A 86 GLHPTQSIECS---EAGFHVM 103 (354)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCCEE
Confidence 99988776543 3455443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-06 Score=72.32 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCC---HHhh-hcc
Q 013877 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-ISG 178 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~Ea-~~~ 178 (434)
.++...+ ++|.|||+|.+|..+++.|++. |++|++..+...+ .+.+. ..|.....+...+ ..++ +++
T Consensus 13 ~~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~~-~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 13 MSKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEYA-FHRLNSEFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp ----CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGGG-GGGSCTTCCSEEEESCTTSHHHHHTTTGGG
T ss_pred hhcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHhcCCCcEEEecCCCHHHHHHcCccc
Confidence 3677778 9999999999999999999998 9988777665433 33333 4454321111222 2233 678
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
+|+||+++++......+..+...+.+.. ++..+.+
T Consensus 85 ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 85 ADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 9999999999777665555555444433 4444433
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=68.71 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHh---h-hccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---T-ISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E---a-~~~ADiViLavp 187 (434)
++|.|+|+|.+|.++++.|.+. |++|++.++. +...+.+.+.|+....+...+.+. + ++++|+||+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKS-KEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7899999999999999999999 9998766654 444566666676421112233322 1 468999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEec
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+......+-.....+....++..+.
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~ 104 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVS 104 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEc
Confidence 7665543334333344445555443
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.5e-06 Score=71.85 Aligned_cols=121 Identities=10% Similarity=0.065 Sum_probs=79.9
Q ss_pred cccCCCCEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 106 DAFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 106 ~~~~g~kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
..|+..++|+|||. |.+|..++++|++. |++| +......+ .-.|... ..++.|+....|+
T Consensus 17 ~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v-~~Vnp~~~-----~i~G~~~----y~sl~~l~~~vDl 80 (144)
T 2d59_A 17 EILTRYKKIALVGASPKPERDANIVMKYLLEH------GYDV-YPVNPKYE-----EVLGRKC----YPSVLDIPDKIEV 80 (144)
T ss_dssp HHHHHCCEEEEETCCSCTTSHHHHHHHHHHHT------TCEE-EEECTTCS-----EETTEEC----BSSGGGCSSCCSE
T ss_pred HHHcCCCEEEEEccCCCCCchHHHHHHHHHHC------CCEE-EEECCCCC-----eECCeec----cCCHHHcCCCCCE
Confidence 34541289999999 79999999999998 9974 33332211 1146654 5678888888999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
+++++|+..+.++++++...-. + .+++..|+.-..+.+ ..-..++.+ +.||+++-...+++
T Consensus 81 vvi~vp~~~~~~vv~~~~~~gi-~-~i~~~~g~~~~~l~~--~a~~~Gi~v--vGpnc~gv~~~~~~ 141 (144)
T 2d59_A 81 VDLFVKPKLTMEYVEQAIKKGA-K-VVWFQYNTYNREASK--KADEAGLII--VANRCMMREHERLL 141 (144)
T ss_dssp EEECSCHHHHHHHHHHHHHHTC-S-EEEECTTCCCHHHHH--HHHHTTCEE--EESCCHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHcCC-C-EEEECCCchHHHHHH--HHHHcCCEE--EcCCchhhcchhhc
Confidence 9999999999999988665432 2 344556653211111 011235554 45999998876654
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.7e-06 Score=83.08 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=59.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+.. ...+.+++++ +.|+|++|+|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 6899999999999999999874 1566653 3444344445566667631 1578999988 79999999999
Q ss_pred hHHHHHHHHHH
Q 013877 189 AAQADNYEKIF 199 (434)
Q Consensus 189 ~a~~~vl~eI~ 199 (434)
..+.++.....
T Consensus 75 ~~h~~~~~~al 85 (344)
T 3ezy_A 75 NTHSELVIACA 85 (344)
T ss_dssp GGHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 99988776543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=5.4e-06 Score=81.90 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEE-EecCCchhHHHHHHcCc--cccCCCcCCHHhhhcc--CCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKV-GLRKGSRSFAEARAAGF--TEENGTLGDIYETISG--SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~--~~~~~~~~~~~Ea~~~--ADiViLa 185 (434)
.||||||+|.||..++.+|+ +. .+++++. .++..++..+.+.+.|+ .. ..+.+|++++ .|+|+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 73 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVT 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEC
Confidence 58999999999999999998 42 1566553 34443444556667773 32 5789999876 8999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+..+.++.... ++.|+-|.
T Consensus 74 tp~~~h~~~~~~a---l~~Gk~vl 94 (344)
T 3mz0_A 74 SWGPAHESSVLKA---IKAQKYVF 94 (344)
T ss_dssp SCGGGHHHHHHHH---HHTTCEEE
T ss_pred CCchhHHHHHHHH---HHCCCcEE
Confidence 9999998877654 34455443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=68.75 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=54.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH---h-hhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---E-a~~~ADiViLavp 187 (434)
++|.|||+|.+|..+|+.|++. |++|++.++. +...+.+.+.|+....+...+.+ + -++++|+|++++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETS-RTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 5899999999999999999998 9998766654 45566677778743211122222 2 2578999999999
Q ss_pred chHHHH
Q 013877 188 DAAQAD 193 (434)
Q Consensus 188 d~a~~~ 193 (434)
+.....
T Consensus 81 ~~~~n~ 86 (140)
T 3fwz_A 81 NGYEAG 86 (140)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 877654
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.9e-06 Score=79.44 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+|.||..+ +..|++. +++++. .++..++..+.+.+.|... ...+.+++++ +.|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 379999999999998 8888775 777653 4444334445566667631 1568889886 5999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++.... |+.|+.|.
T Consensus 72 ~~~h~~~~~~a---l~~Gk~v~ 90 (332)
T 2glx_A 72 NELHREQTLAA---IRAGKHVL 90 (332)
T ss_dssp GGGHHHHHHHH---HHTTCEEE
T ss_pred hhHhHHHHHHH---HHCCCeEE
Confidence 99998877654 34566443
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-06 Score=83.46 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++|+|||+|.||.++++.|+... ++ +|.+++|. +..+.+.+ .|+... .+ +.++++++||+|++||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT 191 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF-----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT 191 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred cEEEEECccHHHHHHHHHHHHhC-----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence 89999999999999999998741 33 77778877 44555443 365321 14 8999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
|... .++. .+.++||++|+....+.
T Consensus 192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 192 RSTT--PLFA--GQALRAGAFVGAIGSSL 216 (313)
T ss_dssp CCSS--CSSC--GGGCCTTCEEEECCCSS
T ss_pred CCCC--cccC--HHHcCCCcEEEECCCCC
Confidence 9752 2332 35689999888776654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-06 Score=80.85 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=60.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cC------ccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|+||.++|..|... |+ +|++.++...+....+.. .+ ... ...+ .+++++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i---~~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI---YAGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEE---EECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEE---EeCC-HHHhCCCCE
Confidence 5899999999999999999998 88 887766543322222221 11 111 0234 467899999
Q ss_pred EEEeecchH----------------HHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 182 VLLLISDAA----------------QADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 182 ViLavpd~a----------------~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
||+++|... ..++++.|.++. |+.+| .++-+..
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVD 120 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHH
Confidence 999999633 245666677664 55544 4444544
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=5e-06 Score=84.19 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=68.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCcccc--CCCcCCHHhhhccCCEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE--NGTLGDIYETISGSDLV 182 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~--~~~~~~~~Ea~~~ADiV 182 (434)
..+.| ++|+|||+|.+|.+.++.++.. |.+|++.++.. ...+.+.+ .|.... .....+..+.++++|+|
T Consensus 164 ~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~~-~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvV 235 (377)
T 2vhw_A 164 PGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDINI-DKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235 (377)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCH-HHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEE
Confidence 35788 9999999999999999999988 99887766653 33444444 454210 00012466788899999
Q ss_pred EEeecchH--HHHH-HHHHHhcCCCCcEEEEec
Q 013877 183 LLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 183 iLavpd~a--~~~v-l~eI~~~Lk~g~iL~~s~ 212 (434)
|.+++... ...+ .++..+.|++|.+|++.+
T Consensus 236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 99885322 1122 345667899999888765
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00015 Score=75.44 Aligned_cols=197 Identities=12% Similarity=0.149 Sum_probs=112.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-------------------HHcC-ccccCCCcC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------------------RAAG-FTEENGTLG 170 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-------------------~~~G-~~~~~~~~~ 170 (434)
|.+|+|||+|-+|..+|..|.+. |++|+ |.+.+++..+.. .+.| +.. ..
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~------G~~V~-g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~----tt 89 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL------GHRVV-GYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF----AE 89 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----CS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCcEE-EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE----Ec
Confidence 48999999999999999999999 99974 666655433222 2222 111 45
Q ss_pred CHHhhhccCCEEEEeecc----------hHHHHHHHHHHhcCC---CCcEEEEec----cchhh----hhhcccccCCCC
Q 013877 171 DIYETISGSDLVLLLISD----------AAQADNYEKIFSCMK---PNSILGLSH----GFLLG----HLQSMGLDFPKN 229 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd----------~a~~~vl~eI~~~Lk---~g~iL~~s~----G~~i~----~~~~~~i~~~~d 229 (434)
+.+++++.||++|+|||. .....+.+.|.++|+ +|++|++-+ |..-. .+++ . ..+
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~---~-~~~ 165 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE---E-AGG 165 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT---T-TTT
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH---h-CCC
Confidence 788999999999999873 123456667888875 567776543 44311 1111 1 123
Q ss_pred ccE-EEeccC--CChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhcccccccch
Q 013877 230 IGV-IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER 306 (434)
Q Consensus 230 i~V-I~v~Pn--~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iettf~~E~~~Dlfge~ 306 (434)
.++ +...|. -||..+++....- -++ +.. .+.++.+.+..+...+....+ .++. .+-+.-.+-+.
T Consensus 166 ~~f~v~~~PErl~eG~a~~d~~~~~---------riV-iG~-~~~~a~~~~~~ly~~~~~~~~-~~~~-~~AE~~Kl~eN 232 (444)
T 3vtf_A 166 VKFSVASNPEFLREGSALEDFFKPD---------RIV-IGA-GDERAASFLLDVYKAVDAPKL-VMKP-REAELVKYASN 232 (444)
T ss_dssp CCCEEEECCCCCCTTSHHHHHHSCS---------CEE-EEE-SSHHHHHHHHHHTTTSCSCEE-EECH-HHHHHHHHHHH
T ss_pred CCceeecCcccccCCccccccccCC---------cEE-EcC-CCHHHHHHHHHHHhccCCCEE-Eech-hHHHHHHHHHH
Confidence 332 445663 4566665555432 111 121 245677777788777765422 2221 11112122222
Q ss_pred hhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 013877 307 GILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (434)
Q Consensus 307 tvL~G~~~aliea~~~~~v~~Gl~~e~A~~ 336 (434)
+.+ ..=-+++..+...+-+.|++..+..+
T Consensus 233 ~~r-avnIa~~NEla~ice~~GiDv~eV~~ 261 (444)
T 3vtf_A 233 VFL-ALKISFANEVGLLAKRLGVDTYRVFE 261 (444)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222 11113666677777777777665544
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.06 E-value=9.9e-06 Score=71.26 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=76.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++|+|||. |++|..++++|++. |++|+ .... .+..+ .-.|... ..++.|+.+..|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~-~vnp-~~~~~--~i~G~~~----~~sl~el~~~vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL-PVNP-RFQGE--ELFGEEA----VASLLDLKEPVDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE-EECG-GGTTS--EETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE-EeCC-CcccC--cCCCEEe----cCCHHHCCCCCCEEEEEeC
Confidence 89999999 89999999999999 99743 3222 21000 1146653 4578888888999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHH
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (434)
+....++++++...-- +.++.. .|+.-..+.+ ..-..++.++ .||+++-...+..
T Consensus 80 ~~~~~~v~~~~~~~gi-~~i~~~-~g~~~~~~~~--~a~~~Gir~v--gpnc~g~~~~~~~ 134 (140)
T 1iuk_A 80 PSALMDHLPEVLALRP-GLVWLQ-SGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLF 134 (140)
T ss_dssp HHHHTTTHHHHHHHCC-SCEEEC-TTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEEEEc-CCcCHHHHHH--HHHHcCCEEE--cCCccceEChhhc
Confidence 9988899988665432 345544 5542111111 0112355655 5999998765544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.6e-06 Score=81.58 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhh--ccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~--~~ADiViLavpd 188 (434)
.||||||+|.||..++.+|++. .+++++. .++...+..+.+.+.|+.. ..+.+|++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999999999999865 1566553 3444344445566677764 67899999 569999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++..... +.|+-|.
T Consensus 77 ~~h~~~~~~al---~~gk~vl 94 (354)
T 3db2_A 77 DKHAEVIEQCA---RSGKHIY 94 (354)
T ss_dssp TSHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HcCCEEE
Confidence 99988776543 3455443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=79.71 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=64.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
.||||||+|.||..++.+|++. .+++++...+.+....+.+.+.|+.. ..+.+++++ +.|+|++|+|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5799999999999999999875 15666544454454456666777754 678999987 789999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEE
Q 013877 190 AQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+.++..... +.|+-|.
T Consensus 77 ~h~~~~~~al---~aGkhVl 93 (359)
T 3e18_A 77 SHKELAISAL---EAGKHVV 93 (359)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HCCCCEE
Confidence 9988776543 3455443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=67.10 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH---hh-hccCCEEE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---Ea-~~~ADiVi 183 (434)
+++ ++|.|+|+|.+|..+++.|++. |++|++..+. ....+.+.+.|.....+...+.+ ++ ++++|+|+
T Consensus 4 ~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 4 IKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp --C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 455 8899999999999999999998 8887766654 33333333344321111122322 22 67899999
Q ss_pred Eeecch-HHHHHHHHHHhcCCCCcEEEEecc
Q 013877 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+++++. .....+......+.+..++..+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred ECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999975 332233333444555555555544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-05 Score=68.73 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhh--hccCC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea--~~~AD 180 (434)
..+.+ ++|.|||+|.+|..+++.|++.- |++|++.++. ....+.+.+.|.....+...+ ..++ ++++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~~-----g~~V~vid~~-~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRARY-----GKISLGIEIR-EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHHH-----CSCEEEEESC-HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhcc-----CCeEEEEECC-HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 34567 89999999999999999998630 6777766655 444566666776421111223 2344 67899
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCC
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g 205 (434)
+||+++|+......+-.....+.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~ 132 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYK 132 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCC
Confidence 9999999866543333333344443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=77.72 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCc-hhHHHHHHcCc-cccCCCcCCHHhhhc--cCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~-~~~~~~~~~~~Ea~~--~ADiViLav 186 (434)
.||||||+|.||..++..|+ +. .+++++...+.+. +..+.+.+.|. .. ..+.+++++ +.|+|++++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVETT----YTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSEE----ESCHHHHHTTSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 68999999999999999998 43 1566544334433 33345556676 32 568889886 699999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+..+.++.... |+.|+.|.
T Consensus 80 p~~~h~~~~~~a---l~~G~~v~ 99 (346)
T 3cea_A 80 PTPFHPEMTIYA---MNAGLNVF 99 (346)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred ChHhHHHHHHHH---HHCCCEEE
Confidence 999998877654 34566444
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=77.22 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
.||||||+|.||.. ++..|.+. .+++++ +.++..++..+.+.+.|+.. ..+.+++..+.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 58999999999996 88888763 156665 44555445455566667653 556777667899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEE
Q 013877 190 AQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL 208 (434)
.+.++.... |+.|+-|
T Consensus 77 ~h~~~~~~a---l~~G~~v 92 (319)
T 1tlt_A 77 SHFDVVSTL---LNAGVHV 92 (319)
T ss_dssp HHHHHHHHH---HHTTCEE
T ss_pred hHHHHHHHH---HHcCCeE
Confidence 998877654 3356533
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-06 Score=85.05 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=70.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC-------------CCc-----
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL----- 169 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------------~~~----- 169 (434)
+.+ .||+|||+|.+|...++.++.. |.+|++.++... ..+.+.+.|..... +..
T Consensus 188 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 188 VPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRPA-AKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp ECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSTT-HHHHHHHTTCEECCCCC-----------------C
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHHcCCceeecccccccccccccchhhhcch
Confidence 456 8999999999999999999988 999887766644 35666666653100 001
Q ss_pred -------CCHHhhhccCCEEEEee--cchHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 170 -------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 -------~~~~Ea~~~ADiViLav--pd~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.+++++++++|+||.++ |......++ ++....||+|++|++.+
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 14678899999999885 443333333 46788899999999886
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=79.38 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEE-EEecCCchhHHHHHHcCc--cccCCCcCCHHhhhc--cCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF--TEENGTLGDIYETIS--GSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~--~~~~~~~~~~~Ea~~--~ADiViLa 185 (434)
.||||||+|.||..++.+|+ .. .+++++ +.++..++..+.+.+.|+ .. ..+.+|+++ +.|+|+++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV-----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred eeEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEc
Confidence 58999999999999999998 42 156655 344444555566777773 32 578999987 48999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+..+.++..... +.|+-|.
T Consensus 95 tp~~~h~~~~~~al---~aGk~Vl 115 (357)
T 3ec7_A 95 ASNEAHADVAVAAL---NANKYVF 115 (357)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HCCCCEE
Confidence 99999988776543 3455443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=78.82 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++.+|++. .+.+++ +.++..++..+.+.+.|+.. ...+.+|+++ +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999876 034544 34454445555666667631 1578999998 78999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++.... |+.|+-|.
T Consensus 78 ~~h~~~~~~a---l~aGk~Vl 95 (329)
T 3evn_A 78 QDHYKVAKAA---LLAGKHVL 95 (329)
T ss_dssp GGHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 34455443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=63.85 Aligned_cols=91 Identities=16% Similarity=0.057 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcC---CHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~Ea~~~ADiViLavp 187 (434)
++|+|||.|.||.++++.|.+. | ++|++..|..+ ..+.....|+........ +..++++++|+||.++|
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHDLA-ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESCHH-HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCHH-HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 8999999999999999999998 8 78877776533 344444445422111122 24567789999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEec
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
......+++.... .|....+..
T Consensus 79 ~~~~~~~~~~~~~---~g~~~~~~~ 100 (118)
T 3ic5_A 79 FFLTPIIAKAAKA---AGAHYFDLT 100 (118)
T ss_dssp GGGHHHHHHHHHH---TTCEEECCC
T ss_pred chhhHHHHHHHHH---hCCCEEEec
Confidence 8877666655432 344444433
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-05 Score=74.61 Aligned_cols=151 Identities=12% Similarity=0.080 Sum_probs=91.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||+|+|+|.||..+++.+.+. +.+++...+.+.. ...|+.. ..++++++ ++|+||-.+.|..
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 47999999999999999999887 5554433454332 1367664 56778887 9999997777766
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHH--HHHhhcccccC-CCceEEEeec
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING-AGINSSFAVH 266 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~~~~G-~Gv~aliav~ 266 (434)
..+.++ ++.|. +|+-+.|++-..++. ....-+.+.+ ..+||.+--+.- .+-+.--...+ .-+- ++-.|
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~-l~~aa~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~~die-I~E~H 138 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNK-LDELSQNMPV-FFSANMSYGVHALTKILAAAVPLLDDFDIE-LTEAH 138 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHH-HHHHTTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTTSEEE-EEEEE
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHH-HHHHHhcCCE-EEECCccHHHHHHHHHHHHHHHhcCCCCEE-EEEcC
Confidence 665553 56665 455567886433221 1122344555 689998865411 00000000001 1122 23344
Q ss_pred C----C-CCHHHHHHHHHHHHHhCC
Q 013877 267 Q----D-VDGRATNVALGWSVALGS 286 (434)
Q Consensus 267 q----d-vsg~a~e~a~~la~aiG~ 286 (434)
. | .||.|+.++..+ ...|.
T Consensus 139 H~~K~DaPSGTA~~la~~i-~~~~~ 162 (243)
T 3qy9_A 139 HNKKVDAPSGTLEKLYDVI-VSLKE 162 (243)
T ss_dssp CTTCCSSSCHHHHHHHHHH-HHHST
T ss_pred CCCCCCCCCHHHHHHHHHH-HhcCc
Confidence 4 2 789999999998 88874
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.7e-05 Score=77.66 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=56.3
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~ 189 (434)
.||||||+|.||. .++.+|++. .++++++.++..++..+.+.+.|+.. ...+..+++ ++.|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599998764 15676655554444445566667641 023445555 7899999999999
Q ss_pred HHHHHHHHH
Q 013877 190 AQADNYEKI 198 (434)
Q Consensus 190 a~~~vl~eI 198 (434)
.+.++..+.
T Consensus 75 ~h~~~~~~a 83 (323)
T 1xea_A 75 VHSTLAAFF 83 (323)
T ss_dssp GHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 998877654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=71.32 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhh-hccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea-~~~ADiViLavp 187 (434)
|||.|||+|.+|..+|+.|.+. |++|++.++..++..+.+...|...-.+...+ ..++ ++++|+|+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5799999999999999999998 99987776654433333444554321111223 2233 678999999999
Q ss_pred chHHHHHHHHHHhcC-CCCcEEEEe
Q 013877 188 DAAQADNYEKIFSCM-KPNSILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~L-k~g~iL~~s 211 (434)
+.....++..++..+ ....+++-+
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 988776665555543 333455544
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=78.90 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=63.2
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+|.||. .++.+|++. .+++++ +.++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 5899999999998 799999875 145654 44554445556666778764 578999986 5899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEE
Q 013877 188 DAAQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL 208 (434)
+..+.++..... +.|+-|
T Consensus 99 ~~~h~~~~~~al---~aGk~V 116 (350)
T 3rc1_A 99 AVLHAEWIDRAL---RAGKHV 116 (350)
T ss_dssp GGGHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HCCCcE
Confidence 999988876543 345543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.92 E-value=3e-05 Score=76.24 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=60.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH-------c--CccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--GFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~--G~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|+||.++|..|... |+ +|++.++..++....+.+ . ..... ...+. +++++||+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~--~t~d~-~a~~~aDi 75 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI--GTDDY-ADISGSDV 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999999998 88 877766654332221111 0 11110 02455 78999999
Q ss_pred EEEee--------------cch--HHHHHHHHHHhcCCCCcEEE-Eeccc
Q 013877 182 VLLLI--------------SDA--AQADNYEKIFSCMKPNSILG-LSHGF 214 (434)
Q Consensus 182 ViLav--------------pd~--a~~~vl~eI~~~Lk~g~iL~-~s~G~ 214 (434)
||+++ +.. ...+++++|.++. |+++|+ .+...
T Consensus 76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 99999 322 2346777787775 566554 44443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.92 E-value=8.4e-06 Score=80.91 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC---ccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
++|+|||+|.||.+++++|+... ...+|.+++|..++..+.+.+.+ +.. . +.+.++++ ++|+|++|||.
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~----~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVF----DIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEECCCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC----CccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEeeCC
Confidence 89999999999999999998740 02367778877555555555432 211 1 45788999 99999999997
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
.. .++. ...+++|+.|.+...+.
T Consensus 198 ~~--pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 198 RK--PVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp SS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred CC--ceec--HHHcCCCeEEEECCCCC
Confidence 43 2221 25688998887665443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-05 Score=77.05 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHH--HcCcccc-CCC--cCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NGT--LGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G~~~~-~~~--~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|+||.++|..|... |+ +|.+.++...+....+. ..+.... +.. ..+..++++++|+||+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 7999999999999999999988 88 88766654322221122 2333110 000 1112467889999999
Q ss_pred eecchHH----------------HHHHHHHHhcCCCCcEE-EEeccchh
Q 013877 185 LISDAAQ----------------ADNYEKIFSCMKPNSIL-GLSHGFLL 216 (434)
Q Consensus 185 avpd~a~----------------~~vl~eI~~~Lk~g~iL-~~s~G~~i 216 (434)
+++.... .+++++|.++ .++++| .++.|+..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 9953321 2566677775 566655 46667754
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.88 E-value=4.2e-05 Score=76.02 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++..|... .+++++. .++..++..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999999874 1456543 44443444556666774100011468889886 58999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++.... |+.|+-|.
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 45566443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=8.3e-06 Score=80.04 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCc---cccCCCcCCHHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~Ea~~~ADiV 182 (434)
.+++ ++|.|||.|.||.+++..|.+. |. +|++.+|..++..+.+.+.+. ... ...+..++++++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 3678 9999999999999999999998 97 898888876665666666543 110 012456778899999
Q ss_pred EEeecchHH
Q 013877 183 LLLISDAAQ 191 (434)
Q Consensus 183 iLavpd~a~ 191 (434)
|.++|....
T Consensus 209 In~t~~~~~ 217 (297)
T 2egg_A 209 INTTSVGMH 217 (297)
T ss_dssp EECSCTTCS
T ss_pred EECCCCCCC
Confidence 999997654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-06 Score=83.33 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=61.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++| +|+|||.|.||.+++..|.+. |. +|.+.+|+.++..+.+.+.+... ..+..++++++|+||.+|
T Consensus 107 ~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 107 VKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp CCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEECS
T ss_pred CCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEECC
Confidence 355 899999999999999999998 88 88888886444333333323221 456778899999999999
Q ss_pred cchHHHH--HHHHHHhcCCCCcEEEEe
Q 013877 187 SDAAQAD--NYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 187 pd~a~~~--vl~eI~~~Lk~g~iL~~s 211 (434)
|.....+ .+. .+.++++++|++.
T Consensus 175 p~gm~p~~~~i~--~~~l~~~~~V~Di 199 (253)
T 3u62_A 175 SVGMKGEELPVS--DDSLKNLSLVYDV 199 (253)
T ss_dssp STTTTSCCCSCC--HHHHTTCSEEEEC
T ss_pred CCCCCCCCCCCC--HHHhCcCCEEEEe
Confidence 8643221 111 1235677776643
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.85 E-value=2.3e-05 Score=77.09 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=62.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.||..++.+|+.. . +.+++++. .++..++..+.+.+.|+.. ...+.+|+++ +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~--~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-P--RSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-C--TTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-C--CCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999864 0 01244443 3444345556667777731 1578999987 69999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++..+.. +.|+-|.
T Consensus 77 ~~H~~~~~~al---~~GkhVl 94 (334)
T 3ohs_X 77 PQHKAAVMLCL---AAGKAVL 94 (334)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---hcCCEEE
Confidence 99988776543 3455443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.3e-05 Score=78.11 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=56.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
.||||||+|.||..++.+|++. .+++++...+.+....+.+.+. +.. ..+.+++++ ++|+|++++|+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CVI----ESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CEE----ESSTHHHHTCTTCCEEEEESCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Ccc----cCCHHHHhhCCCCCEEEEeCChH
Confidence 6899999999999999999875 0456543333333222211111 222 467888885 799999999999
Q ss_pred HHHHHHHHHHhcCCCCcEE
Q 013877 190 AQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL 208 (434)
.+.++..+. ++.|+.|
T Consensus 81 ~h~~~~~~a---l~~Gk~v 96 (315)
T 3c1a_A 81 THAEITLAA---IASGKAV 96 (315)
T ss_dssp GHHHHHHHH---HHTTCEE
T ss_pred HHHHHHHHH---HHCCCcE
Confidence 998877654 3456533
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=80.51 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=68.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCc-----------------
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~----------------- 169 (434)
.+.| ++|+|||+|.+|...++.++.. |.+|++.+++.. ..+.+.+.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~~~-~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTRPE-VKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCGG-GHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 4678 9999999999999999999988 988877666543 44556667754200000
Q ss_pred ------CCHHhhhccCCEEEEe--ecchHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ------~~~~Ea~~~ADiViLa--vpd~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
.++.++++++|+||.+ +|......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0256788899999999 5422222333 35566799999998775
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.4e-05 Score=82.52 Aligned_cols=86 Identities=9% Similarity=0.175 Sum_probs=70.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhhhhccchhHH-H-HHHH
Q 013877 310 LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCM-E-ILYE 387 (434)
Q Consensus 310 ~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~~~~~~~p~~-~-~m~e 387 (434)
+|.-.+++.|.++.+.+.|++|.+++++++++.+.++.+++.+.|+++|+|+||++++ -|.. .+.|-+ . ..++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~ 468 (525)
T 3fr7_A 394 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTAR--LGSR---KWAPRFDYILTQQ 468 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTHHHHHTHHHHHHHHCHHHHHHHSCHHHH--HHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHhhhHHHHHHHhhhhhhhhhhhHHHHhhccHhhh--cccc---cchHhHHHHHHHH
Confidence 4666679999999999999999999999999999999999999999999999997665 4432 122322 1 3367
Q ss_pred HHHhccCChhHHH
Q 013877 388 CYEDVAAGSEIRS 400 (434)
Q Consensus 388 ~~~~v~~G~f~r~ 400 (434)
+|..|.+|..+++
T Consensus 469 ~~~~~~~~~~~~~ 481 (525)
T 3fr7_A 469 AFVTVDKDAPINQ 481 (525)
T ss_dssp HHHHHHTTCCCCH
T ss_pred hHHHhhcCCcchH
Confidence 9999999998764
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-05 Score=77.89 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=58.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+.| ++|+|||+|.||.++++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 165 l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~at 235 (404)
T 1gpj_A 165 LHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSAT 235 (404)
T ss_dssp CTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEECC
T ss_pred ccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEcc
Confidence 678 9999999999999999999988 98 888887765554466777775421 1246778889999999999
Q ss_pred cchHH
Q 013877 187 SDAAQ 191 (434)
Q Consensus 187 pd~a~ 191 (434)
|....
T Consensus 236 ~~~~~ 240 (404)
T 1gpj_A 236 AAPHP 240 (404)
T ss_dssp SSSSC
T ss_pred CCCCc
Confidence 86543
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.4e-05 Score=75.19 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=59.7
Q ss_pred ccCCCCEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~-A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiV 182 (434)
.++.|.||||||+|.||... +..+++. .+.+|+ |.++..++..+.|++.|+.. ...|.+|+++ +.|+|
T Consensus 19 ~~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV 90 (350)
T 4had_A 19 YFQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAV 90 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEE
T ss_pred cccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEE
Confidence 35566899999999999864 5666654 145654 34444455667777888742 1578999885 47999
Q ss_pred EEeecchHHHHHHHHHH
Q 013877 183 LLLISDAAQADNYEKIF 199 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~ 199 (434)
++++|+..+.++.....
T Consensus 91 ~I~tP~~~H~~~~~~al 107 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAA 107 (350)
T ss_dssp EECSCGGGHHHHHHHHH
T ss_pred EEeCCCchhHHHHHHHH
Confidence 99999999998776543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.6e-06 Score=82.40 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=60.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+. .+.. ....+..++++++|+||.+
T Consensus 114 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~--~~~~--~~~~~~~~~~~~aDiVIna 182 (277)
T 3don_A 114 GIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSL--NINK--INLSHAESHLDEFDIIINT 182 (277)
T ss_dssp TGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCS--CCEE--ECHHHHHHTGGGCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHH--hccc--ccHhhHHHHhcCCCEEEEC
Confidence 4678 9999999999999999999998 98 88888887555433332 2211 0123456778899999999
Q ss_pred ecchHHHHHHHHH-HhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKI-FSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI-~~~Lk~g~iL~~s 211 (434)
||.....++-..+ ...++++.+|++.
T Consensus 183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~ 209 (277)
T 3don_A 183 TPAGMNGNTDSVISLNRLASHTLVSDI 209 (277)
T ss_dssp CC-------CCSSCCTTCCSSCEEEES
T ss_pred ccCCCCCCCcCCCCHHHcCCCCEEEEe
Confidence 9976543321001 2346677776654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.4e-05 Score=74.32 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=57.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--Cccc-cCCC--cCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENGT--LGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~~~--~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|++|.++|..|... |+ +|++.++...+....+.+. +... .+.. ..+ .+++++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi 73 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVIL 73 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEE
Confidence 5899999999999999999988 87 7766655433222223321 1100 0000 123 467899999999
Q ss_pred eecchHH----------------HHHHHHHHhcCCCCcEEE-Eeccch
Q 013877 185 LISDAAQ----------------ADNYEKIFSCMKPNSILG-LSHGFL 215 (434)
Q Consensus 185 avpd~a~----------------~~vl~eI~~~Lk~g~iL~-~s~G~~ 215 (434)
+++.... .+++++|.++ .|+.+|+ .+-+..
T Consensus 74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 9964332 4555666666 5777654 444444
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.6e-05 Score=77.15 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCC-------------cCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGD 171 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------------~~~ 171 (434)
.+.| ++|+|||+|.+|.+.++.++.. |.+|++.++... ..+.+.+.|.... +.. ..+
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~~-~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s 240 (384)
T 1l7d_A 169 TVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAA-TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 240 (384)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCST-THHHHHHTTCEECCC-------------------
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeecccccccccccccchhhcC
Confidence 5688 9999999999999999999988 988777666544 3555666775420 000 000
Q ss_pred ----------HHhhhccCCEEEEee--cchHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 172 ----------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 172 ----------~~Ea~~~ADiViLav--pd~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
..+.++++|+||.++ |......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 241 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp ----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 567888999999998 422122232 45567799999988775
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.74 E-value=6e-05 Score=74.34 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=61.4
Q ss_pred cccCCCC--EEEEEcccchHHHHHHHHHhhhhhh--cCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--c
Q 013877 106 DAFNGIN--QIGVIGWGSQGPAQAQNLRDSLAEA--KSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G 178 (434)
Q Consensus 106 ~~~~g~k--kIgIIG~G~mG~A~A~nLrds~~~~--~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ 178 (434)
-+++.|| ||||||+|.||..++.+++....-. -.+.+|+ |.++..++..+.+.+.|+.. ...|.+|+++ +
T Consensus 18 ~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~ 94 (393)
T 4fb5_A 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPE 94 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTT
T ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCC
Confidence 4566665 7999999999999988876420000 0133544 34444556667778888742 1578999886 4
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.|+|++|+|+..+.++....+ +.|+-|.
T Consensus 95 iDaV~IatP~~~H~~~a~~al---~aGkhVl 122 (393)
T 4fb5_A 95 VDVVSVTTPNQFHAEMAIAAL---EAGKHVW 122 (393)
T ss_dssp CCEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CcEEEECCChHHHHHHHHHHH---hcCCeEE
Confidence 799999999999998776543 3455443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=71.17 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=61.4
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcC-ccccCCCcCCHHhhhc--cCCEEEEee
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG-FTEENGTLGDIYETIS--GSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G-~~~~~~~~~~~~Ea~~--~ADiViLav 186 (434)
.||||||+|.+|. .++.+|+.. +++++ +.++..++..+.+.+.+ ... ..+.+++++ +.|+|++++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVPF----AASAEQLITDASIDLIACAV 74 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCCB----CSCHHHHHTCTTCCEEEECS
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCcc----cCCHHHHhhCCCCCEEEEeC
Confidence 5899999999996 678888765 77754 44555555566677764 332 578999886 689999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL 208 (434)
|+..+.++.... |+.|+-|
T Consensus 75 p~~~h~~~~~~a---l~aGkhV 93 (336)
T 2p2s_A 75 IPCDRAELALRT---LDAGKDF 93 (336)
T ss_dssp CGGGHHHHHHHH---HHTTCEE
T ss_pred ChhhHHHHHHHH---HHCCCcE
Confidence 999998777653 3456533
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=72.16 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||||||+|+||..++..|++. .+++++...+.+.... ++.|+.. ....++.+. .+.|+|++|+|+..+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence 5899999999999999999874 1567653344333322 2256431 113344444 789999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 013877 192 ADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++.... ++.|+.+++.
T Consensus 79 ~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEI---LKKGICTADS 95 (304)
T ss_dssp HHHHHHH---HTTTCEEEEC
T ss_pred HHHHHHH---HHcCCeEEEC
Confidence 8777654 4457666544
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.70 E-value=7e-05 Score=75.63 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=63.8
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-cEEEE--EecCCchhHHHHHHcCccccCCCcCCHHhhhcc-------
Q 013877 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (434)
Q Consensus 112 kkIgIIG~G~---mG~A~A~nLrds~~~~~~G-~~Viv--g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~------- 178 (434)
.||||||+|. ||..++.+++.. + ++++. .++..++..+.+.+.|+.. .....+.+|++++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD------NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADG 85 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG------GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC------CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56653 3444445566677788731 0126789999875
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.|+|++++|+..+.++...... .|+-|.
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~---aGkhVl 113 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALE---AGLHVV 113 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCEEEECCCcHHHHHHHHHHHH---CCCeEE
Confidence 8999999999999887765433 455443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.8e-05 Score=75.97 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=63.0
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeec
Q 013877 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavp 187 (434)
.||||||+| .||..++.+|++. .+++++...+. .++..+.+.+.|+.. ..+.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 589999999 9999999999875 15565544443 344445666778764 6789999874 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++..... +.|+-|.
T Consensus 74 ~~~H~~~~~~al---~aGk~Vl 92 (387)
T 3moi_A 74 HQFHCEHVVQAS---EQGLHII 92 (387)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HCCCcee
Confidence 999988776543 3455443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.9e-05 Score=75.38 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=67.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCcccc-C-CCcCCHHhhhccCCEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE-N-GTLGDIYETISGSDLV 182 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~-~-~~~~~~~Ea~~~ADiV 182 (434)
..+++ ++|+|||.|.+|.++++.++.. |.+|++.++...+ .+.+.+ .|.... + ....+.+++++++|+|
T Consensus 162 ~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 162 PGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNHKR-LQYLDDVFGGRVITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp TBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHTTTSEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHhcCceEEEecCCHHHHHHHHhCCCEE
Confidence 35788 9999999999999999999988 9988777765433 344433 443210 0 0012466788899999
Q ss_pred EEeecchH--HHH-HHHHHHhcCCCCcEEEEec
Q 013877 183 LLLISDAA--QAD-NYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 183 iLavpd~a--~~~-vl~eI~~~Lk~g~iL~~s~ 212 (434)
|.+++... ... +.++..+.|++|.+|++.+
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 99998543 122 2356678899998887654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00021 Score=71.07 Aligned_cols=90 Identities=19% Similarity=0.108 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--c-------CccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~-------G~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|+||.++|..|... |+ +|++.++...+....+.. . .... ....+. +++++||+
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD~ 85 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKI--FGENNY-EYLQNSDV 85 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCE--EEESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEE--EECCCH-HHHCCCCE
Confidence 6999999999999999999988 88 866655543322211111 0 1011 012466 78999999
Q ss_pred EEEee--cc--------------hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLI--SD--------------AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLav--pd--------------~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||+++ |. ....+++++|.++. |+.+|+++
T Consensus 86 VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 86 VIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp EEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 99998 42 11334556666664 66665433
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.65 E-value=9.4e-05 Score=75.42 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=62.9
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-cEEEE--EecCCchhHHHHHHcCccccCCCcCCHHhhhcc-------
Q 013877 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (434)
Q Consensus 112 kkIgIIG~G~---mG~A~A~nLrds~~~~~~G-~~Viv--g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~------- 178 (434)
.||||||+|. ||..++..++.. + ++++. .++..++..+.+++.|+.. .....+.+|++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56543 3444445556677778731 1126789998876
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.|+|++++|+..+.++.... |+.|+-|.
T Consensus 111 vD~V~I~tp~~~H~~~~~~a---l~aGkhVl 138 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEF---LKRGIHVI 138 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHH---HTTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHH---HhCCCeEE
Confidence 89999999999998877654 44566443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=70.33 Aligned_cols=72 Identities=18% Similarity=0.085 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH--HcCccc--cC---CCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGFTE--EN---GTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--~~G~~~--~~---~~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|.+|.++|..|... +.|++|++.++...+....+. ..+... .. ....+.++ +++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVii 75 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVII 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEE
Confidence 5899999999999999999875 125788766665443322221 121100 00 01245655 899999999
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
++|.
T Consensus 76 av~~ 79 (310)
T 1guz_A 76 TAGL 79 (310)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 9964
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3.5e-05 Score=76.10 Aligned_cols=84 Identities=11% Similarity=0.181 Sum_probs=56.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.||+|||+|+||..++++|.++ .+++++. .++..++ +.+ .|+.. ..++++++.++|+|++++|+..
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~--~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~ 70 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL--DTK--TPVFD----VADVDKHADDVDVLFLCMGSAT 70 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC--SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTT
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH--hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHH
Confidence 5899999999999999999875 1455543 3443232 222 45442 4567777788999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 013877 191 QADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.+.+. ..++.|..+++.
T Consensus 71 h~~~~~---~al~aG~~Vv~e 88 (320)
T 1f06_A 71 DIPEQA---PKFAQFACTVDT 88 (320)
T ss_dssp HHHHHH---HHHTTTSEEECC
T ss_pred HHHHHH---HHHHCCCEEEEC
Confidence 755443 345567765544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00029 Score=61.25 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH---HHHHHcCccccCCCcCC---HHhh-hccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~~~~~~~---~~Ea-~~~ADiViL 184 (434)
++|.|+|+|.+|..+++.|.+. |++|++..+...+.. ......|+....+...+ ..++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 998877766432222 22223354321111222 2344 789999999
Q ss_pred eecchHHHHHHHHHHhcCCC-CcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKP-NSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~-g~iL~~s~G 213 (434)
++++......+......+.+ ..++..+.+
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 99988765555444444433 345554443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=77.10 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=70.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.|.| ++++|+|+|.+|.++|+.|+.. |.+|++.++. ......+...|+. +.+.+++++.+|+|+.++
T Consensus 262 ~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~-~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~at 328 (488)
T 3ond_A 262 MIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEID-PICALQATMEGLQ-----VLTLEDVVSEADIFVTTT 328 (488)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGTTTTCSEEEECS
T ss_pred cccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeCC
Confidence 4788 9999999999999999999998 9998776554 3344566667775 467889999999999887
Q ss_pred cchHHHHHH-HHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl-~eI~~~Lk~g~iL~~s~G~ 214 (434)
.... ++ .+....|+++.+|+.++.+
T Consensus 329 G~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 329 GNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 5332 22 2356789999888766543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=70.49 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=46.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH-------cCccccCCCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.+|.++|..|... |+ +|.+.++..++....+.. .+....-....+.++++++||+||
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6999999999999999999988 88 876665554322221111 111100000257888999999999
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
+++
T Consensus 84 ~a~ 86 (331)
T 1pzg_A 84 VTA 86 (331)
T ss_dssp ECC
T ss_pred Ecc
Confidence 998
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.9e-05 Score=75.75 Aligned_cols=89 Identities=9% Similarity=0.112 Sum_probs=60.6
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccC-CCcCCHHhhhc--cCCEEEEee
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~-~~~~~~~Ea~~--~ADiViLav 186 (434)
.||||||+|.||. .++.+|++. .+++++ +.++...+..+.+.+.|+...+ ....+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899998764 145654 3344333444556666763100 01567888887 789999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL 208 (434)
|+..+.++.... |+.|+-|
T Consensus 159 p~~~h~~~~~~a---l~aGk~V 177 (433)
T 1h6d_A 159 PNSLHAEFAIRA---FKAGKHV 177 (433)
T ss_dssp CGGGHHHHHHHH---HHTTCEE
T ss_pred CchhHHHHHHHH---HHCCCcE
Confidence 999998877654 3445533
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.9e-05 Score=77.36 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=56.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+-.. .-...+.+++.+++|+||.+
T Consensus 123 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~-~~~~~~~~~l~~~aDiIIna 194 (281)
T 3o8q_A 123 LLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYG-EVKAQAFEQLKQSYDVIINS 194 (281)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGGGCCSCEEEEEEC
T ss_pred CccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccC-CeeEeeHHHhcCCCCEEEEc
Confidence 4678 9999999999999999999998 96 88889987666556665543200 00023455655789999999
Q ss_pred ecchHHH
Q 013877 186 ISDAAQA 192 (434)
Q Consensus 186 vpd~a~~ 192 (434)
||.....
T Consensus 195 Tp~gm~~ 201 (281)
T 3o8q_A 195 TSASLDG 201 (281)
T ss_dssp SCCCC--
T ss_pred CcCCCCC
Confidence 9987653
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=72.36 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhh---cCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEee
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~---~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLav 186 (434)
+|||||+|.||..++.+++.. ++. ..+.+|+ |.++..++..+.+.+.|+.. ...|.+|+++ +.|+|++++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECS
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeC
Confidence 789999999999999988764 110 0011443 33444445556677778742 1568999886 479999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 013877 187 SDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+..+.++..... +.|+-|.
T Consensus 84 P~~~H~~~~~~al---~aGkhVl 103 (390)
T 4h3v_A 84 PGDSHAEIAIAAL---EAGKHVL 103 (390)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHHHHHHHHHHH---HcCCCce
Confidence 9999998776543 3455443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.55 E-value=8.1e-05 Score=73.18 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=66.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.+|+|+|+ |.||..++++|++. |++++....+..... .-.|+.. ..+++|+.+ ..|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 46788898 99999999999998 887544544321100 1146664 568889888 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchh
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i 216 (434)
..+.+++++.... .-..+|+++.||..
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 107 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPV 107 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999886553 22336678889864
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00023 Score=66.16 Aligned_cols=93 Identities=12% Similarity=0.185 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH---hh-hccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---Ea-~~~ADiViLavp 187 (434)
++|.|+|+|.+|..+++.|.+. |+ |++..+ ++...+.+. .|+..-.+...+.+ ++ ++++|.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid~-~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAED-ENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEESC-GGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEEC-CHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999988 88 665544 344455554 66432122223322 33 789999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEecc
Q 013877 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-~iL~~s~G 213 (434)
+......+......+.++ .++..+..
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 886654444445556666 56666544
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=74.22 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=51.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLa 185 (434)
.|+| ++|+|+|+|+||..+|+.|.+. |.+|++.++...+..+.+.+.|.. ..+.+++.. +||+++.|
T Consensus 170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~-----~v~~~~ll~~~~DIvip~ 237 (364)
T 1leh_A 170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGAD-----AVAPNAIYGVTCDIFAPC 237 (364)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCE-----ECCGGGTTTCCCSEEEEC
T ss_pred CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCE-----EEChHHHhccCCcEeecc
Confidence 6889 9999999999999999999998 999886665444434455555654 234455544 89999977
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
.
T Consensus 238 a 238 (364)
T 1leh_A 238 A 238 (364)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00013 Score=71.88 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=66.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--c-CCEEEEeec
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~-ADiViLavp 187 (434)
.+|.|+|. |.||..++++|++. |++++....+...-. .-.|+.. ..+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 46778898 99999999999998 888544554321100 1146664 567888877 5 999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchh
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i 216 (434)
+..+.+++++.... .-..+|+++.||..
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 108 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPV 108 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 99999999886553 22336678889864
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=3.5e-05 Score=74.36 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=53.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLa 185 (434)
.+++ ++|.|||.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+... .-...+.+++.+ ++|+||.+
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn~ 187 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYG-NIQAVSMDSIPLQTYDLVINA 187 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGGGCCCSCCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccC-CeEEeeHHHhccCCCCEEEEC
Confidence 4678 9999999999999999999998 8889999887665555554432200 000123344434 89999999
Q ss_pred ecchHHH
Q 013877 186 ISDAAQA 192 (434)
Q Consensus 186 vpd~a~~ 192 (434)
+|.....
T Consensus 188 t~~~~~~ 194 (272)
T 1p77_A 188 TSAGLSG 194 (272)
T ss_dssp CCC----
T ss_pred CCCCCCC
Confidence 9987654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00021 Score=70.19 Aligned_cols=86 Identities=8% Similarity=0.046 Sum_probs=59.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhh----------cc
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI----------SG 178 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~----------~~ 178 (434)
|.||||||+ |.+|..++..|++. +.+++...+.+......++.. +... ..+.++++ .+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAEF----FTEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCce----eCCHHHHHHHhhhhcccCCC
Confidence 579999999 78999999999987 776654444433322222222 2222 56778776 67
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.|+|++++|+..+.++..... +.|+-|.
T Consensus 73 vD~V~I~tP~~~H~~~~~~al---~aGkhVl 100 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMAL---RLGANAL 100 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CcEEEECCCchhhHHHHHHHH---HCCCeEE
Confidence 899999999999988776543 3455443
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=72.79 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh---hhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLA---EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~---~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLa 185 (434)
.||||||+|.||..++.++++.-. +...+.+|+. .++..++..+.+++.|+.. ...|.+|+++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 379999999999999999987500 0001234443 3444445556677778742 1578999886 57999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+..+.++..... +.|+-|.
T Consensus 104 tp~~~H~~~~~~al---~aGkhVl 124 (412)
T 4gqa_A 104 SPNHLHYTMAMAAI---AAGKHVY 124 (412)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HcCCCeE
Confidence 99999998776543 3455443
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=70.31 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=61.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCcccc------------C--CCcCCHHhhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEE------------N--GTLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~------------~--~~~~~~~Ea~ 176 (434)
.||||||+|.||..+++.|.+. .+++++...+. .......++.+|+..- + ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999865 13555433333 3333455556664210 0 0124678888
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
.+.|+|++|+|...+.+.... +++.|+.|++.+.
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~---~l~aGk~Vi~sap 111 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPL---YEKAGVKAIFQGG 111 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHH---HHHHTCEEEECTT
T ss_pred cCCCEEEECCCccccHHHHHH---HHHcCCceEeecc
Confidence 899999999999988776653 3344665555543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00021 Score=70.62 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=61.2
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+| .+|..++..|++. +.+++++. .++..++..+.+.+.|... .+.|.+|+++ +.|+|++++|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 589999999 8999999999864 11456543 3444344445566677621 1578999886 5899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEE
Q 013877 188 DAAQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL 208 (434)
+..+.++..... +.|+-|
T Consensus 92 ~~~H~~~~~~al---~aGkhV 109 (340)
T 1zh8_A 92 VELNLPFIEKAL---RKGVHV 109 (340)
T ss_dssp GGGHHHHHHHHH---HTTCEE
T ss_pred chHHHHHHHHHH---HCCCcE
Confidence 999988776543 345544
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.7e-05 Score=72.61 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=63.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCc---cccCCCcCCHHhhh-ccCCE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~Ea~-~~ADi 181 (434)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+. . ..+.+++. .++|+
T Consensus 117 ~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 117 PLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR-----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE-----EECSGGGTTCCCSE
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee-----EeeHHHhcccCCCE
Confidence 4678 9999999999999999999998 96 888888876666666665442 2 12333332 78999
Q ss_pred EEEeecchHHHHHHHHH-HhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKI-FSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI-~~~Lk~g~iL~~s 211 (434)
||.+||.....+.- .+ ...++++.+|++.
T Consensus 185 vInaTp~gm~~~~~-~i~~~~l~~~~~V~Dl 214 (272)
T 3pwz_A 185 VVNATSASLTADLP-PLPADVLGEAALAYEL 214 (272)
T ss_dssp EEECSSGGGGTCCC-CCCGGGGTTCSEEEES
T ss_pred EEECCCCCCCCCCC-CCCHHHhCcCCEEEEe
Confidence 99999976542110 00 1235566665544
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00023 Score=69.97 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=59.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhh-----------c
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------S 177 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~-----------~ 177 (434)
|.||||||+ |.||..++.+|++. +.+++...+.+......+... +... ..+.++++ +
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSEF----FTEFEFFLDHASNLKRDSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESSHHHHHHHHHHHTTSTTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCcE----ECCHHHHHHhhhhhhhccCC
Confidence 579999999 79999999999987 776654444433322222222 2222 46777776 5
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+.|+|++++|+..+.++..... +.|+-|.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al---~aGkhVl 101 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGL---RLGCDVI 101 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcEEEECCCcHHHHHHHHHHH---HCCCeEE
Confidence 7899999999999988776543 3455443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=69.79 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=44.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCC-------cCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~-------~~~~~Ea~~~ADiV 182 (434)
+||+|||.|+||.++|..|+.. |+ +|++.+.. .. ...+...++...... ..+..+++++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~Di~-~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDAN-ES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSS-HH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCC-cc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 65 56544443 32 222221111100000 02345789999999
Q ss_pred EEeecch
Q 013877 183 LLLISDA 189 (434)
Q Consensus 183 iLavpd~ 189 (434)
|++++..
T Consensus 79 iia~~~~ 85 (316)
T 1ldn_A 79 VICAGAN 85 (316)
T ss_dssp EECCSCC
T ss_pred EEcCCCC
Confidence 9997643
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=70.83 Aligned_cols=77 Identities=22% Similarity=0.099 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLa 185 (434)
.++| +++.|+|.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+... .-...+.+++. .++|+||.+
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~-~~~~~~~~~~~~~~~DivVn~ 187 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTG-SIQALSMDELEGHEFDLIINA 187 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGS-SEEECCSGGGTTCCCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccC-CeeEecHHHhccCCCCEEEEC
Confidence 4678 9999999999999999999998 8888888887555555555543210 00022333333 589999999
Q ss_pred ecchHH
Q 013877 186 ISDAAQ 191 (434)
Q Consensus 186 vpd~a~ 191 (434)
+|....
T Consensus 188 t~~~~~ 193 (271)
T 1nyt_A 188 TSSGIS 193 (271)
T ss_dssp CSCGGG
T ss_pred CCCCCC
Confidence 997654
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00019 Score=71.47 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.3
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccC--CEEEEeec
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~A--DiViLavp 187 (434)
.||||||+|.||.. ++.+|++. .+.+++...+.+. +..+.+.+.+... ...+.+|++++. |+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDIP---VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSCC---EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 89998765 1566653334333 3223333333221 257899998754 99999999
Q ss_pred chHHHHHHHHHHhcCCCCcEE
Q 013877 188 DAAQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL 208 (434)
+..+.++..... +.|+-|
T Consensus 78 ~~~H~~~~~~al---~aGkhV 95 (359)
T 3m2t_A 78 PQLHFEMGLLAM---SKGVNV 95 (359)
T ss_dssp HHHHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HCCCeE
Confidence 999988776543 345544
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00025 Score=70.20 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=59.0
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhcc--CCEEEEe
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~--ADiViLa 185 (434)
.||||||+|.||. .++..|++. .+++++...+.+ +..+.+.+ .|... ..+.+|++++ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC 72 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence 5899999999998 577777654 156665334433 44455555 34443 5788999876 8999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+..+.++..... +.|+-|.
T Consensus 73 tp~~~h~~~~~~al---~aGk~Vl 93 (349)
T 3i23_A 73 TPAHTHYDLAKQAI---LAGKSVI 93 (349)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HcCCEEE
Confidence 99999988776543 4555444
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00052 Score=68.07 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--c-----C--ccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----G--FTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~-----G--~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|.||.++|..|... |+ +|++.+....+....+.. . + ... ....+. +++++||+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD~ 75 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGADV 75 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCCE
Confidence 7999999999999999999988 87 855544443322211111 1 1 111 012466 88999999
Q ss_pred EEEee
Q 013877 182 VLLLI 186 (434)
Q Consensus 182 ViLav 186 (434)
||+++
T Consensus 76 Vi~a~ 80 (322)
T 1t2d_A 76 VIVTA 80 (322)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99998
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00044 Score=69.03 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+|.||.. ++..|++. .+++++...+.+.... +... +... ..+.+|+++ +.|+|++|+|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKV--KRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHH--HHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHH--HhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777764 1556653444433222 2233 3332 578999987 7899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+..+.++.... |+.|+-|..
T Consensus 77 ~~~H~~~~~~a---l~aGk~Vl~ 96 (364)
T 3e82_A 77 NATHAPLARLA---LNAGKHVVV 96 (364)
T ss_dssp GGGHHHHHHHH---HHTTCEEEE
T ss_pred hHHHHHHHHHH---HHCCCcEEE
Confidence 99998877654 345655443
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00053 Score=70.31 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=54.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHH-HHH---HcCccccCCCcC----CHHhhhc--cCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EAR---AAGFTEENGTLG----DIYETIS--GSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~-~A~---~~G~~~~~~~~~----~~~Ea~~--~ADi 181 (434)
.||||||+|.||..++.+|+.. .+++++...+.+....+ .+. +.|+.. ..... +.+|+++ +.|+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~ 94 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDA 94 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCE
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCE
Confidence 5899999999999999999864 15665444444333333 232 345310 00144 8899887 5899
Q ss_pred EEEeecchHHHHHHHHH
Q 013877 182 VLLLISDAAQADNYEKI 198 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI 198 (434)
|++++|+..+.++....
T Consensus 95 V~i~tp~~~h~~~~~~a 111 (444)
T 2ixa_A 95 VFVSSPWEWHHEHGVAA 111 (444)
T ss_dssp EEECCCGGGHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHH
Confidence 99999999998877653
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00025 Score=66.95 Aligned_cols=80 Identities=13% Similarity=0.285 Sum_probs=52.1
Q ss_pred CEEEEEcccchHHHHHHH--HHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~n--Lrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
++|+|||+|++|.++++. .... |++++...+.++..... ...|+.+. ...++++.+++.|+|++++|+.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3333 77766555554432221 11233321 1456888887779999999998
Q ss_pred HHHHHHHHHHh
Q 013877 190 AQADNYEKIFS 200 (434)
Q Consensus 190 a~~~vl~eI~~ 200 (434)
.+.++.+.+..
T Consensus 157 ~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 AAQSITDRLVA 167 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88888877654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=72.47 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=55.9
Q ss_pred CEEEEEcccchHHH-HHHHH-HhhhhhhcCCcEEE-EEecCCchhHHHHHH-cCccccCCCcCCHHhhhcc--CCEEEEe
Q 013877 112 NQIGVIGWGSQGPA-QAQNL-RDSLAEAKSDIVVK-VGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nL-rds~~~~~~G~~Vi-vg~r~~~~s~~~A~~-~G~~~~~~~~~~~~Ea~~~--ADiViLa 185 (434)
.||||||+|.||.. ++.++ ... .+++++ +.++...+. +.+.+ .|... ..+.+|++++ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~-~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPE-EQAPIYSHIHF----TSDLDEVLNDPDVKLVVVC 72 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGG-GGSGGGTTCEE----ESCTHHHHTCTTEEEEEEC
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHH-HHHHhcCCCce----ECCHHHHhcCCCCCEEEEc
Confidence 68999999999986 45524 332 156665 344433333 32222 24443 5788999876 8999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+|+..+.++.... |+.|+.|..
T Consensus 73 tp~~~h~~~~~~a---l~aGk~Vl~ 94 (345)
T 3f4l_A 73 THADSHFEYAKRA---LEAGKNVLV 94 (345)
T ss_dssp SCGGGHHHHHHHH---HHTTCEEEE
T ss_pred CChHHHHHHHHHH---HHcCCcEEE
Confidence 9999998877654 345665543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00048 Score=68.73 Aligned_cols=86 Identities=8% Similarity=-0.005 Sum_probs=60.6
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeec
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavp 187 (434)
.||||||+|.+|. .++..++.. +++++...+. .++..+.+.+.|... ...+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999994 567777665 7776544444 344456666776421 15789999875 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++..... +.|+-|.
T Consensus 98 ~~~H~~~~~~al---~aGkhVl 116 (361)
T 3u3x_A 98 SSERAELAIRAM---QHGKDVL 116 (361)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCeEE
Confidence 999988776543 3455443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00022 Score=69.57 Aligned_cols=67 Identities=19% Similarity=0.039 Sum_probs=54.3
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
+ +++.|||.|-+|.+++..|.+. |.+|.|.+|+.++..+.+ +.|+.. .+.+++ .++|+||.+||..
T Consensus 118 ~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp~G 183 (269)
T 3phh_A 118 Y-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATSAS 183 (269)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCTTC
T ss_pred C-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEcccCC
Confidence 7 9999999999999999999998 888999999877777777 666542 233343 3899999999965
Q ss_pred H
Q 013877 190 A 190 (434)
Q Consensus 190 a 190 (434)
.
T Consensus 184 m 184 (269)
T 3phh_A 184 L 184 (269)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0009 Score=68.69 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---Hhh-hccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---~Ea-~~~ADiViLavp 187 (434)
++|.|||+|.+|..+++.|++. |++|++.++ +....+.+++.|+..-.+...+. .++ +++||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId~-d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLDH-DPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEEC-CHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 998876554 45557777788874322222232 233 688999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-~iL~~s 211 (434)
+......+-.....+.|+ .+|.-+
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 877654444444445555 455544
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00042 Score=68.58 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=56.5
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc--CCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViLavpd 188 (434)
.||||||+|.||.. ++..|++. .+++++...+.+....+ +...+... ..+.+|++++ .|+|++++|+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~-~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH-ADWPAIPV----VSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH-TTCSSCCE----ESCHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH-hhCCCCce----ECCHHHHhcCCCCCEEEEeCCh
Confidence 58999999999997 78888764 14565533444332221 11113332 5789999875 8999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++.... |+.|+-|.
T Consensus 78 ~~H~~~~~~a---l~aGkhV~ 95 (352)
T 3kux_A 78 DTHFPLAQSA---LAAGKHVV 95 (352)
T ss_dssp TTHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HHCCCcEE
Confidence 9998877654 34555443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00044 Score=72.09 Aligned_cols=82 Identities=7% Similarity=0.092 Sum_probs=58.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.||||||+ |.||..++.+|++. ..+++++. .++..++..+.+.+.|+.. .....+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999999863 01566543 3443344445666677630 011578999986 6899999
Q ss_pred eecchHHHHHHHHH
Q 013877 185 LISDAAQADNYEKI 198 (434)
Q Consensus 185 avpd~a~~~vl~eI 198 (434)
++|+..+.++....
T Consensus 115 ~tp~~~H~~~~~~a 128 (479)
T 2nvw_A 115 SVKVPEHYEVVKNI 128 (479)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 99999998877654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0004 Score=71.31 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=58.1
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.||||||+ |.||..++.+|++. ..+++++.. ++..++..+.+.+.|+.. .....+.+|+++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999999863 015665433 443334445566667640 001578999986 6899999
Q ss_pred eecchHHHHHHHHH
Q 013877 185 LISDAAQADNYEKI 198 (434)
Q Consensus 185 avpd~a~~~vl~eI 198 (434)
++|+..+.++....
T Consensus 96 ~tp~~~H~~~~~~a 109 (438)
T 3btv_A 96 AIQVASHYEVVMPL 109 (438)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHH
Confidence 99999998877653
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0015 Score=64.32 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--cCcccc--CC---CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~~---~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.||.+++..|... |+ +|.+.+....+....+.+ .+.... .. ...+. +++++||+||
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi 75 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV 75 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEE
Confidence 6999999999999999999888 86 855444443322221221 110000 00 02455 7899999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++++
T Consensus 76 ~a~g 79 (309)
T 1ur5_A 76 VTSG 79 (309)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9974
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=64.77 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=56.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCc---hhHHHHHHc--CccccCCCcCCHHhhhccCCEEE
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~---~s~~~A~~~--G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
++||+|||.|+||..+|..|... |+ +|.+.+.... ...+..... .+.. ..+. +++++||+||
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVI 82 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEE
Confidence 38999999999999999999888 77 7766655432 222222211 1221 2466 7799999999
Q ss_pred Eeecch--------------H-HHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDA--------------A-QADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~--------------a-~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.... . ..++++++..+- |+.+|+++
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA 124 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 997211 1 234555566654 66665443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00049 Score=68.42 Aligned_cols=84 Identities=11% Similarity=0.192 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhc--cCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~--~ADiViLavp 187 (434)
.||||||+|.||.. ++..|++. .+++++...+.+.. +.+.+. +... ..+.+++++ +.|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 77777654 15666544444332 234444 3333 578899987 7899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++.... |+.|+-|.
T Consensus 75 ~~~H~~~~~~a---l~aGkhVl 93 (358)
T 3gdo_A 75 SGLHYEHTMAC---IQAGKHVV 93 (358)
T ss_dssp TTTHHHHHHHH---HHTTCEEE
T ss_pred cHHHHHHHHHH---HHcCCeEE
Confidence 99998877654 34455443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00042 Score=68.92 Aligned_cols=84 Identities=10% Similarity=0.113 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHHhhhcc--CCEEEEeec
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~Ea~~~--ADiViLavp 187 (434)
.||||||+|.||.. ++..|+.. .+++++...+.+... .+.+. +... ..+.+|++++ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 78777764 156664334433322 23334 3332 5788999876 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++..... +.|+-|.
T Consensus 75 ~~~H~~~~~~al---~aGkhVl 93 (362)
T 3fhl_A 75 DNTHYEYAGMAL---EAGKNVV 93 (362)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCeEE
Confidence 999988776543 3455443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00051 Score=68.57 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred CEEEEEc-ccchHHH-HH----HHHHhhhhhhcCC-cE----------EEEEecCCchhHHHHHHcCccccCCCcCCHHh
Q 013877 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (434)
Q Consensus 112 kkIgIIG-~G~mG~A-~A----~nLrds~~~~~~G-~~----------Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E 174 (434)
.|||||| +|.||.. ++ ..+++. + .. +.+..+..++..+.+.+.|+.. ...|.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4799999 9999998 78 778766 3 22 1256666666677777888742 1578999
Q ss_pred hhcc--CCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 175 a~~~--ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
++++ .|+|++++|+..+.++.... |+.|+-|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQA---INAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHH---HTTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHH---HHCCCeEE
Confidence 9875 89999999999998776554 45566554
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=65.06 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-ch-hHHHHHHcCccccCCCcCCHHhhh-----ccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SR-SFAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~-s~~~A~~~G~~~~~~~~~~~~Ea~-----~~ADiViL 184 (434)
.||||||+|.+|..+++.|.+.+ .+.+++...+.+ ++ ..+.+++.|.... ..+.++++ .+.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999995521 155554444443 33 3566777787420 23456665 35799999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|+..+.++....... ++|+.|++...
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 99988888777654332 34777766443
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=64.14 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=45.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH-------cCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|++|.++|..|... |+ +|.+.++...+....+.+ .+....-....+ .+++++||+|
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiV 73 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEE
Confidence 5899999999999999999988 87 777666553332111111 111000000235 7899999999
Q ss_pred EEeec
Q 013877 183 LLLIS 187 (434)
Q Consensus 183 iLavp 187 (434)
|++..
T Consensus 74 Viaag 78 (294)
T 1oju_A 74 VVTAG 78 (294)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99974
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0005 Score=67.07 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=94.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH---HHHHH----cCccccCCCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARA----AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~---~~A~~----~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.||+|+| +|.||..+++.+.+. .+++++...+...... +...- .|+.. ..+++++++++|+||
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVVI 78 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYLI 78 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEEE
Confidence 7999999 999999999998865 1566654444322110 00000 13332 468889999999999
Q ss_pred EeecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHH--HHHhhccccc--CCC
Q 013877 184 LLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GAG 258 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~~~~--G~G 258 (434)
-+++|....+.+..... .|. +|+=+.|++-..++. ....-+.+.+ ..+||.+--+.- ++-+.-.... ++-
T Consensus 79 DfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~~~-L~~aa~~~~v-v~a~N~s~Gv~l~~~~~~~aa~~l~~~~d 153 (272)
T 4f3y_A 79 DFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQKAQ-LRAAGEKIAL-VFSANMSVGVNVTMKLLEFAAKQFAQGYD 153 (272)
T ss_dssp ECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHTTTSEE-EECSCCCHHHHHHHHHHHHHHHHTSSSCE
T ss_pred EcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhccCCE-EEECCCCHHHHHHHHHHHHHHHhcCcCCC
Confidence 99999988877765443 344 444467886432221 1122234554 689998765411 0000000001 122
Q ss_pred ceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 013877 259 INSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (434)
Q Consensus 259 v~aliav~q----d-vsg~a~e~a~~la~aiG~ 286 (434)
+-- +-.|. | .||.|+.++..+....|.
T Consensus 154 iei-~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (272)
T 4f3y_A 154 IEI-IEAHHRHKVDAPSGTALMMGETIAAATGR 185 (272)
T ss_dssp EEE-EEEECTTCCSSSCHHHHHHHHHHHHTTTC
T ss_pred EEE-EEecCCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 333 44444 2 589999999999988875
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00028 Score=66.71 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=84.6
Q ss_pred cccccchhhhhhhhcccccchhhccCCcccccccc----cc--CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 013877 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPD----AF--NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (434)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~----~~--~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Viv 145 (434)
..+++...||-+-.|+.-- .|+-++.-..+.+ .| ...++++|||+|++|.++++.+... ..|++++.
T Consensus 42 ~gv~~~qiRkDls~fg~~G---~~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg 114 (212)
T 3keo_A 42 LGIDSATVRRDFSYFGELG---RRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHD----RNKMQISM 114 (212)
T ss_dssp HTSCHHHHHHHHHTTGGGT---TTSSSEEHHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCCCT----TSSEEEEE
T ss_pred HCCCHHHHHHHHHHHhhcC---CCCCCEEHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhhcc----cCCeEEEE
Confidence 4455566666665554322 2322332222211 12 1126899999999999999874211 12777766
Q ss_pred EecCCch-hHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcc
Q 013877 146 GLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222 (434)
Q Consensus 146 g~r~~~~-s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~ 222 (434)
..|.++. ....+.-.|+.+.+ ..++++.++ +.|++++|+|.....++.+.+.+.=- ..++-|++-
T Consensus 115 ~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GI-k~I~nFap~--------- 182 (212)
T 3keo_A 115 AFDLDSNDLVGKTTEDGIPVYG--ISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGI-KGILSFSPV--------- 182 (212)
T ss_dssp EEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-CCSCCEEEECSCGGGHHHHHHHHHHHTC-CEEEECSSS---------
T ss_pred EEeCCchhccCceeECCeEEeC--HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHcCC-CEEEEcCCc---------
Confidence 6665544 33221124554311 356777776 48999999999888788877654321 225666542
Q ss_pred cccCCCCccEEEecc
Q 013877 223 GLDFPKNIGVIAVCP 237 (434)
Q Consensus 223 ~i~~~~di~VI~v~P 237 (434)
.+..|+++.|-.++.
T Consensus 183 ~l~vp~~v~v~~vdl 197 (212)
T 3keo_A 183 HLTLPKDIIVQYVDL 197 (212)
T ss_dssp CCCCCTTSEEEECCH
T ss_pred ccCCCCCcEEEEeCc
Confidence 236677877766654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=65.30 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=54.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCccccCC--CcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~~~--~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|++|.+++..|... |+ +|++.+....+....+.+ ++...... ...+..+++++||+||++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ 81 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 81 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence 6899999999999999999988 76 666555443322222322 22100000 011236789999999999
Q ss_pred ecchH----------------HHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a----------------~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++... ..++.+.|.++ .|+.+|++.
T Consensus 82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 122 (318)
T 1y6j_A 82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 122 (318)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 87533 12344455555 577766554
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00065 Score=66.80 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhH---HHHHHcCccccCCCcCCHHhhhcc--CCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSF---AEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~---~~A~~~G~~~~~~~~~~~~Ea~~~--ADiViL 184 (434)
.||||||+|.+|..++..| .. +++++...+.+. +.. +.+.+.|+.+ ....|.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6899999999999888777 44 677654444332 222 2223346521 125789998864 899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEE
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
++|+..+.++..... +.|+-|.
T Consensus 74 ~tp~~~H~~~~~~al---~aGkhVl 95 (337)
T 3ip3_A 74 NTVFSLNGKILLEAL---ERKIHAF 95 (337)
T ss_dssp CSSHHHHHHHHHHHH---HTTCEEE
T ss_pred eCCcchHHHHHHHHH---HCCCcEE
Confidence 999999988776543 3455443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00034 Score=70.94 Aligned_cols=91 Identities=10% Similarity=0.082 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
.||+|||+| +|...+..+++. ..+++++ |..+..+++.+.|++.|+.. ..|.++++++.|+|++++|+..
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 589999999 799888888764 1145654 34555667778899999864 6789999999999999999987
Q ss_pred H----HHHHHHHHhcCCCCcEEEEeccc
Q 013877 191 Q----ADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 191 ~----~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+ .++.. ..|+.|+-|..=.-+
T Consensus 79 h~~~~~~~a~---~al~aGkhVl~EKPl 103 (372)
T 4gmf_A 79 AGGAGTQLAR---HFLARGVHVIQEHPL 103 (372)
T ss_dssp TTSHHHHHHH---HHHHTTCEEEEESCC
T ss_pred cchhHHHHHH---HHHHcCCcEEEecCC
Confidence 7 34433 334566655433333
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00065 Score=66.35 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=56.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcC-----ccccCCCcCCHHhhhccCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~Ea~~~AD 180 (434)
.++| +++.|+|.|-+|.+++..|.+. |. +|.+.+|..++..+.+.+.+ .........+..++++++|
T Consensus 124 ~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~D 196 (283)
T 3jyo_A 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_dssp TCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSS
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCC
Confidence 5678 9999999999999999999998 98 78888887665555544432 1100000236778889999
Q ss_pred EEEEeecchH
Q 013877 181 LVLLLISDAA 190 (434)
Q Consensus 181 iViLavpd~a 190 (434)
+||.+||...
T Consensus 197 iVInaTp~Gm 206 (283)
T 3jyo_A 197 GVVNATPMGM 206 (283)
T ss_dssp EEEECSSTTS
T ss_pred EEEECCCCCC
Confidence 9999999644
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0023 Score=63.77 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=47.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHH----Hc-----CccccCCCcCCHHh
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----AA-----GFTEENGTLGDIYE 174 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~----~~-----G~~~~~~~~~~~~E 174 (434)
|...+. +||+|||.|.+|.++|..|... |+ +|.+.+....+....+. .. ..... ...+. +
T Consensus 2 ~~~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~ 71 (324)
T 3gvi_A 2 PGSMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-A 71 (324)
T ss_dssp ----CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-G
T ss_pred CCCCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-H
Confidence 344555 8999999999999999999988 77 87766665443221111 10 11110 02344 8
Q ss_pred hhccCCEEEEeec
Q 013877 175 TISGSDLVLLLIS 187 (434)
Q Consensus 175 a~~~ADiViLavp 187 (434)
++++||+||++..
T Consensus 72 a~~~aDiVIiaag 84 (324)
T 3gvi_A 72 AIEGADVVIVTAG 84 (324)
T ss_dssp GGTTCSEEEECCS
T ss_pred HHCCCCEEEEccC
Confidence 9999999999964
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0025 Score=62.75 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=95.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh---HHHHH-----HcCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s---~~~A~-----~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.||+|+| +|.||..+++.+.+. .+++++...+..... .+... ..|+.. ..++++++.++|+|
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDVv 92 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEGI 92 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCEE
Confidence 6899999 999999999998864 166765554442211 00111 124433 46889999999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHH--HHHhhccccc--CC
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~~~~--G~ 257 (434)
|-.++|....+.+..... .|. +|+=+.|++-...+. ....-+.+.+ ..+||.+--+.- .+-+.--... ++
T Consensus 93 IDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~~~-L~~aa~~~~~-~~a~N~SiGv~ll~~l~~~aa~~l~~~~ 167 (288)
T 3ijp_A 93 LDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKTEEAQ-IADFAKYTTI-VKSGNMSLGVNLLANLVKRAAKALDDDF 167 (288)
T ss_dssp EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHHTTSEE-EECSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhCcCCE-EEECCCcHHHHHHHHHHHHHHHhcCCCC
Confidence 999999887776665433 344 444467886322211 0111234554 689998765421 0000000001 12
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCCC
Q 013877 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGSP 287 (434)
Q Consensus 258 Gv~aliav~q----d-vsg~a~e~a~~la~aiG~~ 287 (434)
-+-- +-.|. | .||.|+.++..++...|..
T Consensus 168 dieI-iE~HH~~K~DaPSGTA~~la~~i~~~~~~~ 201 (288)
T 3ijp_A 168 DIEI-YEMHHANKVDSPSGTALLLGQAAAEGRNIM 201 (288)
T ss_dssp EEEE-EEEECTTCCCSSCHHHHHHHHHHHHHTTSC
T ss_pred CEEE-EEccCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 2332 34444 2 7899999999999988853
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00045 Score=67.10 Aligned_cols=83 Identities=10% Similarity=0.159 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
.||||||+|.||..++.+|.... ...+++++...+.+. .+...|+. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence 68999999999999999987520 001455442233221 12234543 368899886 679999999999
Q ss_pred HHHHHHHHHHhcCCCCcEE
Q 013877 190 AQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL 208 (434)
.+.++.... |+.|+-|
T Consensus 77 ~H~~~~~~a---l~aGkhV 92 (294)
T 1lc0_A 77 SHEDYIRQF---LQAGKHV 92 (294)
T ss_dssp GHHHHHHHH---HHTTCEE
T ss_pred hHHHHHHHH---HHCCCcE
Confidence 998777654 3456643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0007 Score=67.87 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=66.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc---cCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~---~~~~~~~~~Ea~~~ADiVi 183 (434)
.+++ ++|.|||.|.+|.+.++.++.. |.+|++.+++..+ .+.+.+.|... .+....+..+.++++|+||
T Consensus 164 ~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 164 GVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVER-LSYLETLFGSRVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp TBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEE
Confidence 3677 9999999999999999999988 9888877776443 44444443211 0000123556778999999
Q ss_pred EeecchHH--HH-HHHHHHhcCCCCcEEEEec
Q 013877 184 LLISDAAQ--AD-NYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 184 Lavpd~a~--~~-vl~eI~~~Lk~g~iL~~s~ 212 (434)
.+++.... .. +.++..+.|++|.+|++..
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99975331 11 1334557789999888664
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.001 Score=66.37 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=52.9
Q ss_pred ccCCC-CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc-cCCCcCC---HHhhhccCCE
Q 013877 107 AFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD---IYETISGSDL 181 (434)
Q Consensus 107 ~~~g~-kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~---~~Ea~~~ADi 181 (434)
.++|- +||.|||+|.+|..++..|.+. ++|.++.+.. +..+.+.+..-.. .| +.+ +.++++++|+
T Consensus 11 ~~~g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~-~~~~~~~~~~~~~~~d--~~d~~~l~~~~~~~Dv 80 (365)
T 3abi_A 11 HIEGRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNN-ENLEKVKEFATPLKVD--ASNFDKLVEVMKEFEL 80 (365)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCH-HHHHHHTTTSEEEECC--TTCHHHHHHHHTTCSE
T ss_pred cccCCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCH-HHHHHHhccCCcEEEe--cCCHHHHHHHHhCCCE
Confidence 34442 5899999999999999998654 5777777653 3344443321110 01 223 4567899999
Q ss_pred EEEeecchHHHHHHHH
Q 013877 182 VLLLISDAAQADNYEK 197 (434)
Q Consensus 182 ViLavpd~a~~~vl~e 197 (434)
||.++|+..+..+.+.
T Consensus 81 Vi~~~p~~~~~~v~~~ 96 (365)
T 3abi_A 81 VIGALPGFLGFKSIKA 96 (365)
T ss_dssp EEECCCGGGHHHHHHH
T ss_pred EEEecCCcccchHHHH
Confidence 9999999987777764
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00033 Score=70.02 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=64.9
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC----c--CCHHhhhccC
Q 013877 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~m-G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----~--~~~~Ea~~~A 179 (434)
.++| +++.|||.|.| |..+|+.|... |..|.+.+|+..+.++.+.+.+......+ . .++++.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 6788 99999999976 99999999988 88888887764433333333332110000 1 3578999999
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
|+||.+++-... ++. ...+++|.+|++.+
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVg 275 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFA 275 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcC
Confidence 999999985321 011 23468998888774
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=67.87 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+... ..+..+ + ++|+||.+
T Consensus 119 ~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIna 185 (282)
T 3fbt_A 119 EIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIINC 185 (282)
T ss_dssp CCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEEC
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEEC
Confidence 3678 9999999999999999999998 98 88888887555444443222111 223334 4 89999999
Q ss_pred ecchH
Q 013877 186 ISDAA 190 (434)
Q Consensus 186 vpd~a 190 (434)
||...
T Consensus 186 Tp~Gm 190 (282)
T 3fbt_A 186 TPKGM 190 (282)
T ss_dssp SSTTS
T ss_pred CccCc
Confidence 98643
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0036 Score=62.23 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH--cC-------ccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G-------~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|.+|.++|..|... |+ ++.+.+....+....+.+ +. ... ...+..+++++||+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~~aDv 76 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLENSDV 76 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHCCCCE
Confidence 7999999999999999999988 76 776666554433222221 11 111 01123578999999
Q ss_pred EEEeec
Q 013877 182 VLLLIS 187 (434)
Q Consensus 182 ViLavp 187 (434)
||++..
T Consensus 77 VIi~ag 82 (321)
T 3p7m_A 77 VIVTAG 82 (321)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 999964
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0031 Score=62.22 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCcccc--C-CCcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE--N-GTLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~--~-~~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|++|.+++..|... |+ ++.+.+....+....+.+ .+.... + ....+..+++++||+||+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi 80 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVI 80 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEE
Confidence 6999999999999999999887 65 554444332222222221 111100 0 001145778999999999
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
+++.
T Consensus 81 ~ag~ 84 (317)
T 3d0o_A 81 CAGA 84 (317)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9853
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0015 Score=64.42 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=57.4
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc---CCEEEEeec
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~---ADiViLavp 187 (434)
.||||||+|.||. .++..|++. .+++++...+.+.+ ..|+.. ..+.+|++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 4899999999998 789999875 15565444444332 246653 6789998865 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 013877 188 DAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+..+.++..... +.|+-|.
T Consensus 91 ~~~H~~~~~~al---~aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKAL---VAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCcEE
Confidence 999988776543 3455444
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=64.33 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=59.1
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
++| +++.|||.|. +|.++|+.|... |..|++..+. ..++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999985 899999999988 8888876542 246889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+-.. ++. ..++|+|++|++++
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8532 222 24579999988764
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.002 Score=64.22 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHH--HHcCcccc--CCC-cCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTEE--NGT-LGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A--~~~G~~~~--~~~-~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+ ...++... +-. ..+..+++++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999988 76 6665554332222222 12232110 000 1223578999999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 974
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0026 Score=63.14 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--c-------CccccCCCcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~-------G~~~~~~~~~~~~Ea~~~AD 180 (434)
+||+|||.|.||.++|..|... |+ ++++.+....+....+.+ + .... ...+..+++++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 5899999999999999999988 76 776665554433222211 1 1111 0124568899999
Q ss_pred EEEEeecc
Q 013877 181 LVLLLISD 188 (434)
Q Consensus 181 iViLavpd 188 (434)
+||++.+.
T Consensus 72 vVii~ag~ 79 (314)
T 3nep_X 72 VCIITAGL 79 (314)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999753
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0016 Score=65.90 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLa 185 (434)
.++| |+|+|+|+|++|...|+.|+.. |.+|++.+.. ....+.+.+.|.. ..+.+++.. +||+++.|
T Consensus 172 ~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~~-~~~~~~a~~~ga~-----~v~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 172 SLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTD-TERVAHAVALGHT-----AVALEDVLSTPCDVFAPC 238 (355)
T ss_dssp CSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGGGGCCCSEEEEC
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-ccHHHHHHhcCCE-----EeChHHhhcCccceecHh
Confidence 6899 9999999999999999999988 9998855443 3224455556654 235667766 89998743
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=68.68 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=47.7
Q ss_pred CEEEEEcccch--HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---------CccccCCCcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~m--G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~~~~~~~Ea~~~AD 180 (434)
+||+|||.|+| |.+++..|...- + -.| +|++.+.. +...+..... .+.. +.|.+|++++||
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~-~-~~g-eV~L~Di~-~e~le~~~~~~~~l~~~~~~I~~----TtD~~eAl~dAD 77 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDE-R-MSG-TVALYDLD-FEAAQKNEVIGNHSGNGRWRYEA----VSTLKKALSAAD 77 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCS-S-CCE-EEEEECSS-HHHHHHHHHHHTTSTTSCEEEEE----ESSHHHHHTTCS
T ss_pred CEEEEECCChhHhHHHHHHHHHhcc-c-cCC-eEEEEeCC-HHHHHHHHHHHHHHhccCCeEEE----ECCHHHHhcCCC
Confidence 69999999998 578888887630 0 015 77665554 3222222211 1221 468899999999
Q ss_pred EEEEeecchHHH
Q 013877 181 LVLLLISDAAQA 192 (434)
Q Consensus 181 iViLavpd~a~~ 192 (434)
+||+++++....
T Consensus 78 fVI~airvG~~~ 89 (450)
T 3fef_A 78 IVIISILPGSLD 89 (450)
T ss_dssp EEEECCCSSCHH
T ss_pred EEEeccccCCcc
Confidence 999999876443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0025 Score=63.84 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ccccCC--CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~~--~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.||.++|..|... |+ ++++.+....+....+.+ ++ +..... ...+.++ +++||+||
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVI 94 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVV 94 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEE
Confidence 8999999999999999999988 86 666555433222222211 11 110000 1235554 89999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++..
T Consensus 95 itaG 98 (330)
T 3ldh_A 95 ITAG 98 (330)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 9853
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0027 Score=62.55 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=44.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc---------CccccCCCcCCHHhhhccCCEE
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~---------G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
||+|||.|+||.+++..|... |+ ++.+.+....+....+.+. ..... ...+. +++++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 699999999999999999887 76 5666555433322222211 11110 01455 789999999
Q ss_pred EEeecch
Q 013877 183 LLLISDA 189 (434)
Q Consensus 183 iLavpd~ 189 (434)
|++.+..
T Consensus 72 i~~ag~~ 78 (308)
T 2d4a_B 72 LVTAGIG 78 (308)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 9996543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0021 Score=63.58 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=45.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCcccc-CC-CcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE-NG-TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~-~~-~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|++|.+++..|... ++ ++.+.+....+....+.+ +..... +- ...+..+++++||+||++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ 79 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVIT 79 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEC
Confidence 6999999999999999999887 65 665555432222222322 111000 00 012456789999999999
Q ss_pred ecch
Q 013877 186 ISDA 189 (434)
Q Consensus 186 vpd~ 189 (434)
.+..
T Consensus 80 ag~~ 83 (318)
T 1ez4_A 80 AGAP 83 (318)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 8643
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0013 Score=63.96 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
.+ ++|.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+... ..+.. +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~~--~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhhh--cccCCEEEECCC
Confidence 46 8999999999999999999998 87 78889998666667776655431 11222 468999999999
Q ss_pred chHH
Q 013877 188 DAAQ 191 (434)
Q Consensus 188 d~a~ 191 (434)
....
T Consensus 185 ~gm~ 188 (271)
T 1npy_A 185 IGMK 188 (271)
T ss_dssp TTCT
T ss_pred CCcc
Confidence 7653
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0052 Score=61.44 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCccccCC-------------CcCCHHhhhc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENG-------------TLGDIYETIS 177 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~-------------~~~~~~Ea~~ 177 (434)
.||||||+|.||..+++.|.+. .+++++...+. .......+...|+....+ ...+.+++.+
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence 5899999999999999999865 14565443333 333445565555532100 0113445556
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|+|+.|+|.....+..+... +.|..+++.++
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa 109 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred CCCEEEECCCCchhHHHHHHHH---HcCCeEEEeCC
Confidence 8999999999998877765443 34655554443
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0035 Score=62.30 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCcccc-CC-CcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE-NG-TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~-~~-~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|++|.+++..|... ++ ++.+.+....+....+.+ +..... +- ...+..+++++||+||++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ 83 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence 6999999999999999999877 65 565555432222222322 221000 00 012456789999999999
Q ss_pred ecch
Q 013877 186 ISDA 189 (434)
Q Consensus 186 vpd~ 189 (434)
.+..
T Consensus 84 ag~~ 87 (326)
T 2zqz_A 84 AGAP 87 (326)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0017 Score=64.40 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH--hhhccCCEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~--Ea~~~ADiV 182 (434)
..++| +++.|||.|. +|.++|+.|... |..|.+..+.. .+++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T-------------------~~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGT-------------------STEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTS-------------------CHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCC-------------------CCchhhhhhccCCEE
Confidence 46889 9999999987 799999999998 88888776521 1344 789999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
|.+++-.. ++. ..++|+|++|+++.
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvg 239 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVG 239 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEe
Confidence 99999532 222 24579999988763
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.005 Score=61.53 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=59.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCcccc------------CC-Cc-CCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEE------------NG-TL-GDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~------------~~-~~-~~~~Ea 175 (434)
|.||||||+|.+|.-+++.|.+. .+++++...+. ...+...+...|+..- .+ .+ .+.++.
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 36899999999999999999864 14565433332 2333334444331100 00 01 245667
Q ss_pred hccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..++|+|+.|+|.....+..+... +.|+.+++.++-
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHH---HHTCCEEECTTS
T ss_pred hcCCCEEEECCCchhhHHHHHHHH---HcCCEEEEecCC
Confidence 789999999999998887776543 345556666553
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0027 Score=61.60 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=90.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh---HHHHHHc-----CccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAA-----GFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s---~~~A~~~-----G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|+|+ |.||..+++.+.+. .|++++...+.+... .+..... |+.. ..+.+++++++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999999 99999999988754 167665444432211 0111111 2221 34567788899999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEE-eccchhhhhhcccccCCCCccEEEeccCCChhhHH--HHHhhccccc--CC
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~-s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~~~~--G~ 257 (434)
|-+++|....+++..... .|.-+++ ..|++....+. .....+.+. +..+||.+--..- ++.+.--... ++
T Consensus 77 IDft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~~~~-L~~~a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~~ 151 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQA-IRDAAADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDYT 151 (273)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHHHH-HHHHTTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred EEcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHHHHH-HHHhcCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence 988888877776665433 4443443 56886532221 111223445 4578887654311 1111100000 12
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 013877 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (434)
Q Consensus 258 Gv~aliav~q----d-vsg~a~e~a~~la~aiG~ 286 (434)
-+-- +-.|. | .||.++.++..++...|.
T Consensus 152 diei-iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 152 DIEI-IEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp EEEE-EEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEE-EEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2322 33333 3 689999999999988875
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0027 Score=66.19 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=55.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC---CHHhhhccCCEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~Ea~~~ADiV 182 (434)
..+++ ++|.|||.|.+|.+++..|.+. .|++|.+.+|..++..+.+...++......+. +..++++++|+|
T Consensus 19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 45667 8999999999999999999875 14688888887554444443334321000022 345677899999
Q ss_pred EEeecchHHHHHHH
Q 013877 183 LLLISDAAQADNYE 196 (434)
Q Consensus 183 iLavpd~a~~~vl~ 196 (434)
|.++|+..+..+..
T Consensus 93 In~tp~~~~~~v~~ 106 (467)
T 2axq_A 93 ISLIPYTFHPNVVK 106 (467)
T ss_dssp EECSCGGGHHHHHH
T ss_pred EECCchhhhHHHHH
Confidence 99999876655443
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0027 Score=62.53 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|. +|.++|+.|... |..|.+..+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 36889 9999999987 699999999988 8888776542 2367889999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-... +. ..++|+|++|+++.
T Consensus 211 Avg~p~~---I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPNF---IT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCCCC---CC--HHHcCCCcEEEEec
Confidence 9984222 22 24579999988774
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0029 Score=62.34 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|. .|.++|+.|... |..|.+..+. ..++++.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 46889 9999999987 699999999988 8888776542 2367889999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-... +. ..++|+|++|+++.
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVg 232 (285)
T 3p2o_A 210 AAGCVNL---LR--SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSSCTTC---BC--GGGSCTTEEEEECC
T ss_pred CCCCCCc---CC--HHHcCCCeEEEEec
Confidence 9984222 22 24679999988774
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0037 Score=62.02 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC--chhHHHHHH--cC--ccccCCC--cCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFAEARA--AG--FTEENGT--LGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~--~~s~~~A~~--~G--~~~~~~~--~~~~~Ea~~~ADiV 182 (434)
+||+|||.|.||.++|..|... |+ +|++.++.. .+....+.+ +. +...... ..+..+++++||+|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvV 82 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVV 82 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEE
Confidence 7999999999999999999998 88 877666542 111111111 00 0000000 12235789999999
Q ss_pred EEee
Q 013877 183 LLLI 186 (434)
Q Consensus 183 iLav 186 (434)
|++.
T Consensus 83 Iiaa 86 (315)
T 3tl2_A 83 VITA 86 (315)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9997
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0032 Score=62.56 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=54.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---CchhHHHHHHc----CccccCCCcCC---HHhh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGD---IYET 175 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~~~~~~~---~~Ea 175 (434)
.++| +++.|+|.|-+|.+++..|.+. |. +|.+.+|+ .++..+.+.+. +....-....+ ..+.
T Consensus 151 ~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (315)
T 3tnl_A 151 DIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKE 223 (315)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhh
Confidence 4678 9999999999999999999998 98 88888887 34444444332 21110000222 3466
Q ss_pred hccCCEEEEeecchHH
Q 013877 176 ISGSDLVLLLISDAAQ 191 (434)
Q Consensus 176 ~~~ADiViLavpd~a~ 191 (434)
++++|+||.+||....
T Consensus 224 l~~aDiIINaTp~Gm~ 239 (315)
T 3tnl_A 224 IAESVIFTNATGVGMK 239 (315)
T ss_dssp HHTCSEEEECSSTTST
T ss_pred hcCCCEEEECccCCCC
Confidence 7899999999996543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0026 Score=64.74 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=60.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCCchhHHHHHHcC------ccccCCCc---CCHHhhhcc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FTEENGTL---GDIYETISG 178 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G---~~Vivg~r~~~~s~~~A~~~G------~~~~~~~~---~~~~Ea~~~ 178 (434)
|+||+|||+|.+|.++++.|.+. | .+|++..|+.++..+.+.+.+ +......+ .++++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 58999999999999999999987 6 278888776555444444321 21000001 234567777
Q ss_pred --CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 179 --SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 179 --ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|+||.++|+.....+.+... +.|..+++.++
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a~l---~~g~~vvD~a~ 108 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEACL---RTGVPYLDTAN 108 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHHHH---HHTCCEEESSC
T ss_pred hCCCEEEECCCcccChHHHHHHH---HhCCCEEEecC
Confidence 899999999887766665432 23444444433
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0033 Score=65.03 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcC---CHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~---~~~Ea~~~ADiViLavp 187 (434)
++|.|||.|.+|.+++..|.+. |.+|++..|..++..+.+...+ +......+. +..++++++|+||.++|
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 8999999999999999999988 8888888776433322222222 210000122 34467889999999999
Q ss_pred chHHHHHH
Q 013877 188 DAAQADNY 195 (434)
Q Consensus 188 d~a~~~vl 195 (434)
...+..+.
T Consensus 78 ~~~~~~i~ 85 (450)
T 1ff9_A 78 YTFHATVI 85 (450)
T ss_dssp --CHHHHH
T ss_pred cccchHHH
Confidence 86665443
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0029 Score=62.84 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=54.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---CchhHHHHHHc----CccccCCCcCCH---Hhh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YET 175 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~~~~~~~~---~Ea 175 (434)
.++| +++.|+|.|-+|.+++..|.+. |. +|.|.+|+ .++..+.+.+. +....-....+. .+.
T Consensus 145 ~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~ 217 (312)
T 3t4e_A 145 DMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEA 217 (312)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhh
Confidence 4678 9999999999999999999998 98 78888887 44444444332 211000002233 566
Q ss_pred hccCCEEEEeecchH
Q 013877 176 ISGSDLVLLLISDAA 190 (434)
Q Consensus 176 ~~~ADiViLavpd~a 190 (434)
++++|+||.+||...
T Consensus 218 l~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 218 LASADILTNGTKVGM 232 (312)
T ss_dssp HHHCSEEEECSSTTS
T ss_pred ccCceEEEECCcCCC
Confidence 789999999999764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.011 Score=59.26 Aligned_cols=92 Identities=20% Similarity=0.133 Sum_probs=58.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHc--------------------CccccCCCcC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAA--------------------GFTEENGTLG 170 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~--------------------G~~~~~~~~~ 170 (434)
.||||+|+|.+|..+++.|.+. .+++++...+..... ...++.+ ++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5899999999999999998765 135654333322211 1122222 2221 12
Q ss_pred CHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+..+...++|+|+.|+|.....+..+ ..+++.|+.|+++++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34455578999999999877665554 4678889877776653
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0054 Score=61.17 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=56.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhh---hhhhcCCcEEEEEecCC-chh----HH--HHHHc--CccccCCCcCCHHhhhc-
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKG-SRS----FA--EARAA--GFTEENGTLGDIYETIS- 177 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds---~~~~~~G~~Vivg~r~~-~~s----~~--~A~~~--G~~~~~~~~~~~~Ea~~- 177 (434)
|.||||||+|.+|..+++.|.+. +...|.+++|+...+.+ ... .. .+... +... +..+.+++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~---~~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLR---DDAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCS---BCCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcccc---CCCCHHHHhcC
Confidence 57999999999999999999764 11122356654333332 111 11 11111 1110 0137888885
Q ss_pred -cCCEEEEeecchHH-HHHHHHHHhcCCCCcEEEEe
Q 013877 178 -GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 178 -~ADiViLavpd~a~-~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.|+|+.|+|+..+ .+.++-+...|+.|+-|+..
T Consensus 79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999999876 22333345567788866544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.004 Score=61.35 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|. .|.++|+-|... |..|.+..+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 35789 9999999986 799999999988 8888776432 2367889999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++-.. ++. ..++|||++|+++.
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVG 233 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEec
Confidence 998422 222 24579999988774
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0036 Score=61.71 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCcccc-C-CCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE-N-GTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~-~-~~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|++|.+++..|... ++ ++.+.+....+....+.+ +..... + ....+..+++++||+||++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ 74 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLA 74 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEEC
Confidence 5899999999999999999877 53 565555442222222332 111000 0 0011336789999999998
Q ss_pred ecc
Q 013877 186 ISD 188 (434)
Q Consensus 186 vpd 188 (434)
.+.
T Consensus 75 ag~ 77 (310)
T 2xxj_A 75 AGV 77 (310)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=58.28 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=44.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC--cEEEEEecCCchhHHHHHH--cCcccc--CCC--cCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTEE--NGT--LGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G--~~Vivg~r~~~~s~~~A~~--~G~~~~--~~~--~~~~~Ea~~~ADiV 182 (434)
+||+|||. |.+|.+++..|... | .++.+.+... ....+.+ .+.... ..+ ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 58999998 99999999999877 6 4666555543 2223222 221110 000 13577899999999
Q ss_pred EEeec
Q 013877 183 LLLIS 187 (434)
Q Consensus 183 iLavp 187 (434)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99874
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0048 Score=60.80 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|. .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 36889 9999999997 599999999988 8888776422 2467889999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++.... +. ..++|+|++|++++
T Consensus 209 Avg~p~l---I~--~~~vk~GavVIDVg 231 (288)
T 1b0a_A 209 AVGKPGF---IP--GDWIKEGAIVIDVG 231 (288)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred CCCCcCc---CC--HHHcCCCcEEEEcc
Confidence 9995432 21 23479999988774
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00094 Score=62.78 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLavpd~a 190 (434)
++|+|||+|++|.++++.+... . |++++...+.++..... ...|+.+. ...++++.++ +.|+|++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999864322 2 67765555544432211 11233321 1456778776 5899999999998
Q ss_pred HHHHHHHHHh
Q 013877 191 QADNYEKIFS 200 (434)
Q Consensus 191 ~~~vl~eI~~ 200 (434)
+.++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776644
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0079 Score=57.25 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=57.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHHHHHHc----
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (434)
...|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....++..
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 356788 9999999999999999999998 87 666665543 3333322221
Q ss_pred -Ccccc--CCCcC--CHHhhhccCCEEEEeecchHHHHHHHHH
Q 013877 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (434)
Q Consensus 161 -G~~~~--~~~~~--~~~Ea~~~ADiViLavpd~a~~~vl~eI 198 (434)
+.... ..... +..+.++++|+||.++++......+.+.
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 11110 11111 2356788999999999877665555543
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=62.38 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=52.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCc--------cccCCCcCCHHhhhcc
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISG 178 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~--------~~~~~~~~~~~Ea~~~ 178 (434)
.++| +++.|+|.|-+|.+++..|.+. | +|++.+|+.++..+.+.+.+. .. + +.+..+.+.+
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-d--~~~~~~~~~~ 193 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEV-K--FSGLDVDLDG 193 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHE-E--EECTTCCCTT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeE-E--EeeHHHhhCC
Confidence 4678 9999999999999999999998 9 998888765444344333211 10 0 1233566778
Q ss_pred CCEEEEeecchHH
Q 013877 179 SDLVLLLISDAAQ 191 (434)
Q Consensus 179 ADiViLavpd~a~ 191 (434)
+|+||.++|....
T Consensus 194 ~DilVn~ag~~~~ 206 (287)
T 1nvt_A 194 VDIIINATPIGMY 206 (287)
T ss_dssp CCEEEECSCTTCT
T ss_pred CCEEEECCCCCCC
Confidence 9999999986543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0069 Score=63.07 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHc-C--ccc--------------c--CCCcCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAA-G--FTE--------------E--NGTLGD 171 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~-G--~~~--------------~--~~~~~~ 171 (434)
.||||||+|.||..++..+.+. .+++++...+. .++..+.+.+. | +.. . -..+.|
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D 98 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD 98 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence 5899999999999999988754 15665444443 33433333333 5 100 0 001468
Q ss_pred HHhhhc--cCCEEEEeecch-HHHHHHHHHHhcCCCCcEEE
Q 013877 172 IYETIS--GSDLVLLLISDA-AQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 172 ~~Ea~~--~ADiViLavpd~-a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+++++ +.|+|++++|+. .+.++... .|+.|+-|+
T Consensus 99 ~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv 136 (446)
T 3upl_A 99 NDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLV 136 (446)
T ss_dssp HHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEE
T ss_pred HHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEE
Confidence 889887 489999999864 44454433 345677555
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0072 Score=59.93 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
..++| +++.|||.|+ .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 36789 9999999996 699999999988 8888776421 2478899999999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+++.... +. ..++|+|++|++++
T Consensus 215 Avg~p~~---I~--~~~vk~GavVIDVg 237 (301)
T 1a4i_A 215 ATGQPEM---VK--GEWIKPGAIVIDCG 237 (301)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCccc---CC--HHHcCCCcEEEEcc
Confidence 9996432 21 23478999998774
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0088 Score=59.81 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ccccCC--CcCCHHhhhccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~~--~~~~~~Ea~~~A 179 (434)
... +||+|||.|.||.++|..|... |+ ++++.+....+....+.+ +. +..... ...+. +.+++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence 344 8999999999999999999887 76 666655543322222221 12 110000 02344 468999
Q ss_pred CEEEEeec
Q 013877 180 DLVLLLIS 187 (434)
Q Consensus 180 DiViLavp 187 (434)
|+||++..
T Consensus 89 DiVvi~aG 96 (331)
T 4aj2_A 89 KLVIITAG 96 (331)
T ss_dssp EEEEECCS
T ss_pred CEEEEccC
Confidence 99999853
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0052 Score=61.36 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=44.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCcccc-CC-CcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE-NG-TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~-~~-~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|.+|.++|..|... |+ ++.+.+....+....+.+ +..... +- ...+..+++++||+||++
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ 83 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEEC
Confidence 8999999999999999999988 76 666555432222222221 111100 00 012346789999999998
Q ss_pred ec
Q 013877 186 IS 187 (434)
Q Consensus 186 vp 187 (434)
..
T Consensus 84 ag 85 (326)
T 3vku_A 84 AG 85 (326)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0084 Score=51.63 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++|+|||. +..|..+.++|++. |++|+-.+.+... -.|... ..++.|+-. -|++++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEe
Confidence 378999997 56899999999998 8876544433211 146553 455666555 89999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhh
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (434)
|++.+.++++++... ... .|++..|+.-..+.+ +.-..++.++ ||+.+-.
T Consensus 67 p~~~v~~~v~e~~~~-g~k-~v~~~~G~~~~e~~~--~a~~~Girvv---~nC~gv~ 116 (122)
T 3ff4_A 67 NPQNQLSEYNYILSL-KPK-RVIFNPGTENEELEE--ILSENGIEPV---IGCTLVM 116 (122)
T ss_dssp CHHHHGGGHHHHHHH-CCS-EEEECTTCCCHHHHH--HHHHTTCEEE---ESCHHHH
T ss_pred CHHHHHHHHHHHHhc-CCC-EEEECCCCChHHHHH--HHHHcCCeEE---CCcCeEE
Confidence 999999999986653 223 467899984221111 0112466666 3776654
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0067 Score=58.72 Aligned_cols=80 Identities=15% Similarity=0.022 Sum_probs=54.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
++|++||+|+||..+++. . +++++..++ ++.- +.|... +.|+++++.++|+|+-|.++.+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~---~------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL---G------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH---S------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc---C------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999887 2 454433233 2211 125543 56788888899999999988766
Q ss_pred HHHHHHHHhcCCCCcEEE-Eecc
Q 013877 192 ADNYEKIFSCMKPNSILG-LSHG 213 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~-~s~G 213 (434)
.+.+ .+.|+.|.-++ .+-|
T Consensus 74 ~e~~---~~iL~aG~dvv~~S~g 93 (253)
T 1j5p_A 74 KEYS---LQILKNPVNYIIISTS 93 (253)
T ss_dssp HHHH---HHHTTSSSEEEECCGG
T ss_pred HHHH---HHHHHCCCCEEEcChh
Confidence 5544 44577887554 4444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0092 Score=61.93 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=51.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH-HHHcCccccCCCcCC---HHhh-hccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~---~~Ea-~~~ADiViLav 186 (434)
|||-|+|+|.+|..+|+.|... |++|++-+.. +...+. ....++..-.|...+ ++++ +++||+++.+|
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d-~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKD-GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESC-HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 8999999999999999999988 9998766554 444444 444555321222223 2333 78999999999
Q ss_pred cchHHH
Q 013877 187 SDAAQA 192 (434)
Q Consensus 187 pd~a~~ 192 (434)
++...-
T Consensus 77 ~~De~N 82 (461)
T 4g65_A 77 NTDETN 82 (461)
T ss_dssp SCHHHH
T ss_pred CChHHH
Confidence 887653
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=64.69 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=65.6
Q ss_pred cCCCCEEEEEccc----chHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 108 FNGINQIGVIGWG----SQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 108 ~~g~kkIgIIG~G----~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
|+- ++|+|||.+ ..|..+.++|++. | ..| +...+.... -.|... ..++.|+-+..|++
T Consensus 6 ~~p-~siAVvGas~~~~~~g~~v~~~l~~~------g~~~v-~pVnP~~~~-----i~G~~~----y~sl~~lp~~~Dla 68 (457)
T 2csu_A 6 FNP-KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKV-YPVNIKEEE-----VQGVKA----YKSVKDIPDEIDLA 68 (457)
T ss_dssp TSC-SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEE-EEECSSCSE-----ETTEEC----BSSTTSCSSCCSEE
T ss_pred cCC-CeEEEECcCCCCCchHHHHHHHHHHc------CCCEE-EEECCCCCe-----ECCEec----cCCHHHcCCCCCEE
Confidence 444 899999998 7899999999876 4 444 344432221 146664 56778887789999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
++++|+..+.++++++... .-..+|+++.||.
T Consensus 69 vi~vp~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 69 IIVVPKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp EECSCHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred EEecCHHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 9999999999999886543 2334778888884
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.02 Score=58.59 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=63.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----Cchh--------HHHHHHcCccccCCCcCCHH
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~----~~~s--------~~~A~~~G~~~~~~~~~~~~ 173 (434)
.+++ .||.|+|.|.+|.++|+.|... |. +|++.+++ ..+. ...|.+.... ....+++
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence 4566 8999999999999999999988 88 78888876 3331 3444443211 1246799
Q ss_pred hhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
|+++++|++|=+..|.... +++...|+++.+|.
T Consensus 259 eav~~ADVlIG~Sap~l~t---~emVk~Ma~~pIIf 291 (388)
T 1vl6_A 259 TALEGADFFIGVSRGNILK---PEWIKKMSRKPVIF 291 (388)
T ss_dssp HHHTTCSEEEECSCSSCSC---HHHHTTSCSSCEEE
T ss_pred HHHccCCEEEEeCCCCccC---HHHHHhcCCCCEEE
Confidence 9999999999887643321 24444577787664
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.035 Score=51.93 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=49.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
++||.|+|.|.+|.++++.|.+. |++|++..|...+ .......++....+...+.+ ++++|+||.+..+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGGG-HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChhh-hhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 38999999999999999999998 9998877776443 33444455532111133333 7889999998864
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.021 Score=57.18 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=58.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCccc--------cCCCc--CCHHhhhc-c
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE--------ENGTL--GDIYETIS-G 178 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~--------~~~~~--~~~~Ea~~-~ 178 (434)
+||+||| .|.+|..+++.|.+. .+++|+...+. ...........+... .+-.+ .+.++..+ +
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED 83 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence 6899999 899999999998765 13465444432 111111222222110 00001 14455556 8
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+|+||+|+|.....++.+.+. +.|..|++.+|.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 999999999988887776654 457777777763
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=58.07 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=46.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHH--HcC-ccccC-CCcCCHHhhhcc
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG-FTEEN-GTLGDIYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G-~~~~~-~~~~~~~Ea~~~ 178 (434)
+++.+ +||+|||. |.+|.++|..+... |+ +|++.+....+....+. .++ +.... ....+..+++++
T Consensus 4 ~~~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d 76 (343)
T 3fi9_A 4 SYLTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD 76 (343)
T ss_dssp CCSCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC
Confidence 34556 89999998 99999999998887 74 66554443222222111 111 21000 012467889999
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+||++.
T Consensus 77 ADvVvita 84 (343)
T 3fi9_A 77 AKYIVSSG 84 (343)
T ss_dssp EEEEEECC
T ss_pred CCEEEEcc
Confidence 99999985
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.026 Score=59.21 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=43.6
Q ss_pred CEEEEEcccchH--HHHHHHHHhhhhhhcC-CcEEEEEecCCchhHHHHH--------HcCccccCCCcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG--~A~A~nLrds~~~~~~-G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
+||+|||.|+|| .++|..|.+. .+. |.+|++.++..++ .+.+. ..+....=....|..+++++||
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD 79 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEER-LDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHHH-HHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCC
Confidence 699999999985 6566677532 011 5577766665332 21111 1111100001357788999999
Q ss_pred EEEEeecc
Q 013877 181 LVLLLISD 188 (434)
Q Consensus 181 iViLavpd 188 (434)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999974
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.018 Score=56.24 Aligned_cols=91 Identities=11% Similarity=0.188 Sum_probs=60.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---Hhh-hccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---~Ea-~~~ADiViLavp 187 (434)
++|.|+|+|..|..+++.|.+. |+ |++. +.+++..+ +.+.|...-.+...+. .++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999988 88 6554 44455555 6666664322223333 234 788999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-~iL~~s 211 (434)
+....-..-.....+.+. .++.-+
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEA 211 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEE
Confidence 875543333444556565 455544
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.024 Score=51.79 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=51.9
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCc-ccc--CCCcCCHHhhhccCC
Q 013877 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEE--NGTLGDIYETISGSD 180 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~--~~~~~~~~Ea~~~AD 180 (434)
...++| |+|.|.|. |-+|.++++.|.+. |++|++..|..++ .+.....++ ... |-+ .++.+++.+.|
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D 86 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLE-EDFSHAFASID 86 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTT-SCCGGGGTTCS
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccH-HHHHHHHcCCC
Confidence 356888 99999997 99999999999999 9999887776544 333334455 211 111 45567888999
Q ss_pred EEEEeecc
Q 013877 181 LVLLLISD 188 (434)
Q Consensus 181 iViLavpd 188 (434)
+||.+...
T Consensus 87 ~vi~~ag~ 94 (236)
T 3e8x_A 87 AVVFAAGS 94 (236)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998764
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.021 Score=56.87 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=55.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhh-hhhcCCcEEEEEecCCch---------hH-HHHHHcCccccCCCcCCHHhhhc--c
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR---------SF-AEARAAGFTEENGTLGDIYETIS--G 178 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~-~~~~~G~~Vivg~r~~~~---------s~-~~A~~~G~~~~~~~~~~~~Ea~~--~ 178 (434)
.+|+|||+|.+|..+++.|.+.- ...+.+++|+...+.+.. .+ +.+.+.|... +- ..+..+.+. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~-~~d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DR-AFSGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SS-BCCSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cc-cCCHHHHhcCCC
Confidence 47999999999999999998630 011124454333332211 12 2333445221 10 115566664 5
Q ss_pred CCEEEEeecchHHH-HHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~-~vl~eI~~~Lk~g~iL~~s 211 (434)
.|+|+.|+|+..+. ..++-+...|+.|+-|+.+
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 89999999987552 2344445556777766543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.015 Score=57.06 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=56.7
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~m-G~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| +++.|||.|.+ |..+|+.|... +.|-.|.+..+. ..++.+.+++||+||.+
T Consensus 155 ~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~A 210 (281)
T 2c2x_A 155 SIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVAA 210 (281)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEEC
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEEC
Confidence 6889 99999999976 99999998765 002467766432 24688899999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
++-... +. ..++|+|++|++.+
T Consensus 211 vg~p~~---I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 211 VGVAHL---LT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp SCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCcc---cC--HHHcCCCcEEEEcc
Confidence 994432 21 23478999888764
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.022 Score=56.93 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=56.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc--cCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
+||+||| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+.++ +.++|+||+|+|.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH 78 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence 6899999 799999999999865 13465444443221111111111100 0111223333 4789999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
....++.+.. ++.|..+++.++
T Consensus 79 ~~s~~~a~~~---~~aG~~VId~Sa 100 (345)
T 2ozp_A 79 GVFAREFDRY---SALAPVLVDLSA 100 (345)
T ss_dssp THHHHTHHHH---HTTCSEEEECSS
T ss_pred HHHHHHHHHH---HHCCCEEEEcCc
Confidence 8887776654 356777777665
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.03 Score=53.03 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=60.5
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH-HHHHHcCccccCCCcCCHHhhhcc
Q 013877 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 100 ~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
-||.. -.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+.. +.+.+.++....+. .. ++-+.+
T Consensus 22 ~~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~-~~-~~dL~~ 91 (223)
T 3dfz_A 22 MYTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKK-VG-EEDLLN 91 (223)
T ss_dssp CCEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSC-CC-GGGSSS
T ss_pred ccccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECC-CC-HhHhCC
Confidence 36666 56899 9999999999999999999998 888877665433333 33333233221111 12 345678
Q ss_pred CCEEEEeecchHHHHHHHHH
Q 013877 179 SDLVLLLISDAAQADNYEKI 198 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI 198 (434)
+|+||.++.+......+.+.
T Consensus 92 adLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 92 VFFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp CSEEEECCCCTHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHH
Confidence 99999999888776554444
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.034 Score=53.21 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=82.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEeecch
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLavpd~ 189 (434)
+||+|+|+ |.||..+++.+.+. .+++++...+.+ .++++++. ++|+||-+++|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------------~dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------------DPLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------------CCTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------------CCHHHHhccCCcEEEEccChH
Confidence 48999996 99999999998754 167776555432 12334443 789999888888
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCC--CCccEEEeccCCChhh--HHHHHhhcccccCCCceEEEe
Q 013877 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFP--KNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~--~di~VI~v~Pn~pg~~--vr~ly~~G~~~~G~Gv~alia 264 (434)
...+.+..... .|. +|+-+.|++-...+...-... +++.+ ...||+.--. +.++.+.--... .-+- ++-
T Consensus 57 a~~~~~~~a~~---~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~v-v~a~N~siGv~ll~~l~~~aa~~~-~die-IiE 130 (245)
T 1p9l_A 57 VVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTSV-LIAPNFAIGAVLSMHFAKQAARFF-DSAE-VIE 130 (245)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHTSTTCEE-EECSCCCHHHHHHHHHHHHHGGGC-SEEE-EEE
T ss_pred HHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCE-EEECCccHHHHHHHHHHHHHHhhc-CCEE-EEE
Confidence 88777765433 344 444466876432211000111 14444 4688876533 111222110011 1122 233
Q ss_pred ecC----C-CCHHHHHHHHHHHHHhC
Q 013877 265 VHQ----D-VDGRATNVALGWSVALG 285 (434)
Q Consensus 265 v~q----d-vsg~a~e~a~~la~aiG 285 (434)
.|. | +||.++.++..++...+
T Consensus 131 ~HH~~K~DaPSGTA~~lae~i~~~~~ 156 (245)
T 1p9l_A 131 LHHPHKADAPSGTAARTAKLIAEARK 156 (245)
T ss_dssp EECTTCCSSSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCCCHHHHHHHHHHHHhhc
Confidence 344 3 58999999999988765
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.024 Score=57.04 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=57.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCcccc----CCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~----~~~~~~~~Ea~~~ADiViLa 185 (434)
.||+|+| .|.+|..+++.|.+. . ++++...+..+...+.....+.... +-.+.+ ++..+++|+||+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~------p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~a 89 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH------PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCC 89 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC------SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEEC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC------CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEc
Confidence 5899999 899999999999876 4 4655444432222222222222100 000122 4455689999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|.....+.... + +.|..+++.++
T Consensus 90 tp~~~s~~~a~~---~-~aG~~VId~sa 113 (359)
T 1xyg_A 90 LPHGTTQEIIKE---L-PTALKIVDLSA 113 (359)
T ss_dssp CCTTTHHHHHHT---S-CTTCEEEECSS
T ss_pred CCchhHHHHHHH---H-hCCCEEEECCc
Confidence 998887766543 3 66887877766
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.039 Score=57.28 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=55.4
Q ss_pred EEEEEcccchHHHHHHHHHhhh----hhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEee
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSL----AEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~----~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLav 186 (434)
+|||||+|.+|..++..|.+.. ...+.+++++...+.+....+.. ..+... ..+.+++++ +.|+|+.++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEECC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEcC
Confidence 7999999999999998876421 11123555543344332222211 123322 467888886 579999999
Q ss_pred cc-hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 187 SD-AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 187 pd-~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+ ..+.+++.+ .|+.|+-|+..
T Consensus 87 p~~~~h~~~~~~---AL~aGKhVvte 109 (444)
T 3mtj_A 87 GGLEPARELVMQ---AIANGKHVVTA 109 (444)
T ss_dssp CSSTTHHHHHHH---HHHTTCEEEEC
T ss_pred CCchHHHHHHHH---HHHcCCEEEEC
Confidence 96 677666543 34566655543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.063 Score=53.00 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=43.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCchhHHHHH--HcCccc--cCCC--cCCHHhhhccCCEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR--AAGFTE--ENGT--LGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G--~~Vivg~r~~~~s~~~A~--~~G~~~--~~~~--~~~~~Ea~~~ADiV 182 (434)
+||+||| .|.+|.+++..|.+. | .+|++.+.... ...+. ...... .... ..+..++++++|+|
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence 7999999 899999999999887 7 46655443322 22221 111110 0000 12567889999999
Q ss_pred EEeec
Q 013877 183 LLLIS 187 (434)
Q Consensus 183 iLavp 187 (434)
|++.+
T Consensus 81 i~~ag 85 (326)
T 1smk_A 81 IVPAG 85 (326)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99975
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.041 Score=54.08 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEe
Q 013877 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLa 185 (434)
+++|.|||.|-+|.+ +|+.|++. |++|.+.++... ...+..++.|+....+ .+.++.. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEEC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEEC
Confidence 489999999999996 99999999 999988776542 2344556678764211 2344444 479999985
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.058 Score=48.05 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=46.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH-HhhhccCCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViLavpd 188 (434)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..... .++......+.+. .+++.+.|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5799999 599999999999999 999988777644322221 3332110001111 1678899999999865
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.033 Score=57.78 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=62.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEe----cC----Cchh---HH-----HHHHcCccccCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEENG 167 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~----r~----~~~s---~~-----~A~~~G~~~~~~ 167 (434)
.+++ ++|.|+|.|..|.+++..|.+. |. +|++.+ |+ .... .. .+...+.. .
T Consensus 183 ~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~---~ 252 (439)
T 2dvm_A 183 KISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE---N 252 (439)
T ss_dssp CTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---C
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---c
Confidence 4677 8999999999999999999998 87 788888 65 1111 10 11111110 0
Q ss_pred CcCCHHhhhccCCEEEEeecc--hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 168 TLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 168 ~~~~~~Ea~~~ADiViLavpd--~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
...+..|+++++|+||-++|. ....+ +....|+++.+|.+.
T Consensus 253 ~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDL 295 (439)
T 2dvm_A 253 IEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPL 295 (439)
T ss_dssp CCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEEC
T ss_pred ccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEEC
Confidence 134678999999999999997 54432 234457777777765
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.054 Score=54.22 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-----chhHHHHH--HcCccccCCCcC---CHHhhhccC
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-----SRSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-----~~s~~~A~--~~G~~~~~~~~~---~~~Ea~~~A 179 (434)
|.||+||| .|.+|..+.+.|.+. ..+++.....+. .+.....- -.|.. +-.+. +.++.++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~--~~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIV--ELPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTC--CCBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCcc--ceeEeccCCHHHHhcCC
Confidence 57999999 599999999988874 145554332221 12222110 01211 00111 344444899
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+||+|+|.....++.+++. +.|..+++.++
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 99999999988887777653 46777776665
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.023 Score=55.85 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc----CccccCC--CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG--TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~--~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.+|.++|..|..+ ++ ++.+.+....+..-.|.+. -+..... ...+..+.+++||+|+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVv 74 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIV 74 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEE
Confidence 6899999999999999999887 65 5555544332233233221 1110000 0122246789999999
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
++.
T Consensus 75 itA 77 (294)
T 2x0j_A 75 VTA 77 (294)
T ss_dssp ECC
T ss_pred Eec
Confidence 975
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.07 Score=53.23 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CchhHHHHHHc----C-c-----------cccCCC-----
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAA----G-F-----------TEENGT----- 168 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~--~~~s~~~A~~~----G-~-----------~~~~~~----- 168 (434)
.||||+|+|.+|.-+++.|.+. .+++++..++. +........++ | + .. ++.
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 5999999999999999998765 14676544442 33222222221 1 0 00 000
Q ss_pred -cCCHHhhh---ccCCEEEEeecchHHHHHHHHHHhcCCCCc-EEEEecc
Q 013877 169 -LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (434)
Q Consensus 169 -~~~~~Ea~---~~ADiViLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G 213 (434)
..+++++- .++|+||.|+|.....+... .+++.|. .|.+++.
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSap 124 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISAP 124 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESSC
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEeccC
Confidence 12444441 47899999999988876654 4566774 4555543
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.016 Score=58.33 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=20.2
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (434)
.+|||||+|.||..++..|++.
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEecCHHHHHHHHHHHhc
Confidence 5899999999999999999875
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.06 Score=51.21 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=54.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------chhHHHHHHc----
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (434)
.+.|++ ++|.|||+|-+|..++++|..+ |+ ++.+.++.. .+....++..
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 367888 9999999999999999999998 87 555543211 2222222111
Q ss_pred -Ccccc--CCCc--CCHHhhhccCCEEEEeecchHHHHHHHHH
Q 013877 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (434)
Q Consensus 161 -G~~~~--~~~~--~~~~Ea~~~ADiViLavpd~a~~~vl~eI 198 (434)
++... .... .+..+.++++|+||.++........+.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 138 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAA 138 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 21110 0001 12456788899999999876665566554
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.072 Score=48.07 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=47.3
Q ss_pred CEEEEEc-ccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCc-hhHHHH-HHcCccccCCCcCC---HHhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~-~s~~~A-~~~G~~~~~~~~~~---~~Ea~~~ADiViL 184 (434)
|+|.|+| .|.+|.++++.|. +. |++|++..|..+ +..+.+ ...++......+.+ +.++++++|+||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 5999999999999 78 999887777643 222221 11222110111233 4567889999999
Q ss_pred eecch
Q 013877 185 LISDA 189 (434)
Q Consensus 185 avpd~ 189 (434)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 98753
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.081 Score=54.91 Aligned_cols=74 Identities=20% Similarity=0.093 Sum_probs=44.4
Q ss_pred CEEEEEcccch-HHHHHHHHHh--hhhhhcC-CcEEEEEecCC--chhHH---HHH----HcCccccCCCcCCHHhhhcc
Q 013877 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSFA---EAR----AAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 112 kkIgIIG~G~m-G~A~A~nLrd--s~~~~~~-G~~Vivg~r~~--~~s~~---~A~----~~G~~~~~~~~~~~~Ea~~~ 178 (434)
+||+|||.|+. |.+++..|.. . +. +.+|++.++.. .+... .+. ..+....=....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 8887777765 3 11 22566665544 22111 111 11211000013577899999
Q ss_pred CCEEEEeecch
Q 013877 179 SDLVLLLISDA 189 (434)
Q Consensus 179 ADiViLavpd~ 189 (434)
||+||++++..
T Consensus 84 AD~VVitagv~ 94 (450)
T 1s6y_A 84 ADFVTTQFRVG 94 (450)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCCCC
Confidence 99999999954
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.043 Score=56.35 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=50.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---chhHHHHHHcCccccCCCcCCHHhhhcc-CCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~Ea~~~-ADiV 182 (434)
.++| ++|.|||.|..|.+.|+-|++. |++|.+.++.. +...+..++.|+....+ .+.++.+.+ +|+|
T Consensus 6 ~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d~v 76 (451)
T 3lk7_A 6 TFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFCYM 76 (451)
T ss_dssp TTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEEEE
T ss_pred hcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCCEE
Confidence 4678 9999999999999999999999 99998877643 23344556678754211 123345566 8999
Q ss_pred EEe
Q 013877 183 LLL 185 (434)
Q Consensus 183 iLa 185 (434)
++.
T Consensus 77 v~s 79 (451)
T 3lk7_A 77 IKN 79 (451)
T ss_dssp EEC
T ss_pred EEC
Confidence 985
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.063 Score=53.65 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=55.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCchhHHHHHHcCcc--------ccCCCcC--CHHhhhccC
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFT--------EENGTLG--DIYETISGS 179 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~--------~~~~~~~--~~~Ea~~~A 179 (434)
.||+||| .|.+|.-+.+.|.+. ..++++...+ ..+.........++. ..+-.+. +.++ ++++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 6899999 899999999988765 1346544432 111111122222221 0000011 3333 4789
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+||+|+|.....++..... +.|..|++.++
T Consensus 79 DvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 99999999988887776543 45666776655
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.13 Score=51.47 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.|+| .||++||=| +++.|++..+..- |.+|.+...++ ....+ .|++.|.... ...+++|++
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKGV 222 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEECHHHHh
Confidence 5788 999999986 9999999999887 99887765432 12222 3336673210 156899999
Q ss_pred ccCCEEEEeec
Q 013877 177 SGSDLVLLLIS 187 (434)
Q Consensus 177 ~~ADiViLavp 187 (434)
++||+|+..+=
T Consensus 223 ~~aDvvytd~w 233 (333)
T 1duv_G 223 EGADFIYTDVW 233 (333)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEeCCc
Confidence 99999998544
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.13 Score=53.75 Aligned_cols=77 Identities=21% Similarity=0.094 Sum_probs=43.8
Q ss_pred CEEEEEcccch-HHHHHHHHHhhhhhhcC-CcEEEEEecCCchhHH---HHH----HcCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFA---EAR----AAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~m-G~A~A~nLrds~~~~~~-G~~Vivg~r~~~~s~~---~A~----~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|+. |.++|..|.... .+. +.+|++.++...+... .+. ..+....=....|..+++++||+|
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~--~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC--CCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence 59999999998 565666665430 011 3366666654332111 111 111110000135778999999999
Q ss_pred EEeecchH
Q 013877 183 LLLISDAA 190 (434)
Q Consensus 183 iLavpd~a 190 (434)
|+++|...
T Consensus 107 Viaag~~~ 114 (472)
T 1u8x_X 107 MAHIRVGK 114 (472)
T ss_dssp EECCCTTH
T ss_pred EEcCCCcc
Confidence 99998743
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.077 Score=51.80 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=41.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecC-CchhH-HHHHHc--------CccccCCCcCCHHhhhcc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSF-AEARAA--------GFTEENGTLGDIYETISG 178 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~-~~~s~-~~A~~~--------G~~~~~~~~~~~~Ea~~~ 178 (434)
+||+||| .|.+|.+++..|... |+ ++.+.+++ +.... ..+.+. .... ..+..+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v----~~~~~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV----RQGGYEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE----EECCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEE----EeCCHHHhCC
Confidence 5899999 999999999999877 65 45444441 22111 111110 0111 0123678999
Q ss_pred CCEEEEeec
Q 013877 179 SDLVLLLIS 187 (434)
Q Consensus 179 ADiViLavp 187 (434)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999975
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.14 Score=51.35 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~~~~~~~~~E 174 (434)
.|+| .||++||=| +++.|++..+..- |.+|.+...+. ....+ .|++.| +.. ..+++|
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 220 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL----TEDPKE 220 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE----ESCHHH
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 5788 999999986 9999999999887 99887765432 12222 333667 332 568999
Q ss_pred hhccCCEEEEeec
Q 013877 175 TISGSDLVLLLIS 187 (434)
Q Consensus 175 a~~~ADiViLavp 187 (434)
++++||+|+..+=
T Consensus 221 av~~aDvvytd~w 233 (335)
T 1dxh_A 221 AVKGVDFVHTDVW 233 (335)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhCCCCEEEeCCc
Confidence 9999999998543
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.073 Score=54.92 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=48.8
Q ss_pred CCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
..+++|.|||+|-.|.+ +|+-|.+. |++|.+.+...+...+..++.|+....+ .+. +.++.+|+|++.
T Consensus 16 ~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIG--HAE-EHIEGASVVVVS 84 (475)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEES--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 44589999999999997 99999998 9998877765444344555678764211 122 456789998874
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.04 Score=52.88 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=49.8
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCC---HHhhhccC
Q 013877 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGD---IYETISGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~---~~Ea~~~A 179 (434)
++| +++.|+| .|-+|.+++..|.+. |.+|++.+|+.++..+.+.+. ++......+.+ ..+++++.
T Consensus 117 l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 189 (287)
T 1lu9_A 117 VKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGA 189 (287)
T ss_dssp CTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhC
Confidence 678 9999999 999999999999998 998888888644433333221 21100000222 34567778
Q ss_pred CEEEEeecc
Q 013877 180 DLVLLLISD 188 (434)
Q Consensus 180 DiViLavpd 188 (434)
|+||.+++.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 888888864
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.18 Score=50.07 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=51.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|+| .||++||= +++..|++..+..- |.+|.+...++ ....+ .|++.|.... ...+++|+++
T Consensus 152 ~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav~ 222 (315)
T 1pvv_A 152 TIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE--LLHDPVKAVK 222 (315)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHTT
T ss_pred CcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHhC
Confidence 5788 99999997 79999999999887 99887765432 12222 2336673210 1568999999
Q ss_pred cCCEEEEee
Q 013877 178 GSDLVLLLI 186 (434)
Q Consensus 178 ~ADiViLav 186 (434)
+||+|+..+
T Consensus 223 ~aDvvy~~~ 231 (315)
T 1pvv_A 223 DADVIYTDV 231 (315)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEcc
Confidence 999999854
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.046 Score=50.21 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEe
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLa 185 (434)
||+|.|.| .|-+|.++++.|.+. | ++|++..|..++..+ ....++......+.+ +.++++++|+||.+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 38899999 699999999999998 9 888877776433211 111122110111233 45678899999988
Q ss_pred ecchHHHHHHHHHHhcC---CCCcEEEEec
Q 013877 186 ISDAAQADNYEKIFSCM---KPNSILGLSH 212 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~L---k~g~iL~~s~ 212 (434)
..........+.+.+.+ +.+.+|.+++
T Consensus 96 a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 96 LTGEDLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp CCSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence 77544332233343333 2344554543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.091 Score=51.81 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=43.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC----ch-hHHHHH--HcC-cccc-C-CCcCCHH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SR-SFAEAR--AAG-FTEE-N-GTLGDIY 173 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~----~~-s~~~A~--~~G-~~~~-~-~~~~~~~ 173 (434)
+||+|||. |.+|.+++..|... |+ +|.+ .+.+ .. ....+. ..+ +... + ....+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l-~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQL-LEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEE-ECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEE-EcCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence 69999997 99999999999887 64 5554 4443 21 111111 122 1100 0 0024678
Q ss_pred hhhccCCEEEEeec
Q 013877 174 ETISGSDLVLLLIS 187 (434)
Q Consensus 174 Ea~~~ADiViLavp 187 (434)
+++++||+||++..
T Consensus 79 ~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 79 TAFKDADVALLVGA 92 (329)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhCCCCEEEEeCC
Confidence 89999999998854
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.1 Score=49.08 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=53.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh--HHHH------HHcCccccCCCcCC---HHhhhcc
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISG 178 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s--~~~A------~~~G~~~~~~~~~~---~~Ea~~~ 178 (434)
+++|.|+|. |.+|.++++.|.+. |++|++..|..+.. .+++ ...|+....+.+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence 378999996 99999999999998 99887777753221 1111 22354321111333 4567889
Q ss_pred CCEEEEeecch---HHHHHHHHH
Q 013877 179 SDLVLLLISDA---AQADNYEKI 198 (434)
Q Consensus 179 ADiViLavpd~---a~~~vl~eI 198 (434)
+|+||.+.... .+..+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (308)
T 1qyc_A 78 VDVVISTVGSLQIESQVNIIKAI 100 (308)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCcchhhhhHHHHHHHH
Confidence 99999998753 234455443
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.079 Score=55.17 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=51.5
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe--ec
Q 013877 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS 187 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa--vp 187 (434)
+++|.|||.|-.|.+ +|+-|++. |++|.+.+...+...+..++.|+... .....+.+.++|+||+. +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence 489999999999996 89999999 99998777665555566667787642 22233456789999985 55
Q ss_pred c
Q 013877 188 D 188 (434)
Q Consensus 188 d 188 (434)
+
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.091 Score=52.13 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=52.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEE-EEecCCchhHH------HHH---HcCccccCCCcC---CHHhhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFA------EAR---AAGFTEENGTLG---DIYETI 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G--~~Vi-vg~r~~~~s~~------~A~---~~G~~~~~~~~~---~~~Ea~ 176 (434)
.||||||+|.+|..++..|.+.-+....| ++|+ |.++...+..+ .+. ..++.. ... +.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 47999999999999999997651101112 4443 33333222111 111 123210 023 777776
Q ss_pred -ccCCEEEEeecch----HHHHHHHHHHhcCCCCcEEEE
Q 013877 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 177 -~~ADiViLavpd~----a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.+.|+|+.|+|.. .+.+++.+ .|+.|+-|+.
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvt 119 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVT 119 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEE
T ss_pred CCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEe
Confidence 3689999999985 44445443 3556776653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.35 Score=48.42 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~AD 180 (434)
.| .+|.|+|.|.+|...++-++.. |. +|+ ..+.+++..+.+++.|.... +....+..+.+. ..|
T Consensus 213 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 213 PG-DNVVILGGGPIGLAAVAILKHA------GASKVI-LSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 45 8999999999999999988888 98 665 44444566788888886421 111123333332 589
Q ss_pred EEEEeecch--HHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDA--AQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~--a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++... .....++-+...++++-.++..
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 999999876 2223333333444777666544
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.34 Score=47.80 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=59.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++. ..+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-CCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999988887 87 66544 444556788888886420 1000 12333332 57
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC-cEEEE
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g-~iL~~ 210 (434)
|+||-++... +.++.....++++ -.++.
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEE
Confidence 9999998752 2344555677776 55543
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.21 Score=50.51 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~~~~~~~~~E 174 (434)
.|+| .||++||=| +++.|++..+..- |.+|.+..... ....+ .|++.| +.. +.+++|
T Consensus 173 ~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 241 (359)
T 2w37_A 173 KLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLDE 241 (359)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 5788 999999986 9999999999887 99887765431 12222 233566 332 568999
Q ss_pred hhccCCEEEEeec
Q 013877 175 TISGSDLVLLLIS 187 (434)
Q Consensus 175 a~~~ADiViLavp 187 (434)
++++||+|+..+=
T Consensus 242 av~~aDvvytd~w 254 (359)
T 2w37_A 242 GLKGSNVVYTDVW 254 (359)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhcCCCEEEEccc
Confidence 9999999998553
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.15 Score=48.42 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=53.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH---HHHcCccccCCCcCC---HHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~---A~~~G~~~~~~~~~~---~~Ea~~~ADiViL 184 (434)
++|.|+|. |.+|.++++.|.+. |++|++..|..+...+. ....|+....+.+.+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 58999995 99999999999998 99888777764322221 123454321111333 4567889999999
Q ss_pred eecch---HHHHHHHHH
Q 013877 185 LISDA---AQADNYEKI 198 (434)
Q Consensus 185 avpd~---a~~~vl~eI 198 (434)
+.... .+..+++..
T Consensus 86 ~a~~~~~~~~~~l~~aa 102 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAI 102 (318)
T ss_dssp CCCGGGSTTHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHH
Confidence 98753 234455443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.14 Score=46.02 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=47.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC----HHhhhccCCEEEEee
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~----~~Ea~~~ADiViLav 186 (434)
|||.|+| .|.+|.++++.|.+. |++|++..|..++.... .++......+.+ +.+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 4899999 899999999999998 99988877764432111 222111111333 456778899999998
Q ss_pred cch
Q 013877 187 SDA 189 (434)
Q Consensus 187 pd~ 189 (434)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 754
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.28 Score=46.55 Aligned_cols=75 Identities=21% Similarity=0.161 Sum_probs=48.5
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH------cCcc---ccCCC-cCCHHh
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFT---EENGT-LGDIYE 174 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~------~G~~---~~~~~-~~~~~E 174 (434)
..+++ ++|.|.|. |-+|.++++.|.+. |++|++..|...+....... .++. ..|-+ ..++.+
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 45677 99999997 99999999999998 99988777753322111111 1221 11100 123456
Q ss_pred hhccCCEEEEeec
Q 013877 175 TISGSDLVLLLIS 187 (434)
Q Consensus 175 a~~~ADiViLavp 187 (434)
++++.|+||.+..
T Consensus 80 ~~~~~d~vih~A~ 92 (342)
T 1y1p_A 80 VIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 6778999998864
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.092 Score=55.02 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=56.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC--HHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~--~~Ea~~~ADiViLavpd~ 189 (434)
++|.|||+|..|..+|+.|.+. |++|++.+....+ .+.+. -+...|.+-.+ .+.-+++||.+++++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~-~~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESP-VCNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCS-SCCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHH-HhhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999998 9988776654333 22221 22222222122 123478999999999987
Q ss_pred HHHHHHHHHHhcCCCC-cEEE
Q 013877 190 AQADNYEKIFSCMKPN-SILG 209 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g-~iL~ 209 (434)
...-+.-.++..+.+. .+|.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEE
Confidence 5443333444555555 4444
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.058 Score=53.87 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=51.7
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
.||||||+|.+|..+++.|.+. +...|.+++++...+.+.. ++ .++.. .....|.++++ +.|+|+.|+|.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence 4799999999999999999775 1111113444333332211 11 12211 11135677777 89999999997
Q ss_pred hHH-HHHHHHHHhcCCCCcEEEE
Q 013877 189 AAQ-ADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 189 ~a~-~~vl~eI~~~Lk~g~iL~~ 210 (434)
..+ .+...+ .|+.|+-|+.
T Consensus 77 ~~~a~~~~~~---AL~aGKhVVt 96 (332)
T 2ejw_A 77 VEAPLRLVLP---ALEAGIPLIT 96 (332)
T ss_dssp SHHHHHHHHH---HHHTTCCEEE
T ss_pred cHHHHHHHHH---HHHcCCeEEE
Confidence 644 344433 3456665543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.28 Score=43.83 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=46.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC-HHhhhccCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~~Ea~~~ADiViLavpd 188 (434)
|||.|+|. |.+|.++++.|.+. |++|++..|...+ .......++......+.+ ..+++++.|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 57999997 99999999999999 9998877775332 222222333211000111 11678899999998854
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.17 Score=47.50 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=52.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC-c-----hhHHH---HHHcCccccCCCcCC---HHhhhcc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~-----~s~~~---A~~~G~~~~~~~~~~---~~Ea~~~ 178 (434)
++|.|+|. |.+|.++++.|.+. |++|++..|.. . ...+. ....|+......+.+ +.+++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 88999996 99999999999998 99888777764 1 11111 123454321111233 4567889
Q ss_pred CCEEEEeecch---HHHHHHHHH
Q 013877 179 SDLVLLLISDA---AQADNYEKI 198 (434)
Q Consensus 179 ADiViLavpd~---a~~~vl~eI 198 (434)
+|+||.+.... .+..+++..
T Consensus 77 ~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 77 VDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp CSEEEECSSSSCGGGHHHHHHHH
T ss_pred CCEEEECCcccccccHHHHHHHH
Confidence 99999998753 334455443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.13 Score=50.31 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccc-cCCCcCCHHhhhc------cCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~~~Ea~~------~AD 180 (434)
.| ++|.|+|.|.+|.+.++-++.. |. +|++..+. ++..+.+++.|... .+....+..+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 67 8999999999999999999888 88 77655544 45567777877631 0111123333332 589
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++... +.++...+.++++..++..
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEE
Confidence 999999852 2334444556666555543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.42 Score=47.13 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=59.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +... .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDI-NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcC-CHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 46 8999999999999999988887 88 6655444 4555788888886420 1000 12333332 48
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC-cEEEE
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g-~iL~~ 210 (434)
|+||-++... +.++.....++++ -.++.
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEE
Confidence 9999998752 2344555677776 55543
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.065 Score=53.88 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=54.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-----c-EEEEEecCC--chhHHHH----HH-cCccccCCCcCCHHhhhc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-----I-VVKVGLRKG--SRSFAEA----RA-AGFTEENGTLGDIYETIS 177 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-----~-~Vivg~r~~--~~s~~~A----~~-~G~~~~~~~~~~~~Ea~~ 177 (434)
+||+||| .|.+|..+.+.|.+. + . +++...+.. .+..... .. ...... ..+. +.+.
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~~ 79 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVLG 79 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHhc
Confidence 7999999 999999999999876 5 3 544433221 1211110 00 011110 1232 4456
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|+||+|+|.....++.+.+ +.|..+++.++
T Consensus 80 ~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa 111 (352)
T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQL----SPETLIIDCGA 111 (352)
T ss_dssp TCSEEEECCTTSCCHHHHHHS----CTTSEEEECSS
T ss_pred CCCEEEECCCCcchHHHHHHH----hCCCEEEEECC
Confidence 899999999988777666544 46777776655
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.19 Score=49.62 Aligned_cols=71 Identities=23% Similarity=0.180 Sum_probs=41.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--cC-c--cccCCCc-CCHHhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTL-GDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--~G-~--~~~~~~~-~~~~Ea~~~ADiViL 184 (434)
+||+||| .|.+|.+++..|.... +...++.+.+.. .+....+.+ +. . .. .+.. .+..+++++||+||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~-~~~~G~a~Dl~~~~~~~~v-~~~~~~~~~~~~~~aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIA-PVTPGVAVDLSHIPTAVKI-KGFSGEDATPALEGADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSS-TTHHHHHHHHHTSCSSEEE-EEECSSCCHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecC-CCchhHHHHhhCCCCCceE-EEecCCCcHHHhCCCCEEEE
Confidence 5899999 8999999999987530 012355444443 222222222 11 1 11 0000 245678999999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+..
T Consensus 76 ~ag 78 (312)
T 3hhp_A 76 SAG 78 (312)
T ss_dssp CCS
T ss_pred eCC
Confidence 873
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.15 Score=50.56 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~~~~~~~~~E 174 (434)
.|+| .||++||=| ++..|++..+..- |.+|.+...++ ..-.+ .|++.| +.. ..+++|
T Consensus 145 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 213 (307)
T 2i6u_A 145 ALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAHA 213 (307)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 5788 999999986 9999999999887 99887765432 11222 233566 332 568999
Q ss_pred hhccCCEEEEee
Q 013877 175 TISGSDLVLLLI 186 (434)
Q Consensus 175 a~~~ADiViLav 186 (434)
++++||+|+..+
T Consensus 214 av~~aDvvy~~~ 225 (307)
T 2i6u_A 214 AAAGADVLVTDT 225 (307)
T ss_dssp HHTTCSEEEECC
T ss_pred HhcCCCEEEecc
Confidence 999999999854
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.15 Score=50.97 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHH----HHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.|+| .||++||=| ++..|++..+..- |.+|.+...++ ....+ .|++.|.... ...+++|++
T Consensus 164 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 234 (325)
T 1vlv_A 164 RLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEAL 234 (325)
T ss_dssp CSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHH
T ss_pred CcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHH
Confidence 5788 999999986 9999999999887 99887765432 12222 3336673210 156899999
Q ss_pred ccCCEEEEeec
Q 013877 177 SGSDLVLLLIS 187 (434)
Q Consensus 177 ~~ADiViLavp 187 (434)
++||+|+..+=
T Consensus 235 ~~aDvvyt~~w 245 (325)
T 1vlv_A 235 AGADVVYTDVW 245 (325)
T ss_dssp TTCSEEEECCC
T ss_pred ccCCEEEeccc
Confidence 99999998543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.43 Score=47.06 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| ++|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +... .+..+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDL-NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-CHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 46 8999999999999999988887 88 6654444 4556778888886320 1000 12333333 47
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC-cEEEE
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g-~iL~~ 210 (434)
|+||-++... +.++.....++++ -.++.
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEE
Confidence 9999998753 2344555677776 55543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.38 Score=46.60 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
..| ++|.|+|.|.+|...++-++.. |..+++..+.+++..+.+++.|.... +....+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 356 8999999999999999988888 87665555555666789999996421 11112333332 2468
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+-++.... .++.....++++..+++.
T Consensus 232 ~v~d~~G~~~---~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 232 LILETAGVPQ---TVELAVEIAGPHAQLALV 259 (346)
T ss_dssp EEEECSCSHH---HHHHHHHHCCTTCEEEEC
T ss_pred cccccccccc---hhhhhhheecCCeEEEEE
Confidence 8888886432 334444567777766544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.22 Score=43.64 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=46.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEeec
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLavp 187 (434)
|+|.|+|. |.+|.++++.|.+. |++|++..|...+... ....++......+.+ +.++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999997 99999999999998 9998877775432211 001222110111223 4467888999999876
Q ss_pred c
Q 013877 188 D 188 (434)
Q Consensus 188 d 188 (434)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.16 Score=50.30 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=58.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |++.|||-+ ..|..+|.-|.+. +..|.+.... ..++.+.+++||+||.+
T Consensus 176 ~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~A 229 (303)
T 4b4u_A 176 EIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVGA 229 (303)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEEC
T ss_pred CCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEec
Confidence 6889 999999977 6799999999887 8787765432 24677889999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+.-... +. ..++|+|++|+++ |++
T Consensus 230 ~G~p~~---i~--~d~vk~GavVIDV-Gin 253 (303)
T 4b4u_A 230 VGKAEL---IQ--KDWIKQGAVVVDA-GFH 253 (303)
T ss_dssp SCSTTC---BC--GGGSCTTCEEEEC-CCB
T ss_pred cCCCCc---cc--cccccCCCEEEEe-cee
Confidence 874322 21 3468999999886 443
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.17 Score=52.41 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=48.5
Q ss_pred CCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+.+++|.|||+|-.|.+ +|+-|.+. |++|.+.+...+...+..++.|+....+ .+. +.++.+|+||+.
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFN--HRP-ENVRDASVVVVS 85 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESS--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 34489999999999997 99999998 9998876665444344555678764222 122 446789998884
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.097 Score=51.70 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=61.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhh----ccCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~----~~AD 180 (434)
.++| ++|.|+|.|.+|...++-++.. |.+|++..+... +..+.+++.|....+ .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 3558 9999999999999999999988 988877666540 345777777865311 11 222222 3589
Q ss_pred EEEEeecchHHHHHH-HHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl-~eI~~~Lk~g~iL~~s 211 (434)
+||-++.... .+ +...+.|+++..++..
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEE
Confidence 9999988542 23 4555667776555433
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.42 E-value=0.23 Score=49.63 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CchhHHHHH----HcCc-----cc--cC------C---C-
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAGF-----TE--EN------G---T- 168 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~--~~~s~~~A~----~~G~-----~~--~~------~---~- 168 (434)
.||||+|+|.+|.-+++.|.+. .+++++..++. +........ ..|- .. .+ + .
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4899999999999999998765 14566544442 222222221 1121 00 00 0 0
Q ss_pred c--CCHHhh---hccCCEEEEeecchHHHHHHHHHHhcCCCCc--EEEEe
Q 013877 169 L--GDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLS 211 (434)
Q Consensus 169 ~--~~~~Ea---~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~--iL~~s 211 (434)
. .+++++ -.++|+||.|+|.....+..... ++.|. +|+..
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~---l~aGak~VVIs~ 125 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH---LKGGAKKVVISA 125 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESS
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHH---HHcCCCEEEEec
Confidence 1 144443 14799999999998888776554 34565 55543
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.27 Score=48.74 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred ccC-CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHH----HHcCccccCCCcCCHHhhh
Q 013877 107 AFN-GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~-g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~~~~~~~~~Ea~ 176 (434)
.|+ | .||++||= +++..|++..+..- |.+|.+...++ ....+.+ ++.|.... ...+++|++
T Consensus 142 ~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav 212 (307)
T 3tpf_A 142 MQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEAL 212 (307)
T ss_dssp CGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHH
T ss_pred CCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 477 8 99999995 58889999888877 88887664332 2222333 35554210 156899999
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
+++|+|+..+
T Consensus 213 ~~aDvvyt~~ 222 (307)
T 3tpf_A 213 KDKDVVITDT 222 (307)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEecC
Confidence 9999999877
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.22 Score=47.25 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC-c----hhHHH---HHHcCccccCCCcCC---HHhhhcc
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~----~s~~~---A~~~G~~~~~~~~~~---~~Ea~~~ 178 (434)
+++|.|+|. |.+|.++++.|.+. |++|++..|.. + ...+. ....|+......+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence 378999995 99999999999998 99888777764 1 11111 123454221111333 4567889
Q ss_pred CCEEEEeecch---HHHHHHHHH
Q 013877 179 SDLVLLLISDA---AQADNYEKI 198 (434)
Q Consensus 179 ADiViLavpd~---a~~~vl~eI 198 (434)
+|+||.+.... .+..+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAI 100 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCCccchhhHHHHHHHH
Confidence 99999998753 334555543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.11 Score=50.92 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|.... ..+.++..+..|+||-++..
T Consensus 176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFARN-EHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSS-STTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence 56 8999999999999999999888 9887655544 455788888887531 22333333478999999986
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 189 AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.. .++.....|+++-.++..
T Consensus 245 ~~---~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 HY---DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp CC---CHHHHHTTEEEEEEEEEC
T ss_pred HH---HHHHHHHHHhcCCEEEEE
Confidence 52 233444567777666544
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.37 E-value=0.41 Score=47.17 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| ++|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDI-NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcC-CHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 46 8999999999999999988888 88 6655444 3555778888886420 1000 12333333 47
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC-cEEEE
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g-~iL~~ 210 (434)
|+||-++.... .++.....++++ -.++.
T Consensus 263 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 263 DFSFEVIGRLD---TMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp SEEEECSCCHH---HHHHHHHHBCTTTCEEEE
T ss_pred cEEEECCCCHH---HHHHHHHHhhcCCcEEEE
Confidence 99999997532 344445567776 55543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.19 Score=48.50 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=53.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHH------HHHcCccccCCCcCC---HHhhhc--cC
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE------ARAAGFTEENGTLGD---IYETIS--GS 179 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~------A~~~G~~~~~~~~~~---~~Ea~~--~A 179 (434)
++|.|+|. |.+|.++++.|.+. |++|++..|..+....+ ....|+....+.+.+ +.++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999998 99999999999998 99988877764221111 123454321122333 456778 99
Q ss_pred CEEEEeecchHH---HHHHHHH
Q 013877 180 DLVLLLISDAAQ---ADNYEKI 198 (434)
Q Consensus 180 DiViLavpd~a~---~~vl~eI 198 (434)
|+||.+...... ..+++..
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa 106 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAM 106 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHH
T ss_pred CEEEECCchhhHHHHHHHHHHH
Confidence 999999886432 3455443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.21 Score=49.48 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhcc--------
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-------- 178 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~~-------- 178 (434)
.| .+|.|+|.|.+|...++-++.. |. +|+ ..+.+++..+.+++.|.... +....+..+.+.+
T Consensus 182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 182 AG-STVAILGGGVIGLLTVQLARLA------GATTVI-LSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 46 8999999999999999988888 88 655 44444566788888887421 1112344444443
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.|+||-++.... .++.....++++..++..
T Consensus 254 ~Dvvid~~G~~~---~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 254 VDVVIECAGVAE---TVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCCHH---HHHHHHHHhccCCEEEEE
Confidence 799999988432 334444556666665544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.27 Score=48.50 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhh-hccCC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYET-ISGSD 180 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea-~~~AD 180 (434)
..-.| ++|..||||..|.+...-.+.. |.+| ++.+.++...+.|++. |.....-...+..+. -...|
T Consensus 119 ~l~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V-~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FD 190 (298)
T 3fpf_A 119 RFRRG-ERAVFIGGGPLPLTGILLSHVY------GMRV-NVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFD 190 (298)
T ss_dssp TCCTT-CEEEEECCCSSCHHHHHHHHTT------CCEE-EEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCS
T ss_pred CCCCc-CEEEEECCCccHHHHHHHHHcc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcC
Confidence 33456 8999999998765433222223 6665 5677666666666653 431000001233332 14579
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|++..-.....++++++...||||..|+
T Consensus 191 vV~~~a~~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 191 VLMVAALAEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp EEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred EEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence 99987654455678999999999998765
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.27 Score=48.26 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=30.5
Q ss_pred CccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 013877 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (434)
Q Consensus 98 ~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r 148 (434)
+|.+..+.+.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD~ 68 (292)
T 3h8v_A 24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFDY 68 (292)
T ss_dssp --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECC
T ss_pred ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 3444334467888 9999999999999999999998 76 5555443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.44 Score=46.85 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCc--CCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~Ea~~-----~A 179 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +... .+..+.++ ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDI-NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECS-CGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcC-CHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 46 8999999999999999988888 88 6654443 3555778888886420 1000 12333333 47
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC-cEEEE
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g-~iL~~ 210 (434)
|+||-++... +.++.....++++ -.++.
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEE
Confidence 9999998753 2344555677776 55543
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.11 Score=51.57 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=47.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccCCE
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
.|+| .||++||= +++..|++..+..- |.+|.+...++ .... +++.|.... ...+++|+++++|+
T Consensus 151 ~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~--~~~~g~~v~--~~~d~~eav~~aDv 219 (309)
T 4f2g_A 151 PIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLV--DAESAPFYQ--VFDDPNEACKGADL 219 (309)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGS--CGGGGGGEE--ECSSHHHHTTTCSE
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHH--HHHcCCeEE--EEcCHHHHhcCCCE
Confidence 5788 99999995 58899999888887 88877654321 1111 223333210 15689999999999
Q ss_pred EEEee
Q 013877 182 VLLLI 186 (434)
Q Consensus 182 ViLav 186 (434)
|+..+
T Consensus 220 vyt~~ 224 (309)
T 4f2g_A 220 VTTDV 224 (309)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99854
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.42 Score=47.89 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=42.6
Q ss_pred cccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCC--cEEEEEecCCchh--HHHHH--Hc-CccccC--CCcCCHH
Q 013877 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEAR--AA-GFTEEN--GTLGDIY 173 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G--~~Vivg~r~~~~s--~~~A~--~~-G~~~~~--~~~~~~~ 173 (434)
++..... -||+|||. |.+|.+++..|... +=.+.+ .++.+.+...... .-.+. .+ .+.... ....+..
T Consensus 18 ~~~s~~~-vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~ 95 (345)
T 4h7p_A 18 GPGSMSA-VKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPR 95 (345)
T ss_dssp ----CCC-EEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHH
T ss_pred CCCCCCC-CEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChH
Confidence 3444455 69999996 99999999988875 000111 1444443322111 11111 11 111000 0134678
Q ss_pred hhhccCCEEEEee
Q 013877 174 ETISGSDLVLLLI 186 (434)
Q Consensus 174 Ea~~~ADiViLav 186 (434)
+++++||+||++-
T Consensus 96 ~a~~~advVvi~a 108 (345)
T 4h7p_A 96 VAFDGVAIAIMCG 108 (345)
T ss_dssp HHTTTCSEEEECC
T ss_pred HHhCCCCEEEECC
Confidence 8999999999974
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.36 Score=47.80 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCC--cCCHHhhhc-----cC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~--~~~~~Ea~~-----~A 179 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++. +.++...+.+++.|.... +.. ..+..+.++ ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRIIGI-DIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEEEE-CSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 46 8999999999999999999888 88 66554 433455788888887420 100 123333333 48
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC-cEEEEe
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g-~iL~~s 211 (434)
|+||-++... +.++.....+++| -.++..
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEE
Confidence 9999998863 2344555677874 555433
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.19 Score=49.52 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc-----cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-----~ADi 181 (434)
.| ++|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +....+..+.+. ..|+
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDI-VESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEES-CHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECC-CHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 45 8999999999999999988887 87 5554444 4555778888886310 111123333332 4799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||-++... +.++.....|+++-.++..
T Consensus 262 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 262 ALESTGSP---EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEEC
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEe
Confidence 99998753 2344555667776655543
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.24 Score=49.33 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHH----HHcC--ccccCCCcCCHHhh
Q 013877 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYET 175 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~~~~~~~Ea 175 (434)
.|+| .||++||=|+ +..|++..+..- |.+|.+....+ ....+.+ ++.| +.. ..+++|+
T Consensus 152 ~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ea 220 (321)
T 1oth_A 152 SLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLEA 220 (321)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHHH
Confidence 5788 9999999864 777777666665 88887765432 1222322 2445 332 5689999
Q ss_pred hccCCEEEEee
Q 013877 176 ISGSDLVLLLI 186 (434)
Q Consensus 176 ~~~ADiViLav 186 (434)
++++|+|+..+
T Consensus 221 v~~aDvvy~d~ 231 (321)
T 1oth_A 221 AHGGNVLITDT 231 (321)
T ss_dssp HTTCSEEEECC
T ss_pred hccCCEEEEec
Confidence 99999999955
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.23 Score=49.55 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHH----HHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~----A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|+| .||++||= +++..+++..+..- |.+|.+.... +....+. +.+.|.... ...+++|+++
T Consensus 154 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~eav~ 224 (323)
T 3gd5_A 154 RLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQ--ILRDPFEAAR 224 (323)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHT
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EECCHHHHhc
Confidence 4788 99999995 58899999988777 9888776433 2222232 334453210 1568999999
Q ss_pred cCCEEEEee
Q 013877 178 GSDLVLLLI 186 (434)
Q Consensus 178 ~ADiViLav 186 (434)
+||+|+..+
T Consensus 225 ~aDvvyt~~ 233 (323)
T 3gd5_A 225 GAHILYTDV 233 (323)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEec
Confidence 999998775
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.098 Score=47.08 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=47.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEee
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLav 186 (434)
|++|.|+| .|.+|.++++.|.+. |++|++..|..++..... .++......+.+ ..+++++.|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 48999999 599999999999999 999887777643321110 222111111223 456788999999997
Q ss_pred cch
Q 013877 187 SDA 189 (434)
Q Consensus 187 pd~ 189 (434)
.+.
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.28 Score=47.68 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc----cCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~----~ADiVi 183 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|.... +....+..+.+. ..|+||
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 166 PG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDID-DAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 56 8999999999999999999888 9887655544 455778888886320 111123334333 579999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++... +.++.....|+++..++..
T Consensus 238 d~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 238 VTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 987643 2344455566776665543
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.81 E-value=0.17 Score=51.04 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CchhHHHHH---HcCccccCCCcCCHHhhhccCCEEEE
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~--~~~s~~~A~---~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
|.|||||| .|..|.-+.+-|.+. + ..++...... ..+.....- ......+ ..+.++...++|+||+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P----~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 47999998 699999999988876 1 2344332221 122222110 0112210 1245555578999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|.....++.++ + .|..|++.++
T Consensus 85 alp~~~s~~~~~~----~-~g~~VIDlSs 108 (351)
T 1vkn_A 85 ALPAGASYDLVRE----L-KGVKIIDLGA 108 (351)
T ss_dssp CCSTTHHHHHHTT----C-CSCEEEESSS
T ss_pred CCCcHHHHHHHHH----h-CCCEEEECCh
Confidence 9998887766544 4 6888888776
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.36 Score=45.42 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=48.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhH-HHHHHcCccccCCCcCC---HHhhhccCCEEEEe
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLa 185 (434)
|+|.|+|. |.+|.++++.|.+. | ++|++..|...+.. +.....|+....+.+.+ +.++++++|+||.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999997 99999999999998 8 89887777644321 22223454321111333 45678899999998
Q ss_pred ecc
Q 013877 186 ISD 188 (434)
Q Consensus 186 vpd 188 (434)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 763
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.54 Score=45.94 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCc-CC-HH---hhh-----c
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IY---ETI-----S 177 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~-~~---Ea~-----~ 177 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|.... +... .+ .+ +.. .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTAR-SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEcC-CHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 56 8999999999999999988887 888654444 3555678888886310 1110 12 11 222 2
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
..|+||-++.... .++.....|+++..++..
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5899999997642 334445567777665543
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.25 Score=49.67 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHH----HHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~----A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|+| .||++||= +++..+++..+..- |.+|.+...+ ++...+. |++.|.... ...+++|+++
T Consensus 176 ~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~--~~~d~~eav~ 246 (340)
T 4ep1_A 176 TFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIE--ILHNPELAVN 246 (340)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEE--EESCHHHHHT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EECCHHHHhC
Confidence 4788 99999996 47889999888877 9888776433 2222222 335663210 1568999999
Q ss_pred cCCEEEEee
Q 013877 178 GSDLVLLLI 186 (434)
Q Consensus 178 ~ADiViLav 186 (434)
+||+|+..+
T Consensus 247 ~aDVvyt~~ 255 (340)
T 4ep1_A 247 EADFIYTDV 255 (340)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999865
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.27 Score=43.66 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=58.8
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..+. ....+.+++.|.... +-...+..+.+ ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 46 8999999 699999999999988 8888766554 334556666664210 11111222222 1479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+||.++.. +.++...+.|+++..++...
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECS
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEc
Confidence 99988864 34555566777776665443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.25 Score=46.49 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch----hHHH---HHHcCccccCCCcCC---HHhhhccC
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGS 179 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~----s~~~---A~~~G~~~~~~~~~~---~~Ea~~~A 179 (434)
+++|.|+| .|.+|.++++.|.+. |++|++..|..+. ..+. ....|+....+.+.+ +.++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 77 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 77 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCC
Confidence 37899999 499999999999998 9988777775321 1111 112354321111333 45678899
Q ss_pred CEEEEeecch
Q 013877 180 DLVLLLISDA 189 (434)
Q Consensus 180 DiViLavpd~ 189 (434)
|+||.+....
T Consensus 78 d~vi~~a~~~ 87 (313)
T 1qyd_A 78 DVVISALAGG 87 (313)
T ss_dssp SEEEECCCCS
T ss_pred CEEEECCccc
Confidence 9999988643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.13 Score=51.49 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCH-Hhhhc------cCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~------~AD 180 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++..+. .+..+.+++.|...-+-...+. .+.+. ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGDQN-PERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEESC-HHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 46 8999999999999999988887 88 77655544 4556788888863211111222 33222 579
Q ss_pred EEEEeecchH-----------HHHHHHHHHhcCCCCcEEEE
Q 013877 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 181 iViLavpd~a-----------~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+||-++.... ....+++....++++-.++.
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 9999998542 01245555566777666553
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.36 Score=46.33 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH---H-------cCccccCCCcCC---H
Q 013877 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---A-------AGFTEENGTLGD---I 172 (434)
Q Consensus 107 ~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~---~-------~G~~~~~~~~~~---~ 172 (434)
.+++ ++|.|.| .|-+|.++++.|.+. |++|++..|.......... . .++....+.+.+ .
T Consensus 22 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (351)
T 3ruf_A 22 IFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC 94 (351)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred CCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 4566 9999999 599999999999999 9998877775433222221 1 233211111233 4
Q ss_pred HhhhccCCEEEEeec
Q 013877 173 YETISGSDLVLLLIS 187 (434)
Q Consensus 173 ~Ea~~~ADiViLavp 187 (434)
.+++++.|+||.+..
T Consensus 95 ~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 95 EQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHHTTTCSEEEECCC
T ss_pred HHHhcCCCEEEECCc
Confidence 567789999998875
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=92.59 E-value=0.17 Score=50.23 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=53.3
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
.|+| .||++||=| ++..|++..+..- |.+|.+...+ +....+.+++.|.... ...+++|++++|
T Consensus 152 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (308)
T 1ml4_A 152 RIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKL 222 (308)
T ss_dssp CSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTC
T ss_pred CCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 5788 999999984 8999999998877 9888776543 2234456666675320 146899999999
Q ss_pred CEEEEeec
Q 013877 180 DLVLLLIS 187 (434)
Q Consensus 180 DiViLavp 187 (434)
|+|+...=
T Consensus 223 Dvvyt~~~ 230 (308)
T 1ml4_A 223 DVLYVTRI 230 (308)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998663
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.21 Score=49.70 Aligned_cols=95 Identities=25% Similarity=0.307 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCC-HHhhhc------cCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~~Ea~~------~AD 180 (434)
.| .+|.|+|.|.+|...++-++.. |. .|++. +.++...+.+++.|...-+....+ ..+.++ ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~-~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVG-DLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEE-ESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEE-cCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCC
Confidence 56 8999999999999999988887 87 55544 444556788888887421111111 233222 479
Q ss_pred EEEEeecchH------------HHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAA------------QADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a------------~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++.... ....+++....++++-.++..
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 9999987542 012455555667776655543
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.49 Score=48.81 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=56.4
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcCCHHhhhccC
Q 013877 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~Ea~~~A 179 (434)
|+.. -.++| ++|.|||.|..|.+-++.|.+. |.+|+|.........+...+ .++....+. .+ .+-+.++
T Consensus 4 ~P~~-~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~-~~-~~~l~~~ 73 (457)
T 1pjq_A 4 LPIF-CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSC 73 (457)
T ss_dssp EEEE-ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTC
T ss_pred eeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECC-CC-ccccCCc
Confidence 3444 45788 9999999999999999999999 99888776543332222222 233221111 12 2346789
Q ss_pred CEEEEeecchHH-HHHHHH
Q 013877 180 DLVLLLISDAAQ-ADNYEK 197 (434)
Q Consensus 180 DiViLavpd~a~-~~vl~e 197 (434)
|+||.++.+... ..++..
T Consensus 74 ~lVi~at~~~~~n~~i~~~ 92 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDA 92 (457)
T ss_dssp SEEEECCSCHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHH
Confidence 999999887754 345443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=92.53 E-value=0.49 Score=46.42 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCC---cCCHHhhh-----cc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~---~~~~~Ea~-----~~ 178 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++..+. +...+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLS-ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 46 8999999999999999988887 88 76655443 455678888886320 100 00111122 35
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.|+||-++.... .++.....|+++..++..
T Consensus 243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 899999997542 334445567777665543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.17 Score=49.98 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~ADi 181 (434)
.| ++|.|+|.|.+|.+.++-++.. |.+|++..+. .+..+.+++.|.... +....+..+.+. ..|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSSS-REKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEecC-chhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 45 8999999999999999999888 9887765554 445677888886420 111123333322 5899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||-++....... ....++++..++..
T Consensus 261 vid~~g~~~~~~----~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 261 ILEIAGGAGLGQ----SLKAVAPDGRISVI 286 (363)
T ss_dssp EEEETTSSCHHH----HHHHEEEEEEEEEE
T ss_pred EEECCChHHHHH----HHHHhhcCCEEEEE
Confidence 999998554433 34456666555544
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=92.42 E-value=0.57 Score=41.59 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCchhHHHHHH----cCc---cccCCCcCCHHh---hh
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA----AGF---TEENGTLGDIYE---TI 176 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G--~~Vivg~r~~~~s~~~A~~----~G~---~~~~~~~~~~~E---a~ 176 (434)
.+ .+|.-||+|. | .++..|.+. + .+| ++.+.++...+.|++ .|+ ... ..+..+ ..
T Consensus 40 ~~-~~vLDiG~G~-G-~~~~~la~~------~~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~ 106 (204)
T 3e05_A 40 DD-LVMWDIGAGS-A-SVSIEASNL------MPNGRI-FALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDL 106 (204)
T ss_dssp TT-CEEEEETCTT-C-HHHHHHHHH------CTTSEE-EEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTS
T ss_pred CC-CEEEEECCCC-C-HHHHHHHHH------CCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcC
Confidence 45 8999999997 3 344455554 3 455 566665655555554 232 110 122222 22
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
...|+|++..+......+++++...|+||..+++.
T Consensus 107 ~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 56899999887767778999999999999877644
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.16 Score=49.31 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=46.6
Q ss_pred ccccccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC-C---HHhh
Q 013877 101 FNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-D---IYET 175 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~-~---~~Ea 175 (434)
++.+...+++ ++|.|+| .|.+|..+++.|.+. .|++|++..|..++........++....+.+. + +.++
T Consensus 15 ~~~~~~~m~~-~~vlVtGatG~iG~~l~~~L~~~-----~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~ 88 (372)
T 3slg_A 15 QTQGPGSMKA-KKVLILGVNGFIGHHLSKRILET-----TDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH 88 (372)
T ss_dssp --------CC-CEEEEESCSSHHHHHHHHHHHHH-----SSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH
T ss_pred hhcCCcccCC-CEEEEECCCChHHHHHHHHHHhC-----CCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH
Confidence 5566666777 9999999 699999999999875 16788877776443222221123321111122 2 4457
Q ss_pred hccCCEEEEee
Q 013877 176 ISGSDLVLLLI 186 (434)
Q Consensus 176 ~~~ADiViLav 186 (434)
++++|+||.+.
T Consensus 89 ~~~~d~Vih~A 99 (372)
T 3slg_A 89 VKKCDVILPLV 99 (372)
T ss_dssp HHHCSEEEECB
T ss_pred hccCCEEEEcC
Confidence 78999999754
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.37 Score=49.71 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=63.7
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC--ccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G----------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~E 174 (434)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..-.. +.....| +.. +.+.+|
T Consensus 315 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~~~~~----~~~~~~ 381 (450)
T 3gg2_A 315 NVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAMK--EAQKRLGDKVEY----TTDMYD 381 (450)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCHH--HHHHHHGGGSEE----CSSHHH
T ss_pred cCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCcH--HHHHhcCcccee----cCCHHH
Confidence 4688 999999984 4467888888888 9998766543211 1112233 332 457889
Q ss_pred hhccCCEEEEeecchHHHH-HHHHHHhcCCCCcEEEEeccc
Q 013877 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~-vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+++++|.|+++|.-....+ -++.+...|+ +.+|++.-++
T Consensus 382 ~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 382 AVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 9999999999998776643 2455666665 4577776553
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.68 Score=47.81 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=64.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-ccccCCCcCC----HHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGD----IYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~----~~Ea~~~ADiViLav 186 (434)
++|.|+|.|++|..+|+.|.+ +++|.+-.+...+....|.+.- ..+.+|...+ .++-+.++|+++.+|
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 799999999999999999854 5677777665555556666542 2211222233 235688999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.++..-=+..-++..+...+++....-.
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~vn~~ 336 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLIQRG 336 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred cCcHHHHHHHHHHHHcCCcccccccccc
Confidence 9876544444566667666777766543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.28 Score=47.94 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh------ccCCE
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~------~~ADi 181 (434)
.| ++|.|+| .|.+|.+.++-++.. |.+|++. +. ....+.+++.|...-+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 46 8999999 799999999999988 9887665 44 4456778888865312 122333333 25899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
||-++... .+......|+++-.++...
T Consensus 220 vid~~g~~----~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 220 VYDTLGGP----VLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEESSCTH----HHHHHHHHEEEEEEEEESC
T ss_pred EEECCCcH----HHHHHHHHHhcCCeEEEEc
Confidence 99998864 3444445566666555443
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.35 Score=50.70 Aligned_cols=75 Identities=21% Similarity=0.085 Sum_probs=49.3
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.-+|++ ++|-|||.|-.|.+ +|+-|++. |++|.+.+.... ...+..++.|+....| .+.++...++|+|
T Consensus 14 ~~~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~v 84 (524)
T 3hn7_A 14 NLYFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLV 84 (524)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEE
T ss_pred ceeecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEE
Confidence 357788 99999999999996 78888888 999987776532 3344556678764211 2334444679999
Q ss_pred EEe--ecc
Q 013877 183 LLL--ISD 188 (434)
Q Consensus 183 iLa--vpd 188 (434)
|+. +|+
T Consensus 85 V~Spgi~~ 92 (524)
T 3hn7_A 85 VVGNAMKR 92 (524)
T ss_dssp EECTTCCT
T ss_pred EECCCcCC
Confidence 984 554
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=92.07 E-value=0.32 Score=49.36 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC------chhHH----HHHHcCccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~------~~s~~----~A~~~G~~~~~~~~~~~~E 174 (434)
.|+| .||++||=+ +++.|++..+..- |.+|.+...+. +...+ .+.+.|.... .+.+++|
T Consensus 177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e 247 (365)
T 4amu_A 177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL 247 (365)
T ss_dssp SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence 4788 999999988 7888998888877 98887664321 12222 2344563210 1568999
Q ss_pred hhccCCEEEEe
Q 013877 175 TISGSDLVLLL 185 (434)
Q Consensus 175 a~~~ADiViLa 185 (434)
++++||+|+.-
T Consensus 248 av~~aDVVytd 258 (365)
T 4amu_A 248 AAQDADVIYTD 258 (365)
T ss_dssp HTTTCSEEEEC
T ss_pred HhcCCCEEEec
Confidence 99999999984
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.15 Score=50.20 Aligned_cols=69 Identities=13% Similarity=-0.012 Sum_probs=51.0
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.|+| .||++||= +++..|++..+..- |.+|.+...++-.... ..+.|+.. ..+++|++++||+|+
T Consensus 143 ~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvvy 210 (291)
T 3d6n_B 143 EVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVVI 210 (291)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEEE
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEEE
Confidence 5788 99999997 89999999999888 9988776443211001 12456554 578999999999999
Q ss_pred Eeecc
Q 013877 184 LLISD 188 (434)
Q Consensus 184 Lavpd 188 (434)
. +-.
T Consensus 211 ~-~~~ 214 (291)
T 3d6n_B 211 W-LRL 214 (291)
T ss_dssp E-CCC
T ss_pred E-eCc
Confidence 8 554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.77 Score=43.77 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----Ccccc-CCCcCCHHhhhccCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYETISGSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~Ea~~~ADiVi 183 (434)
.+ .+|.-||||. |. ++..|.+.. |.+| ++.+.++...+.|++. |.... .-...+..+.-...|+|+
T Consensus 90 ~~-~~vLDiGcG~-G~-~~~~la~~~-----~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~ 160 (318)
T 2fk8_A 90 PG-MTLLDIGCGW-GT-TMRRAVERF-----DVNV-IGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIV 160 (318)
T ss_dssp TT-CEEEEESCTT-SH-HHHHHHHHH-----CCEE-EEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEE
T ss_pred Cc-CEEEEEcccc-hH-HHHHHHHHC-----CCEE-EEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEE
Confidence 46 8999999998 33 333343321 5565 5666656555555542 32100 000234444335689999
Q ss_pred Ee-----ecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 184 LL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 184 La-----vpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
.. +++.....+++++...|+||..+++
T Consensus 161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 87 6666677899999999999987654
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.35 Score=48.35 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCch------hHHHHH----H--cCccccCCCcCCH
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEAR----A--AGFTEENGTLGDI 172 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~------s~~~A~----~--~G~~~~~~~~~~~ 172 (434)
.|+| .||++||=+ ++..|++..+..- |.+|.+...++-. ..+.++ + .|.... ...++
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~--~~~d~ 228 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIK--IFHDC 228 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEE--EESSH
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEE--EEcCH
Confidence 5888 999999976 8889999888887 9888776443211 223333 3 453210 15689
Q ss_pred HhhhccCCEEEEe
Q 013877 173 YETISGSDLVLLL 185 (434)
Q Consensus 173 ~Ea~~~ADiViLa 185 (434)
+|+++++|+|+.-
T Consensus 229 ~eav~~aDvvytd 241 (328)
T 3grf_A 229 KKGCEGVDVVYTD 241 (328)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHhcCCCEEEec
Confidence 9999999999863
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.16 Score=53.29 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=34.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (434)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~ 408 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIG 408 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTT
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcC
Confidence 3567 8999999999999999999998 9888888887555555554443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.33 Score=47.27 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh----ccCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~----~~ADiVi 183 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... +-...+..+.+ ...|+||
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 46 8999999999999999999988 9887655544 455677778786320 11112333333 4689999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
-++.... .++...+.|+++..++.
T Consensus 236 d~~g~~~---~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 236 VTAVSKP---AFQSAYNSIRRGGACVL 259 (339)
T ss_dssp ESSCCHH---HHHHHHHHEEEEEEEEE
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEE
Confidence 9988522 33444455666655543
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.36 Score=46.96 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=52.9
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc
Q 013877 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 99 ~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
+.|....+..+| +||++||+ | +.+.+.+ .. +.++.|.++... .|..+ ....++++++
T Consensus 130 d~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~ 186 (270)
T 2h1q_A 130 DPFIMSQNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILPE 186 (270)
T ss_dssp CHHHHTTTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGG
T ss_pred cHHHHHHhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhhc
Confidence 456555567788 99999999 4 6666644 45 678888877643 24332 2346678999
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCC
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPN 205 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g 205 (434)
||+|++. --...-..++.|..+.++.
T Consensus 187 aD~viiT-GsTlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 187 CDYVYIT-CASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp CSEEEEE-THHHHHTCHHHHHHHTTTS
T ss_pred CCEEEEE-eeeeecCCHHHHHHhCccC
Confidence 9998865 3333334555555555544
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.51 Score=45.47 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh---HHHHH-------HcCccccCCCcCC---H
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-------AAGFTEENGTLGD---I 172 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s---~~~A~-------~~G~~~~~~~~~~---~ 172 (434)
.+++ ++|.|.|. |-+|.++++.|.+. |++|++..|..... .+... ..++......+.+ +
T Consensus 24 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 96 (352)
T 1sb8_A 24 PAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 96 (352)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHH
Confidence 3566 89999997 99999999999998 99988777754321 11111 1233211111233 4
Q ss_pred HhhhccCCEEEEeec
Q 013877 173 YETISGSDLVLLLIS 187 (434)
Q Consensus 173 ~Ea~~~ADiViLavp 187 (434)
.+++++.|+||.+..
T Consensus 97 ~~~~~~~d~vih~A~ 111 (352)
T 1sb8_A 97 NNACAGVDYVLHQAA 111 (352)
T ss_dssp HHHHTTCSEEEECCS
T ss_pred HHHhcCCCEEEECCc
Confidence 467789999999865
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.56 Score=47.47 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH---------------
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI--------------- 172 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~--------------- 172 (434)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. ....+.+++.|... +.+.
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVSS-AQKEAAVRALGCDL----VINRAELGITDDIADDPRR 287 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCC----EEEHHHHTCCTTGGGCHHH
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCE----EEecccccccccccccccc
Confidence 45 89999998 99999999999988 9887766654 45567788888642 1111
Q ss_pred --------Hhh----h-ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 173 --------YET----I-SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 173 --------~Ea----~-~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.+. . ...|+||-++... .++.....++++-.++..
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHTGRV----TFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECSCHH----HHHHHHHHSCTTCEEEES
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECCCch----HHHHHHHHHhcCCEEEEE
Confidence 111 1 2589999998863 344555667777666544
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.16 Score=50.60 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=44.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-hhHHHHHHcCccccCCCcCC---HHhhhccCCEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiV 182 (434)
.+.| +||+|||.|..|..+++.+++. |++|++.+.... .....+ +.... ....+ +.+.++++|+|
T Consensus 11 ~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvI 79 (389)
T 3q2o_A 11 ILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDVV 79 (389)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCEe
Confidence 4577 9999999999999999999998 999877654321 111111 11111 01223 55677889988
Q ss_pred EEe
Q 013877 183 LLL 185 (434)
Q Consensus 183 iLa 185 (434)
...
T Consensus 80 ~~~ 82 (389)
T 3q2o_A 80 TYE 82 (389)
T ss_dssp EES
T ss_pred eec
Confidence 543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=1.1 Score=45.57 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=41.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-----EEEEEecCCchh----HHHHH--HcCcccc--C-CCcCCHHhhh
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFTEE--N-GTLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~-----~Vivg~r~~~~s----~~~A~--~~G~~~~--~-~~~~~~~Ea~ 176 (434)
.||+||| .|.+|.+++..|... ++ .+.+.+..-... .-.+. .++..+. + ....+..+++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7999999 799999999999876 44 144433211221 12222 2222100 0 0023567889
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999974
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.29 Score=49.40 Aligned_cols=91 Identities=13% Similarity=0.110 Sum_probs=51.5
Q ss_pred CCEEEEEc-ccchHHHHHHH-HHhhhhhhcCCc---EEEEE-ecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 111 INQIGVIG-WGSQGPAQAQN-LRDSLAEAKSDI---VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~n-Lrds~~~~~~G~---~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
|+||||+| .|.+|.-+.+. |.+. ++ .+... .++..+.............+ ..+.++ .+++|+||.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~--~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQD--AFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCEE--TTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEEe--cCChHH-hcCCCEEEE
Confidence 57999999 99999999994 4433 33 33222 22111111000001111100 113333 578999999
Q ss_pred eecchHHHHHHHHHHhcCCCCc--EEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~--iL~~s~G 213 (434)
|+|.....+..+.+.. .|. +|++.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9998888877776543 454 6666654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.51 Score=46.04 Aligned_cols=92 Identities=17% Similarity=0.057 Sum_probs=60.8
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-cCCHHhhhc-----cCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~Ea~~-----~AD 180 (434)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..+... ..+.+++.|.... |-. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~~-~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGEG-KEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSTT-HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCHH-HHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 46 89999999 89999999999988 988877665543 4567777775310 101 123444443 479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||.++... ..++...+.|+++..|+..
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEEC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 999888742 3455566677776555433
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.42 Score=46.68 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=60.4
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-----cCCEE
Q 013877 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDLV 182 (434)
Q Consensus 109 ~g~kkIgII-G~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-----~ADiV 182 (434)
.| ++|.|+ |.|.+|.+.++-++.. |.+|++..+ +++..+.+++.|....-....+..+.++ ..|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTAS-RNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECC-SHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 67 999999 7999999999999988 988765554 3455778888886421001123333332 47999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
|-++.... .++.....|+++-.++...
T Consensus 222 ~d~~g~~~---~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 222 FCTFNTDM---YYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp EESSCHHH---HHHHHHHHEEEEEEEEESS
T ss_pred EECCCchH---HHHHHHHHhccCCEEEEEC
Confidence 99887533 3334445566666555443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.54 E-value=0.18 Score=48.20 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCc-CCHHhhhccCCEEEEe
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~~~Ea~~~ADiViLa 185 (434)
.| ++|.|+|. |.+|...++-++.. |.+|++..++ ++..+.+++.|.... +... .+..+.+...|+||-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 46 89999998 99999999999888 8887766654 344567777776420 0000 112233467899998
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+... .++.....++++..++..
T Consensus 196 ~g~~----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 VRGK----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp CSCT----THHHHHTTEEEEEEEEEC
T ss_pred CCHH----HHHHHHHhhccCCEEEEE
Confidence 7763 345555667776655533
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.24 Score=51.91 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=51.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCchhHHHHHHcCccccCCC--cCCH----HhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGT--LGDI----YETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~--~~~~----~Ea~~~ADiV 182 (434)
+||.|||+|.||..++..|.++. ++ +|++.+..... .+.....|+....-. ..+. ..++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~-----dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKF-----DIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHB-----CCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCC-----CCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 57999999999999999998761 33 56666543222 233333454321111 1222 3456667999
Q ss_pred EEeecchHHHHHHHHH
Q 013877 183 LLLISDAAQADNYEKI 198 (434)
Q Consensus 183 iLavpd~a~~~vl~eI 198 (434)
|.+.++.....+++..
T Consensus 88 IN~s~~~~~l~Im~ac 103 (480)
T 2ph5_A 88 IDVSIGISSLALIILC 103 (480)
T ss_dssp EECCSSSCHHHHHHHH
T ss_pred EECCccccCHHHHHHH
Confidence 9999888777777643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.3 Score=47.36 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
.| ++|.|+| .|.+|.+.++-++.. |.+|++..++ .+..+.+++.|.... +....+..+.+ ...|
T Consensus 148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAST-DEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 56 8999999 899999999999988 9988766654 445678888886320 11112333322 2479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+-++.... ++...+.|+++..++..
T Consensus 220 ~vid~~g~~~----~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 220 ASFDSVGKDT----FEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEEECCGGGG----HHHHHHHEEEEEEEEEC
T ss_pred EEEECCChHH----HHHHHHHhccCCEEEEE
Confidence 9999998643 44444566676665544
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.38 Score=49.72 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=65.9
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-c-CccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G----------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~-G~~~~~~~~~~~~E 174 (434)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..- .+.++. . ++.. +.+.+|
T Consensus 319 ~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~---~~~~~~~~~~~~~----~~~~~~ 384 (446)
T 4a7p_A 319 DVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEG---VEQASKMLTDVEF----VENPYA 384 (446)
T ss_dssp CCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSC---HHHHGGGCSSCCB----CSCHHH
T ss_pred cCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCC---CHhHHHhcCCceE----ecChhH
Confidence 4688 999999997 7788999999998 99887665432 223322 2 4432 457889
Q ss_pred hhccCCEEEEeecchHHHH-HHHHHHhcCCCCcEEEEeccc
Q 013877 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~-vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+++++|+|+++|.-....+ -++.+...|+. .+|++.-++
T Consensus 385 ~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~ 424 (446)
T 4a7p_A 385 AADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNI 424 (446)
T ss_dssp HHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCC
T ss_pred HhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCC
Confidence 9999999999998766543 24566676754 567766553
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.32 Score=47.10 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH-HHcCcccc-CCCcCCHHhhhc-----cCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETIS-----GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-~~~~~~~~Ea~~-----~AD 180 (434)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..++ ....+.+ ++.|.... +....+..+.+. ..|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 46 89999999 99999999999988 9988766655 3345556 67776320 111123333332 479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
+||-++.. +.+....+.++++..++...
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence 99998875 35566667787777665443
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.26 Score=48.13 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=59.7
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~AD 180 (434)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. .+..+.+++.|.... +.. .+..+.+. ..|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 46 89999998 99999999999988 9988766654 445677888776421 111 23333332 489
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++... .+......++++..++..
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 999998864 344455667776655543
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.21 Score=48.92 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
||||+|||-|..|..+++.+++. |+++++.+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~ 32 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDK 32 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 79999999999999999999998 998876654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.47 Score=47.72 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=53.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-cC-CchhHHHHH-----------HcCccccCCCcCCHHhhhc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEAR-----------AAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~-r~-~~~s~~~A~-----------~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|||||| .|..|.-+.+-|.+. + .+++.... ++ ..+.....- ....... ..+. +.+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~---~~~~-~~~~ 78 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK---PTDP-KLMD 78 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE---ECCG-GGCT
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE---eCCH-HHhc
Confidence 5899999 699999999977654 1 23443222 22 122232210 0011110 1122 3457
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|+||+|+|.....++.+.+. +.|..+++.++
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpk_A 79 DVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred CCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 8999999999988887777653 46777776665
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.47 Score=47.72 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=53.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-cC-CchhHHHHH-----------HcCccccCCCcCCHHhhhc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEAR-----------AAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~-r~-~~~s~~~A~-----------~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|||||| .|..|.-+.+-|.+. + .+++.... ++ ..+.....- ....... ..+. +.+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~---~~~~-~~~~ 78 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK---PTDP-KLMD 78 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE---ECCG-GGCT
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE---eCCH-HHhc
Confidence 5899999 699999999977654 1 23443222 22 122232210 0011110 1122 3457
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
++|+||+|+|.....++.+.+. +.|..+++.++
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpl_A 79 DVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred CCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 8999999999988887777653 46777776665
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.21 Score=48.87 Aligned_cols=92 Identities=25% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~AD 180 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +....+..+.+. ..|
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 166 LG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFA-VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEE-ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEE-ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 46 8999999999999999988887 87 6655 4444555788888887420 111123333322 489
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++.... .++.....|+++..++..
T Consensus 238 ~v~d~~g~~~---~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 238 KVVIAGGDVH---TFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHhcCCEEEEe
Confidence 9999988632 233344456666655543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.43 Score=46.38 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cCC
Q 013877 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~AD 180 (434)
.| ++|.|+|.| .+|.+.++-++.. |.+|++..++. +..+.+++.|.... +....+..+.+. ..|
T Consensus 144 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 144 RN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRNN-KHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCc
Confidence 56 899999998 8999999999888 98887666554 45677888776420 111123333322 579
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++......+.+ ..|+++..++..
T Consensus 216 vvid~~g~~~~~~~~----~~l~~~G~iv~~ 242 (340)
T 3gms_A 216 AAIDSIGGPDGNELA----FSLRPNGHFLTI 242 (340)
T ss_dssp EEEESSCHHHHHHHH----HTEEEEEEEEEC
T ss_pred EEEECCCChhHHHHH----HHhcCCCEEEEE
Confidence 999998865543333 567776665544
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=91.33 E-value=0.52 Score=44.23 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.3
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
.|+| |++-|-|.+ -+|.++|+.|.+. |.+|++..|+..
T Consensus 3 ~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 3 NLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKER 43 (256)
T ss_dssp CCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGG
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 4788 999999975 3999999999999 999988887643
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.085 Score=49.43 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=45.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhcc-CCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISG-SDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~-ADiViLavp 187 (434)
++|.|+|.|.+|..+++.|.+. |++|++..|..++. ..++......+.+ +.++++. .|+||.+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 7999999999999999999999 99988777764431 1222110111222 3455666 999998875
Q ss_pred c
Q 013877 188 D 188 (434)
Q Consensus 188 d 188 (434)
.
T Consensus 73 ~ 73 (286)
T 3gpi_A 73 A 73 (286)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.35 Score=47.81 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=47.0
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.|+| .||++||=| ++..|++..+..- |.+|.+...++-.. +. ...|. ..+++|++++||+|+
T Consensus 144 ~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~~-~~~g~------~~d~~eav~~aDvvy 208 (304)
T 3r7f_A 144 TFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-EE-NTFGT------YVSMDEAVESSDVVM 208 (304)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-TT-CSSCE------ECCHHHHHHHCSEEE
T ss_pred CCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-ch-hhcCc------cCCHHHHhCCCCEEE
Confidence 5788 999999975 5999999999887 99887654332111 10 12232 468999999999998
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
...
T Consensus 209 t~~ 211 (304)
T 3r7f_A 209 LLR 211 (304)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.49 Score=46.64 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=60.8
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc-----cCCE
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-----~ADi 181 (434)
.| ++|.|+| .|.+|...++-++.. |.+|++..+. ....+.+++.|.... +....+..+.++ ..|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 46 8999999 799999999999988 9887665554 445677777776320 111123333332 4799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
||-++... .++...+.|+++..++...
T Consensus 235 vid~~g~~----~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 235 VYESVGGA----MFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEECSCTH----HHHHHHHHEEEEEEEEECC
T ss_pred EEECCCHH----HHHHHHHHHhcCCEEEEEe
Confidence 99999863 4445556666665555443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.21 Score=49.45 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCcccc-CCCcCC---HHhhhccCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~~~~---~~Ea~~~ADiVi 183 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++..+... ..+.+. +.|.... + ..+ +.++....|+||
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~-~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTSPS-KKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGII 256 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGG-GHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEE
Confidence 57 8999999999999999999888 988776665543 455555 6775320 1 112 223334689999
Q ss_pred Eeecch-HHHHHHHHHHhcCCCCcEEE
Q 013877 184 LLISDA-AQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~g~iL~ 209 (434)
-++... .....+ +.|+++..++
T Consensus 257 d~~g~~~~~~~~~----~~l~~~G~iv 279 (366)
T 1yqd_A 257 DTVSAVHPLLPLF----GLLKSHGKLI 279 (366)
T ss_dssp ECCSSCCCSHHHH----HHEEEEEEEE
T ss_pred ECCCcHHHHHHHH----HHHhcCCEEE
Confidence 998854 333333 3455555444
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=91.20 E-value=0.2 Score=51.61 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrd-s~~~~~~G~~Vivg~r~ 149 (434)
++| ++|+|+|+|++|..+|+.|+. . |.+|+...+.
T Consensus 210 l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 210 LKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp STT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred cCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 889 999999999999999999988 7 9988755454
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.36 Score=46.63 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
.| ++|.|+| .|.+|.+.++-++.. |.+|++..+. ....+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSS-PEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 46 8999999 899999999999988 9888766654 445677777775310 11112333332 2579
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++... .+....+.++++..++..
T Consensus 212 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 212 VVYDGVGQD----TWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp EEEESSCGG----GHHHHHTTEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHHhcCCCEEEEE
Confidence 999988863 344555667777666544
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.38 Score=46.06 Aligned_cols=68 Identities=29% Similarity=0.235 Sum_probs=44.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCE
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADi 181 (434)
+..++ |+|.|.|. |-+|.++++.|.+. |++|++..|.... .++......+.+ ..+++++.|+
T Consensus 15 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (347)
T 4id9_A 15 VPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSA 80 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSE
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCE
Confidence 56677 99999997 99999999999999 9998877776433 222110111223 4567889999
Q ss_pred EEEeec
Q 013877 182 VLLLIS 187 (434)
Q Consensus 182 ViLavp 187 (434)
||.+..
T Consensus 81 vih~A~ 86 (347)
T 4id9_A 81 VLHLGA 86 (347)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998754
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=91.08 E-value=0.29 Score=47.65 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
-.++| ++|.|||.|..|..-++.|.+. |.+|+|...
T Consensus 9 ~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap 44 (274)
T 1kyq_A 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSP 44 (274)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEE
T ss_pred EEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcC
Confidence 35688 9999999999999999999998 988877654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.54 Score=45.38 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc-cCCCc-CCHHhhhc-----cCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTL-GDIYETIS-----GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~~~~-~~~~Ea~~-----~AD 180 (434)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..+. ....+.+++.|... .|-.. .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 46 89999998 99999999999988 9988766654 34456666767521 01111 23333332 479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||.++... .++.....++++..++..
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 217 CYFDNVGGE----FLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp EEEESSCHH----HHHHHHTTEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHHHhcCCEEEEE
Confidence 999888753 355556677777665544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.26 Score=46.72 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=44.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc--cCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++|.|.| .|.+|.++++.|.+. |++|++..|. ..... .. ++.. .|-+..+..++++++|+||.+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 7999999 699999999999999 9998877776 32222 21 3321 11111224567889999998864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.03 E-value=0.24 Score=48.73 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=59.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcC-CHHhhh-ccCCEEEEe
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~-~~~Ea~-~~ADiViLa 185 (434)
.| ++|.|+|.|.+|...++-++.. |.+|++..++ .+..+.+++.|.... +.... +..+.+ ...|+||-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 46 8999999999999999998888 9887665554 445677888886420 10011 222333 368999999
Q ss_pred ecc--hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISD--AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd--~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+.. .. .++...+.|+++..++..
T Consensus 251 ~g~~~~~---~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 251 ASSLTDI---DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CSCSTTC---CTTTGGGGEEEEEEEEEC
T ss_pred CCCCcHH---HHHHHHHHhcCCCEEEEe
Confidence 875 21 233445566676655433
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.51 Score=47.63 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=47.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHc--------CccccCCCcCCHHh
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA--------GFTEENGTLGDIYE 174 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~--------G~~~~~~~~~~~~E 174 (434)
|+| .||++||=+ ++..+++..+..- |.+|.+.... ++...+.+++. ++.. +.+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 588 999999976 6788888888776 9888776433 22223344332 2332 568999
Q ss_pred hhccCCEEEEee
Q 013877 175 TISGSDLVLLLI 186 (434)
Q Consensus 175 a~~~ADiViLav 186 (434)
++++||+|+.-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999998754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.29 Score=47.23 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=63.4
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc-cCCCcCC-HHhhhccCCEEEE
Q 013877 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD-IYETISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~-~~Ea~~~ADiViL 184 (434)
-.| .+|.|+| .|.+|...++-++.. |.+|++..+ .+..+.+++.|... -+....+ ..+.++..|+||-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~~--~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTAS--KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEEC--HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEec--cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 356 8999997 999999999999988 988765543 23477888888742 0111223 5566678999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++..... ......++++-.++..
T Consensus 222 ~~g~~~~----~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 222 LVGGDVG----IQSIDCLKETGCIVSV 244 (321)
T ss_dssp SSCHHHH----HHHGGGEEEEEEEEEC
T ss_pred CCCcHHH----HHHHHhccCCCEEEEe
Confidence 9986443 4455677777666544
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.57 Score=46.25 Aligned_cols=70 Identities=14% Similarity=0.046 Sum_probs=50.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.|+| .||++||= +++..|++..+..- |.+|.+...++-. ..+.....++.. ..+++|+++++|+|+.
T Consensus 151 ~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy~ 219 (301)
T 2ef0_A 151 GLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALYT 219 (301)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEEE
T ss_pred CcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEEe
Confidence 5788 99999997 79999999999887 9988776543211 111111123543 5789999999999998
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
.+=
T Consensus 220 ~~~ 222 (301)
T 2ef0_A 220 DVW 222 (301)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.69 Score=46.61 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=53.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec-C-CchhHHHHHH----cCc------------cccCC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARA----AGF------------TEENG 167 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r-~-~~~s~~~A~~----~G~------------~~~~~ 167 (434)
+....+.||||+|+|.+|+-+.+.|.+. ..++|+..++ . +........+ .|- .. ++
T Consensus 12 ~~~~~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v-~g 85 (354)
T 3cps_A 12 ENLYFQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCI-NG 85 (354)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEE-TT
T ss_pred cCcCcceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEE-CC
Confidence 3344446999999999999999988765 1456655444 2 2211112111 110 00 00
Q ss_pred C---c---CCHHhhh---ccCCEEEEeecchHHHHHHHHHHhcCCCCc--EEEEecc
Q 013877 168 T---L---GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (434)
Q Consensus 168 ~---~---~~~~Ea~---~~ADiViLavpd~a~~~vl~eI~~~Lk~g~--iL~~s~G 213 (434)
. + .++++.- .++|+||.|+|.....+..+ .+++.|. +|++.++
T Consensus 86 ~~i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 86 KVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp EEEEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred eEEEEEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 0 1 1333321 47899999999877765553 4566676 6665443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.76 E-value=0.24 Score=49.19 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC---HHhhhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~---~~Ea~~~ADiViL 184 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|.... + ..+ .+++....|+||-
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~~-~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEec--cccHHHHHHhhcCCCEEEE
Confidence 46 8999999999999999988887 8887655544 445677888886320 1 111 1222346899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.... .++...+.|+++..++..
T Consensus 264 ~~g~~~---~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 264 TVAAPH---NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CCSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred CCCCHH---HHHHHHHHhccCCEEEEe
Confidence 988532 233444566666555433
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.26 Score=48.92 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=53.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhc-CCcEEEEEecCCc--hhHHHHHHcCccccCCCcCCH-HhhhccCCEEEEee
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~-~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViLav 186 (434)
+||+|+| .|.+|.-+.+.|.+. + ..++++...+..+ +... -.|... .+.+. .+..+++|+||+|+
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a~ 73 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFSA 73 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEECC
Confidence 7899999 999999999988765 0 0235444332211 1100 001110 01111 12446899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|.....+..+.. ++.|..+++.++
T Consensus 74 g~~~s~~~a~~~---~~~G~~vId~s~ 97 (336)
T 2r00_A 74 GGELSAKWAPIA---AEAGVVVIDNTS 97 (336)
T ss_dssp CHHHHHHHHHHH---HHTTCEEEECSS
T ss_pred CchHHHHHHHHH---HHcCCEEEEcCC
Confidence 998877776654 345777776665
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.26 Score=47.28 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=50.4
Q ss_pred cccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-cCccccCCCcCC---HHhhhc-
Q 013877 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS- 177 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~---~~Ea~~- 177 (434)
.++.+++ |+|.|.|. |-+|.++++.|.+. |++|++..|......+.... .++......+.+ +.++++
T Consensus 14 ~~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 14 LVPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp CCSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 3678889 89999997 99999999999998 99988777743321110000 122110011233 445677
Q ss_pred -cCCEEEEeec
Q 013877 178 -GSDLVLLLIS 187 (434)
Q Consensus 178 -~ADiViLavp 187 (434)
+.|+||.+..
T Consensus 87 ~~~D~vih~A~ 97 (330)
T 2pzm_A 87 FKPTHVVHSAA 97 (330)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 8999999864
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=90.63 E-value=0.3 Score=44.28 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=47.8
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCc--cccCCC-cCCHHhhhccCCE
Q 013877 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGF--TEENGT-LGDIYETISGSDL 181 (434)
Q Consensus 108 ~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~--~~~~~~-~~~~~Ea~~~ADi 181 (434)
+++ |+|.|.| .|-+|.++++.|.+. |+ +|++..|...+..... ..++ ...|-+ ..++.+++++.|+
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 567 8999999 699999999999999 98 8887777643221111 1121 110100 1234567778999
Q ss_pred EEEeecc
Q 013877 182 VLLLISD 188 (434)
Q Consensus 182 ViLavpd 188 (434)
||.+...
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.44 Score=46.74 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=60.5
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc-----cCCE
Q 013877 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (434)
Q Consensus 109 ~g~kkIgII-G~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-----~ADi 181 (434)
.| ++|.|+ |.|.+|.+.++-++.. |.+|++..+. .+..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 45 899999 6899999999999988 9988766654 445677777776320 111123334333 4899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||-++.... +......|+++..++..
T Consensus 239 vid~~g~~~----~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 239 ILDMIGAAY----FERNIASLAKDGCLSII 264 (353)
T ss_dssp EEESCCGGG----HHHHHHTEEEEEEEEEC
T ss_pred EEECCCHHH----HHHHHHHhccCCEEEEE
Confidence 999998753 34445566666655544
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.53 Score=48.56 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEc-----cc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCc--cccCCC
Q 013877 107 AFNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGF--TEENGT 168 (434)
Q Consensus 107 ~~~g~kkIgIIG-----~G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~--~~~~~~ 168 (434)
.|+| .||+||| +| ++..+++..+..- |.+|.+....+ +...+. +.+.|. ..
T Consensus 185 ~l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~---- 253 (418)
T 2yfk_A 185 NLKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTK---- 253 (418)
T ss_dssp GGTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEE----
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEE----
Confidence 3789 9999997 34 3999999998877 99887765442 222232 334564 32
Q ss_pred cCCHHhhhccCCEEEEee
Q 013877 169 LGDIYETISGSDLVLLLI 186 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLav 186 (434)
+.+++|++++||+|+.-+
T Consensus 254 ~~d~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 254 TNSMAEAFKDADVVYPKS 271 (418)
T ss_dssp ESCHHHHHTTCSEEEECC
T ss_pred EcCHHHHhcCCCEEEEcc
Confidence 568999999999999864
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.61 Score=48.73 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=64.3
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G----------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~ 176 (434)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..-.. . .++.. ..+.++++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~~----~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVEI----SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBCE----ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcce----ecCHHHHH
Confidence 4688 999999973 3467888888888 9988776543221 0 11221 35788999
Q ss_pred ccCCEEEEeecchHHHH-HHHHHHhcCC-CCcEEEEeccc
Q 013877 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGF 214 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~-vl~eI~~~Lk-~g~iL~~s~G~ 214 (434)
++||+|+++|.-....+ -++.+...|+ +..+|++.-++
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~ 452 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNV 452 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSC
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCC
Confidence 99999999999777653 2456777777 36788887664
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=1.9 Score=42.54 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=60.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc-cCCCcCCHHhhhc-----cCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS-----GSD 180 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~~~Ea~~-----~AD 180 (434)
-.| .+|.|+|. |.+|...++-++.. |.+|++.. . ++..+.+++.|... -+....+..+.++ ..|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC-S-PHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe-C-HHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 467 89999999 89999999999888 98876543 3 45678899998742 0111123333332 389
Q ss_pred EEEEeecchHHHHHHHHHHhcC-CCCcEEEEec
Q 013877 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSH 212 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~L-k~g~iL~~s~ 212 (434)
+||-++..... ++.....| +++-.++...
T Consensus 234 ~v~d~~g~~~~---~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDCITNVES---TTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEESSCSHHH---HHHHHHHSCTTCEEEEESS
T ss_pred EEEECCCchHH---HHHHHHHhhcCCCEEEEEe
Confidence 99999986432 33334455 4665555443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=90.41 E-value=0.87 Score=46.86 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=64.9
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-------------Ccc
Q 013877 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GFT 163 (434)
Q Consensus 107 ~~~g~kkIgIIG~G----------~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------G~~ 163 (434)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..-.. .+..... ++.
T Consensus 326 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 397 (467)
T 2q3e_A 326 TVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLVT 397 (467)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHEE
T ss_pred ccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCcee
Confidence 4688 999999986 3677888888888 9988776543221 1111111 222
Q ss_pred ccCCCcCCHHhhhccCCEEEEeecchHHHHH-HHHHHhcCCCCcEEEEeccc
Q 013877 164 EENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 164 ~~~~~~~~~~Ea~~~ADiViLavpd~a~~~v-l~eI~~~Lk~g~iL~~s~G~ 214 (434)
. +.+..|++++||.|+++|.-.....+ ++.+...|+...+|.+.-++
T Consensus 398 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 445 (467)
T 2q3e_A 398 I----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRV 445 (467)
T ss_dssp E----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCT
T ss_pred e----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCc
Confidence 1 34778899999999999998776542 45677777765557776553
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.66 Score=47.14 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEE-E-ec-CCchhHHHHHHcCccc--------cCCCcC--CHHhhh
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKV-G-LR-KGSRSFAEARAAGFTE--------ENGTLG--DIYETI 176 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G-~~Viv-g-~r-~~~~s~~~A~~~G~~~--------~~~~~~--~~~Ea~ 176 (434)
.|||||| .|..|.-+.+-|.+. . .++.. . .+ ...+..... ..+.. .+-.+. +.++.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~--~~~~~~~~~p~~~~~~~v~~~~~~~~~ 91 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDA--ASWKQTETLPETEQDIVVQECKPEGNF 91 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHH--CCCCCSSCCCHHHHTCBCEESSSCTTG
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHh--cccccccccccccccceEEeCchhhhc
Confidence 5899999 699999999877654 3 35432 2 12 222333221 11100 000011 222146
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+++|+||+|+|.....++.+++. +.|..|++.++
T Consensus 92 ~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa 125 (381)
T 3hsk_A 92 LECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAK 125 (381)
T ss_dssp GGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCS
T ss_pred ccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCC
Confidence 78999999999988888877654 45777776665
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.97 Score=47.21 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=56.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc-CccccCCCcCCHH---h-hhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIY---E-TISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~---E-a~~~ADiViLav 186 (434)
+.|.|+|+|..|..+++.|.+. |++|++.+. +++..+.+.+. |+..-.+...+.+ + -+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid~-~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVTD-NYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEES-CHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 6799999999999999999988 888766554 45556667666 7643222223322 1 3678999998 5
Q ss_pred cchHHH-HHHHHHHhcCCCCcEEEEe
Q 013877 187 SDAAQA-DNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 187 pd~a~~-~vl~eI~~~Lk~g~iL~~s 211 (434)
+++... .+.. ....+..-.++.-+
T Consensus 200 ~~D~~n~~~~~-~ar~~~~~~iiar~ 224 (565)
T 4gx0_A 200 LSDPDNANLCL-TVRSLCQTPIIAVV 224 (565)
T ss_dssp SCHHHHHHHHH-HHHTTCCCCEEEEC
T ss_pred CCcHHHHHHHH-HHHHhcCceEEEEE
Confidence 544432 2222 33344433455433
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.23 E-value=1 Score=44.39 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHh-hhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-----cCCE
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrd-s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-----~ADi 181 (434)
.| .+|.|+| .|.+|...++-++. . |.+|++..+ +++..+.+++.|....-....+..+.+. ..|+
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~~~-~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIATAS-RPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAF 242 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEECS-SHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEEeC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceE
Confidence 56 8999999 99999999988886 5 777765444 4455778888886421001123333332 5799
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||-++... ..++.....++++..++..
T Consensus 243 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTTHTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEECSCHH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEECCCch---hhHHHHHHHhcCCCEEEEE
Confidence 99988754 2344445567777666544
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.32 Score=47.62 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=48.5
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHH-HcCccccCCCcCC---HHhhhccC
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~Ea~~~A 179 (434)
..+++ |+|.|.|. |.+|.++++.|.+. | ++|++..|......+... ..++....+.+.+ +.+++++.
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 34677 89999995 99999999999998 9 998776665332211110 1122110111233 34567789
Q ss_pred CEEEEeecc
Q 013877 180 DLVLLLISD 188 (434)
Q Consensus 180 DiViLavpd 188 (434)
|+||.+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999988653
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.54 Score=39.52 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=54.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
+++.|||.|..|..++..|++. .|++++...+.+..... ..-.|+.+. + ..++.+.++ +.|.|++++|..
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~-----~g~~vvg~~d~~~~~~g-~~i~g~pV~-g-~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQG-----KEFHPIAFIDDDRKKHK-TTMQGITIY-R-PKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEECSCGGGTT-CEETTEEEE-C-GGGHHHHHHHHTCCEEEECCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCcEEEEEEECCcccCC-CEecCeEEE-C-HHHHHHHHHHCCCCEEEEeCCCC
Confidence 7899999999999999999875 16777555554332110 001344431 1 234555554 578999999964
Q ss_pred HH---HHHHHHHHhcCCCCcEEEEeccc
Q 013877 190 AQ---ADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 190 a~---~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.. .+++..+. +.|..+.+...+
T Consensus 77 ~~~~~~~i~~~l~---~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQVQKKVIIESLA---KLHVEVLTIPNL 101 (141)
T ss_dssp CHHHHHHHHHHHH---TTTCEEEECCCH
T ss_pred CHHHHHHHHHHHH---HcCCeEEECCCH
Confidence 43 23443332 345556555544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.38 Score=44.67 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=32.8
Q ss_pred cccCCCCEEEEEcc-cc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 106 DAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
..++| |++.|.|. |. +|.++++.|.+. |.+|++..|...
T Consensus 18 ~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~~ 58 (266)
T 3o38_A 18 GLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHER 58 (266)
T ss_dssp STTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCHH
Confidence 34778 99999998 85 999999999999 999887777533
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.09 E-value=1.3 Score=45.63 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=45.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
|||.|.| .|.+|.++++.|.+. |++|++..|...+. ..+.. |- .....++++++|+||.+...
T Consensus 148 m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d~-~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 148 LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-DP-LNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-CT-TSCCTTTTTTCSEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-cc-cchhHHhcCCCCEEEECCCC
Confidence 8999999 699999999999999 99988777764431 11211 10 12345678899999987653
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.08 E-value=1.3 Score=42.04 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=44.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhH---HHHHHcC-ccccCCCcCC---HHhhhcc--C
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S 179 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~---~~A~~~G-~~~~~~~~~~---~~Ea~~~--A 179 (434)
||+|.|.| .|-+|.++++.|.+. |++|++..|.. .... +.....+ +......+.+ +.+++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 58999999 699999999999998 99987766532 1111 1111122 2110111223 3456777 9
Q ss_pred CEEEEeec
Q 013877 180 DLVLLLIS 187 (434)
Q Consensus 180 DiViLavp 187 (434)
|+||.+..
T Consensus 75 d~vih~A~ 82 (347)
T 1orr_A 75 DSCFHLAG 82 (347)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998865
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=90.06 E-value=0.68 Score=45.89 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=51.6
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHcCccccCCCcCCHHhhhcc
Q 013877 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
..|+| .||++||= +++..+++..+..- .|.+|.+...+ +....+.+++.|.... ...+++|++++
T Consensus 150 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (310)
T 3csu_A 150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE 221 (310)
T ss_dssp SCSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTT
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 35788 99999998 48999999888643 17787765432 2233456667775321 14689999999
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|+...
T Consensus 222 aDvvyt~~ 229 (310)
T 3csu_A 222 VDILYMTR 229 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99999865
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=1.3 Score=43.32 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=46.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH-HHHHH-cCccccCCC-cCC---HHhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA-AGFTEENGT-LGD---IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~-~~A~~-~G~~~~~~~-~~~---~~Ea~~~ADiViL 184 (434)
++|.|.| .|.+|.++++.|.+. |++|++..|+.++.. +.... .++....+. +.+ +.++++++|+||.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 7899999 599999999999988 998887777644321 11111 133211111 222 4567889999997
Q ss_pred eecc
Q 013877 185 LISD 188 (434)
Q Consensus 185 avpd 188 (434)
+...
T Consensus 80 ~a~~ 83 (352)
T 1xgk_A 80 NTTS 83 (352)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=1.5 Score=40.87 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc----cccCCCcCCHHhhhccC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF----TEENGTLGDIYETISGS 179 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~----~~~~~~~~~~~Ea~~~A 179 (434)
.+ .+|.-||||.-+. +..|. .. |.+| ++.+.++...+.+++. |. ... ..+..+.-...
T Consensus 64 ~~-~~vLDiGcG~G~~--~~~l~~~~------~~~v-~gvd~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~f 130 (287)
T 1kpg_A 64 PG-MTLLDVGCGWGAT--MMRAVEKY------DVNV-VGLTLSKNQANHVQQLVANSENLRSKRVL---LAGWEQFDEPV 130 (287)
T ss_dssp TT-CEEEEETCTTSHH--HHHHHHHH------CCEE-EEEESCHHHHHHHHHHHHTCCCCSCEEEE---ESCGGGCCCCC
T ss_pred Cc-CEEEEECCcccHH--HHHHHHHc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCe
Confidence 45 7999999998443 33343 44 6665 5666655555555542 22 110 23444433668
Q ss_pred CEEEEe-----ecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 180 DLVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 180 DiViLa-----vpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
|+|+.. +++.....+++++...||||..+++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 999876 4445567888999999999987654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=0.35 Score=47.17 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCc--hhHHHHHH--c---CccccCC-CcCCHHhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA--A---GFTEENG-TLGDIYET 175 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-------~Vivg~r~~~--~s~~~A~~--~---G~~~~~~-~~~~~~Ea 175 (434)
+||.|+|. |.+|.+++..|.+. |+ +|++.++... +....+.+ . .+.. +- ...+..++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~-di~~~~~~~~a 77 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA-GLEATDDPKVA 77 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE-EEEEESCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC-CeEeccChHHH
Confidence 68999996 99999999999887 75 6655444321 11111111 1 1110 00 01456788
Q ss_pred hccCCEEEEee
Q 013877 176 ISGSDLVLLLI 186 (434)
Q Consensus 176 ~~~ADiViLav 186 (434)
++++|+||.+.
T Consensus 78 ~~~~D~Vih~A 88 (327)
T 1y7t_A 78 FKDADYALLVG 88 (327)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 99999999874
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=1.4 Score=43.72 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=54.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------CchhHHH---HHHc-
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAE---ARAA- 160 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~-------------------~~~s~~~---A~~~- 160 (434)
...|++ .+|.|||+|..|..++++|..+ |+ ++.+.+.. ..+.... ..+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 467788 9999999999999999999998 87 55555321 0121111 1111
Q ss_pred -Ccccc--CCCc-CCHHhhhccCCEEEEeecchHHHHHHHHHH
Q 013877 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (434)
Q Consensus 161 -G~~~~--~~~~-~~~~Ea~~~ADiViLavpd~a~~~vl~eI~ 199 (434)
++... .... ....+.+++.|+||.++-+......+.+..
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~ 146 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC 146 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 11110 0001 123577889999999987766665665543
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.23 Score=49.39 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=51.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC--chhHHHHHHcCccccCCCcCCH-HhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG--SRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViL 184 (434)
+||+|+| .|.+|..+.+.|.++ ++ +++...+.. .+... -.|... .+.+. .+..+++|+||+
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~------~~~~~elv~i~s~~~~g~~~~---~~g~~i---~~~~~~~~~~~~~DvV~~ 74 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER------DFPLHRLHLLASAESAGQRMG---FAESSL---RVGDVDSFDFSSVGLAFF 74 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCCSCEEEEECTTTTTCEEE---ETTEEE---ECEEGGGCCGGGCSEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEEecCCCCCCccc---cCCcce---EEecCCHHHhcCCCEEEE
Confidence 6899999 899999999998855 33 443333211 11100 011110 01111 123578999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|.....+..+... +.|..+++.++
T Consensus 75 a~g~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 75 AAAAEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEETTC
T ss_pred cCCcHHHHHHHHHHH---HCCCEEEEeCC
Confidence 999887777766543 35666666554
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.63 Score=45.60 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.5
Q ss_pred cCCCCEEEEEcccchHHHH-HHHH-HhhhhhhcCCcE-EEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhhc----c
Q 013877 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS----G 178 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~-A~nL-rds~~~~~~G~~-Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~~----~ 178 (434)
+++ .+|.|+|.|.+|... ++-+ +.. |.+ |++..+..+ ...+.+++.|....+....+..+ +. .
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg 242 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQ 242 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCC
Confidence 345 899999999999999 8877 666 886 766555433 04678888887531111123333 32 4
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.|+||-++.... .++.....++++-.++..
T Consensus 243 ~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 243 MDFIYEATGFPK---HAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHHhcCCEEEEE
Confidence 799999988642 233444556666555533
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.84 Score=42.71 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhh--ccCCEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI--SGSDLV 182 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~--~~ADiV 182 (434)
.+ ++|.-||||.-. ++..+.+. |.+| ++.+.++...+.|++ .|... .-...+..+.+ ...|+|
T Consensus 120 ~~-~~VLDiGcG~G~--l~~~la~~------g~~v-~gvDi~~~~v~~a~~n~~~~~~~v-~~~~~d~~~~~~~~~fD~V 188 (254)
T 2nxc_A 120 PG-DKVLDLGTGSGV--LAIAAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPFGPFDLL 188 (254)
T ss_dssp TT-CEEEEETCTTSH--HHHHHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGGGCCEEEE
T ss_pred CC-CEEEEecCCCcH--HHHHHHHh------CCeE-EEEECCHHHHHHHHHHHHHcCCcE-EEEECChhhcCcCCCCCEE
Confidence 45 899999999933 44456666 6654 577766666665554 34210 00123554433 357999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+...+......+++++...|+||..++++
T Consensus 189 v~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 189 VANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 98777666678888899999999877654
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.74 Score=47.16 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=49.6
Q ss_pred cccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHH----HHHHcCccccCCCc
Q 013877 106 DAFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAGFTEENGTL 169 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-----G---~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~----~A~~~G~~~~~~~~ 169 (434)
+-++| +||+|||. | ++..|++..+..- |.+|.+...+ .+...+ .+.+.|.... .+
T Consensus 187 ~~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~ 257 (399)
T 3q98_A 187 ENLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QV 257 (399)
T ss_dssp GGGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EE
T ss_pred cccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EE
Confidence 34788 99999984 4 6889998888777 9888776543 222222 2345564210 15
Q ss_pred CCHHhhhccCCEEEEee
Q 013877 170 GDIYETISGSDLVLLLI 186 (434)
Q Consensus 170 ~~~~Ea~~~ADiViLav 186 (434)
.+++|++++||+|+.-+
T Consensus 258 ~d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 258 TSMEEAFKDADIVYPKS 274 (399)
T ss_dssp SCHHHHHTTCSEEEECC
T ss_pred cCHHHHhCCCCEEEecC
Confidence 78999999999998765
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=0.23 Score=50.68 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=47.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+++ |+|.|||.|-.|.+.|+-|.+. |++|++.+...... ..... .|+....+. ...+.++.+|+|++..
T Consensus 3 ~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 3 YQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVASP 72 (439)
T ss_dssp CTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEECT
T ss_pred CCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeCC
Confidence 567 8999999999999999999888 99987776543221 11122 466531111 1256677899999863
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.76 Score=44.65 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=58.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh----c--cCCE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI----S--GSDL 181 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~----~--~ADi 181 (434)
.| .+|.|+|.|.+|...++-++.. | .+|++..+ +++..+.+++.|....-....+..+.+ . ..|+
T Consensus 171 ~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 171 PG-STAVVIGVGGLGHVGIQILRAV------SAARVIAVDL-DDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATA 242 (345)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEES-CHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-CHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeE
Confidence 46 8999999999999988888765 4 46654444 455678888888742100011222222 1 6899
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||-++.... .++.....|+++-.++..
T Consensus 243 v~d~~G~~~---~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 243 VFDFVGAQS---TIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEESSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred EEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 999998753 333444556666655544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=89.48 E-value=2 Score=38.16 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc---CccccCCCcCCHHhhhccCCEEEEe
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.+ .+|.=||||.- .++..|.+. |.++ ++.+.++...+.+++. .+....+...+.... ...|+|+..
T Consensus 45 ~~-~~vLDiGcG~G--~~~~~l~~~------~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~ 113 (220)
T 3hnr_A 45 SF-GNVLEFGVGTG--NLTNKLLLA------GRTV-YGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVST 113 (220)
T ss_dssp CC-SEEEEECCTTS--HHHHHHHHT------TCEE-EEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEE
T ss_pred CC-CeEEEeCCCCC--HHHHHHHhC------CCeE-EEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEEC
Confidence 56 89999999984 345556666 6665 5777767666666654 222111111121111 678999986
Q ss_pred -----ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 -----ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 -----vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++.....+++++...|+||..+++.
T Consensus 114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cchhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34444445888999999999877654
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.47 E-value=1.1 Score=46.55 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=65.2
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh--HHHHHH-cC-------ccccC
Q 013877 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN 166 (434)
Q Consensus 107 ~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s--~~~A~~-~G-------~~~~~ 166 (434)
.++| ++|+|.|+ .+-...++..|.+. |.+|.+++..-... ...... .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 4688 99999997 35667788888887 88887665432211 112221 11 221
Q ss_pred CCcCCHHhhhccCCEEEEeecchHHHHH-HHHHHhcCCCCcEEEEeccc
Q 013877 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 167 ~~~~~~~Ea~~~ADiViLavpd~a~~~v-l~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.+..|+++++|.|+++|.-.....+ ++++...|+...+|.+.-++
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 449 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLI 449 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSC
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCC
Confidence 35678899999999999997776543 55677778776677777654
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=89.40 E-value=0.21 Score=49.71 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=29.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
+.+ ++|+|||.|..|..+++.+++. |++|++.+.
T Consensus 10 ~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~ 43 (377)
T 3orq_A 10 KFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDP 43 (377)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 455 9999999999999999999998 999877654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.34 E-value=0.57 Score=45.11 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=57.5
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ ....+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 46 8999999 799999999999988 9888766554 444566666665310 11111222222 1479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||.++... .++...+.|+++..++..
T Consensus 212 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 212 VVYDSVGRD----TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEEECSCGG----GHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchH----HHHHHHHHhcCCCEEEEE
Confidence 999998743 344445566666555433
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=1 Score=45.18 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~ 147 (434)
.+.+++ ++|.|||+|-.|.++|++|..+ |+ ++.+.+
T Consensus 29 ~~kL~~-~~VlIvGaGGlGs~va~~La~a------GVg~ItlvD 65 (340)
T 3rui_A 29 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVD 65 (340)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred HHHHhC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEec
Confidence 367888 9999999999999999999998 87 555543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=89.16 E-value=1.6 Score=39.31 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccc-cCCCcCCHHh---hhccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTE-ENGTLGDIYE---TISGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~-~~~~~~~~~E---a~~~AD 180 (434)
++ .+|.-||||. | .++..|.+. +.+| ++.+.++...+.|++ .|+.. ..-...+..+ .....|
T Consensus 55 ~~-~~vLDlGcG~-G-~~~~~la~~------~~~v-~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D 124 (204)
T 3njr_A 55 RG-ELLWDIGGGS-G-SVSVEWCLA------GGRA-ITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPE 124 (204)
T ss_dssp TT-CEEEEETCTT-C-HHHHHHHHT------TCEE-EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCS
T ss_pred CC-CEEEEecCCC-C-HHHHHHHHc------CCEE-EEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCC
Confidence 45 8999999998 3 344455555 5565 566666655555554 23320 0000223333 234689
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|++.... ... +++++...|+||..+++.
T Consensus 125 ~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 125 AVFIGGGG-SQA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp EEEECSCC-CHH-HHHHHHHHSCTTCEEEEE
T ss_pred EEEECCcc-cHH-HHHHHHHhcCCCcEEEEE
Confidence 99976533 233 888899999999876644
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=89.09 E-value=1.5 Score=37.44 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=54.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhh----ccCC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI----SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~----~~AD 180 (434)
.+ .+|.-||+|. | .++..+.+.. .+.+| ++.+.++...+.|++ .|....--...+..+.+ ...|
T Consensus 25 ~~-~~vldiG~G~-G-~~~~~l~~~~----~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 25 PH-ETLWDIGGGS-G-SIAIEWLRST----PQTTA-VCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPD 96 (178)
T ss_dssp TT-EEEEEESTTT-T-HHHHHHHTTS----SSEEE-EEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCS
T ss_pred CC-CeEEEeCCCC-C-HHHHHHHHHC----CCCeE-EEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCC
Confidence 45 7999999997 3 3444444431 03354 577776666666654 23320000012221222 5689
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|++.-+... ..+++++...|+||..+++.
T Consensus 97 ~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 97 VIFIGGGLTA-PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp EEEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred EEEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence 9997766544 66888899999999877644
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.08 E-value=1.7 Score=42.50 Aligned_cols=92 Identities=9% Similarity=-0.007 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCchhHHHHHHcCccccCCCc-----CCHHhhh------
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTL-----GDIYETI------ 176 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~-----~~~~Ea~------ 176 (434)
.| ++|.|+|.|.+|...++-++.. |.+ |++..+ +++..+.+++.+-...+... .+..+.+
T Consensus 179 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 179 LG-DPVLICGAGPIGLITMLCAKAA------GACPLVITDI-DEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEEES-CHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 56 8999999999999999988888 886 654444 34556677665311000000 1122222
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
...|+||-++.... .++.....|+++-.++..
T Consensus 251 ~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 251 IEPAVALECTGVES---SIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 25899999998642 334444567777666543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.04 E-value=1.8 Score=40.40 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=33.1
Q ss_pred ccccccccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 99 DLFNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 99 ~~f~~~~~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|..+.....++| |+|.|.| .|-+|.++++.|.+. |.+|++..|.
T Consensus 20 ~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~ 64 (272)
T 1yb1_A 20 GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDIN 64 (272)
T ss_dssp -----CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcC
Confidence 444444566888 9999998 568999999999998 9998877765
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.64 Score=46.64 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=48.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|+| .||++||= +++..|++..+..- |.+|.+...++ +...+. +.+.|.... .+.+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 5788 99999995 58889999888877 98887664332 222222 344563210 146788 999
Q ss_pred cCCEEEEee
Q 013877 178 GSDLVLLLI 186 (434)
Q Consensus 178 ~ADiViLav 186 (434)
+||+|+.-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999643
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=88.84 E-value=0.88 Score=45.42 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r 148 (434)
.+.+++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 113 q~~L~~-~~VlvvG~GglGs~va~~La~a------Gvg~i~lvD~ 150 (353)
T 3h5n_A 113 QDKLKN-AKVVILGCGGIGNHVSVILATS------GIGEIILIDN 150 (353)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHhC------CCCeEEEECC
Confidence 467888 9999999999999999999998 87 5555543
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=88.81 E-value=1.4 Score=41.94 Aligned_cols=134 Identities=14% Similarity=0.159 Sum_probs=76.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+|.+|+|+ |.||..+++.+.+. |++++...+.... .. + +++|+||=-+.|..
T Consensus 13 ~~~~v~Ga~GrMG~~i~~~~~~~------~~elv~~id~~~~----------~~----l-------~~~DVvIDFT~P~a 65 (228)
T 1vm6_A 13 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVNGV----------EE----L-------DSPDVVIDFSSPEA 65 (228)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETTEE----------EE----C-------SCCSEEEECSCGGG
T ss_pred ceeEEEEecCHHHHHHHHHHhCC------CCEEEEEEcCCCc----------cc----c-------cCCCEEEECCCHHH
Confidence 78899997 99999998866555 7877655554221 11 1 36899996666666
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhh------HHHHHhhcccccCCCceEEE
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS------VRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~------vr~ly~~G~~~~G~Gv~ali 263 (434)
..+.++....+ |. +|+=+.||+-...+.. ....+.+. +..+||.+--+ ++..-+.- .++-+-- +
T Consensus 66 ~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~l-~~~a~~~~-vv~apNfSlGvnll~~l~~~aA~~l---~~ydiEI-i 136 (228)
T 1vm6_A 66 LPKTVDLCKKY---RAGLVLGTTALKEEHLQML-RELSKEVP-VVQAYNFSIGINVLKRFLSELVKVL---EDWDVEI-V 136 (228)
T ss_dssp HHHHHHHHHHH---TCEEEECCCSCCHHHHHHH-HHHTTTSE-EEECSCCCHHHHHHHHHHHHHHHHT---TTSEEEE-E
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHH-HHHHhhCC-EEEeccccHHHHHHHHHHHHHHHhc---CCCCEEE-E
Confidence 66666544332 33 4444678864432110 11223444 45889998754 11111110 0122333 3
Q ss_pred eecC----C-CCHHHHHHHHHHH
Q 013877 264 AVHQ----D-VDGRATNVALGWS 281 (434)
Q Consensus 264 av~q----d-vsg~a~e~a~~la 281 (434)
-.|. | +||.|+.++..+-
T Consensus 137 E~HH~~K~DAPSGTAl~lae~i~ 159 (228)
T 1vm6_A 137 ETHHRFKKDAPSGTAILLESALG 159 (228)
T ss_dssp EEECTTCCCSSCHHHHHHHHHTT
T ss_pred EcCCCCCCCCCCHHHHHHHHhcc
Confidence 3343 3 4889888887773
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.42 Score=45.87 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++.. +++..+.+++.|.... ..+.+++-...|+||-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 56 8999999999999999999888 98876555 3456788888887531 22222222467999988875
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 013877 189 AAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
... ......++++-.++..
T Consensus 210 ~~~----~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 QNA----AALVPSLKANGHIICI 228 (315)
T ss_dssp --------TTGGGEEEEEEEEEE
T ss_pred hhH----HHHHHHhcCCCEEEEE
Confidence 433 3445667776655544
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.61 Score=48.60 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=39.7
Q ss_pred CEEEEEcccchHHH--HHHHHHhhhhhhcCCcEEEEEecCCchhHHH--------HHHcCccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPA--QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A--~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~--------A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|+.|.+ +...|....+=.+.+.+++. .+.++...+. +...|....=..+.|..|++++||+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L-~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~ 79 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYL-MDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADF 79 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEE-ECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEE-ECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCE
Confidence 58999999998855 33334332110111225544 4443322211 1223321100124688999999999
Q ss_pred EEEee
Q 013877 182 VLLLI 186 (434)
Q Consensus 182 ViLav 186 (434)
||+.+
T Consensus 80 Vi~~~ 84 (477)
T 3u95_A 80 IINTA 84 (477)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99986
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.73 Score=44.57 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=57.5
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. ....+.+++.|.... +-...+..+.+ ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVST-EEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 45 89999995 99999999999988 9888766654 334566666664310 11111222222 2479
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||.++... .++.....++++..++..
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 217 VVYDSIGKD----TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEECSCTT----THHHHHHTEEEEEEEEEC
T ss_pred EEEECCcHH----HHHHHHHhhccCCEEEEE
Confidence 999888763 344455566666555433
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=88.63 E-value=2 Score=42.06 Aligned_cols=89 Identities=9% Similarity=0.026 Sum_probs=59.4
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCch---hHHHHHHcCccccCCCcCC--------HHhhh
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGD--------IYETI 176 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~--------~~Ea~ 176 (434)
.| .+|.|+|. |.+|...++-++.. |.++++..+..++ ..+.+++.|... +.+ +.+..
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~----vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEH----VITEEELRRPEMKNFF 235 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSE----EEEHHHHHSGGGGGTT
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcE----EEecCcchHHHHHHHH
Confidence 46 89999998 99999999988887 8877666654332 346777888642 112 12222
Q ss_pred c---cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 177 S---GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 177 ~---~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
. ..|+||-++..... .+....++++..++...
T Consensus 236 ~~~~~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 236 KDMPQPRLALNCVGGKSS----TELLRQLARGGTMVTYG 270 (357)
T ss_dssp SSSCCCSEEEESSCHHHH----HHHHTTSCTTCEEEECC
T ss_pred hCCCCceEEEECCCcHHH----HHHHHhhCCCCEEEEEe
Confidence 2 37999999875443 23456788877666543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=0.68 Score=44.84 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCcccc-CCC-cCCHHhhhc-----cC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT-LGDIYETIS-----GS 179 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~-~~~~~Ea~~-----~A 179 (434)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.++ +.|.... |-. ..+..+.++ ..
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGS-KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 46 89999997 99999999999988 9887766554 34456665 5675310 101 113333332 47
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+||.++... .++.....++++..++..
T Consensus 227 d~vi~~~g~~----~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 227 DIYFENVGGK----MLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EEEEESSCHH----HHHHHHTTEEEEEEEEEC
T ss_pred cEEEECCCHH----HHHHHHHHHhcCCEEEEE
Confidence 9999998752 455666677777666544
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.57 E-value=1.2 Score=41.46 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=46.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLavp 187 (434)
|||.|+| .|.+|.++++.|.+. .|++|++..|+.++... ....++....+.+.+ +.++++++|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-----~g~~V~~~~R~~~~~~~-~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-----HIDHFHIGVRNVEKVPD-DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCTTEEEEESSGGGSCG-GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-----CCCcEEEEECCHHHHHH-hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5799999 599999999998864 16788777776443211 112333211111233 4567889999999876
Q ss_pred c
Q 013877 188 D 188 (434)
Q Consensus 188 d 188 (434)
.
T Consensus 75 ~ 75 (289)
T 3e48_A 75 I 75 (289)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=0.98 Score=38.66 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=58.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCc----cccCCCcCCHHhhh---
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETI--- 176 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~----~~~~~~~~~~~Ea~--- 176 (434)
.++ .+|.-||+|. | .++..+.+. +.+| ++.+.++...+.+++ .|. .. ...+..+.+
T Consensus 32 ~~~-~~vldiG~G~-G-~~~~~l~~~------~~~v-~~~D~~~~~~~~a~~~~~~~~~~~~~~~---~~~d~~~~~~~~ 98 (192)
T 1l3i_A 32 GKN-DVAVDVGCGT-G-GVTLELAGR------VRRV-YAIDRNPEAISTTEMNLQRHGLGDNVTL---MEGDAPEALCKI 98 (192)
T ss_dssp CTT-CEEEEESCTT-S-HHHHHHHTT------SSEE-EEEESCHHHHHHHHHHHHHTTCCTTEEE---EESCHHHHHTTS
T ss_pred CCC-CEEEEECCCC-C-HHHHHHHHh------cCEE-EEEECCHHHHHHHHHHHHHcCCCcceEE---EecCHHHhcccC
Confidence 345 8999999998 3 445556665 5454 566665655665554 332 11 023544433
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
...|+|+..-+......+++++...|+||..+++.
T Consensus 99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEE
Confidence 35799998776566678888999999998766543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.55 E-value=0.77 Score=45.51 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCcccc-CCC---cCCHHhhhc------
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETIS------ 177 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~-~~~---~~~~~Ea~~------ 177 (434)
.| ++|.|+|.|.+|...++-++.. | .+|++..+. ++..+.+++.|.... +.. ..+..+.+.
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 195 AG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGS-PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp BT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCceEEEEcCC-HHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCC
Confidence 46 8999999999999999988888 8 487665554 455677888886420 100 001112221
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
..|+||-++.... .++...+.|+++-.++.
T Consensus 267 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~ 296 (380)
T 1vj0_A 267 GADFILEATGDSR---ALLEGSELLRRGGFYSV 296 (380)
T ss_dssp CEEEEEECSSCTT---HHHHHHHHEEEEEEEEE
T ss_pred CCcEEEECCCCHH---HHHHHHHHHhcCCEEEE
Confidence 4799999987432 23333445556555543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=88.50 E-value=0.41 Score=46.32 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
+||.|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~------G~~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH------GIKVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 6899999999999999999999 9999888653
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.91 Score=46.54 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=60.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC----ch-------hHHHHHHcCccccCCCcCCHHh
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SR-------SFAEARAAGFTEENGTLGDIYE 174 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~----~~-------s~~~A~~~G~~~~~~~~~~~~E 174 (434)
-++. .||.|+|.|.-|.++|+-|... |. +|++.++++ .+ ....+..... .....+++|
T Consensus 185 ~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~e 254 (398)
T 2a9f_A 185 SLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLED 254 (398)
T ss_dssp CTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCSH
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHHH
Confidence 4455 7999999999999999999988 88 888777653 11 1122222111 111356899
Q ss_pred hhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 175 a~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++++|++|=+..|.... +++...|+++.+|...
T Consensus 255 av~~ADV~IG~Sapgl~T---~EmVk~Ma~~pIIfal 288 (398)
T 2a9f_A 255 ALEGADIFIGVSAPGVLK---AEWISKMAARPVIFAM 288 (398)
T ss_dssp HHHTTCSEEECCSTTCCC---HHHHHTSCSSCEEEEC
T ss_pred HhccCCEEEecCCCCCCC---HHHHHhhCCCCEEEEC
Confidence 999999987665443321 2455668888887744
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.31 E-value=2.7 Score=41.34 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh---ccCCEEE
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~---~~ADiVi 183 (434)
.| ++|.|+| .|.+|...++-++.. |.+|++.. . ++..+.+++.|.... +....+..+.+ ...|+||
T Consensus 183 ~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 183 TG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVC-S-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEe-C-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEE
Confidence 46 8999999 799999999999888 88876554 3 345677888886320 11112333333 3579999
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
-++.... ..+......++++..++...
T Consensus 254 d~~g~~~--~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 254 DNVGGST--ETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp ESSCTTH--HHHGGGGBCSSSCCEEEESC
T ss_pred ECCCChh--hhhHHHHHhhcCCcEEEEeC
Confidence 8887542 12344456677776665544
|
| >3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=88.30 E-value=1 Score=43.86 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=54.2
Q ss_pred CccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc
Q 013877 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 98 ~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.+.|......++| +||++||+- .....+++. +.++.|..++.. .|..+ ....+++++
T Consensus 129 ~d~~~~~~~~~~g-~kV~vIG~f----P~i~~~~~~------~~~l~V~E~~p~--------~g~~p----~~~~~~~lp 185 (270)
T 3l5o_A 129 NDPFIMSQNEVKG-KKVGVVGHF----PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILP 185 (270)
T ss_dssp CCHHHHTTTTTTT-SEEEEESCC----TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGG
T ss_pred cCchhhhhcccCC-CEEEEECCc----hhHHHHHhc------CCCEEEEECCCC--------CCCCC----hhHHHHhhc
Confidence 3456666677889 999999984 345567776 778887777532 23332 234567899
Q ss_pred cCCEEEEeecchHHHHHHHHHHhcCCCCcE
Q 013877 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSI 207 (434)
Q Consensus 178 ~ADiViLavpd~a~~~vl~eI~~~Lk~g~i 207 (434)
+||+||+.-. ..+-..++.|..+.++...
T Consensus 186 ~~D~viiTgs-tlvN~Tl~~lL~~~~~a~~ 214 (270)
T 3l5o_A 186 ECDYVYITCA-SVVDKTLPRLLELSRNARR 214 (270)
T ss_dssp GCSEEEEETH-HHHHTCHHHHHHHTTTSSE
T ss_pred cCCEEEEEee-hhhcCCHHHHHhhCCCCCE
Confidence 9999887532 2333455555555555443
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=88.16 E-value=0.74 Score=46.50 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHH----HHHcCccccCCCcCCHHhhhc
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
.|+| .||++||= +++..|++..+..- |.+|.+...++ +...+. +.+.|.... .+.|++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5788 99999995 58889999888877 98887664332 222222 344563210 146788 999
Q ss_pred cCCEEEEe
Q 013877 178 GSDLVLLL 185 (434)
Q Consensus 178 ~ADiViLa 185 (434)
++|+|+.-
T Consensus 220 ~aDVVytd 227 (355)
T 4a8p_A 220 GADFLYTD 227 (355)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEec
Confidence 99999963
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=88.14 E-value=0.42 Score=41.17 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=28.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.|+|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~------G~~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA------GHQVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCCEEEEECC
Confidence 599999999999999999999 9999887653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.01 E-value=1.2 Score=43.64 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=57.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~AD 180 (434)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..+. ++..+.+++.|.... +....+..+.+. ..|
T Consensus 170 ~g-~~vlV~GasggiG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 170 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred Cc-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCC-hhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcE
Confidence 45 89999998 99999999999988 9887766554 344567777775310 111112222221 579
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+||.++... .+......++++-.++.
T Consensus 242 ~vi~~~G~~----~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 242 IIIEMLANV----NLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp EEEESCHHH----HHHHHHHHEEEEEEEEE
T ss_pred EEEECCChH----HHHHHHHhccCCCEEEE
Confidence 999888753 23444455666555543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.99 E-value=3.1 Score=37.82 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=35.7
Q ss_pred ccccccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 101 FNLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 101 f~~~~~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
++..+..++| |++-|.|. |-+|.++++.|.+. |++|++..|...
T Consensus 5 ~~~~~~~l~~-k~vlITGas~gIG~~ia~~l~~~------G~~V~~~~r~~~ 49 (247)
T 3i1j_A 5 YSAHPELLKG-RVILVTGAARGIGAAAARAYAAH------GASVVLLGRTEA 49 (247)
T ss_dssp CCCCTTTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCCCccCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEecCHH
Confidence 4444567889 99999996 68999999999999 999887777533
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=87.94 E-value=0.63 Score=47.25 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=44.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiVi 183 (434)
.+.| +||+|||-|..|..+++.+++. |++|++.+.. ..+......+.+.. ....| +.++++++|+|+
T Consensus 32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d~~-~~~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLDPD-PASPAGAVADRHLR--AAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-TTCHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCC-CcCchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence 4567 9999999999999999999998 9998766433 22222222222221 11223 345667899988
Q ss_pred E
Q 013877 184 L 184 (434)
Q Consensus 184 L 184 (434)
.
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=87.92 E-value=0.31 Score=49.27 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=52.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEec--CCchhHHHHHHcCccccCCCcCCH-HhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLR--KGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~---~Vivg~r--~~~~s~~~A~~~G~~~~~~~~~~~-~Ea~~~ADiViL 184 (434)
.||+||| .|..|.-+.+-|.+. ++ ++..... ...+.... .|... .+.+. .+.++++|+||+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~~---~~~~~---~~~~~~~~~~~~~Dvvf~ 70 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLKF---KDQDI---TIEETTETAFEGVDIALF 70 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEEE---TTEEE---EEEECCTTTTTTCSEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCccee---cCCCc---eEeeCCHHHhcCCCEEEE
Confidence 5899999 899999999988775 54 2222211 11111110 11100 01111 234678999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
|+|.....+..+.+. +.|..+++.++
T Consensus 71 a~~~~~s~~~a~~~~---~~G~~vIDlSa 96 (366)
T 3pwk_A 71 SAGSSTSAKYAPYAV---KAGVVVVDNTS 96 (366)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCChHhHHHHHHHHH---HCCCEEEEcCC
Confidence 999888877776653 45777777665
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=87.87 E-value=0.78 Score=49.36 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG 146 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg 146 (434)
.+.+++ .+|.|||+|-.|..+|++|... |+ ++.+.
T Consensus 322 q~kL~~-~kVLIVGaGGLGs~va~~La~a------GVG~ItLv 357 (598)
T 3vh1_A 322 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFV 357 (598)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHTT------TCCEEEEE
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEE
Confidence 367888 9999999999999999999998 87 55555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 434 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 4e-94 | |
| d1qmga1 | 288 | a.100.1.2 (A:308-595) Class II ketol-acid reductoi | 2e-57 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 1e-41 | |
| d1np3a1 | 145 | a.100.1.2 (A:183-327) Class I ketol-acid reductois | 4e-23 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.004 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 281 bits (719), Expect = 4e-94
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 288 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 188 bits (480), Expect = 2e-57
Identities = 115/134 (85%), Positives = 127/134 (94%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
LEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 354 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEG 413
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEG
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEG 120
Query: 414 LPAFPMGKIDQTRI 427
LPAFPMGKIDQTR+
Sbjct: 121 LPAFPMGKIDQTRM 134
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 143 bits (363), Expect = 1e-41
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 92.7 bits (230), Expect = 4e-23
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 3/133 (2%)
Query: 295 EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 354
+ E +D+FGE+ +L G +V++ F E G ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 355 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGL 414
Y+ + + E+ + + + G + + G Y
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 415 PAFPMGKIDQTRI 427
I
Sbjct: 122 ---YRRNNAAHPI 131
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.0 bits (82), Expect = 0.004
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFR 116
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 434 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 100.0 | |
| d1np3a1 | 145 | Class I ketol-acid reductoisomerase {Pseudomonas a | 99.96 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.85 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.82 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.77 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.77 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.7 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.54 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.5 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.44 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.43 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.34 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.32 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.26 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.13 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.13 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.07 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.04 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.94 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.91 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.89 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.86 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.83 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.8 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.79 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.78 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.77 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.72 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.64 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.58 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.55 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.51 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.39 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.38 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.38 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.06 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.04 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.92 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.89 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.84 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.8 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.75 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.57 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.47 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.4 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.37 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.34 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.31 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.3 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.28 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.28 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.25 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.18 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.18 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.15 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.14 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.13 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.07 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.03 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.02 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.02 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.0 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.99 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.98 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.96 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.96 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.96 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.95 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.86 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.84 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.81 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.76 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.75 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.7 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.67 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.63 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.6 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.57 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.56 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.54 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.46 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.43 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.36 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.28 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.25 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.21 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.13 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.13 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.05 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.96 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.96 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.87 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.85 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 95.85 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.82 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.56 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.56 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.51 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.51 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.49 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.37 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.24 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.24 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.23 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.06 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.02 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.99 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.97 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 94.95 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.91 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.89 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 94.83 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.8 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.74 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.54 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.48 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.36 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 94.35 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.29 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.26 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.18 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.12 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.08 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.01 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.95 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.89 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 93.77 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.29 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.28 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.21 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.12 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.12 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 93.08 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.06 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.82 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.69 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.6 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.45 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 92.39 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 92.32 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.27 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 92.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.89 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 91.74 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 91.72 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.57 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.55 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.34 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.22 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.11 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.1 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.07 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 91.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.98 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.98 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.93 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.87 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 90.79 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.58 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.51 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.34 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.3 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 90.3 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.24 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.2 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.08 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.99 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.98 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.98 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.87 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.77 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 89.75 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 89.72 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.71 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.71 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.7 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.66 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.65 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.4 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 89.23 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.16 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.94 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.83 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 88.81 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 88.77 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.65 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 88.53 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.44 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 88.27 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 88.19 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.11 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 87.74 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 87.7 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.64 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 87.58 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 87.56 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 87.4 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.37 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 87.33 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.32 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.16 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.06 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 86.91 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 86.88 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.7 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 86.66 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.58 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 86.47 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.4 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.8 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 85.79 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 85.6 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 85.51 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 85.49 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 85.45 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 85.24 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.07 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 85.02 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 84.95 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.62 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 84.37 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 84.37 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.3 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.11 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 83.72 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 83.68 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 83.44 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 83.11 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 83.07 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 82.98 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 82.89 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 82.63 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 82.48 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.45 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 82.44 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.39 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.15 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 81.8 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 81.76 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 81.13 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 80.99 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.98 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 80.79 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 80.33 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=2e-58 Score=434.62 Aligned_cols=226 Identities=84% Similarity=1.310 Sum_probs=211.2
Q ss_pred CccccccccchhhhhhhhcccccchhhccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 013877 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~ 147 (434)
++++++||+++|++++++|+|++|+|++++||+|++++++|||+|||+|||||+||+|+|+|||||-.+.++|++|+||+
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGL 80 (226)
T d1qmga2 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGL 80 (226)
T ss_dssp CCSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999722222467899999
Q ss_pred cCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCC
Q 013877 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (434)
Q Consensus 148 r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~ 227 (434)
|+++++|++|+++||.+.+.++.+++|++++||+|++++||+.|.++|++|.|+|++|++|.|+|||+++|.....+.||
T Consensus 81 r~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p 160 (226)
T d1qmga2 81 RKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFP 160 (226)
T ss_dssp CTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCC
T ss_pred CCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccC
Confidence 99999999999999986566677899999999999999999999999999999999999999999999988765556789
Q ss_pred CCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccc
Q 013877 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (434)
Q Consensus 228 ~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iett 293 (434)
+|++|+||+||+||+.||++|++|+.++|.|+|++|+|+||.||++++++++|+.++|+.++||||
T Consensus 161 ~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 161 KNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.9e-44 Score=328.00 Aligned_cols=169 Identities=36% Similarity=0.581 Sum_probs=161.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
.+.+++ |+|+|||||+||+++|+||||| |++|+|++|+++++|++|+++||. +.+++|++++||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 368899 9999999999999999999999 999999999999999999999998 5799999999999999
Q ss_pred eecchHHHHHHH-HHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 185 avpd~a~~~vl~-eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
++||..|.++|+ +|.|+|++|++|.|+|||+++|. .+.||++++|+|++||+||+.||++|++| +|+|+++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~---~I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYN---QVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTT---SSCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEee---eeecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 69999999999999999999875 57999999999999999999999999997 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccc
Q 013877 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~~--~iett 293 (434)
+++||.||++++++++|+.++|++| +|+||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999997 78885
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=2.4e-34 Score=279.53 Aligned_cols=139 Identities=83% Similarity=1.289 Sum_probs=133.0
Q ss_pred hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh
Q 013877 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (434)
Q Consensus 294 f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~ 373 (434)
|++|+++||||||++|||+++++++++|+.++++|++|++||++++|+++++|+++|+++||.+||+++|++++..|-..
T Consensus 1 f~~E~~SDl~GEq~iL~G~~~~~~~~~f~~l~~~G~~p~~Ay~etvee~t~~I~~lI~~~Gi~~My~~lS~~ak~~~~~~ 80 (288)
T d1qmga1 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAA 80 (288)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHTTHHHHHTHHHHHHHHTCHHHHHHTSCHHHHHHHHHH
T ss_pred CchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhChHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998888777676
Q ss_pred hhccchhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 374 ~~~~~~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
|...+.|++++|+++|++|+||+|+|+||++++|+|||++|++|||++|++++|||++.
T Consensus 81 ~~~~~~~~kpvf~e~yddV~SG~eak~vi~a~~r~dyre~L~~~em~eI~~temwkvG~ 139 (288)
T d1qmga1 81 YSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE 139 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHcCCccchHHhcchhhhhhhcccHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999863
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=9e-31 Score=232.68 Aligned_cols=133 Identities=17% Similarity=0.296 Sum_probs=119.8
Q ss_pred hhhhcccccccchhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhhhh
Q 013877 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (434)
Q Consensus 294 f~~E~~~Dlfge~tvL~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~~~m~~~vssp~~~eyg~~ 373 (434)
|++|+++||||||++|||+++++++++|+++|++|++||.||++|+|+++ +|+++|+++|+.+|+++|| +|++||+|
T Consensus 1 F~~E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~he~~-lI~~li~~~Gl~~m~~~iS--dTAeyG~y 77 (145)
T d1np3a1 1 FKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELK-LIVDLMYEGGIANMNYSIS--NNAEYGEY 77 (145)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHH
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHccc-hhHHHHHHHhHHHHHHHhc--cHHHHHHH
Confidence 78999999999999999999999999999999999999999999999997 7999999999999999999 78899998
Q ss_pred -hhc--cchhHHHHHHHHHHhccCChhHHHHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 374 -YSA--SYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 374 -~~~--~~~p~~~~m~e~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+.. -..+++..|+++|++|++|+|+|+|+.+++..+.+ |.+ ++++|+++.||+||.
T Consensus 78 ~~~~~~~~~~~k~~mk~~l~~IqsG~fak~~i~e~~~~~~~--l~~-~~~~~~~h~IE~VG~ 136 (145)
T d1np3a1 78 VTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPS--MTA-YRRNNAAHPIEQIGE 136 (145)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHH--HHH-HHHHHHHSHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH--HHH-HHHhhhcCCHHHHHH
Confidence 322 23568889999999999999999999998765333 554 799999999999974
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.85 E-value=1.1e-21 Score=173.43 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=123.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||||||+|+||.+++++|.++ |++++++.|+.++..+.+++.|+.. +.+++|++++||+||+|+||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999998 9999999887666666677788875 67899999999999999999877
Q ss_pred HHHHHHHHhcCCCCcEE-EEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCCC
Q 013877 192 ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL-~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvs 270 (434)
.++++ .++++++| ++++|+++..+++ .++++.+++|+|||+|... |.|++. ++....++
T Consensus 71 ~~vl~----~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v------------~~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVLK----PLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALVS 130 (152)
T ss_dssp HHHHT----TSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTCC
T ss_pred HHHhh----hcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc------------CccceE-EEeCCCCC
Confidence 76654 46677754 6889999887766 5567889999999999887 477888 66688899
Q ss_pred HHHHHHHHHHHHHhCCC
Q 013877 271 GRATNVALGWSVALGSP 287 (434)
Q Consensus 271 g~a~e~a~~la~aiG~~ 287 (434)
.+..+.+..++..+|..
T Consensus 131 ~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 131 QELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 99999999999999954
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.82 E-value=9.9e-21 Score=166.48 Aligned_cols=146 Identities=15% Similarity=0.250 Sum_probs=118.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|||+|+||.+++++|.++ | ++|.+++|+.++..+.+++.|+.. ..+. +.++++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999988 6 788877777555555666678764 3344 45678999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
..++++++.+ .++ +|++++|+++..+++ .++.+..++|+|||+|... |.|++. ++...+.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~------------~~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh------------cCCcEE-EEeCCCC
Confidence 8888877643 344 456889999888876 6677778999999999887 478988 5567888
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 013877 270 DGRATNVALGWSVALGSP 287 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~ 287 (434)
+.+..+.++.++..+|..
T Consensus 131 ~~~~~~~v~~l~~~~G~~ 148 (152)
T d1yqga2 131 SETDRRIADRIMKSVGLT 148 (152)
T ss_dssp CHHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHHHHhCCCE
Confidence 999999999999999953
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.77 E-value=1e-18 Score=154.34 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=120.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
|||+|||+|+||.++|++|+++ |++|.+++ ++.+..+.+.+.|+... ..+..+++++||+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~d-~~~~~~~~a~~~~~~~~---~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVS-RQQSTCEKAVERQLVDE---AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTSCSE---EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEE-CCchHHHHHHHhhccce---eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 99987654 44666788888887521 34556789999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCC
Q 013877 192 ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
.++++++.++++++++|+++.+.... ...+ . ..+++..||...... ..+..+......|.++++++...
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~---~---~~~~~~~h~~~~~~~--~g~~~a~~~l~~~~~~il~~~~~ 142 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQ---L---WSGFIGGHPMAGTAA--QGIDGAEENLFVNAPYVLTPTEY 142 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHH---H---STTCEEEEECCCCSC--SSGGGCCTTTTTTCEEEEEECTT
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHH---h---hcccccceeeecccc--cchhhhcccccCCCeEEEEeCCC
Confidence 99999999999999999988766422 2211 1 125778888443211 12223333334567888888888
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 013877 269 VDGRATNVALGWSVALGSP 287 (434)
Q Consensus 269 vsg~a~e~a~~la~aiG~~ 287 (434)
.+.++++.+..++..+|+.
T Consensus 143 ~~~~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 143 TDPEQLACLRSVLEPLGVK 161 (165)
T ss_dssp CCHHHHHHHHHHHGGGTCE
T ss_pred CCHHHHHHHHHHHHHhCCE
Confidence 8999999999999999963
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.77 E-value=9.6e-19 Score=154.70 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=125.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcCccccCCCcCCHHh-hhccCCEEEEeec
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E-a~~~ADiViLavp 187 (434)
||||+|||+|+||.++|++|+++ |+ +| ++.+.+.+..+.+++.|+.. ....+..+ ...++|+|++|+|
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I-~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~dlIila~p 71 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKI-YGYDINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEE-EEECSCHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEE-EEEECChHHHHHHHHhhcch--hhhhhhhhhhccccccccccCC
Confidence 68999999999999999999998 86 44 56677778889999998752 22334443 4458999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
++...++++++.++++++++|+++.+... ..++. .++ .++|..||- +|... ..++.+++.++.|.+++++
T Consensus 72 ~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~---~~~--~~~i~~hPm-~G~e~-sG~~~a~~~Lf~g~~~il~ 144 (171)
T d2g5ca2 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILG--KRFVGGHPI-AGTEK-SGVEYSLDNLYEGKKVILT 144 (171)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHG--GGEECEEEE-CCCSC-CSGGGCCSSTTTTCEEEEC
T ss_pred chhhhhhhhhhhccccccccccccccccHHHHHHHHH---hhc--ccccccccc-ccccc-ccHHHHHHHhhCCCeEEEe
Confidence 99999999999999999999999987642 23322 222 269999993 33321 2345566667788999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC
Q 013877 265 VHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~~ 287 (434)
++...+.++++.+..++..+|+.
T Consensus 145 p~~~~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 145 PTKKTDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCHHHHHHHHHHHHHcCCE
Confidence 99999999999999999999974
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.70 E-value=9.6e-19 Score=169.31 Aligned_cols=117 Identities=8% Similarity=0.042 Sum_probs=104.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHhcHHHHHHhcCCcchhhhhhh-hhccchhHHHHHHH
Q 013877 310 LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK-IISTQGMLAVYNSFSGEDKKEFEKA-YSASYYPCMEILYE 387 (434)
Q Consensus 310 ~G~~~aliea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~-li~e~G~~~m~~~vssp~~~eyg~~-~~~~~~p~~~~m~e 387 (434)
.|.+.+++.|+||+++++|++|++||++++|+++ +|.+ +|+++|+.+|+++|| +||+||++ +..+. ...++++
T Consensus 158 ~g~~~~~~~a~~e~l~~~G~~~~~a~~E~~~E~~-~~~~~li~~~g~~~M~~~~S--~TA~~G~~~~~prf--~~~~~~~ 232 (288)
T d1qmga1 158 AGVYVALMMAQIEILRKKGHSYSEIINESVIEAV-DSLNPFMHARGVSFMVDNCS--TTARLGSRKWAPRF--DYILSQQ 232 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHTHHHH-HTTHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHH--HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHhh--HHHHcccccchhhh--hHHHHHH
Confidence 6888899999999999999999999999999998 4666 999999999999999 78899997 43222 1247889
Q ss_pred HHHhccCChhHHHHHHhcCccchhcCCCCCcccccccccccccCC
Q 013877 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRIPINTS 432 (434)
Q Consensus 388 ~~~~v~~G~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
+|++|++|.|+++||.+|+..+++.++.+ +..+++.+++|++|.
T Consensus 233 ~l~~i~~G~~a~~~l~en~~~~p~h~~~~-~~~~lR~~~~~~vg~ 276 (288)
T d1qmga1 233 ALVAVDNGAPINQDLISNFLSDPVHEAIG-VCAQLRPSVDISVTA 276 (288)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHCTHHHHHH-HHHTTSCSCCCCCCT
T ss_pred HHHHhcCChHHHHHHHHhccCChHHHHHH-HHHHhchHHHHHHHH
Confidence 99999999999999999999999988886 899999999999985
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.54 E-value=1.7e-14 Score=127.25 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=107.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
+||||||+|+||.++|++|.++ |++|++++|. .+..+.+.+.|... ..+..|+++++|+||+|+|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCC-cchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 5899999999999999999999 9999877665 44566777778775 67899999999999999997666
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 013877 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (434)
Q Consensus 192 ~-~vl---~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~alia 264 (434)
. +++ +.+.+.+++|++|++.+-.... .+.+ .....+++++-....+ ++. .-+. |-..++
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~g-g~~---~a~~-------g~l~~~- 135 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSG-GEP---KAID-------GTLSVM- 135 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEES-HHH---HHHH-------TCEEEE-
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccC-Chh---HHhc-------CCeEEE-
Confidence 5 566 3588999999999887665422 1211 1224578888664433 221 1122 333323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 013877 265 VHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 265 v~qdvsg~a~e~a~~la~aiG~ 286 (434)
+.. +.++.+.++.++..+|.
T Consensus 136 ~gG--~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 136 VGG--DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp EES--CHHHHHHHHHHHHTTEE
T ss_pred EcC--CHHHHHHHHHHHHHhcC
Confidence 333 56889999999999985
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.50 E-value=9.2e-14 Score=120.67 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=105.4
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
|+||+||| +|+||.++|++|+++ |++|.++++.... ..++.++++|++++++|+.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 48999999 999999999999999 9999887764321 2345678899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEEeecCCC
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~aliav~qdv 269 (434)
+..+++.++.++++++++|+++..+.....+...-..+ .++|..||- .|+.. .+ ..|-...+++..
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP~-~Gp~~-----~~----~~g~~~v~~~g~-- 130 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPM-FGADI-----AS----MAKQVVVRCDGR-- 130 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEEC-SCTTC-----SC----CTTCEEEEEEEE--
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEeccc-CCCcc-----cc----cCCcEEEEecCC--
Confidence 99999999999999999999998876332211111233 368999994 34431 11 134555555554
Q ss_pred CHHHHHHHHHHHHHhCCCccccc
Q 013877 270 DGRATNVALGWSVALGSPFTFAT 292 (434)
Q Consensus 270 sg~a~e~a~~la~aiG~~~~iet 292 (434)
+.++.+.++.++..+|+ ++++|
T Consensus 131 ~~~~~~~~~~ll~~~Ga-~v~et 152 (152)
T d2pv7a2 131 FPERYEWLLEQIQIWGA-KIYQT 152 (152)
T ss_dssp CGGGTHHHHHHHHHTTC-EEEEC
T ss_pred CHHHHHHHHHHHHHhCC-EEEeC
Confidence 35678889999999997 45544
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.44 E-value=4.6e-13 Score=118.13 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=108.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
|+||||||+|+||.++|++|.++ |++|.+++|. .+..+.+...|... ..+..|+++.+|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECc-hhhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 68999999999999999999999 9999877765 44466777778775 6789999999999999999887
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 191 ~~-~vl~---eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
.. +++. .+.+.+++|++|++.+..... .+.+ .....+++++- +|-.-++. .-++ |.-.++
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~---~a~~-------G~l~~~ 136 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAA-------GTLTFM 136 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHH---HHHH-------TCEEEE
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCcc---cccc-------CCeEEE
Confidence 75 4654 378889999999988766432 2221 12245788885 46433333 1123 343433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCC
Q 013877 264 AVHQDVDGRATNVALGWSVALGS 286 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~ 286 (434)
+.. +.++.+.++.++..+|.
T Consensus 137 -~gG--~~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 137 -VGG--DAEALEKARPLFEAMGR 156 (162)
T ss_dssp -EES--CHHHHHHHHHHHHHHEE
T ss_pred -ecC--CHHHHHHHHHHHHHHcC
Confidence 233 46788999999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=9.1e-15 Score=126.89 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=87.6
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHHHH
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~~~ 193 (434)
|||||+|+||.+++++|++. +..+.|++|+.++..+.+...+.. ..+.+|+++++|+||+|+||.++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999766 544457788766666666655544 5678899999999999999999888
Q ss_pred HHHHHHhcCCCCcEEEEecc-chhhhhhcccccCCCCccEEEeccCC----ChhhHHHHHhhcccccCCCceEEEeecCC
Q 013877 194 NYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKG----MGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (434)
Q Consensus 194 vl~eI~~~Lk~g~iL~~s~G-~~i~~~~~~~i~~~~di~VI~v~Pn~----pg~~vr~ly~~G~~~~G~Gv~aliav~qd 268 (434)
+++++. +++++|+++++ ..+..++. .....+||.. +.... .. ..+.++ ++..
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~--~~~g- 127 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK--------SGRASIHPNFSFSSLEKAL----EM-----KDQIVF--GLEG- 127 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS--------SSEEEEEECSCC--CTTGG----GC-----GGGCCE--EECC-
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh--------hccccceeeeecccccchh----hh-----ccCcEE--EEeC-
Confidence 876653 46787775554 44443321 1222334322 22221 11 122333 3444
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 013877 269 VDGRATNVALGWSVALGSP 287 (434)
Q Consensus 269 vsg~a~e~a~~la~aiG~~ 287 (434)
+.++.+.++.|+..+|+.
T Consensus 128 -d~~~~~~~~~l~~~lG~~ 145 (153)
T d2i76a2 128 -DERGLPIVKKIAEEISGK 145 (153)
T ss_dssp -CTTTHHHHHHHHHHHCSC
T ss_pred -CHHHHHHHHHHHHHHCCc
Confidence 357899999999999975
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.34 E-value=1.9e-12 Score=112.62 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=80.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh-HHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||||||+|+||.++|++|+++ |++|+++++..++. ...+...++ ..++.|+++++|+||+|+|+..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGV------TETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTC------EECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhcccc------cccHHHHHhhcCeEEEEecCch
Confidence 5899999999999999999999 99988877664433 233333333 3578899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---hhhhhcccccCCCCccEEEeccCCCh
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg 241 (434)
..+++.++.+.+ ++++++.+... ...+.+ .++ +..++-+.+.++.
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~~ 116 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGSV 116 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSCH
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCCc
Confidence 999998888776 45777665543 233333 333 3456655544543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.32 E-value=3.5e-12 Score=112.00 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=78.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-----------CCCcCCHHhhhccCC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------~~~~~~~~Ea~~~AD 180 (434)
|||+|||+|+||.++|..|.++ |++|.++.|. ++..+...+.|.... .-...+..|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 8999999999999999999999 9999887765 344555555442210 001357889999999
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+||+++|...+.+++++|+++++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888775
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.26 E-value=7.1e-12 Score=111.61 Aligned_cols=152 Identities=15% Similarity=0.065 Sum_probs=102.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc----CCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----~~~~~~~~Ea~~~ADiViLavp 187 (434)
.+|||||+|+||.+||++|.++ |++|++++|..++ .+...+.+.... .....++.+++..+|+|++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 5799999999999999999999 9999888877555 444444443210 0013356678889999999999
Q ss_pred chHH-HHHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 013877 188 DAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (434)
Q Consensus 188 d~a~-~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ali 263 (434)
+... .++++++.+.+++|+++++.+-.... .+.+ .....++.++- +|-.-++.. -++ |. .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~ld-apvsGg~~~---A~~-------G~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVG-SGVSGGEDG---ARY-------GP-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-EEEESHHHH---HHH-------CC-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceec-cccccCccc---ccC-------Cc-EEE
Confidence 7655 57888999999999999988765432 1111 12235677774 453333321 123 34 333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 013877 264 AVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 264 av~qdvsg~a~e~a~~la~aiG~~ 287 (434)
+.. +.+..+.++.++..+|..
T Consensus 142 -~gG--~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGG--NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -cCC--CHHHHHHHHHHHHHHhcc
Confidence 343 345788899999999863
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.13 E-value=4.8e-10 Score=100.24 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=74.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CchhHHHHHHcCcccc-----C----CCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEE-----N----GTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~-----~----~~~~~~~Ea~~~ADi 181 (434)
|||+|||.|++|.++|..|.++ |++|.++.|. +.+..+.-.+...... . ....+.+++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 6999999999999999999999 9999888764 2222222222211100 0 013567899999999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|++++|.+...++++++.|+++++.+|+.+.|.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999988888777775
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.2e-10 Score=100.98 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=113.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-----------HcCcccc--------------
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE-------------- 165 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~-------------- 165 (434)
++||+|||.|.||.++|..+... |++|++.++.. +..+.+. +.|....
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~-~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTE-DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCh-HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 48999999999999999999999 99998776653 2222221 2232100
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChh
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (434)
-....+..+++++||+|+=++|..... +++.+|.+.++++++|. -++++.+..+.. .....-+++..||--|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 001457788999999999999976553 79999999999999885 666787776655 333344899999988887
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.+ -.-- +.++...+.+..+.+.+++..+|..
T Consensus 154 ~~-------------~lVE-Iv~g~~T~~~~i~~~~~~~~~lgk~ 184 (192)
T d1f0ya2 154 VM-------------KLVE-VIKTPMTSQKTFESLVDFSKALGKH 184 (192)
T ss_dssp TC-------------CEEE-EECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred cc-------------cEEE-EcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 62 1222 5567788899999999999999964
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.07 E-value=7.2e-10 Score=99.86 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=111.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCccccC--------CCcC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTLG 170 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~--------~~~~ 170 (434)
+++||+|||.|.||.++|..+..+ |++|++.++. .+..+.+.+ .+..... -...
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 75 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 75 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc
Confidence 468999999999999999999999 9999877654 333333322 1111000 0012
Q ss_pred CHHhhhccCCEEEEeecchHHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhcccccCCCCccEEEeccCCChhhHHHH
Q 013877 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~~--~vl~eI~~~Lk~g~iL~-~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (434)
+..+.+.++|+|+-++|-..-. +++.+|.++.+++++|. -++++.+..+.. .....-.++..|+--|.+.
T Consensus 76 ~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~---- 148 (186)
T d1wdka3 76 LSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM---- 148 (186)
T ss_dssp SSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred cccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCccc----
Confidence 2234578999999999966554 69999999999999874 777888876655 3333458999999888877
Q ss_pred HhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 248 y~~G~~~~G~Gv~al-iav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
++.+ +..+...+.+..+.+.+++..+|..
T Consensus 149 -----------~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~ 178 (186)
T d1wdka3 149 -----------MPLVEVIRGEKSSDLAVATTVAYAKKMGKN 178 (186)
T ss_dssp -----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred -----------CCeEEECCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3332 4567888999999999999999964
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=3.4e-10 Score=98.62 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=71.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||||||+|+||.+||+||.+. |+.+ +++|..++..+.+.+.+.. .+..+.+.++|++++++|+...
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~------g~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARR------FPTL-VWNRTFEKALRHQEEFGSE------AVPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTT------SCEE-EECSSTHHHHHHHHHHCCE------ECCGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEeHHHHHHHHHHHHHhC------CCEE-EEeCCHHHHHHHHHHcCCc------ccccccccceeEEEecccchhh
Confidence 4799999999999999999988 8754 7888877766666655544 2345667789999999998776
Q ss_pred H-HHHHHHHhcCCCCcEEEEeccch
Q 013877 192 A-DNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 192 ~-~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
. .+...+.+.++++.++++.+-..
T Consensus 68 v~~~~~~l~~~~~~~~~iid~sT~~ 92 (156)
T d2cvza2 68 VYEVAEALYPYLREGTYWVDATSGE 92 (156)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred hhhhhccccccccccccccccccCC
Confidence 5 56667999999999988776553
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.94 E-value=6.2e-10 Score=100.48 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=78.4
Q ss_pred hccCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH
Q 013877 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (434)
Q Consensus 94 ~~~~~~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~ 173 (434)
+|+|+|........++| ++|||||+|.+|..+|+.++.. |.+|+++++...+ ..... ..+.+
T Consensus 26 ~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~~----~~~l~ 87 (181)
T d1qp8a1 26 MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWRF----TNSLE 87 (181)
T ss_dssp HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSCC----BSCSH
T ss_pred HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------cceee----eechh
Confidence 56678866655557999 9999999999999999999987 9998776654221 12221 45789
Q ss_pred hhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe-cc
Q 013877 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG 213 (434)
Q Consensus 174 Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s-~G 213 (434)
|++++||+|++++|..... .++. +.+..||+|++|+-+ -|
T Consensus 88 ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG 130 (181)
T d1qp8a1 88 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRA 130 (181)
T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCG
T ss_pred hhhhccchhhcccccccccccccccceeeeccccceEEecccc
Confidence 9999999999999976653 4564 688899999998744 44
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.91 E-value=3.1e-09 Score=93.77 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=97.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCC----CcCC---HHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----TLGD---IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~----~~~~---~~Ea~~~ADiViL 184 (434)
|||||||+|+||.+||++|.++ |++|.+++|..++..+..++ |...... ...+ +-..+..++.+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKA-NASAPFAGNLKAFETMEAFAASLKKPRKALI 74 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHH-TTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHc-CCccccccchhhhhhhhHHHHhcccceEEEE
Confidence 6899999999999999999999 99998877765554444333 3321000 0112 2345567888888
Q ss_pred eecchHHH-HHHHHHHhcCCCCcEEEEeccchh---hhhhcccccCCCCccEEEeccCCChhhHHHHHhhcccccCCCce
Q 013877 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (434)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~g~iL~~s~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~~~~G~Gv~ 260 (434)
++++.... .++..+.+.+++|+++++.+-... ..+.+ . ....++.++-. |-.-+.. ..++ |.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~-~-l~~~~~~~lda-pv~g~~~---~a~~-------g~~ 141 (178)
T d1pgja2 75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLGM-GISGGEE---GARK-------GPA 141 (178)
T ss_dssp CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEEE-EEESHHH---HHHH-------CCE
T ss_pred eecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH-H-HhhcceeEecc-cccCCcc---hhcC-------CcE
Confidence 88876664 788889999999999887654322 12222 1 22456777653 4222221 2233 343
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 261 aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
. + +.. +.+..+.++.++..+|..
T Consensus 142 ~-m-vgG--~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 142 F-F-PGG--TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp E-E-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred E-E-eeC--CHHHHHHHHHHHHHHhcc
Confidence 3 3 333 568999999999999963
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.89 E-value=3.9e-09 Score=95.39 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=93.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC--------ccccC--CCcCCHHhhhccC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEEN--GTLGDIYETISGS 179 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------~~~~~--~~~~~~~Ea~~~A 179 (434)
-|+||+|||.|++|.++|..|.++ |++|.++.|..+ ..+.-.+.+ +...+ ....+++++++++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~-~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA 78 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred eeceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHH-HHHHHhhcccccccccccccccccccchhhhhccCCC
Confidence 358999999999999999999999 999988776533 233222222 11000 0135689999999
Q ss_pred CEEEEeecchHHHHHHHHHHhc-----CCCCc-EEEEeccchh-------hhhhcccccCCCCccEEEeccCCChhhHHH
Q 013877 180 DLVLLLISDAAQADNYEKIFSC-----MKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~-----Lk~g~-iL~~s~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (434)
|+|++++|.+...++++++.++ ++++. +|..+.|+.. +.+.+ .+|.+.-.+..-|+.+..+.
T Consensus 79 d~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e---~~~~~~~~vlsGP~~A~Ev~-- 153 (189)
T d1n1ea2 79 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAIEVA-- 153 (189)
T ss_dssp SCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHHHHH--
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHH---HhcccceEEEecCCcHHHHH--
Confidence 9999999999999999887653 34555 4456678731 12322 23444333555666654442
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH
Q 013877 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282 (434)
Q Consensus 247 ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~ 282 (434)
+|.+..+.+... +.+..+...+++.
T Consensus 154 ----------~~~pt~~viAs~-~~~~a~~i~~lfs 178 (189)
T d1n1ea2 154 ----------TGVFTCVSIASA-DINVARRLQRIMS 178 (189)
T ss_dssp ----------TTCCEEEEEECS-SHHHHHHHHHHHS
T ss_pred ----------cCCCcEEEEEeC-CHHHHHHHHHHhC
Confidence 356554444432 4444444445544
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.86 E-value=2.2e-09 Score=97.73 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=80.4
Q ss_pred hhccCCccccc--------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc
Q 013877 93 IVRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (434)
Q Consensus 93 ~~~~~~~~f~~--------~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (434)
.+|+|+|.... ....+.| ++|||||+|++|..+|+.++.- |.+|+++++..... .....++..
T Consensus 24 ~~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~~~~~~~~ 94 (193)
T d1mx3a1 24 ALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VERALGLQR 94 (193)
T ss_dssp HHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HHHHHTCEE
T ss_pred HHHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--chhhhcccc
Confidence 45677774432 2367899 9999999999999999999876 99987766653332 233346653
Q ss_pred cCCCcCCHHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEE-ecc
Q 013877 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHG 213 (434)
Q Consensus 165 ~~~~~~~~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~-s~G 213 (434)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+- +-|
T Consensus 95 ----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 142 (193)
T d1mx3a1 95 ----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARG 142 (193)
T ss_dssp ----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCT
T ss_pred ----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCc
Confidence 568999999999999999965543 4554 57889999998884 445
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.83 E-value=3.2e-09 Score=96.44 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=78.7
Q ss_pred hhccCCccc----cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCC
Q 013877 93 IVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (434)
Q Consensus 93 ~~~~~~~~f----~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~ 168 (434)
.+|.|+|.. ......++| ++|||||+|++|..+|+.++.. |.+|+++++......... ..+...
T Consensus 26 ~~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~~~~---- 93 (191)
T d1gdha1 26 MIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQATF---- 93 (191)
T ss_dssp HHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHTCEE----
T ss_pred HHHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-cccccc----
Confidence 356677732 222467889 9999999999999999998877 999876655433322333 333332
Q ss_pred cCCHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEEe-cc
Q 013877 169 LGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~s-~G 213 (434)
..+.++++++||+|++++|-... ..++. +.+..||+|++|+-+ -|
T Consensus 94 ~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 141 (191)
T d1gdha1 94 HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 141 (191)
T ss_dssp CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCc
Confidence 46789999999999999996554 35665 578899999988844 45
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.80 E-value=4e-09 Score=96.37 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=75.8
Q ss_pred ccCCcc--ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 95 RGGRDL--FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 95 ~~~~~~--f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
++|+|. ...+ ..+.| ++|||||+|++|..+|+.|+.- |.+|+++++.... .....++. ..+.
T Consensus 27 ~~~~~~w~~~~g-~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~-----~~~l 90 (197)
T d1j4aa1 27 ARHDLRWAPTIG-REVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY-----VDSL 90 (197)
T ss_dssp HTTBCCCTTCCB-CCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-----CSCH
T ss_pred HhCCCCcCCCcC-ccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-----eccc
Confidence 455443 3333 67999 9999999999999999999876 9998766544222 22234554 4689
Q ss_pred HhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEEE-eccc
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGL-SHGF 214 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~~-s~G~ 214 (434)
++++++||+|++++|.... ..++. +.+..||+|++|+- +-|-
T Consensus 91 ~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ 135 (197)
T d1j4aa1 91 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 135 (197)
T ss_dssp HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred cccccccccccccCCccccccccccHHHHhhhCCccEEEecCchh
Confidence 9999999999999996555 35554 57788999998874 4453
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.79 E-value=3.6e-09 Score=95.33 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=79.1
Q ss_pred hhccCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 93 IVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 93 ~~~~~~~~f~~~-~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
.+|.|+|..... ...+.| ++|||||+|.+|..+|+.++.- |.+|+++++... .......++. ..+
T Consensus 26 ~~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~-----~~~ 91 (184)
T d1ygya1 26 SLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE-----LLS 91 (184)
T ss_dssp HHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-----ECC
T ss_pred HHHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-----ecc
Confidence 356778854322 357889 9999999999999999998866 888876555432 2344445655 468
Q ss_pred HHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEEEe
Q 013877 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~~s 211 (434)
.+|++++||+|++++|-.... .++. +.+..||+|++|+-+
T Consensus 92 l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~ 133 (184)
T d1ygya1 92 LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNA 133 (184)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred HHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEe
Confidence 999999999999999966554 5665 688899999988844
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.78 E-value=3.5e-09 Score=95.53 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=80.6
Q ss_pred hccCCccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcC
Q 013877 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (434)
Q Consensus 94 ~~~~~~~f~~---~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~ 170 (434)
+|.|+|.... ....++| ++|||||+|++|..+|+.|+.- |.+|+++++. ..........++.. ..
T Consensus 25 ~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~-~~~~~~~~~~~~~~----~~ 92 (188)
T d2naca1 25 ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRH-RLPESVEKELNLTW----HA 92 (188)
T ss_dssp HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSS-CCCHHHHHHHTCEE----CS
T ss_pred HHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeec-cccccccccccccc----cC
Confidence 4567784322 1356889 9999999999999999999877 8898766554 33344555556654 56
Q ss_pred CHHhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eecc
Q 013877 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (434)
Q Consensus 171 ~~~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G 213 (434)
+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|
T Consensus 93 ~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 138 (188)
T d2naca1 93 TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 138 (188)
T ss_dssp SHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred CHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCch
Confidence 899999999999999996554 45664 5788999999887 4445
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.77 E-value=1e-08 Score=85.78 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=60.7
Q ss_pred ccccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 301 DIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 301 Dlfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
+.|+..|+|+|++|+ +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..|+++|+||.
T Consensus 3 ~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~G-s~~ll~~s~~~~~~L~~~V~Spg 73 (111)
T d1yqga1 3 EKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKG-AVALAEQTGEDFEKLQKNVTSKG 73 (111)
T ss_dssp THHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHhcccCcc
Confidence 467788999999999 88999999999999999999999999999 8999999876 99999999995
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=3.5e-09 Score=90.96 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=70.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc---cCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~---~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
|||+|||+|+||..+|..|.+. |++|.+..|...+... ....+... ......+..+.+..+|+||+++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 6999999999999999999999 9999887775432110 00011100 000023456778899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEE-EEeccch
Q 013877 189 AAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL-~~s~G~~ 215 (434)
....++++.+.+++.++++| ....|+.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred cchHHHHHhhccccCcccEEeeccCccc
Confidence 99999999999999988865 4667875
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.64 E-value=8.4e-09 Score=94.06 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=75.3
Q ss_pred hccCCcccc--ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC
Q 013877 94 VRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (434)
Q Consensus 94 ~~~~~~~f~--~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~ 171 (434)
+++|+|... .....+.| ++|||||+|++|..+|+.|+.- |.+|+++++...+. ....+. ..+
T Consensus 27 ~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~-----~~~ 90 (199)
T d1dxya1 27 LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD-----YVS 90 (199)
T ss_dssp HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE-----ECC
T ss_pred HHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh-----HHH
Confidence 456677432 12367899 9999999999999999999877 99987666543221 111222 458
Q ss_pred HHhhhccCCEEEEeecchHHH-HHHH-HHHhcCCCCcEEE-Eecc
Q 013877 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHG 213 (434)
Q Consensus 172 ~~Ea~~~ADiViLavpd~a~~-~vl~-eI~~~Lk~g~iL~-~s~G 213 (434)
.+++++.||+|++++|..... .++. +.+..||+|++|+ .+-|
T Consensus 91 l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 135 (199)
T d1dxya1 91 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 135 (199)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred HHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccH
Confidence 999999999999999965553 4554 5778899999887 4445
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=2.3e-08 Score=89.94 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=74.4
Q ss_pred hccCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCH
Q 013877 94 VRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (434)
Q Consensus 94 ~~~~~~~f~~~-~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~ 172 (434)
+++|.|..... ...+.| ++|||||+|.+|..+|+.+... |.+|+++++...... ..... ..+.
T Consensus 27 ~~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~----~~~l 90 (188)
T d1sc6a1 27 AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ----VQHL 90 (188)
T ss_dssp HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE----CSCH
T ss_pred HHhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh----hhhH
Confidence 34566643322 346889 9999999999999999999877 999887765432211 12221 4689
Q ss_pred HhhhccCCEEEEeecchHH-HHHHH-HHHhcCCCCcEEE-Eecc
Q 013877 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~-~~vl~-eI~~~Lk~g~iL~-~s~G 213 (434)
+|+++.||+|++++|-... ..++. +.+..|++|++|+ .+-|
T Consensus 91 ~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 134 (188)
T d1sc6a1 91 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 134 (188)
T ss_dssp HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCS
T ss_pred HHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcH
Confidence 9999999999999995544 45665 5788899999887 5555
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.55 E-value=5.9e-08 Score=80.17 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=59.2
Q ss_pred cccchhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 013877 302 IFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (434)
Q Consensus 302 lfge~tvL~G~~~a----liea~~~~~v~~Gl~~e~A~~~~~e~l~Gli~~li~e~G~--~~m~~~vssp~ 366 (434)
.|+..|+|+|++|+ +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..|+++|+||.
T Consensus 2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~g-s~~ll~~~~~~p~~l~~~V~Spg 71 (104)
T d2ahra1 2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLA-SASNLKTSSQSPHDFIDAICSPG 71 (104)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHSSSCHHHHHHHHCCTT
T ss_pred CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHhccCCC
Confidence 36678999999999 67999999999999999999999999999 8999999885 99999999995
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.3e-07 Score=84.11 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=75.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-.|.| |+++|||||-+|..+|+.++.. |.+|++.... +-..-+|.-+|+. +.+.+++++.+|+|+.+
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~d-p~~al~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEID-PINALQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecc-cchhHHhhcCceE-----eeehhhhhhhccEEEec
Confidence 35778 9999999999999999999988 9999877654 3334556678998 57899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+..... +=.+.++.||+|++|.-+..|.
T Consensus 87 TGn~~v--I~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCIDI--ILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSCS--BCHHHHTTCCTTEEEEECSSST
T ss_pred CCCccc--hhHHHHHhccCCeEEEEecccc
Confidence 986433 1135678899999998776664
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.39 E-value=5.8e-07 Score=84.38 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=76.8
Q ss_pred cCCHHhhhccCCEEEEeecchH-HHHHHHHHHhcCCCCcEEEEeccchhh---hhhcccccCCCCccEEEeccCCChhhH
Q 013877 169 LGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (434)
Q Consensus 169 ~~~~~Ea~~~ADiViLavpd~a-~~~vl~eI~~~Lk~g~iL~~s~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (434)
+.|+.|++++||+||+++|+.. ..+++++|.+++++|++|++++..... .+.+ ..-+++++|+..||..+...
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a~pe~- 208 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGCVPEM- 208 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSSCTTT-
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccCcCcc-
Confidence 5789999999999999999755 468999999999999999988775432 2222 12356899999999553222
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 013877 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (434)
Q Consensus 245 r~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~ 287 (434)
.|...++ ....+.+..+.++.++..+|..
T Consensus 209 ------------~g~~li~--~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 209 ------------KGQVYIA--EGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ------------CCCEEEE--ESSSCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccceEEe--cCCCCHHHHHHHHHHHHHHCCC
Confidence 2444433 3457889999999999999974
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.38 E-value=3.7e-07 Score=81.03 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=76.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
-+.| |++.|+|||-.|..+|+.+|.. |-+|+|.... +-..-+|.-+||. +.+.+|+++.+|+||.+|
T Consensus 20 ~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~D-Pi~alqA~mdGf~-----v~~~~~a~~~aDi~vTaT 86 (163)
T d1v8ba1 20 LISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDKGDFFITCT 86 (163)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTTCSEEEECC
T ss_pred eecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecC-chhhHHHHhcCCc-----cCchhHccccCcEEEEcC
Confidence 4778 9999999999999999999998 9998877554 4334556668998 579999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
....+. -.+.+..||+|++|.-+..|.
T Consensus 87 Gn~~vI--~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 87 GNVDVI--KLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp SSSSSB--CHHHHTTCCTTCEEEECSSTT
T ss_pred CCCccc--cHHHHHHhhCCeEEEeccccc
Confidence 975521 125678899999999777675
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.38 E-value=1.1e-06 Score=79.04 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=95.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------------C---CCcCCHHh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------N---GTLGDIYE 174 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~---~~~~~~~E 174 (434)
|||+|||+|-+|.++|..|.+. |++|+ +++.+++..+... .|..+- . ....+..+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln-~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~ 72 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLIN-QGKSPIVEPGLEALLQQGRQTGRLSGTTDFKK 72 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHH-TTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhc-ccCCcccchhhhhhhhhhhcccccccCCCHHH
Confidence 6899999999999999999999 99985 6666554433322 121100 0 01457889
Q ss_pred hhccCCEEEEeecch----------HHHHHHHH---HHhcCCCCcEEEEeccchhhh--------hh-cccccCCCCccE
Q 013877 175 TISGSDLVLLLISDA----------AQADNYEK---IFSCMKPNSILGLSHGFLLGH--------LQ-SMGLDFPKNIGV 232 (434)
Q Consensus 175 a~~~ADiViLavpd~----------a~~~vl~e---I~~~Lk~g~iL~~s~G~~i~~--------~~-~~~i~~~~di~V 232 (434)
++++||+|++|+|.. ....+.+. +...++++++|++-+-+..+. ++ ........++.
T Consensus 73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~- 151 (202)
T d1mv8a2 73 AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFG- 151 (202)
T ss_dssp HHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBE-
T ss_pred HHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccccccccc-
Confidence 999999999999842 12334443 445566788776654332111 11 11122233433
Q ss_pred EEeccC--CChhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCccccc
Q 013877 233 IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (434)
Q Consensus 233 I~v~Pn--~pg~~vr~ly~~G~~~~G~Gv~aliav~qdvsg~a~e~a~~la~aiG~~~~iet 292 (434)
+..+|- .+|..+++.... +.++ +.. .+.+..+.++++...+..+ ++.+
T Consensus 152 ~~~~PE~~~~G~a~~d~~~~---------~~iV-iG~-~~~~~~~~~~~ly~~i~~~-ii~~ 201 (202)
T d1mv8a2 152 VGTNPEFLRESTAIKDYDFP---------PMTV-IGE-LDKQTGDLLEEIYRELDAP-IIRK 201 (202)
T ss_dssp EEECCCCCCTTSHHHHHHSC---------SCEE-EEE-SSHHHHHHHHHHHTTSSSC-EEEE
T ss_pred chhhhhhhcccchhhhhcCC---------CeEE-EEe-CCHHHHHHHHHHHHhcCCC-eEec
Confidence 557774 556665444332 2222 121 2568888999999888753 4433
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.25 E-value=1.5e-06 Score=76.18 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=71.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.+++ ++|.|||.|-||..++++|... |. ++.+.+|...+..+.+.+.|... ....+..+.+.++|+||.|
T Consensus 21 ~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~a 91 (159)
T d1gpja2 21 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVSA 91 (159)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEEC
T ss_pred Cccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEEe
Confidence 4677 9999999999999999999998 87 68889998777788888877653 1245677889999999999
Q ss_pred ecchH---HHHHHHHHHhcCCCC--cEEEEe
Q 013877 186 ISDAA---QADNYEKIFSCMKPN--SILGLS 211 (434)
Q Consensus 186 vpd~a---~~~vl~eI~~~Lk~g--~iL~~s 211 (434)
|+... ..+.++.....-+.+ .+++|.
T Consensus 92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 92 TAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp CSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 98442 245665543322222 355654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.06 E-value=1.5e-05 Score=66.49 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH-HcCccccCCCcCCH---Hhh-hccCCEEEEee
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~---~Ea-~~~ADiViLav 186 (434)
|+|.|+|+|.+|..+++.|.+. |++|++.+.. +...+.+. +.|...-.|...+. .++ ++++|.++.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d-~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCC-hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 6899999999999999999999 9998766544 44444444 33543211222232 222 68899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEec
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~ 212 (434)
++....-+...+...+.+..+|..++
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEec
Confidence 98765444444555566667776544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=8.7e-06 Score=70.22 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEE-ecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
.||||||+|.+|.- ++..++.. .+++++.. ++...+..+.+.+.++.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 48999999999975 56666654 15665543 344455556667777654 567888899999999999999
Q ss_pred HHHHHHHHHHh
Q 013877 190 AQADNYEKIFS 200 (434)
Q Consensus 190 a~~~vl~eI~~ 200 (434)
.+.++......
T Consensus 73 ~h~~~~~~al~ 83 (164)
T d1tlta1 73 SHFDVVSTLLN 83 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred hcccccccccc
Confidence 99988876543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.92 E-value=1.5e-05 Score=68.91 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=58.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViLavpd~ 189 (434)
.||||||+|.+|.. +...|++. .++++++.++...+....+.+.+... ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 58999999999976 56666654 14566655555455566666777642 1456777765 679999999999
Q ss_pred HHHHHHHHHHh
Q 013877 190 AQADNYEKIFS 200 (434)
Q Consensus 190 a~~~vl~eI~~ 200 (434)
.+.++......
T Consensus 74 ~H~~~~~~al~ 84 (167)
T d1xeaa1 74 VHSTLAAFFLH 84 (167)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99998877554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.89 E-value=1.7e-05 Score=65.73 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CCCcCC-HHhh-hccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGD-IYET-ISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~~~~-~~Ea-~~~ADiViLavp 187 (434)
|++.|||+|.+|..+|+.|.+. |++|++.+. +++..+.+...|...- |.+-.+ ..++ +++||.|+++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid~-d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDI-NEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEES-CHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEecC-cHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6899999999999999999999 998866554 4555666666665321 211112 2333 789999999999
Q ss_pred chHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 188 DAAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 d~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
+.....++ ..+...+....++.-++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred chHHhHHHHHHHHHHcCCCcEEeecc
Confidence 77665443 33445454445555443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.84 E-value=2.4e-05 Score=68.45 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=61.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||||||+|.+|..++..|+.. .+++++...+.+ +++.+.+.+.++........+.+++++ +.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 4899999999999999999865 145655333433 344555666675421112468888874 57999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 013877 189 AAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
..+.++..... +.|.-|.
T Consensus 77 ~~h~~~~~~~l---~~g~~v~ 94 (184)
T d1ydwa1 77 SLHVEWAIKAA---EKGKHIL 94 (184)
T ss_dssp GGHHHHHHHHH---TTTCEEE
T ss_pred hhhcchhhhhh---hccceee
Confidence 99988876553 4455443
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.80 E-value=2e-05 Score=66.84 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--CC--CcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NG--TLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~--~~~~~~Ea~~~ADiViLavp 187 (434)
|+|.|||+|.||.++|++|.+. |++|+|.+|+..+..+.+...+.... .. ......+.+...|+++.++|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 8999999999999999999999 99999999886665555554432110 00 01234567888999999999
Q ss_pred chHHHHHHHHH
Q 013877 188 DAAQADNYEKI 198 (434)
Q Consensus 188 d~a~~~vl~eI 198 (434)
......+....
T Consensus 77 ~~~~~~~~~~~ 87 (182)
T d1e5qa1 77 YTFHATVIKSA 87 (182)
T ss_dssp GGGHHHHHHHH
T ss_pred chhhhHHHHHH
Confidence 87766655443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=3.9e-05 Score=67.24 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=55.5
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEE-EecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 113 kIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
||||||+|.+|.. ++..+++. . -.++++. .++..++....+...|... ...+.+|+++ +.|+|++++|+
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~-~---~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHHhC-C---CCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeeccccc
Confidence 7899999999986 67777763 0 0245543 3343334444455566542 1568899886 47999999999
Q ss_pred hHHHHHHHHHHh
Q 013877 189 AAQADNYEKIFS 200 (434)
Q Consensus 189 ~a~~~vl~eI~~ 200 (434)
..+.+++.....
T Consensus 78 ~~h~~~~~~al~ 89 (181)
T d1zh8a1 78 ELNLPFIEKALR 89 (181)
T ss_dssp GGHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 999988876544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.57 E-value=3.7e-05 Score=66.96 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=56.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
.||||||+|.||..++..|++. .+++++...+.+.+. ....++.. ..+..+...+.|+|++++|+..+
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence 4789999999999999999865 156654333332221 22233332 34667778899999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEE
Q 013877 192 ADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~iL~~ 210 (434)
.++... .|+.|.-+++
T Consensus 72 ~~~a~~---aL~aG~~vv~ 87 (170)
T d1f06a1 72 IPEQAP---KFAQFACTVD 87 (170)
T ss_dssp HHHHHH---HHTTTSEEEC
T ss_pred HHHHHH---HHHCCCcEEE
Confidence 776654 3566765543
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.47 E-value=0.00015 Score=62.16 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc----CccccCC-CcCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~-~~~~~~Ea~~~ADiViL 184 (434)
+||+|||.|.+|.++|..|... |+ ++.+.+...++....+.+. -+...+. ...+..+.+++||+|++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvi 80 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVI 80 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEE
Confidence 7999999999999999999988 76 5655554433333333321 1111000 01233477889999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+..
T Consensus 81 tag 83 (148)
T d1ldna1 81 CAG 83 (148)
T ss_dssp CCS
T ss_pred ecc
Confidence 754
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.40 E-value=0.00011 Score=61.55 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=54.1
Q ss_pred CEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC---ccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgII-G~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 689999 8999999999999999 9999999887554333333211 110 0012345556667788888888
Q ss_pred chHHHHHHHH
Q 013877 188 DAAQADNYEK 197 (434)
Q Consensus 188 d~a~~~vl~e 197 (434)
.....+....
T Consensus 74 ~~~~~~~~~~ 83 (212)
T d1jaya_ 74 WEHAIDTARD 83 (212)
T ss_dssp HHHHHHHHHH
T ss_pred eeccchHHHH
Confidence 7777765543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.37 E-value=0.00045 Score=59.53 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH-------cCccccCCCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|..|.++|..|..+ ++ ++++.+....+....+.+ .+.........+.++++++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 8999999999999999988887 76 665554443333333332 111100001245678899999999
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 977
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.34 E-value=0.00015 Score=63.80 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=47.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc--------------C-CCcCCHHhhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------N-GTLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~-~~~~~~~Ea~ 176 (434)
|||+|||+|-+|.++|..+ .. |++|+ |.+.+++..+... .|..+- . ....+..++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V~-g~Din~~~v~~l~-~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEVT-IVDILPSKVDKIN-NGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEEE-EECSCHHHHHHHH-TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcEE-EEECCHHHHHHHh-hcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 6899999999999999877 46 89874 7777665544433 232110 0 0123556678
Q ss_pred ccCCEEEEeecch
Q 013877 177 SGSDLVLLLISDA 189 (434)
Q Consensus 177 ~~ADiViLavpd~ 189 (434)
.++|+|+++||..
T Consensus 72 ~~~~ii~v~vpt~ 84 (196)
T d1dlja2 72 KEAELVIIATPTN 84 (196)
T ss_dssp HHCSEEEECCCCC
T ss_pred hccccccccCCcc
Confidence 8999999999843
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.0001 Score=64.04 Aligned_cols=98 Identities=20% Similarity=0.028 Sum_probs=61.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHh-hhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E-a~~~ADiViL 184 (434)
..++| |+|.|||.|-.+.|++..|.+. |.+|.+.+|+.++..+.+....-.. .-...+..+ ...++|+||.
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~-~~~~~~~~~~~~~~~dliIN 85 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTG-SIQALSMDELEGHEFDLIIN 85 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGS-SEEECCSGGGTTCCCSEEEE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhcc-cccccccccccccccceeec
Confidence 35678 9999999999999999999998 8888888887665555554422110 000122222 3467899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||.....+....-...++++.++.++
T Consensus 86 ~Tp~G~~~~~~~~~~~~~~~~~~v~D~ 112 (170)
T d1nyta1 86 ATSSGISGDIPAIPSSLIHPGIYCYDM 112 (170)
T ss_dssp CCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred ccccCcccCCCCCcHHHhccCcEEEEe
Confidence 999876532211111234555555533
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.28 E-value=0.00025 Score=64.16 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEE-ecCCchhHHHHHHcCccccC-CCcCCHHhhhc--cCCEEEEee
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~~-~~~~~~~Ea~~--~ADiViLav 186 (434)
-+|||||+|.+|.. ++..++.. .+++|+.. ++..++....+++.|+.... ....|.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 48999999999975 45555543 14566533 34434555666677764211 01457888886 579999999
Q ss_pred cchHHHHHHHHHH
Q 013877 187 SDAAQADNYEKIF 199 (434)
Q Consensus 187 pd~a~~~vl~eI~ 199 (434)
|+..+.++..+..
T Consensus 109 p~~~H~~~~~~al 121 (221)
T d1h6da1 109 PNSLHAEFAIRAF 121 (221)
T ss_dssp CGGGHHHHHHHHH
T ss_pred chhhhhhHHHHhh
Confidence 9999998876644
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.28 E-value=0.00022 Score=61.90 Aligned_cols=92 Identities=22% Similarity=0.212 Sum_probs=58.8
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCC-cEEEE-EecC-CchhHHHHHHcCccccCCCcCCHHhhh-----ccCCEE
Q 013877 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSD-IVVKV-GLRK-GSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrds~~~~~~G-~~Viv-g~r~-~~~s~~~A~~~G~~~~~~~~~~~~Ea~-----~~ADiV 182 (434)
.||||||+|.+|.- +.+.|++. . .+++. ..++ .++..+.|++.|+... ..+.++.. .+.|+|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~------~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiV 75 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA------KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFV 75 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC------SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC------CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEE
Confidence 48999999999985 56666655 3 34433 3333 3345677888888642 22233332 367999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+++||...+.+-... ...++.|..+++-+.
T Consensus 76 f~ATpag~h~~~~~~-~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 76 FDATSASAHVQNEAL-LRQAKPGIRLIDLTP 105 (157)
T ss_dssp EECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred EEcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence 999998887653322 223578888886654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=8.5e-05 Score=58.50 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~ 150 (434)
.|+| |||.|||+|..|.+.|+.|.+. |.+|++.+++.
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRM 38 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSS
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCc
Confidence 4789 9999999999999999999999 99998887753
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.18 E-value=0.00017 Score=70.24 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=65.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEe
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-++++|||+|.|+..+++.+..-+ ++ +|.++.|..++..+.+.+ .|+.. ..+.+.+++++.||+|+.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t~ 200 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTV 200 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEEC
T ss_pred CceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceeec
Confidence 389999999999999999998652 55 677777765544444433 24432 1256899999999999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
|+......+++ ...++||..|.-+.++
T Consensus 201 Tas~s~~Pv~~--~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 201 TADKAYATIIT--PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp CCCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred cccCCCCcccc--hhhcCCCCEEeecccc
Confidence 97644333332 2457999887655544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.18 E-value=0.00043 Score=59.26 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=43.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--CccccCC----CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEENG----TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~~~~----~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. .... .. ...+. +.+++||+|+
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~-~~~~~~~~~d~-~~~~~adivv 77 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAF-TAPKKIYSGEY-SDCKDADLVV 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGG-SCCCEEEECCG-GGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccc-cCCceEeeccH-HHhccccEEE
Confidence 7999999999999999999988 75 6655554433333333221 1100 00 12344 4568999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++..
T Consensus 78 itag 81 (146)
T d1ez4a1 78 ITAG 81 (146)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9854
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.15 E-value=5.9e-05 Score=66.11 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
.++| ++|.|||.|-.+.+++..|.+. +-+|.|.+|+.++..+.+...+....-......+....++|+||.++
T Consensus 15 ~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~t 87 (171)
T d1p77a1 15 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINAT 87 (171)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECC
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecc
Confidence 5678 9999999999999999999876 67898999986665556555432100000111222457899999999
Q ss_pred cchHH
Q 013877 187 SDAAQ 191 (434)
Q Consensus 187 pd~a~ 191 (434)
|....
T Consensus 88 p~g~~ 92 (171)
T d1p77a1 88 SAGLS 92 (171)
T ss_dssp CC---
T ss_pred ccccc
Confidence 97754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.14 E-value=0.0011 Score=53.60 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH-HHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| ++|.|||.|.+|.+-++.|.++ |.+|++......+.. ..+.+.++..... ..+ ++-+.++++|+.
T Consensus 8 l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~-~~~-~~dl~~~~lv~~ 78 (113)
T d1pjqa1 8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEG-PFD-ETLLDSCWLAIA 78 (113)
T ss_dssp ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEES-SCC-GGGGTTCSEEEE
T ss_pred EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeecc-CCC-HHHhCCCcEEee
Confidence 36889 9999999999999999999999 988887765544333 3333323322111 122 345778999999
Q ss_pred eecchHHH-HHHHHH
Q 013877 185 LISDAAQA-DNYEKI 198 (434)
Q Consensus 185 avpd~a~~-~vl~eI 198 (434)
++.+.... .+++..
T Consensus 79 at~d~~~n~~i~~~a 93 (113)
T d1pjqa1 79 ATDDDTVNQRVSDAA 93 (113)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 99998775 454443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.13 E-value=0.0007 Score=57.59 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=42.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCccccCC--CcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~~~--~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|.+|.++|..|... ++ ++.+.+....+....+.+ ++...... ......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 6899999999999999999988 66 666665554443344433 22110000 012234678899999998
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.07 E-value=0.00067 Score=61.18 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=54.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc-cCCEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~-~ADiViL 184 (434)
+.|+| +||+|.|+|++|..+|+.|.+. |.+|++.+ .+......+...|... .+.+++.. +||+++-
T Consensus 23 ~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d-~d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~iP 89 (201)
T d1c1da1 23 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVAD-TDTERVAHAVALGHTA-----VALEDVLSTPCDVFAP 89 (201)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEec-chHHHHHHHHhhcccc-----cCccccccccceeeec
Confidence 46899 9999999999999999999999 99887554 4455667777777763 45666655 7898886
Q ss_pred eecch
Q 013877 185 LISDA 189 (434)
Q Consensus 185 avpd~ 189 (434)
|--..
T Consensus 90 cA~~~ 94 (201)
T d1c1da1 90 CAMGG 94 (201)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 64433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.03 E-value=0.0012 Score=56.51 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=42.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc----CccccCCC-cCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENGT-LGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~~-~~~~~Ea~~~ADiViL 184 (434)
|||+|||.|.+|.++|..|... |+ ++++.+....+....+.+. .+...+.. ..+..+.+++||+|++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEE
Confidence 7999999999999999999887 65 5554443333322222211 11100000 1122356899999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+..
T Consensus 76 taG 78 (146)
T d1hyha1 76 TLG 78 (146)
T ss_dssp CCS
T ss_pred ecc
Confidence 854
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.02 E-value=0.00055 Score=62.27 Aligned_cols=83 Identities=8% Similarity=0.143 Sum_probs=54.4
Q ss_pred CEEEEEcccch----HHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEE
Q 013877 112 NQIGVIGWGSQ----GPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~m----G~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViL 184 (434)
.||||||+|.+ +..+..+++.. ..+++++...+.+ .+..+.+.+.++.. .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 58999999985 45566666653 1145665333433 34455566666542 112468888875 5789999
Q ss_pred eecchHHHHHHHHHH
Q 013877 185 LISDAAQADNYEKIF 199 (434)
Q Consensus 185 avpd~a~~~vl~eI~ 199 (434)
++|+..+.++.....
T Consensus 92 ~tp~~~h~~~~~~al 106 (237)
T d2nvwa1 92 SVKVPEHYEVVKNIL 106 (237)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHH
Confidence 999999998776544
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.02 E-value=0.00038 Score=60.36 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=51.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++ ++|.|||.|-.|.|++..|++. |. +|.|.+|+.++....+...+... .... -..++|+||.|||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 56 8999999999999999999998 87 78888887666666666656542 2221 2357899999999
Q ss_pred ch
Q 013877 188 DA 189 (434)
Q Consensus 188 d~ 189 (434)
..
T Consensus 83 iG 84 (167)
T d1npya1 83 IG 84 (167)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.00 E-value=0.0016 Score=55.17 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc--CccccC--C---CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--GFTEEN--G---TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~--G~~~~~--~---~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.+|.++|..|... ++ +++..+...+.....+.+. .....+ . ...+. +.+++||+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEE
Confidence 6999999999999999999887 66 7655554444434333331 110000 0 02344 4578999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9984
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.99 E-value=0.0018 Score=55.13 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=43.0
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHcC--cccc--CC--CcCCHHhhhccCCEEE
Q 013877 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG--FTEE--NG--TLGDIYETISGSDLVL 183 (434)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~G--~~~~--~~--~~~~~~Ea~~~ADiVi 183 (434)
||+|||+ |.+|.++|..|... |+ ++++.+.. . ....+.+.- .... .. ...+..|++++||+|+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiDi~-~-~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivV 73 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIA-H-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVV 73 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESS-S-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred eEEEECCCChHHHHHHHHHHhC------CccceEEEEecc-c-cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEE
Confidence 8999995 99999999999988 76 45444433 2 233333321 1000 00 1235678899999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.-
T Consensus 74 itag 77 (144)
T d1mlda1 74 IPAG 77 (144)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9844
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.98 E-value=4e-05 Score=66.49 Aligned_cols=78 Identities=14% Similarity=0.257 Sum_probs=49.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecch
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd~ 189 (434)
.+|||||+|.||..++.+|.+. .+. ..-.++..+.. + +.+...++. ..+.+|++. +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~-~~~--~~~~~~~~~~~-~--~~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDP-RSA--AFLNLIGFVSR-R--ELGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSH-HHH--TTEEEEEEECS-S--CCCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhC-CCC--cEEEEEeccch-H--HHHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 4899999999999999988764 110 11112232221 1 111122333 357888876 568999999999
Q ss_pred HHHHHHHHHHh
Q 013877 190 AQADNYEKIFS 200 (434)
Q Consensus 190 a~~~vl~eI~~ 200 (434)
.+.++......
T Consensus 77 ~H~~~~~~al~ 87 (172)
T d1lc0a1 77 SHEDYIRQFLQ 87 (172)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99988776544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.96 E-value=0.0015 Score=56.04 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHc--C--ccccCCC--cCCHHhhhccCCEEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G--FTEENGT--LGDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~--G--~~~~~~~--~~~~~Ea~~~ADiViL 184 (434)
.||+|||.|..|.++|..|..+ ++ ++.+.+....+....+.+. . +...+.. ..+..+.+++||+|++
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvi 77 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIV 77 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEE
Confidence 6999999999999999988877 66 6555554444433333321 1 1000000 1234577899999999
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
+.-
T Consensus 78 tag 80 (150)
T d1t2da1 78 TAG 80 (150)
T ss_dssp CCS
T ss_pred ecc
Confidence 865
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.96 E-value=0.0014 Score=58.01 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hHHHHHHcC-----------------ccccCCCcCCH
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAG-----------------FTEENGTLGDI 172 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~~~A~~~G-----------------~~~~~~~~~~~ 172 (434)
|-||||.|+|.||+.+++.+.++ .+++++..++..+. ........+ +.. ..+.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v----~g~~ 71 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV----AGTV 71 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC----CCCH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec----CCch
Confidence 46899999999999999999876 14676555554332 222222222 221 3456
Q ss_pred HhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 173 ~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++..++|+|+-|||.....+-.+ .+++.|+=++++
T Consensus 72 ~~~~~~vDiViecTG~f~~~e~a~---~hl~~G~KvIi~ 107 (178)
T d1b7go1 72 EDLIKTSDIVVDTTPNGVGAQYKP---IYLQLQRNAIFQ 107 (178)
T ss_dssp HHHHHHCSEEEECCSTTHHHHHHH---HHHHTTCEEEEC
T ss_pred hhhhhcCCEEEECCCCcCCHHHHH---HHHHcCCEEEEE
Confidence 777889999999999866655443 344455434444
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.96 E-value=0.00095 Score=55.94 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=66.4
Q ss_pred cCCCCEEEEEcc----cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 108 FNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 108 ~~g~kkIgIIG~----G~mG~A~A~nLrds~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
|.- ++|+|||. |..|..+.+||++. | .+|+-.+.+... =.|... +.++.|+=..-|++
T Consensus 6 f~P-ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~~~------i~G~~~----y~sl~dlp~~vDlv 68 (129)
T d2csua1 6 FNP-KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEEE------VQGVKA----YKSVKDIPDEIDLA 68 (129)
T ss_dssp TSC-SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCSE------ETTEEC----BSSTTSCSSCCSEE
T ss_pred CCC-CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCccc------cCCeEe----ecchhhcCCCCceE
Confidence 444 89999996 88999999999876 4 466544433211 146664 66788877789999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
++++|+....+++++.... .-..++++++||.
T Consensus 69 vi~vp~~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 69 IIVVPKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp EECSCHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred EEecChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 9999999999999986543 2344788899984
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.95 E-value=0.0026 Score=53.99 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=43.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
+||+|||.|.+|.++|..|..+ |+ ++.+.+...++.+..+.+. .....-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 6999999999999999999887 65 5555444433333332211 11000000224 4688999999
Q ss_pred EEeec
Q 013877 183 LLLIS 187 (434)
Q Consensus 183 iLavp 187 (434)
+++..
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99864
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0039 Score=53.18 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=63.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh--------cc
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SG 178 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~--------~~ 178 (434)
.| .+|.|+|.|.+|...++-++.. |. +|++.. .++...+.|++.|+..- +....+..+.. ..
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d-~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTD-LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEE-SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEecc-CCHHHHHHHHHhCCcccccccccccccccccccccCCCC
Confidence 45 8999999999999999999988 87 565544 44666889999987421 11112333332 25
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+||-++.... .++.....+++|..+++.
T Consensus 98 ~Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 98 PEVTIECTGAEA---SIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred ceEEEeccCCch---hHHHHHHHhcCCCEEEEE
Confidence 899999998754 344455667888776654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.84 E-value=0.0013 Score=57.35 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=46.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cCccccCCC---cCCHHhhhcc
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENGT---LGDIYETISG 178 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~~~~---~~~~~Ea~~~ 178 (434)
..++. +||+|||+|.+|.++|..|... |+ ++++.+...+.....|.+ +........ .....+.+++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ 88 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN 88 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence 45556 8999999999999999999988 87 665555443333333322 111100000 1122466889
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|+++.
T Consensus 89 adiVVitA 96 (160)
T d1i0za1 89 SKIVVVTA 96 (160)
T ss_dssp CSEEEECC
T ss_pred ccEEEEec
Confidence 99999964
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.81 E-value=0.0012 Score=55.70 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=43.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc--C--ccccCC--CcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENG--TLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~~~--~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|.+|.++|..|..+ |+ ++.+.+....+....+... - +...+. ...+..+++++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 5899999999999999999987 65 6655554444333332221 0 000000 0124457789999999
Q ss_pred Eee
Q 013877 184 LLI 186 (434)
Q Consensus 184 Lav 186 (434)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 995
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.0021 Score=55.76 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHHc----CccccC--CCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEEN--GTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~--~~~~~~~Ea~~~ADiVi 183 (434)
.||+|||.|.+|.++|..|... |+ ++++.+....+....+.+. -+.... -...+ .+.+++||+|+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivv 92 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVI 92 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEE
Confidence 7999999999999999999988 76 5655544433332232221 111000 01224 45668999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++..
T Consensus 93 itag 96 (159)
T d2ldxa1 93 ITAG 96 (159)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9864
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.74 E-value=0.0012 Score=55.91 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=43.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
+||+|||.|++|.++|..|..+ ++ ++.+.+....+....+.+ ..+........+..+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6899999999999999999887 65 555444443333333332 11110000012235678999999998
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.70 E-value=0.0018 Score=57.77 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC---CCc-------------------
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTL------------------- 169 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~~~------------------- 169 (434)
-+|.|||.|..|..-++-.+.- |-+|.+.+.+ ....+..+..+-.... ...
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~-~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEecc-HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 5899999999999877776666 8888776654 4456666665531100 000
Q ss_pred ---CCHHhhhccCCEEEEee--cchHHHHHHH-HHHhcCCCCcEEEEec
Q 013877 170 ---GDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (434)
Q Consensus 170 ---~~~~Ea~~~ADiViLav--pd~a~~~vl~-eI~~~Lk~g~iL~~s~ 212 (434)
..+.+.+++||+||-++ |-...+.++. +....||||++|+|.+
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 01334588999999654 4433345554 6888999999999886
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.67 E-value=0.00054 Score=60.47 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=64.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC-cccc--CCCcCCHHhhhccCCEEEEeec-
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE--NGTLGDIYETISGSDLVLLLIS- 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~--~~~~~~~~Ea~~~ADiViLavp- 187 (434)
-|+.|||.|.-|..-++..+.- |-+|.+.+.+.+ ..+..+... -..+ ......+++.+++||+||-++-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~~~-~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVE-RLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCcHH-HHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 6999999999999888888877 888887766533 344433332 1110 0011236788999999998764
Q ss_pred -chHHHHHH-HHHHhcCCCCcEEEEec
Q 013877 188 -DAAQADNY-EKIFSCMKPNSILGLSH 212 (434)
Q Consensus 188 -d~a~~~vl-~eI~~~Lk~g~iL~~s~ 212 (434)
-...+.++ ++....||||++|+|.+
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcccCeeecHHHHhhcCCCcEEEEee
Confidence 33334455 46788999999999885
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.63 E-value=0.00083 Score=56.71 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=79.4
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|+|+|||. +..|..+.++|++. |+++....-+. +. ..-.|... ..+..|+-..-|+|++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~-~~---~~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRF-QG---EELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGG-TT---SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecc-cc---ceeeceec----ccchhhccCCCceEEEecc
Confidence 88999996 68999999999999 99876654321 10 01145553 5677777777899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHh
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (434)
+....+++++.... ... .+.+..|+.-..+.+ +.-..+++|| +||++.-+-.++|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k-~i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPG-LVWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCS-CEEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCC-eEEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 99999999986543 232 456677764211111 1112466666 78898777666653
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.0027 Score=53.03 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=64.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchH
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a 190 (434)
+||+|+|+ |.||.++++-+.+. |++++.+.+.+. .+.+.++|+||=-+.|+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~~---------------------~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVNG---------------------VEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETTE---------------------EEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCCc---------------------HHHhccCCEEEEecCHHH
Confidence 58999997 99999999988887 888766554211 123457899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCC
Q 013877 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (434)
Q Consensus 191 ~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~p 240 (434)
..+.++....+=+| +|+=+.|++-..++. .....+.++++ .+||+|
T Consensus 54 ~~~~l~~~~~~~~p--~ViGTTG~~~~~~~~-i~~~ak~~pv~-~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRAG--LVLGTTALKEEHLQM-LRELSKEVPVV-QAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTCE--EEECCCSCCHHHHHH-HHHHTTTSEEE-ECSCTH
T ss_pred HHHHHHHHHhcCCC--EEEEcCCCCHHHHHH-HHHHHhhCCEE-eeeccC
Confidence 98888765443222 555567886433321 11123344444 677776
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00087 Score=58.54 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchh---HHHHHHcC----ccccCCCcC---CHHh
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS---FAEARAAG----FTEENGTLG---DIYE 174 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s---~~~A~~~G----~~~~~~~~~---~~~E 174 (434)
..++| ++|.|||+|-.|.+++..|.+. |. ++.+.+|..++. ...+.+.+ ....-.... +..+
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 35788 9999999999999999999998 77 677788864422 22222211 110000011 2345
Q ss_pred hhccCCEEEEeecchHH
Q 013877 175 TISGSDLVLLLISDAAQ 191 (434)
Q Consensus 175 a~~~ADiViLavpd~a~ 191 (434)
....+|+||.++|....
T Consensus 87 ~~~~~diiIN~Tp~G~~ 103 (182)
T d1vi2a1 87 ALASADILTNGTKVGMK 103 (182)
T ss_dssp HHHTCSEEEECSSTTST
T ss_pred hhcccceeccccCCccc
Confidence 67899999999996543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.56 E-value=0.0024 Score=54.95 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=62.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhcc-----CCE
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SDL 181 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~~-----ADi 181 (434)
-.| .+|.|+|+|.+|...++-++.. |..+++..+.++...+.+++.|...- +....+..+.+++ .|+
T Consensus 27 ~~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 27 TPA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CTT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 346 8999999999999999999988 88666665555666888999886421 1112344444432 699
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
||-++..... ++.....++++-.+++.
T Consensus 100 vid~~G~~~~---~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 100 ALESTGSPEI---LKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEECSCCHHH---HHHHHHTEEEEEEEEEC
T ss_pred EEEcCCcHHH---HHHHHhcccCceEEEEE
Confidence 9999885433 33334456666655543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.54 E-value=0.0052 Score=51.94 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=62.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
++|+|||. +..|..++++|++. |++|+-.+.+ .. .=.|... ..++.|+-..-|+|++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~-~~-----~i~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPK-YE-----EVLGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CS-----EETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCc-cc-----ccCCCcc----cccccccCccceEEEEEeC
Confidence 89999995 57899999999999 9986543332 11 1246664 6678887778999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEe-ccch
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLS-HGFL 215 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s-~G~~ 215 (434)
+..+.++++++... ... .+.+- .+++
T Consensus 84 ~~~~~~~~~e~~~~-g~k-~v~~~~G~~~ 110 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAK-VVWFQYNTYN 110 (139)
T ss_dssp HHHHHHHHHHHHHH-TCS-EEEECTTCCC
T ss_pred HHHHHHHHHHHHHh-CCC-EEEEeccccC
Confidence 99999999986553 233 44444 4454
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.49 E-value=0.0018 Score=61.86 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=62.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHH---HHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~---~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
-++++|||.|.|+..+++.|.... .+ +|.|+.|..++..+ .....++.. ..+.++++.+||+|+.+|
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT 195 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTT 195 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECC
T ss_pred ccEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEec
Confidence 378999999999999999998751 34 67777776443332 223344443 456788899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+-.. .+++ ...++||+.|.....+
T Consensus 196 ~s~~--P~~~--~~~l~~G~hv~~iGs~ 219 (320)
T d1omoa_ 196 PSRK--PVVK--AEWVEEGTHINAIGAD 219 (320)
T ss_dssp CCSS--CCBC--GGGCCTTCEEEECSCC
T ss_pred cCcc--cccc--hhhcCCCCeEeecCCc
Confidence 8421 1221 2457899887755544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.46 E-value=0.011 Score=49.88 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=61.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc---CCCcCCHHh---hh-----
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI----- 176 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---~~~~~~~~E---a~----- 176 (434)
-.| .+|.|+|.|.+|...++-++.. |.+|++..+. +...+.|++.|.... +....+..+ .+
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~~~-~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTARS-PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccchH-HHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 345 8999999999999999999888 8887765544 555788888886320 111112222 22
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
..+|+||-++.... .++.....++++..|+..
T Consensus 97 ~g~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGNEK---CITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCChH---HHHHHHHHHhcCCceEEE
Confidence 24799999998643 344444567777776644
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.43 E-value=0.0019 Score=54.96 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=43.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ccccCCC--cCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENGT--LGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~~~--~~~~~Ea~~~ADiVi 183 (434)
.||+|||.|++|.+.|..|..+ |+ ++++.+....+....+.+ +. +.. ... ..+..+.+++||+|+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~i~~~~~~~~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYP-TVSIDGSDDPEICRDADMVV 74 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGST-TCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCC-CceeecCCCHHHhhCCcEEE
Confidence 5899999999999999999988 76 565544443333222221 11 110 000 122345688999999
Q ss_pred Eeec
Q 013877 184 LLIS 187 (434)
Q Consensus 184 Lavp 187 (434)
++.-
T Consensus 75 itaG 78 (143)
T d1llda1 75 ITAG 78 (143)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9854
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.36 E-value=0.0054 Score=50.19 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=56.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|+|+|||. |..|..+.++|++. |++|+-.+.+ .+. =.|... ..++.|+-..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~pVnP~-~~~-----i~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPN-YDE-----IEGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CSE-----ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEEEccc-ccc-----ccCccc----cccchhccccceEEEEEeC
Confidence 78999995 57799999999999 9986543332 221 146664 5678887778899999999
Q ss_pred chHHHHHHHHHHh
Q 013877 188 DAAQADNYEKIFS 200 (434)
Q Consensus 188 d~a~~~vl~eI~~ 200 (434)
+....++++++..
T Consensus 66 ~~~~~~~l~~~~~ 78 (116)
T d1y81a1 66 PKVGLQVAKEAVE 78 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.28 E-value=0.0057 Score=50.84 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc------hhHHHHHH----cCcccc
Q 013877 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEARA----AGFTEE 165 (434)
Q Consensus 106 ~~~~g~kkIgIIG~----------G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~------~s~~~A~~----~G~~~~ 165 (434)
+.+++ +||+|+|+ ++....++..|.+. |.+|.+.+..-+ ........ .+..
T Consensus 9 ~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-- 79 (136)
T d1mv8a3 9 TSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL-- 79 (136)
T ss_dssp TTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT--
T ss_pred HhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce--
Confidence 45667 99999997 67888999999988 998876653100 00111110 1111
Q ss_pred CCCcCCHHhhhccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 166 ~~~~~~~~Ea~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.+.+..++++++|+|+++++.....+ +...++++++|.+.-|+
T Consensus 80 --~~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 80 --LVSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp --BCSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSC
T ss_pred --eehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCC
Confidence 14689999999999999999887654 34456778889998776
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.011 Score=49.43 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=50.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh---HHHHHHcCccccCCCcCCHH----hhhccCCEEEEe
Q 013877 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (434)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLa 185 (434)
.|-|+|||..|..+++.|.+. |.++++......+. .+.....|+..-.|...+.+ .-+++||.|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 589999999999999999998 98877765543332 23333456533222223322 236789999999
Q ss_pred ecchHHH
Q 013877 186 ISDAAQA 192 (434)
Q Consensus 186 vpd~a~~ 192 (434)
+++....
T Consensus 79 ~~~d~~n 85 (153)
T d1id1a_ 79 SDNDADN 85 (153)
T ss_dssp SSCHHHH
T ss_pred cccHHHH
Confidence 9987664
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0079 Score=47.66 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCEEEEEcccchH-HHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec-c
Q 013877 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-D 188 (434)
Q Consensus 111 ~kkIgIIG~G~mG-~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp-d 188 (434)
+++|=|||.|=.| .++|+-|++. |++|...+.......+..++.|+... .....+-+++.|+|+...- +
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECCCcC
Confidence 3899999999999 6779999999 99987666655556677777898652 3344556788998877533 2
Q ss_pred hHHHHHH
Q 013877 189 AAQADNY 195 (434)
Q Consensus 189 ~a~~~vl 195 (434)
....++.
T Consensus 79 ~~npel~ 85 (96)
T d1p3da1 79 DDNPELV 85 (96)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 3344443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0092 Score=50.81 Aligned_cols=122 Identities=13% Similarity=0.085 Sum_probs=64.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCc--hhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
||||||||. |..|.-+.+.|.+.. .+-+ ++.....+.+ +............ .....+..+++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~---~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~----~~~~~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEER---DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ----DAFDLEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---GGGGSEEEEEESSSTTSBCCGGGTCCCBCE----ETTCHHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCC---CCCeeEEEEeeccccccccccccCCceeee----cccchhhhhcCcEEEEec
Confidence 689999997 999999998776430 0011 4433322211 1111111010110 111224568999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
|.....++.+++... ..+.+|++.++.. .. +-+|.++-|---.........+|
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss~f---------R~--~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAASSL---------RM--KDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSSTT---------TT--CTTEEEECHHHHHHHHHHHHHTT
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCccc---------cc--CCCCcEECCCcCHHHHHHHHHcC
Confidence 988887777776543 2223555555431 11 12566777744444444444444
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0022 Score=56.01 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=48.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCC---HHhhhccCCEEEEee
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~Ea~~~ADiViLav 186 (434)
||||.|+| .|.+|.++++.|.++ |++|++..|+.++... ....++....+...+ ..++++++|+||.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhccc-ccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 59999999 699999999999999 9999888876443211 111233211111233 457789999999987
Q ss_pred c
Q 013877 187 S 187 (434)
Q Consensus 187 p 187 (434)
.
T Consensus 76 g 76 (205)
T d1hdoa_ 76 G 76 (205)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.05 E-value=0.0018 Score=56.07 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=52.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccc-----cCCCcCCHHhhhccCC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-----ENGTLGDIYETISGSD 180 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-----~~~~~~~~~Ea~~~AD 180 (434)
..++| |+|.|||.|-.+.|++..|.+. | +|.|.+|..++..+.+....-.. ..-...+.......+|
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD 85 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence 34789 9999999999999999999765 6 78888887555444443221000 0000234555677899
Q ss_pred EEEEeecchH
Q 013877 181 LVLLLISDAA 190 (434)
Q Consensus 181 iViLavpd~a 190 (434)
+||.++|...
T Consensus 86 liIn~tp~g~ 95 (177)
T d1nvta1 86 IIINATPIGM 95 (177)
T ss_dssp EEEECSCTTC
T ss_pred hhccCCcccc
Confidence 9999999644
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.96 E-value=0.013 Score=51.10 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=56.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCccccCC--------------CcCCHHhh
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENG--------------TLGDIYET 175 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~--------------~~~~~~Ea 175 (434)
|+||||-|+|.||+.+.+.|.+. .+++++.-++.. ......+...++..... ...+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 68999999999999999988776 035655444433 22234444544321000 01245566
Q ss_pred hccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 176 ~~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.+++|+|+-|+|-....+-.+ ++++.|.-+++.
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~---~hl~~G~K~vi~ 108 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLK---MYKEKGIKAIFQ 108 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHH---HHHHTTCEEEEC
T ss_pred hcCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEE
Confidence 788999999999876554443 344455444443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.96 E-value=0.0041 Score=53.81 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=60.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc------cC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~------~A 179 (434)
-+| .+|.|+|+|-+|...++-++.. |. +|+ ..+.+++..+.+++.|.... +....+..+.+. ..
T Consensus 26 ~~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi-~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 26 EMG-SSVVVIGIGAVGLMGIAGAKLR------GAGRII-GVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHTT------TCSCEE-EECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEEcCCcchhhhhhhhhcc------cccccc-cccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCc
Confidence 356 8999999999999999999987 87 554 55555666889999986320 111123333332 27
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+||-++.... .++.....++++..+++.
T Consensus 98 D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 98 DRVIMAGGGSE---TLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred ceEEEccCCHH---HHHHHHHHHhcCCEEEEE
Confidence 99999998543 233334456677666644
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.87 E-value=0.0064 Score=55.72 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=52.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVL 183 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiVi 183 (434)
.+.|+| ++|+|-|+|++|..+|+.|.+. |.+|++.+.+...........|... .+.++. -.+|||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFA 101 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEec
Confidence 356899 9999999999999999999998 9887765544333333444456553 344443 34799988
Q ss_pred EeecchHH
Q 013877 184 LLISDAAQ 191 (434)
Q Consensus 184 Lavpd~a~ 191 (434)
-|--...+
T Consensus 102 PcA~~~~I 109 (230)
T d1leha1 102 PCALGAVL 109 (230)
T ss_dssp ECSCSCCB
T ss_pred cccccccc
Confidence 77554433
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0025 Score=55.33 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=69.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhH--HH-----HHHcCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF--AE-----ARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~--~~-----A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.||+|+|+ |.||+++++.+.+. .+++++.+.++. +... .. ....+... ..+.+++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 58999996 99999999988765 156665555432 1110 00 00112221 34667788999999
Q ss_pred EEeecchHHHHHHHHHHhcCCCCc-EEEEeccchhhhhhcccccCCCCccEEEeccCCCh
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg 241 (434)
|=-+.|....+.++....+ +. +|+=+.||+-..++. .....+++.+ ..+||++-
T Consensus 76 IDFs~p~~~~~~~~~a~~~---~~~~ViGTTG~~~~~~~~-i~~~a~~ipi-~~apN~Sl 130 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQA-IRDAAADIAI-VFAANFSM 130 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHH-HHHHTTTSCE-EECSCCCH
T ss_pred EEeccHHHHHHHHHHHHhc---cceeEEecCCCcHHHHHH-HHHHcCCCCE-EEEccccH
Confidence 9999998888887654432 33 455567886332211 1112345554 47788764
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.85 E-value=0.018 Score=49.63 Aligned_cols=74 Identities=18% Similarity=0.067 Sum_probs=40.1
Q ss_pred CEEEEEcccchHHH--HHHHHHhhhhhhcCCc-EEEEEecCCch-hHHHHH---------HcCccccCCCcCCHHhhhcc
Q 013877 112 NQIGVIGWGSQGPA--QAQNLRDSLAEAKSDI-VVKVGLRKGSR-SFAEAR---------AAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 112 kkIgIIG~G~mG~A--~A~nLrds~~~~~~G~-~Vivg~r~~~~-s~~~A~---------~~G~~~~~~~~~~~~Ea~~~ 178 (434)
+||+|||.|+.|.+ ++.-+... + .+.. ++. -.+.++. ....+. ..+....-....|..+++++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~--~~~~~eI~-L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g 77 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-H--ELPVGELW-LVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 77 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-T--TCCEEEEE-EECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-c--ccCCCEEE-EEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC
Confidence 58999999998743 44444443 1 0112 444 4443332 111111 12222111124577889999
Q ss_pred CCEEEEeecch
Q 013877 179 SDLVLLLISDA 189 (434)
Q Consensus 179 ADiViLavpd~ 189 (434)
||+|+++....
T Consensus 78 aDvVv~ta~~~ 88 (169)
T d1s6ya1 78 ADFVTTQFRVG 88 (169)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEccccC
Confidence 99999998643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.82 E-value=0.007 Score=52.00 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=59.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc--------
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-------- 177 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-------- 177 (434)
-+| .+|.|+|.|.+|...++-++.. |. +|++..+ ++...+.+++.|.... +-.-.+..+..+
T Consensus 27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAG-SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCC-CEEEEECCCccchhheeccccc------cccccccccc-ccccccccccccceEEEeccccchHHHHHHHHHhhCC
Confidence 357 8999999999999999998887 87 6655544 4556789999886320 111123333221
Q ss_pred -cCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 178 -~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
..|+||-++.... .++.....+++|..+++.
T Consensus 99 ~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 3799999987533 233334556676665533
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.56 E-value=0.017 Score=46.94 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=56.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHH----hhhccCCEEEEeec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----Ea~~~ADiViLavp 187 (434)
|-|-|+|||..|..+++.|+.. + |.+.. .++...+.....|+..-.|...+.+ .-+.+|+.|+++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~--i~vi~-~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------E--VFVLA-EDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------G--EEEEE-SCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------C--CEEEE-cchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 3578999999999999999755 4 33333 3344456667777643222233332 12678999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 013877 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-~iL~~s 211 (434)
+....-.+-.....+.|. .+++-+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred chhhhHHHHHHHHHHCCCceEEEEE
Confidence 877754333323334444 455544
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.56 E-value=0.017 Score=45.18 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=50.1
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
+||=|||.|=+|. ++|+-|++. |+.|...++...+..+..++.|+... .....+-++++|+|+...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEec
Confidence 7899999999997 789999999 99988777666666677888897642 222345567899887653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.51 E-value=0.013 Score=49.63 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=41.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCc--hhHHHHHH--c--CccccCCC----cCCHHhhhcc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARA--A--GFTEENGT----LGDIYETISG 178 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~--~s~~~A~~--~--G~~~~~~~----~~~~~Ea~~~ 178 (434)
+||+|||. |.+|.++|..|..+ ++ ++.+.+.... +.+..+.+ + .....+.. ..+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 58999995 99999999999888 75 6655554321 11111211 1 11100000 1223468889
Q ss_pred CCEEEEee
Q 013877 179 SDLVLLLI 186 (434)
Q Consensus 179 ADiViLav 186 (434)
||+|+++.
T Consensus 75 aDvVVitA 82 (145)
T d1hyea1 75 SDVVIITS 82 (145)
T ss_dssp CSEEEECC
T ss_pred ceEEEEec
Confidence 99999983
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.51 E-value=0.022 Score=49.59 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=52.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-chhHHHHHHcCcccc---C-----------CCcCCHHhhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEE---N-----------GTLGDIYETI 176 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~---~-----------~~~~~~~Ea~ 176 (434)
.||||.|+|.||+.+++.|.+. ..++++..++.. ......+...++..- + ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 6899999999999999999865 146665444432 222344555543210 0 0023566777
Q ss_pred ccCCEEEEeecchHHHHHHH
Q 013877 177 SGSDLVLLLISDAAQADNYE 196 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~ 196 (434)
+++|+|+=|++.....+-.+
T Consensus 78 ~~vDvViEcTG~f~~~~~~~ 97 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKP 97 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHH
T ss_pred ccCCEEEECCCCCCCHHHHH
Confidence 89999999999877765554
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.49 E-value=0.039 Score=47.69 Aligned_cols=75 Identities=21% Similarity=0.080 Sum_probs=40.4
Q ss_pred CEEEEEcccchHHHHH-HHHHhhhhhhcCCcEEEEEecCCchhHH-HHH-------HcCccccCCCcCCHHhhhccCCEE
Q 013877 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA-EAR-------AAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A-~nLrds~~~~~~G~~Vivg~r~~~~s~~-~A~-------~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.||+|||.|+.|.+.+ ..+...+++- .+-+++. .+.+++..+ .+. ..+....-....|..|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~eivL-~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKL-YDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEE-ECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEEEE-EcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 6899999999986633 3333321110 0124544 444332221 111 112211011245788999999999
Q ss_pred EEeecc
Q 013877 183 LLLISD 188 (434)
Q Consensus 183 iLavpd 188 (434)
+++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999754
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.03 Score=48.37 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=41.1
Q ss_pred CEEEEEcccchHHHHH--HHHHhhhhhhcCCcEEEEEecCCchhHHH--------HHHcCccccCCCcCCHHhhhccCCE
Q 013877 112 NQIGVIGWGSQGPAQA--QNLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A--~nLrds~~~~~~G~~Vivg~r~~~~s~~~--------A~~~G~~~~~~~~~~~~Ea~~~ADi 181 (434)
+||+|||.|+.|.+.+ ..|... +. ..+.+++.. +.+++..+. ....+....-....|.+|++++||+
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~-~~-l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT-PG-LSGSTVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC-GG-GTTCEEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc-cc-cCCCEEEEE-eCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence 7999999999997643 333322 00 012355444 444332211 1112221100114588999999999
Q ss_pred EEEeecch
Q 013877 182 VLLLISDA 189 (434)
Q Consensus 182 ViLavpd~ 189 (434)
|++++-..
T Consensus 80 Vv~~~~~g 87 (171)
T d1obba1 80 VINTAMVG 87 (171)
T ss_dssp EEECCCTT
T ss_pred Eeeecccc
Confidence 99986543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.24 E-value=0.049 Score=45.76 Aligned_cols=94 Identities=20% Similarity=0.207 Sum_probs=61.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-C--CCcCCHHhhh-----ccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N--GTLGDIYETI-----SGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~--~~~~~~~Ea~-----~~A 179 (434)
-+| .+|.|+|.|-+|...++-++.. |..+++..+.+++..+.+++.|.... + +...+..+.+ ...
T Consensus 27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 356 8999999999999999988888 87555666666667889999986421 0 0112233333 348
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+||-++...... +.....+++|..++..
T Consensus 100 D~vid~~G~~~~~---~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 100 DYSFECIGNVKVM---RAALEACHKGWGVSVV 128 (176)
T ss_dssp SEEEECSCCHHHH---HHHHHTBCTTTCEEEE
T ss_pred cEeeecCCCHHHH---HHHHHhhcCCceeEEE
Confidence 9999999865443 3334456666544433
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.017 Score=50.47 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-.++| |+|.|||-+. .|..++.-|.+. |..|++.... ..+..+.+++||+||.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence 35789 9999999885 999999999888 8887665322 2356677899999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++.-... +. ..++|+|++|+++
T Consensus 87 a~G~p~~---i~--~~~vk~g~vvIDv 108 (166)
T d1b0aa1 87 AVGKPGF---IP--GDWIKEGAIVIDV 108 (166)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEEC
T ss_pred hccCccc---cc--ccccCCCcEEEec
Confidence 9884333 11 3468999988876
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.23 E-value=0.054 Score=46.53 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=58.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCc-C-CHHhhh-----ccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-G-DIYETI-----SGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~-~~~Ea~-----~~A 179 (434)
-.| .+|.|+|+|-+|...++-++.. |...++..+.++...+.|++.|.... +... . ...... ...
T Consensus 27 ~~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 27 TPG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCC
Confidence 355 8999999999999999999988 87444455555666899999997531 1000 1 122222 357
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCC
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPN 205 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g 205 (434)
|+||-++..... +++-...++++
T Consensus 100 d~vie~~G~~~~---~~~a~~~~~~g 122 (174)
T d1e3ia2 100 DYSLDCAGTAQT---LKAAVDCTVLG 122 (174)
T ss_dssp SEEEESSCCHHH---HHHHHHTBCTT
T ss_pred cEEEEecccchH---HHHHHHHhhcC
Confidence 999999876443 44444556664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.06 E-value=0.037 Score=46.08 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHH----hhhccCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETISGSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----Ea~~~ADiVi 183 (434)
+| .+|.|+|.|.+|...++.++.. |.+|++..+ ++...+.+++.|.... +....+.. +.-.+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~~-~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDI-GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccCC-CHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 46 8999999999999999888887 888765544 4556788999987431 11112222 2234567777
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+++... +.++...+.++++..+++.
T Consensus 99 ~~~~~~---~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 99 VTAVSK---PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred eecCCH---HHHHHHHHHhccCCceEec
Confidence 766543 4455566677787776654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.02 E-value=0.04 Score=46.16 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh----ccCCEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~----~~ADiVi 183 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. +...+.+++.|...- +....+..+.+ ...|.++
T Consensus 27 ~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~~~-~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 27 PG-QWVAISGIGGLGHVAVQYARAM------GLHVAAIDID-DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeeccccHHHHHHHHHHc------CCccceecch-hhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence 46 8999999999999999988887 8887665544 556788999887421 11122333333 2346666
Q ss_pred EeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
.++... +.++...+.++++-.++..
T Consensus 99 ~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 99 VTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp ECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccc---hHHHHHHHHhcCCcEEEEE
Confidence 665543 3455556777777766544
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.99 E-value=0.028 Score=47.72 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhhc-----cCCEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~~-----~ADiV 182 (434)
.| .+|.|+|.|.+|...++-++.. |..+++..+.++...+.+++.|...- +....+.++..+ ..|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 35 8999999999999999998887 76445555555666888888886421 111111222222 37889
Q ss_pred EEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|-++..... ++.....++++-.++..
T Consensus 105 id~~g~~~~---~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 105 MDFVGSQAT---VDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EESSCCHHH---HHHGGGGEEEEEEEEEC
T ss_pred EEecCcchH---HHHHHHHHhCCCEEEEE
Confidence 988886542 44455667777665543
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.025 Score=47.81 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=40.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH--cCccc-cCC-C-cCCHHhhhccCCEEEEe
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTE-ENG-T-LGDIYETISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~-~~~-~-~~~~~Ea~~~ADiViLa 185 (434)
+||+|||. |.+|.++|..|...+ +...++.+.+ ..+.....+.+ +.... ... . ..+..+++++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D-~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYD-IAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEEC-SSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEec-ccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 68999995 999999998875320 1123555444 33333333332 11100 000 0 12335678999999998
Q ss_pred e
Q 013877 186 I 186 (434)
Q Consensus 186 v 186 (434)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=94.95 E-value=0.012 Score=49.89 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=40.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCc--hhHHHHHHc----Ccccc-CCCcCCHHhhhccCCE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAA----GFTEE-NGTLGDIYETISGSDL 181 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r~~~--~s~~~A~~~----G~~~~-~~~~~~~~Ea~~~ADi 181 (434)
.||+||| .|.+|.++|..|..+ ++ ++.+.+.... ..+..+.+. .+... .-...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 3899999 699999999999988 76 5544442211 222222221 11100 0012343 45689999
Q ss_pred EEEee
Q 013877 182 VLLLI 186 (434)
Q Consensus 182 ViLav 186 (434)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.0084 Score=50.99 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CC-CcCCH-HhhhccCCEEEEe
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TLGDI-YETISGSDLVLLL 185 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~-~~~~~-~Ea~~~ADiViLa 185 (434)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|...- +. ...+. +......|+|+.+
T Consensus 27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~~-~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCCcchhHHHHhhhc------cccccccccc-hhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 56 8999999999999999988887 9988766654 455788999886320 00 01122 2234457999888
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+...... .+......++++-.++..
T Consensus 99 ~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 99 ASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred ecCCccc-hHHHHHHHhhccceEEEe
Confidence 6643211 133345566776555543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.89 E-value=0.017 Score=50.13 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=52.9
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----C--ccccCC-CcCCHHhhhc
Q 013877 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENG-TLGDIYETIS 177 (434)
Q Consensus 106 ~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G--~~~~~~-~~~~~~Ea~~ 177 (434)
..|+| |+|-|.| .|-+|.++|+.|.+. |.+|++..|+.++..+.+... . +...|- ...++++++.
T Consensus 19 ~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 19 GSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp SCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence 67899 9999999 689999999999999 999988888755544443332 1 111010 0123556788
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
+.|+||.+..
T Consensus 92 ~iDilin~Ag 101 (191)
T d1luaa1 92 GAHFVFTAGA 101 (191)
T ss_dssp TCSEEEECCC
T ss_pred CcCeeeecCc
Confidence 9999998765
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.83 E-value=0.054 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds 133 (434)
.||+|||. |.+|.+++..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 59999996 99999999999876
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.80 E-value=0.047 Score=46.08 Aligned_cols=74 Identities=12% Similarity=-0.034 Sum_probs=40.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHH------cCcccc---CCCcCCHHhhhccCC
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA------AGFTEE---NGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~------~G~~~~---~~~~~~~~Ea~~~AD 180 (434)
.||+|||. |.+|.++|..|.... =.+... ..++-.+.+ +...+++. +..... .....+..++++++|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~-~~~~~~~~~L~l~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGS-VFGKDQPIILVLLDIT-PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTT-TTCTTCCEEEEEECCG-GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred eEEEEECCCCHHHHHHHHHHHHHH-hcCCCCccEEEEecCc-cchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 69999995 999999999987640 000011 122233332 22222221 111000 001346788999999
Q ss_pred EEEEeec
Q 013877 181 LVLLLIS 187 (434)
Q Consensus 181 iViLavp 187 (434)
+|+++-.
T Consensus 82 vVVitag 88 (154)
T d5mdha1 82 VAILVGS 88 (154)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999863
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.037 Score=48.26 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..+..+.+++||+|+.+
T Consensus 36 ~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~a 89 (170)
T d1a4ia1 36 PIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVVA 89 (170)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEEC
T ss_pred cccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhhc
Confidence 5789 999999997 5999999999988 8887765432 23456678899999999
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.-... ++ ..++++|.+|+++ |+
T Consensus 90 ~G~~~~---i~--~~~vk~g~iviDv-gi 112 (170)
T d1a4ia1 90 TGQPEM---VK--GEWIKPGAIVIDC-GI 112 (170)
T ss_dssp CCCTTC---BC--GGGSCTTCEEEEC-CC
T ss_pred cccccc---cc--cccccCCCeEecc-Cc
Confidence 985433 21 3468999988877 44
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.54 E-value=0.079 Score=45.39 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=52.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-cC-CHHhhh-----ccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LG-DIYETI-----SGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~-~~~Ea~-----~~A 179 (434)
-+| .+|.|+|+|-+|...++.++.. |...++..+.++...+.|++.|.... +.. .. ..++.. ...
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccc
Confidence 346 8999999999999999999988 86334455666677899999997531 100 01 122111 358
Q ss_pred CEEEEeecchHH
Q 013877 180 DLVLLLISDAAQ 191 (434)
Q Consensus 180 DiViLavpd~a~ 191 (434)
|++|.++.....
T Consensus 101 d~vi~~~g~~~~ 112 (176)
T d1d1ta2 101 GYTFEVIGHLET 112 (176)
T ss_dssp CEEEECSCCHHH
T ss_pred eEEEEeCCchHH
Confidence 999999886543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.48 E-value=0.11 Score=44.27 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=53.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC--HHhhh-----c
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----S 177 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~--~~Ea~-----~ 177 (434)
+.-+| .+|.|+|+|-+|...++.++.. |...++..+.+++..+.|++.|.... +-...+ .++.. .
T Consensus 24 ~~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 24 KVTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 34556 8999999999999999999988 87444556655667899999997531 100111 22332 2
Q ss_pred cCCEEEEeecchH
Q 013877 178 GSDLVLLLISDAA 190 (434)
Q Consensus 178 ~ADiViLavpd~a 190 (434)
..|+||-++....
T Consensus 97 G~d~vid~~g~~~ 109 (174)
T d1p0fa2 97 GVDYAVECAGRIE 109 (174)
T ss_dssp CBSEEEECSCCHH
T ss_pred CCcEEEEcCCCch
Confidence 4799999987643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.028 Score=47.52 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCC---HHhhhccCCEEEE
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~---~~Ea~~~ADiViL 184 (434)
.| .+|.|+|.|.+|...++-++.. |.++++..+.+ +..+.+++.|...- + ..+ .....+..|++|-
T Consensus 30 ~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~~-~~~~~a~~lGad~~i~--~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 30 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTSE-AKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSG-GGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEeccchHHHHHHHHhhcc------cccchhhccch-hHHHHHhccCCcEEEE--CchhhHHHHhcCCCceeee
Confidence 46 8999999999999999999888 98877666554 45688888886420 1 111 2233456899999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
++..... ++.....++++-.++..
T Consensus 100 ~~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 100 TVAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CCSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eeecchh---HHHHHHHHhcCCEEEEe
Confidence 9975432 23334556666555544
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=94.35 E-value=0.039 Score=47.10 Aligned_cols=75 Identities=13% Similarity=-0.002 Sum_probs=42.2
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCchhHHHHHH-------cCccccCCCcCCHHhhhccCCEEE
Q 013877 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
+||+|||.|+.|.+++.... +..++ ...-++.+. |.++...+.+.+ ..... ....+.++++++||+|+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~-~~~~el~L~-Did~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVV 76 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISED-VRIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVI 76 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTT-SCCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccc-cCccEEEEE-ecCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEE
Confidence 58999999999988875422 21000 001255444 444433332222 11111 11356789999999999
Q ss_pred EeecchH
Q 013877 184 LLISDAA 190 (434)
Q Consensus 184 Lavpd~a 190 (434)
+..-...
T Consensus 77 ita~~~~ 83 (162)
T d1up7a1 77 FQFRPGG 83 (162)
T ss_dssp ECCCTTH
T ss_pred EecccCC
Confidence 9876543
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.29 E-value=0.024 Score=48.35 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=63.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh--hhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecc
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds--~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd 188 (434)
+|||||| .|..|.-+.+.|.+. ++ ..++.....+ ++..+....+............+..+++|+||+|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~--~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTS--QIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESS--CCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEeccc--cccccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 5899999 689999988877643 00 1243322211 1111111111110000011223557899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEeccchhhhhhcccccCCCCccEEEeccCCChhhHHHHHhhc
Q 013877 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (434)
Q Consensus 189 ~a~~~vl~eI~~~Lk~g~iL~~s~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (434)
....++.+++... ..+..|++.++. | +-+-++..+-|-.-...+.....+|
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSsd---f--------R~~~dvpl~lPEiN~~~I~~a~~~~ 125 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAST---L--------RMDKEAIITLDPVNLKQILHGIHHG 125 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSST---T--------TTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCcc---c--------cccCCceEEeCCcCHHHHHHHHHcC
Confidence 8888888776543 122356655442 1 1122667777754444444334443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.03 Score=46.67 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~ 147 (434)
-.++| |+|.|||.|.+|..-++.|.+. |-+|+|..
T Consensus 9 ~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva 43 (150)
T d1kyqa1 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS 43 (150)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred eeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 34889 9999999999999999999998 88877664
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=0.14 Score=42.62 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=62.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecchHH
Q 013877 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (434)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~a~ 191 (434)
||+|+| .|.||..++..+.+. .++++..+.+.+... . ...-.++|+||=-+.|...
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~~----------------~--~~~~~~~DvvIDFS~p~~~ 57 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDPL----------------S--LLTDGNTEVVIDFTHPDVV 57 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCCT----------------H--HHHTTTCSEEEECCCTTTH
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCch----------------h--hhccccCCEEEEcccHHHH
Confidence 799999 699999999887765 167776666542210 0 0112468999999999999
Q ss_pred HHHHHHHHhcCCCCc-EEEEeccchhhhhhcc--cccCCCCccEEEeccCCCh
Q 013877 192 ADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSM--GLDFPKNIGVIAVCPKGMG 241 (434)
Q Consensus 192 ~~vl~eI~~~Lk~g~-iL~~s~G~~i~~~~~~--~i~~~~di~VI~v~Pn~pg 241 (434)
.+.++....+ |. +|+=+.||+-..++.. ...-.+++.+ ..+||++-
T Consensus 58 ~~~~~~~~~~---~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipi-l~apNfSl 106 (135)
T d1yl7a1 58 MGNLEFLIDN---GIHAVVGTTGFTAERFQQVESWLVAKPNTSV-LIAPNFTS 106 (135)
T ss_dssp HHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHHHSCTTCEE-EECSCCGG
T ss_pred HHHHHHHHhc---CCCEEEeccccchhHHHHHHHHHHhcCCCCE-EEcCCccH
Confidence 8888765443 33 4555678864322210 0001234444 47788763
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.12 E-value=0.049 Score=47.65 Aligned_cols=96 Identities=22% Similarity=0.177 Sum_probs=63.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~A 179 (434)
-.| .+|.|+|+|.+|...++-++.. |. +|+ ..+.++...+.|++.|.... +....+..+.+ ..+
T Consensus 24 ~~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi-~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 24 GPG-STVYVAGAGPVGLAAAASARLL------GAAVVI-VGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHhh------ccccee-eecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 346 8999999999998888888776 66 554 44444566889999987531 11112333322 247
Q ss_pred CEEEEeecchH------------HHHHHHHHHhcCCCCcEEEEe
Q 013877 180 DLVLLLISDAA------------QADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 180 DiViLavpd~a------------~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|++|-++.-.. ..+.++.....++++-.|++.
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 99999885221 235677766778888777654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.08 E-value=0.057 Score=48.55 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+..+..+...+.|-.. ..-.+|+
T Consensus 2 ~l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dl---- 60 (241)
T d2a4ka1 2 RLSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERLLAEAVAALEAEA----------IAVVADV---- 60 (241)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCSSE----------EEEECCT----
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCce----------EEEEecC----
Confidence 4789 9999999875 999999999999 9999888776444333333322110 0001222
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
..++.+.++++++...+.+=.+|+..+|.
T Consensus 61 s~~~~i~~~~~~i~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 61 SDPKAVEAVFAEALEEFGRLHGVAHFAGV 89 (241)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCccEecccccc
Confidence 23445556777776655444466666654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.01 E-value=0.15 Score=42.83 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=52.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CC-Cc-CCHHhhh-----ccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TL-GDIYETI-----SGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~-~~-~~~~Ea~-----~~A 179 (434)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|.... +. .. ....+.. ...
T Consensus 27 k~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (176)
T d2jhfa2 27 TQG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCC
Confidence 356 8999999999999999999988 76344455555666889999887531 00 00 1122222 247
Q ss_pred CEEEEeecchHHH
Q 013877 180 DLVLLLISDAAQA 192 (434)
Q Consensus 180 DiViLavpd~a~~ 192 (434)
|+||-++......
T Consensus 100 D~vid~~G~~~~~ 112 (176)
T d2jhfa2 100 DFSFEVIGRLDTM 112 (176)
T ss_dssp SEEEECSCCHHHH
T ss_pred CEEEecCCchhHH
Confidence 9999999876543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.95 E-value=0.049 Score=45.76 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=58.6
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccc-cCCCcCCHHhhh------ccC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGS 179 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~~~Ea~------~~A 179 (434)
.| .+|.|+|. |.+|...++-++.. |. +|++ .+.+++..+.+++.|... .+....+..+.+ ...
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~-~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIG-VDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEE-EESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccc-cccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 45 89999995 99999999888887 75 5544 444466678888888631 011122332222 237
Q ss_pred CEEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 180 DiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
|+|+-++.... .++.....++++-.+++.
T Consensus 99 d~vid~~g~~~---~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 99 DAVIDLNNSEK---TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEEESCCCHH---HHTTGGGGEEEEEEEEEC
T ss_pred hhhhcccccch---HHHhhhhhcccCCEEEEe
Confidence 88888877533 334445667777666544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.89 E-value=0.18 Score=42.14 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=51.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCC-c-CCHHhhh-----ccC
Q 013877 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-L-GDIYETI-----SGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~-~~~~Ea~-----~~A 179 (434)
-+| .+|.|+|.|.+|...++.++.. |-..++..+..+...+.+++.|.... +.. . ....+.. ...
T Consensus 27 k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~ 99 (175)
T d1cdoa2 27 EPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 99 (175)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCc
Confidence 355 8999999999999999998887 65444555555666899999997421 000 0 1122222 248
Q ss_pred CEEEEeecchHH
Q 013877 180 DLVLLLISDAAQ 191 (434)
Q Consensus 180 DiViLavpd~a~ 191 (434)
|+|+-++.....
T Consensus 100 d~vid~~G~~~~ 111 (175)
T d1cdoa2 100 DFSLECVGNVGV 111 (175)
T ss_dssp SEEEECSCCHHH
T ss_pred ceeeeecCCHHH
Confidence 999999986544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=93.77 E-value=0.2 Score=43.27 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=40.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCchhHHHHH----H--cCcccc---CCCcCCHHhhhccCC
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEAR----A--AGFTEE---NGTLGDIYETISGSD 180 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg-~r~~~~s~~~A~----~--~G~~~~---~~~~~~~~Ea~~~AD 180 (434)
-||.|+|. |.+|.+++..|... +=.|....+.+. .+. .+....++ + +..... -....+..++++++|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di-~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGS-ERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECC-GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred cEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecC-ccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 58999996 99999999999864 001111122222 222 22222221 1 111000 001457789999999
Q ss_pred EEEEee
Q 013877 181 LVLLLI 186 (434)
Q Consensus 181 iViLav 186 (434)
+||++-
T Consensus 103 vVvi~a 108 (175)
T d7mdha1 103 WALLIG 108 (175)
T ss_dssp EEEECC
T ss_pred eEEEee
Confidence 999986
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.29 E-value=0.017 Score=47.61 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=52.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhh-ccCCEEEEeecchH
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~-~~ADiViLavpd~a 190 (434)
.+|.|+|+|+.|.+++..++.+ .+++++...+.+.+....- =.|..+- ...+.++.+ +..++.++++|...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G~~-I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVGRP-VRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTTCE-ETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcCCE-ECCEEEe--cHHHHHHHHhhcccEEEEeCCHHH
Confidence 4799999999999999877543 1778776666554322111 1344431 012333333 35788999999988
Q ss_pred HHHHHHHHHh
Q 013877 191 QADNYEKIFS 200 (434)
Q Consensus 191 ~~~vl~eI~~ 200 (434)
..++++.+..
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887544
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=93.28 E-value=0.1 Score=45.35 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-c-CCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeec
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~-r-~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavp 187 (434)
|.|||||| .|..|.-+.+-|.+. . .+++.... + ...+........-.....-...+.++..+++|+||+++|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccc
Confidence 68999999 689999998887654 1 23443322 2 222223222111000000012456677788999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecc-ch
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHG-FL 215 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G-~~ 215 (434)
...-.+... .. .+..|++.++ |-
T Consensus 76 ~~~s~~~~~----~~-~~~~VIDlSadfR 99 (176)
T d1vkna1 76 AGASYDLVR----EL-KGVKIIDLGADFR 99 (176)
T ss_dssp TTHHHHHHT----TC-CSCEEEESSSTTT
T ss_pred cHHHHHHHH----hh-ccceEEecCcccc
Confidence 877665543 33 4556666554 53
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.21 E-value=0.23 Score=44.26 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=54.1
Q ss_pred ccCCCCEEEEEcc-c--chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEE
Q 013877 107 AFNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
.|+| |++-|.|. | -||.++|+.|.+. |.+|++..|+. +..+.+++ ..+....+.++.
T Consensus 2 ~L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~------------l~~~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRP------------IAQELNSPYVYE 61 (274)
T ss_dssp TTTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHH------------HHHHTTCCCEEE
T ss_pred cCCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHH------------HHhhCCceeEee
Confidence 4789 99999997 4 3999999999999 99998887763 32333222 111122333433
Q ss_pred Eeec-chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 184 LLIS-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 184 Lavp-d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.-+. +....++++++...+.+=.+++..+|.
T Consensus 62 ~d~~~~~~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp CCTTCHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred ecccchhhHHHHHHHHHHHcCCCCeEEeeccc
Confidence 3333 334456777766655443345556664
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.12 E-value=0.043 Score=47.14 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
+||.|||.|..|.+.|..|.+. |++|.|..+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7899999999999999999999 9999888764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.12 E-value=0.041 Score=46.93 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|||.|||.|.-|.+-|..|++. |++|.|..+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 8999999999999999999999 9999887643
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.12 Score=47.83 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=59.7
Q ss_pred cccccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 104 LPDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 104 ~~~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
.|.-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+..-. .. ......++
T Consensus 6 ~~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el~~~--------~~-~~~~~~~~ 69 (297)
T d1yxma1 6 APGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADELQAN--------LP-PTKQARVI 69 (297)
T ss_dssp CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHT--------SC-TTCCCCEE
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhh--------hc-cccCceEE
Confidence 4567999 999999976 5999999999999 999988887644433333321100 00 01233454
Q ss_pred EEee---cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 183 LLLI---SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 183 iLav---pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.+.+ .++.+.++++++...+.+=.+|+..+|.
T Consensus 70 ~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 70 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 4443 3444557777776655444467766665
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.06 E-value=0.1 Score=47.45 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=55.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++.|-.. ..-.+|+
T Consensus 2 dL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dv---- 60 (254)
T d1hdca_ 2 DLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDEEGAATARELGDAA----------RYQHLDV---- 60 (254)
T ss_dssp CCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTGGGE----------EEEECCT----
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce----------EEEEccc----
Confidence 5899 999999977 5999999999999 9999888776444333333322110 0112332
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+.++...++++++.....+=.+|+..+|+.
T Consensus 61 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~~ 90 (254)
T d1hdca_ 61 TIEEDWQRVVAYAREEFGSVDGLVNNAGIS 90 (254)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEecCccc
Confidence 334455577777665443323677777763
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.82 E-value=0.046 Score=46.52 Aligned_cols=87 Identities=23% Similarity=0.193 Sum_probs=59.6
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHh------hhccCC
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE------TISGSD 180 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~E------a~~~AD 180 (434)
-+| ++|.|.|. |.+|....+-++.. |.+|++..+++ +..+.+++.|... +.+..+ .-+.+|
T Consensus 26 ~~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~~-~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASRP-EKLALPLALGAEE----AATYAEVPERAKAWGGLD 93 (171)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESSG-GGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEE
T ss_pred CCC-CEEEEEeccccchhhhhhhhccc------ccccccccccc-cccccccccccce----eeehhhhhhhhhcccccc
Confidence 356 89999995 99999998888887 99887766653 4467888888753 222222 224589
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+||-++.+. ++.....++++-.++..
T Consensus 94 ~v~d~~G~~-----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVLEVRGKE-----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEECSCTT-----HHHHHTTEEEEEEEEEC
T ss_pred ccccccchh-----HHHHHHHHhcCCcEEEE
Confidence 999887642 34555677777665543
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.69 E-value=0.11 Score=48.05 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=49.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHH--HHcCccccCCCcCC----HHhhhccCCEEEE
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA--RAAGFTEENGTLGD----IYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A--~~~G~~~~~~~~~~----~~Ea~~~ADiViL 184 (434)
|+|.|+| .|.+|.++++.|.+. |++|++..|+.++..... ...|+..-.+...+ ...+...+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 8999999 599999999999999 999988877644322222 22344321111223 3457788999998
Q ss_pred eecchH
Q 013877 185 LISDAA 190 (434)
Q Consensus 185 avpd~a 190 (434)
..++..
T Consensus 78 ~~~~~~ 83 (350)
T d1xgka_ 78 NTTSQA 83 (350)
T ss_dssp CCCSTT
T ss_pred eccccc
Confidence 887554
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.036 Score=48.37 Aligned_cols=95 Identities=13% Similarity=0.059 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccC--------CCcCCHHhhh
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------GTLGDIYETI 176 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--------~~~~~~~Ea~ 176 (434)
..++| |++.|||-++ .|.++|.-|.+. |..|.+........... ...+.... .+...+.+.+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lk~~~ 95 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTR--GESLKLNKHHVEDLGEYSEDLLKKCS 95 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEES--CCCSSCCCCEEEEEEECCHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEecccccccccc--ccceeeeeeccccccccchhHHhhcc
Confidence 47899 9999999885 599999999988 87776655432211000 00000000 0001256777
Q ss_pred ccCCEEEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 177 ~~ADiViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
.+||+||.+++..... + =.+++|+|+++++...
T Consensus 96 ~~aDIvIsavG~p~~~--i--~~d~ik~GavvIDvGi 128 (171)
T d1edza1 96 LDSDVVITGVPSENYK--F--PTEYIKEGAVCINFAC 128 (171)
T ss_dssp HHCSEEEECCCCTTCC--B--CTTTSCTTEEEEECSS
T ss_pred ccCCEEEEccCCCccc--c--ChhhcccCceEeeccc
Confidence 8999999999864320 0 0246799999988753
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.45 E-value=0.049 Score=45.69 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~ 149 (434)
+||+|||.|..|...|..|++. |+ +|.+..+.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~ 37 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQ 37 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESS
T ss_pred CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEec
Confidence 8999999999999999999999 98 58777664
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.39 E-value=0.11 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhh
Q 013877 110 GINQIGVIG-WGSQGPAQAQNLRDS 133 (434)
Q Consensus 110 g~kkIgIIG-~G~mG~A~A~nLrds 133 (434)
+|++|.|.| .|.+|.++++.|.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~ 26 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG 26 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC
Confidence 379999999 699999999999998
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.32 E-value=0.04 Score=46.29 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=53.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecC--CchhHHHHHHcCccccCCCc-CCHHhhhccCCEEEE
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK--GSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~---~Vivg~r~--~~~s~~~A~~~G~~~~~~~~-~~~~Ea~~~ADiViL 184 (434)
+||||||. |..|.-+.+-|.+. ++ ++.....+ ..+.. ...... -.. ....+...++|++|+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~------~hP~~~l~~~~s~~~~Gk~i----~~~~~~--~~~~~~~~~~~~~~d~vf~ 70 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDER------DFPLHRLHLLASAESAGQRM----GFAESS--LRVGDVDSFDFSSVGLAFF 70 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCCSCEEEEECTTTTTCEE----EETTEE--EECEEGGGCCGGGCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc------CCCceEEEEEeecccCCcce----eecccc--chhccchhhhhccceEEEe
Confidence 68999996 99999999988654 32 44322111 11111 111110 001 112345678999999
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
++|.....++..++. ..|..|++.++.
T Consensus 71 a~p~~~s~~~~~~~~---~~g~~VID~Ss~ 97 (144)
T d2hjsa1 71 AAAAEVSRAHAERAR---AAGCSVIDLSGA 97 (144)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEETTCT
T ss_pred cCCcchhhhhccccc---cCCceEEeechh
Confidence 999888877776654 467778877664
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.27 E-value=0.1 Score=47.25 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=53.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.++ .+++.+. ... .......+ .+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~~~-l~~~~~~-~~~----~~~~~~~~-~~D~---- 64 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNEKE-LDECLEI-WRE----KGLNVEGS-VCDL---- 64 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHH----TTCCEEEE-ECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCceEE-Eeec----
Confidence 4789 99999995 57999999999999 9999888776433 2222221 110 00000011 1332
Q ss_pred ecchHHHHHHHHHHhcC-CCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCM-KPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~L-k~g~iL~~s~G~ 214 (434)
..++...++++++.... .+-.+|+..+|.
T Consensus 65 s~~~~~~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 65 LSRTERDKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp TCHHHHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeccccc
Confidence 33444456777777665 344466666665
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.06 E-value=0.18 Score=45.11 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=53.3
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++.+.. .+ .+|+ .
T Consensus 3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~~~l~~~~~~~~~~-----------~~-~~Dv----~ 59 (242)
T d1ulsa_ 3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEEGPLREAAEAVGAH-----------PV-VMDV----A 59 (242)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTTCE-----------EE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCe-----------EE-EEec----C
Confidence 688 999999976 5999999999999 999988877644333333222221 11 2342 2
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.++.+.++++++...+.+=.+|+..+|+
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 3444456777766554332367777775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.19 Score=42.25 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=59.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
+| .+|.|+|. |.+|.+..+-++.. |.+|++..++ ++..+.+++.|.... +....+..+.+ +..|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 56 89999995 99999999888887 9988776664 445788888887421 11112333433 2368
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+|+-++... .++...+.++++-.++.
T Consensus 100 ~v~d~~g~~----~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 100 IIIEMLANV----NLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp EEEESCHHH----HHHHHHHHEEEEEEEEE
T ss_pred EEeecccHH----HHHHHHhccCCCCEEEE
Confidence 888887643 34555566777665553
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.89 E-value=0.19 Score=45.23 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.+-.. . .-.+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~---------~-~~~~Dv---- 61 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADAA---------R-YVHLDV---- 61 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGGE---------E-EEECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCcc---------e-EEEeec----
Confidence 5788 999998975 5999999999999 9999888776444333333321110 0 011232
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++...++++++.....+=.+|+..+|.
T Consensus 62 ~~~~~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence 23344457777776655443477777775
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=91.74 E-value=0.17 Score=42.53 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=47.7
Q ss_pred cCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhH----HHHHHcCccccCCCcCCHHhhhc
Q 013877 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (434)
Q Consensus 108 ~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~Ea~~ 177 (434)
|+| +||++||=| ++-.|++..+..- |+++.+...++ .... +.+.+.+.... ...+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~--~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCceE--EEecHHHhhh
Confidence 578 999999954 6999999988887 98876654321 1111 22333333210 1468999999
Q ss_pred cCCEEEEeec
Q 013877 178 GSDLVLLLIS 187 (434)
Q Consensus 178 ~ADiViLavp 187 (434)
++|+|+...-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=91.72 E-value=0.13 Score=44.76 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=33.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
..-+. |+|+|||.|.-|.+-|..|.+. |++|.+..+.
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~ 75 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAH 75 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEecc
Confidence 56667 9999999999999999999999 9999988765
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.57 E-value=0.084 Score=45.94 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
+||.|||.|.-|.+.|..|++. |++|+|..+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999888764
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.55 E-value=0.08 Score=46.40 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|||+|||.|.-|.+-|..|.+. |++|.|..+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999887653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.34 E-value=0.083 Score=48.73 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=29.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.||||+|||.|.-|.+.|..|++. +.+++|++..+.
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~ 38 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERR 38 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECC
Confidence 469999999999999999999876 113588777665
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.22 E-value=0.11 Score=46.08 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=33.4
Q ss_pred ccCCCCEEEEEcc-cc--hHHHHHHHHHhhhhhhcCCcEEEEEecCCchh
Q 013877 107 AFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~--mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s 153 (434)
-|+| |++-|.|. |+ ||.++|+.|.+. |.+|++..++..+.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 4788 99999996 65 999999999999 99998877765443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.46 Score=42.56 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+.|.| |.|-|.|.+. +|.++|+.|.+. |.+|++..|+.++..+.+.+. .+.-.++-.+.+
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~~------------~~~~~~~~~~~~ 63 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAKC------------KGLGAKVHTFVV 63 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHTTCCEEEEEC
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HhcCCcEEEEEe
Confidence 56889 9999999886 999999999999 999988887644322222221 111011112222
Q ss_pred eecch-HHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 185 LISDA-AQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 185 avpd~-a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
=+.+. .+.++++++.....+=.+|+..+|..
T Consensus 64 Dvs~~~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred eCCCHHHHHHHHHHHHHHcCCCceeEeecccc
Confidence 23333 33567777776665545677777764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.47 Score=42.55 Aligned_cols=91 Identities=15% Similarity=0.021 Sum_probs=55.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+.||| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|...+..+.+.+. .+.-...+++.+
T Consensus 6 ~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~~~~l~~~~~~l------------~~~~~~~~~~~~ 66 (257)
T d1xg5a_ 6 ERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCARTVGNIEELAAEC------------KSAGYPGTLIPY 66 (257)
T ss_dssp GGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHTTCSSEEEEE
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HhcCCCceEEEE
Confidence 45899 999999976 7999999999999 999888776533322222211 111011233332
Q ss_pred e---ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 185 L---ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 185 a---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
. ..++...++++++...+..=.+|+..+|+.
T Consensus 67 ~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 67 RCDLSNEEDILSMFSAIRSQHSGVDICINNAGLA 100 (257)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEeccccc
Confidence 1 334555577777665543334677777763
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.098 Score=42.13 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.||||||.|-.|.-+++..++- |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999988 9998876643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.17 Score=44.77 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=37.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH
Q 013877 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (434)
+.||| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHH
Confidence 35899 999999976 4999999999999 99998888776654444443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.98 E-value=0.13 Score=46.36 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+..+..+.+++.. +.. ..+++.+.
T Consensus 6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~------------~~~-g~~~~~~~ 65 (260)
T d1h5qa_ 6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKVG------------KEF-GVKTKAYQ 65 (260)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHHH------------HHH-TCCEEEEE
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH------------HHh-CCceEEEE
Confidence 4789 9999999775 999999999999 9999888877554333332210 000 11222222
Q ss_pred ---ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++...++++++.....+=.+|+..+|+
T Consensus 66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEecccccc
Confidence 23444556777776655332356666665
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=90.98 E-value=0.27 Score=41.92 Aligned_cols=95 Identities=11% Similarity=0.214 Sum_probs=55.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEE-EecC----CchhHHHHHH--cCccccC-CCcCCHHhhhccCCE
Q 013877 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK----GSRSFAEARA--AGFTEEN-GTLGDIYETISGSDL 181 (434)
Q Consensus 111 ~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Viv-g~r~----~~~s~~~A~~--~G~~~~~-~~~~~~~Ea~~~ADi 181 (434)
|.||+||| .|..|.-+.+-|.+. + .+++.. ..+. ..+....... .+..... ....+..+...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P----~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-P----HMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-T----TEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-C----CCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 68999999 799999999888764 1 334432 2221 1122222111 1111000 001233445678999
Q ss_pred EEEeecchHHHHHHHHHHhcCCCCcEEEEecc
Q 013877 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
+|+|+|+....+....+.+ .|..+++.++
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred eeccccchhHHHHhhhhhh---cCceeecccc
Confidence 9999999888887766543 5666776654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.93 E-value=0.23 Score=44.87 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+.+-. .. ...+ .+|+
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~------~~-~~~~-~~Dv---- 63 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIADDHGQKVCNNIGSP------DV-ISFV-HCDV---- 63 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCCT------TT-EEEE-ECCT----
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhcCC------Cc-eEEE-EccC----
Confidence 5889 999999966 5999999999999 999988877644333333222110 00 0011 2332
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++.+.++++++.....+=.+|+..+|.
T Consensus 64 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCcceecccccc
Confidence 34455567777776554333467777775
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.87 E-value=0.11 Score=48.27 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|||.|||.|.-|.+.|..|.+. |++|.|....
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~ 34 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQR 34 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECC
Confidence 9999999999999999999998 9999887654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.79 E-value=0.25 Score=42.69 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=49.0
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHH----HHcCccccCCCcCCHHhhh
Q 013877 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAGFTEENGTLGDIYETI 176 (434)
Q Consensus 107 ~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A----~~~G~~~~~~~~~~~~Ea~ 176 (434)
-|+| .||++||=| ++..|++..+..- |+++.+.... .+...+.+ ...|.... ...+.++++
T Consensus 2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~eai 72 (185)
T d1dxha2 2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV 72 (185)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEE--EEeChhhcc
Confidence 4788 999999944 8999999999887 9988776432 22223333 23443210 146899999
Q ss_pred ccCCEEEEee
Q 013877 177 SGSDLVLLLI 186 (434)
Q Consensus 177 ~~ADiViLav 186 (434)
+++|+|...+
T Consensus 73 ~~aDvVyt~~ 82 (185)
T d1dxha2 73 KGVDFVHTDV 82 (185)
T ss_dssp TTCSEEEECC
T ss_pred ccccEEEeeh
Confidence 9999988755
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.58 E-value=0.71 Score=41.40 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe-
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa- 185 (434)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++ .+.+.+. ..+...+..++.+.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~-l~~~~~~-----------~~~~~~~~~~~~~~~ 62 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSSEG-LEASKAA-----------VLETAPDAEVLTTVA 62 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-----------HHHHCTTCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-----------HHhhCCCCeEEEEec
Confidence 788 998898976 5999999999999 9999888776332 2222110 11111223343332
Q ss_pred --ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 --vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++...++++++...+.+=.+|+..+|+
T Consensus 63 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 23445557777776655433467777775
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.51 E-value=0.34 Score=43.88 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=30.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
..|+| ++|+|=|+|+.|...|+.|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 45889 9999999999999999999998 988754443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.34 E-value=0.096 Score=44.72 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|+|||.|.-|.+-|..|.+. |++|.|..+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 5799999999999999999999 9999887654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.30 E-value=0.27 Score=44.16 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=55.0
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.|-.. . .-.+|+ +
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~~~~---------~-~~~~Dv----t 61 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEAARATAAEIGPAA---------C-AIALDV----T 61 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHHHHHHHHHHCTTE---------E-EEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce---------E-EEEeeC----C
Confidence 788 999999974 7999999999999 9999888776444444444333211 0 012333 3
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
.++...++++++.....+=.+|+..+|+
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeeccc
Confidence 4455567777766554333367777775
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.30 E-value=0.3 Score=41.20 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=46.3
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhHHHHHHc----CccccCCCcCCHHhhhcc
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA----GFTEENGTLGDIYETISG 178 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~~~A~~~----G~~~~~~~~~~~~Ea~~~ 178 (434)
|+| +||++||-| ++..|++..|..- |+++.+.... +....+.+.+. +... ....+..|++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAVKD 72 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHTTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceE--EEecCHHHHhhh
Confidence 688 999999976 5778888888776 8887765432 22223333332 2211 114688999999
Q ss_pred CCEEEEe
Q 013877 179 SDLVLLL 185 (434)
Q Consensus 179 ADiViLa 185 (434)
+|+|..-
T Consensus 73 adviy~~ 79 (163)
T d1pvva2 73 ADVIYTD 79 (163)
T ss_dssp CSEEEEC
T ss_pred ccEEeec
Confidence 9998864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.24 E-value=0.36 Score=42.39 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=47.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch-hH------HHHHHcCccccCCCcCC---HHhhhccCC
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF------AEARAAGFTEENGTLGD---IYETISGSD 180 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~-s~------~~A~~~G~~~~~~~~~~---~~Ea~~~AD 180 (434)
+||.|+| .|.+|..++..|.+. |++|++..|.... .. ......++....+...+ ..+++++++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6899999 599999999999999 9998877775321 11 11223344321111223 446778899
Q ss_pred EEEEeecch
Q 013877 181 LVLLLISDA 189 (434)
Q Consensus 181 iViLavpd~ 189 (434)
.++.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 999887653
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.20 E-value=0.24 Score=44.61 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=53.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.|-.. ..-.+|+
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~~~~----------~~~~~Dv---- 61 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAELGERS----------MFVRHDV---- 61 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE----------EEECCCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCCe----------EEEEeec----
Confidence 4789 888888965 5999999999999 9998877765333333333322110 0001222
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.+....++++++...+.+=.+|+..+|.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 62 SSEADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 23444556777776555444567777775
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.08 E-value=0.68 Score=40.99 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~---mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.|+| |++-|.|.++ +|.++|+.|.+. |.+|++..|.
T Consensus 5 ~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~ 43 (256)
T d1ulua_ 5 DLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQA 43 (256)
T ss_dssp CCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 5889 9999999753 999999999999 9998877765
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.99 E-value=0.42 Score=39.69 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=68.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||-|-|. |.+|.-+++.+++. |-+|+.|..++..-. .-.|+.+ ..+.+||++ ++|.=++-+||
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 68999997 99999999999999 989887876532110 0135554 567888876 79999999999
Q ss_pred hHHHH-HHHHHHhcCCCCcEEEEeccchhhh
Q 013877 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (434)
Q Consensus 189 ~a~~~-vl~eI~~~Lk~g~iL~~s~G~~i~~ 218 (434)
....+ +++.+...++ .++++.-|+.++.
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~D 111 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQD 111 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHHH
Confidence 88874 6666766664 3667888876543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.98 E-value=0.1 Score=46.51 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.4
Q ss_pred CC-EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 111 IN-QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 111 ~k-kIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|| +|.|||.|.-|.++|..|++. |++|.|..+.
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~ 34 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQ 34 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH------TCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 44 799999999999999999999 9998887665
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.98 E-value=0.82 Score=40.08 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~---mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.|+| |+|-|.|.++ +|.++|+.|.+. |.+|++..++
T Consensus 2 ~L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~ 40 (258)
T d1qsga_ 2 FLSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQN 40 (258)
T ss_dssp TTTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4788 9999999865 889999999999 9999888776
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=89.87 E-value=0.61 Score=38.15 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=66.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||-|-|. |.+|.-+++.+++. |-+|+.|..++..-.. -.|+.+ ..+.+|+++ ++|.=++-+||
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~~---~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGTT---HLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTEE---ETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCcc---cCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999997 99999999999999 9898878765321111 245554 567888775 68999999998
Q ss_pred hHHHH-HHHHHHhcCCCCcEEEEeccchhh
Q 013877 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLG 217 (434)
Q Consensus 189 ~a~~~-vl~eI~~~Lk~g~iL~~s~G~~i~ 217 (434)
....+ +++.+...++ .++++.-|+..+
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~ 101 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTL 101 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHH
Confidence 88764 6666766554 366777787654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.17 Score=38.59 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=27.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
||+|||||.|-.|.-++..-+.- |+++++...
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp 32 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGL 32 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcC
Confidence 58999999999999999998887 999876554
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.75 E-value=0.14 Score=42.93 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=52.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEeecch
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLavpd~ 189 (434)
-||||||. |-.|.-+.+-|.+. .+ .+.+..-.+.++..+........ .......++...+.|++++++|+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~s~~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~~~ 74 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAGSS 74 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEECGGGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSCHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEecccccccccccccCCc-ccccccchhhhhhhhhhhhccCcc
Confidence 58999997 99999998877654 43 22221111111111110111100 000123345667899999999988
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecc
Q 013877 190 AQADNYEKIFSCMKPNSILGLSHG 213 (434)
Q Consensus 190 a~~~vl~eI~~~Lk~g~iL~~s~G 213 (434)
...+...+.. ..|..|++.++
T Consensus 75 ~s~~~~~~~~---~~~~~VIDlSs 95 (154)
T d2gz1a1 75 TSAKYAPYAV---KAGVVVVDNTS 95 (154)
T ss_dssp HHHHHHHHHH---HTTCEEEECSS
T ss_pred chhhHHhhhc---cccceehhcCh
Confidence 8777666543 46777877765
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.72 E-value=0.16 Score=42.57 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=44.8
Q ss_pred cCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecCC--chhHHHHHHcCccccCCCcCCHHhhhccCCEE
Q 013877 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (434)
Q Consensus 108 ~~g~kkIgIIG~G~---mG~A~A~nLrds~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiV 182 (434)
|+| .||+|||=++ ...|++..+..- |.++++...+. ..........|.... ...++.++++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeEE--EEeCHHHHhhcCCeE
Confidence 578 9999999654 799999988876 87654433321 112233333343210 146889999999998
Q ss_pred EEe
Q 013877 183 LLL 185 (434)
Q Consensus 183 iLa 185 (434)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.71 E-value=0.64 Score=41.67 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|+.++ .+.+.+. +. + ...++..+.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~~-~~----------~--~g~~~~~~~ 60 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMNREA-LEKAEAS-VR----------E--KGVEARSYV 60 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HH----------T--TTSCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HH----------h--cCCcEEEEE
Confidence 4889 9999999764 999999999999 9999887765332 3322211 11 1 012333322
Q ss_pred ---ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++.+.++++++......=.+|+..+|+
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeehhhhcc
Confidence 23445567777766554332366767775
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.71 E-value=0.27 Score=44.34 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=53.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++ .+.+.+. +. +. ...+..+.
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~~-~~----------~~--g~~~~~~~ 63 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRNQKE-LNDCLTQ-WR----------SK--GFKVEASV 63 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HH----------HT--TCEEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HH----------hc--CCCceEEE
Confidence 4788 999999977 4999999999999 9999887775332 2222211 11 00 11122221
Q ss_pred ---ecchHHHHHHHHHHhcCC-CCcEEEEeccc
Q 013877 186 ---ISDAAQADNYEKIFSCMK-PNSILGLSHGF 214 (434)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk-~g~iL~~s~G~ 214 (434)
+.++.+.++++++...+. +=.+|+..+|+
T Consensus 64 ~Dv~~~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 64 CDLSSRSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 234444567777766554 33467777775
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.18 Score=45.60 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=35.1
Q ss_pred ccccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 105 PDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
|+-|+| |++-|.|.++ +|.++|+.|.+. |.+|++..|+.++
T Consensus 9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~~~ 50 (269)
T d1xu9a_ 9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSKET 50 (269)
T ss_dssp GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 456999 9999999886 999999999999 9999888876443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.66 E-value=0.35 Score=43.17 Aligned_cols=87 Identities=21% Similarity=0.125 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.+-.. ..+ .+|+
T Consensus 1 dl~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~~l~~~~~~~~~~~---------~~~-~~Dv---- 59 (243)
T d1q7ba_ 1 NFEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSENGAQAISDYLGANG---------KGL-MLNV---- 59 (243)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGE---------EEE-ECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhCCCC---------cEE-EEEe----
Confidence 3788 888888965 6999999999999 9999877776433333333222110 000 1222
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.+....++++++.....+=.+|+..+|.
T Consensus 60 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 60 TDPASIESVLEKIRAEFGEVDILVNNAGI 88 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred cCHHHhhhhhhhhhcccCCcceehhhhhh
Confidence 23444567788776655332356666665
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.65 E-value=0.56 Score=41.82 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=53.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhH-HHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
-|+| |.+-|.|.+ -||.++|+.|.+. |.+|++.++...+.. +..++.|... . .-.+|+
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~g~~~---------~-~~~~Dv--- 61 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPAPEAEAAIRNLGRRV---------L-TVKCDV--- 61 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCHHHHHHHHHTTCCE---------E-EEECCT---
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCchHHHHHHHHHcCCcE---------E-EEEeeC---
Confidence 4789 999999976 5999999999999 999988877644322 2222222110 0 112332
Q ss_pred eecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.+.....+++++.....+=.+|+..+|+
T Consensus 62 -s~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 62 -SQPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33444456777766554333367777775
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.47 E-value=0.77 Score=40.97 Aligned_cols=89 Identities=17% Similarity=0.091 Sum_probs=53.0
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe-
Q 013877 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa- 185 (434)
|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|++.+..+...+. + .+. ...+++.+.
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~~-~----------~~~-~g~~~~~~~~ 62 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRAG-L----------AAQ-HGVKVLYDGA 62 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHHH-H----------HHH-HTSCEEEECC
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHH-H----------HHh-cCCcEEEEEC
Confidence 678 8777778664 999999999999 999988877644333332210 0 000 112233322
Q ss_pred --ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 --vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+.++.+.++++++.....+=.+|+..+|+.
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeecccc
Confidence 234444567777665543334677777763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.40 E-value=0.4 Score=40.06 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=60.7
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
+| .+|.|+| .|.+|...++-++.. |.+|++..+.. +..+.+++.|...- +....+..+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~~-~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeeccc-ccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 46 8999988 599999999988888 99888777654 44688888886421 11122343433 3579
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEe
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s 211 (434)
+|+-++..... ++....|+++..++..
T Consensus 97 ~v~d~~g~~~~----~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAGEAI----QRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCTHHH----HHHHHTEEEEEEEEEC
T ss_pred EEEecccchHH----HHHHHHhcCCCEEEEE
Confidence 99999986433 3344556666655543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.23 E-value=0.22 Score=48.84 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=52.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------chhHHHHH---Hc--C
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---AA--G 161 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~---~~--G 161 (434)
.|++ .||.|||+|.+|..++++|..+ |+ ++.+.+.. . .++...++ +. .
T Consensus 34 ~l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~ 106 (426)
T d1yovb1 34 LLDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 106 (426)
T ss_dssp HHHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred HHhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC
Confidence 4677 8999999999999999999988 76 44444321 0 01111111 11 1
Q ss_pred c--cccCCCc-CCHHhhhccCCEEEEeecchHHHHHHHHH
Q 013877 162 F--TEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKI 198 (434)
Q Consensus 162 ~--~~~~~~~-~~~~Ea~~~ADiViLavpd~a~~~vl~eI 198 (434)
+ ....... ....+.+++.|+|+.++-+......+.++
T Consensus 107 v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 107 CNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp CCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred CceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 1 1101111 12346789999999999887777777654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.16 E-value=0.5 Score=42.47 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=35.2
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh
Q 013877 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (434)
Q Consensus 105 ~~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s 153 (434)
+..|+| |++-|.| .+-+|.++|+.|.+. |.+|++..++.++.
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~ 55 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTES 55 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHH
Confidence 567999 9999999 568999999999999 99998877764443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.94 E-value=0.27 Score=44.55 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=52.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhccCCEEE
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+ .|.. ..++..
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~ 61 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSSERLEETRQIILKSGVS--------------EKQVNS 61 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTTTCC--------------GGGEEE
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------------CCceEE
Confidence 789 999999966 5999999999999 99998888764332222211 1111 112222
Q ss_pred Ee---ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 184 La---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+. +.+..+.++++++.....+=.+|+..+|.
T Consensus 62 ~~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 62 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 22 23444556777766554333467777775
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=0.48 Score=42.31 Aligned_cols=90 Identities=19% Similarity=0.076 Sum_probs=51.4
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhh-hccCCEEEEe
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea-~~~ADiViLa 185 (434)
++| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+..-. .....+ .-.+|+
T Consensus 1 i~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~~~~Dv---- 63 (254)
T d2gdza1 1 VNG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLEAGVQCKAALHEQ------FEPQKTLFIQCDV---- 63 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHTTT------SCGGGEEEEECCT----
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHh------cCCCcEEEEEeec----
Confidence 357 888888875 4999999999999 999988877644433333321111 001110 011232
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++.+.++++++...+.+=.+|+..+|.
T Consensus 64 ~~~~~v~~~~~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 64 ADQQQLRDTFRKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCcCeecccccc
Confidence 23444456777766544332366666665
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=88.81 E-value=0.58 Score=40.50 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=48.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchh--HH------HHHHcCccccCCCcCC---HHhhhccC
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FA------EARAAGFTEENGTLGD---IYETISGS 179 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s--~~------~A~~~G~~~~~~~~~~---~~Ea~~~A 179 (434)
|||.|+|. |.+|.+++..|.++ |++|++..|..... .. .....++....+...+ ..+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 78999995 99999999999999 99988777653321 11 1112333221111222 34677889
Q ss_pred CEEEEeecchHH
Q 013877 180 DLVLLLISDAAQ 191 (434)
Q Consensus 180 DiViLavpd~a~ 191 (434)
|.|+.+......
T Consensus 78 ~~vi~~~~~~~~ 89 (307)
T d1qyca_ 78 DVVISTVGSLQI 89 (307)
T ss_dssp SEEEECCCGGGS
T ss_pred eeeeeccccccc
Confidence 988888765544
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.44 Score=40.79 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=49.6
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecC----CchhH----HHHHHcCccccCCCcCCHHhh
Q 013877 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSF----AEARAAGFTEENGTLGDIYET 175 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G--~mG~A~A~nLrds~~~~~~G~~Vivg~r~----~~~s~----~~A~~~G~~~~~~~~~~~~Ea 175 (434)
+.|+| .||++||=| ++..|++..+..- |+++.+.-.+ +.... +.+...|... ....+.+++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence 45788 999999965 7999999988887 9887665432 11222 2333444331 114689999
Q ss_pred hccCCEEEEeec
Q 013877 176 ISGSDLVLLLIS 187 (434)
Q Consensus 176 ~~~ADiViLavp 187 (434)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999886543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.65 E-value=0.23 Score=40.07 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEec
Q 013877 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLR 148 (434)
Q Consensus 110 g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~--~Vivg~r 148 (434)
| |||.|||.|..|..+|..|++. +. +|++..+
T Consensus 2 g-krivIvGgG~~G~e~A~~l~~~------~~~~~Vtlie~ 35 (186)
T d1fcda1 2 G-RKVVVVGGGTGGATAAKYIKLA------DPSIEVTLIEP 35 (186)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHH------CTTSEEEEECS
T ss_pred C-CcEEEECccHHHHHHHHHHHHc------CCCCcEEEEEC
Confidence 6 9999999999999999999987 54 6666544
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=88.53 E-value=0.19 Score=44.05 Aligned_cols=30 Identities=27% Similarity=0.110 Sum_probs=27.6
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 114 IgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|.|||.|.+|.+.|..|.+. |.+|+|..+.
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESG 36 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCC
Confidence 99999999999999999999 9999887664
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.44 E-value=0.25 Score=44.36 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=54.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+. .+.. ..+++.+.
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l------------~~~~-g~~~~~~~ 61 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLEEASEAAQKL------------TEKY-GVETMAFR 61 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHHH-CCCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HHHh-CCcEEEEE
Confidence 4789 999999976 5999999999999 999988877644332222211 0100 12332222
Q ss_pred ---ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23344456777766554332367777775
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.27 E-value=0.82 Score=37.46 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=66.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhc--cCCEEEEeecc
Q 013877 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (434)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~--~ADiViLavpd 188 (434)
.||-|-|. |.+|.-+++.+++. |-+|+.|..++..-.. -.|+.+ ..+.+|+++ ++|.=++-+||
T Consensus 8 trVivQGiTG~~G~~ht~~m~~y------GT~iVaGVtPgkgG~~---~~giPV----f~tV~eAv~~~~~d~SvIfVPp 74 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGME---VLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTCE---ETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEeeeecCCCCcE---EECCch----HhhHHHHHHhcCCeEEEEeeCH
Confidence 68999997 99999999999999 9898888765321100 135544 567788765 68999999998
Q ss_pred hHHHH-HHHHHHhcCCCCcEEEEeccchhh
Q 013877 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLG 217 (434)
Q Consensus 189 ~a~~~-vl~eI~~~Lk~g~iL~~s~G~~i~ 217 (434)
....+ +++.+...++ .++++.-|+..+
T Consensus 75 ~~a~dAi~EAi~agI~--liv~ITEgVPv~ 102 (121)
T d1oi7a1 75 PAAADAALEAAHAGIP--LIVLITEGIPTL 102 (121)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCSCCCHH
T ss_pred HHHHHHHHHHHhCCCc--EEEEecCCCCHH
Confidence 88864 6666666553 366788887654
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.19 E-value=0.34 Score=40.26 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=49.8
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----chhHHHHHHcCccccCCCcCCHHhhhccCC
Q 013877 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (434)
Q Consensus 108 ~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~Ea~~~AD 180 (434)
|+| .||+|||= ++...|++..+..- |.++.+...++ +.....+.+.+.... ...+++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccce--eecCHHHhhccCc
Confidence 678 99999997 57899999998876 88877665432 222344444444321 1468899999999
Q ss_pred EEEEeec
Q 013877 181 LVLLLIS 187 (434)
Q Consensus 181 iViLavp 187 (434)
+|....-
T Consensus 73 vvy~~~~ 79 (157)
T d1ml4a2 73 VLYVTRI 79 (157)
T ss_dssp EEEECCC
T ss_pred EEEeecc
Confidence 9887654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.11 E-value=0.19 Score=41.11 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~ 149 (434)
.+|.|||.|.-|.+-|..|++. |+ +|.|..+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 4799999999999999999999 97 68776553
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=87.74 E-value=0.82 Score=40.80 Aligned_cols=85 Identities=19% Similarity=0.118 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.+ ..+.+++.+.. .+ .+|+
T Consensus 2 ~l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~-~~~~~~~~~~~-----------~~-~~Dv---- 57 (248)
T d2d1ya1 2 LFAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE-GKEVAEAIGGA-----------FF-QVDL---- 57 (248)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT-HHHHHHHHTCE-----------EE-ECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCe-----------EE-EEeC----
Confidence 4789 99999994 47999999999999 999988777643 33444333221 11 2343
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+.+..+.++++++...+.+=.+|+..+|+.
T Consensus 58 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 87 (248)
T d2d1ya1 58 EDERERVRFVEEAAYALGRVDVLVNNAAIA 87 (248)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEeCcCC
Confidence 334444567777665543323677777763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.70 E-value=0.93 Score=40.33 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=48.8
Q ss_pred CEEEEE-ccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe---e
Q 013877 112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL---I 186 (434)
Q Consensus 112 kkIgII-G~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa---v 186 (434)
|||++| |.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+ +. +. ..+++.+. +
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~--i~----------~~--g~~~~~~~~Dv~ 60 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYNDATAKAVASE--IN----------QA--GGHAVAVKVDVS 60 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH--HH----------HT--TCCEEEEECCTT
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH--HH----------hc--CCcEEEEEeeCC
Confidence 678766 655 5999999999999 99998887754332222211 11 10 11222222 2
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
.++.+.++++++...+.+=.+|+..+|+.
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~ 89 (255)
T d1gega_ 61 DRDQVFAAVEQARKTLGGFDVIVNNAGVA 89 (255)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeccccc
Confidence 33444567777766554333677777763
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.64 E-value=0.32 Score=43.98 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=34.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 106 ~~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
..|+| |++-|.| .|-+|.++|+.|.+. |.+|++..|+..+
T Consensus 21 ~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~~ 61 (294)
T d1w6ua_ 21 NSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMDV 61 (294)
T ss_dssp TTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 58999 9988888 568999999999999 9999888876443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.58 E-value=0.26 Score=41.99 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
+||.|||.|.=|.+-|..|.+. |++|.|...
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa 36 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEA 36 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeC
Confidence 7899999999999999999999 999987654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=87.56 E-value=0.22 Score=41.87 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=45.7
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 108 ~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
|+| .||++||= +++..|++..+..- |.++.+..... ... .+..+.. ..+++|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~---~~~-~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE---WQD-EENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch---hhc-cccceeE----EEechhccccCceeee
Confidence 678 99999995 57999999999887 88876544321 111 1123332 4678899999999887
Q ss_pred eec
Q 013877 185 LIS 187 (434)
Q Consensus 185 avp 187 (434)
..-
T Consensus 66 ~r~ 68 (151)
T d2at2a2 66 LRI 68 (151)
T ss_pred eEE
Confidence 543
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=87.40 E-value=0.59 Score=42.51 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=55.5
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhcc
Q 013877 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 99 ~~f~~~~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
+.|.......+| +||++||+ + .....+++. |.++.|..++. + .|..+ ....++++.+
T Consensus 111 d~~~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p-~-------~gd~p----~~~~~~lLp~ 167 (251)
T d2h1qa1 111 DPFIMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSP-E-------EGDYP----LPASEFILPE 167 (251)
T ss_dssp CHHHHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSC-C-------TTCEE----GGGHHHHGGG
T ss_pred cchhhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCC-C-------CCCCC----chHHHHhhhc
Confidence 446666677788 99999986 5 456668887 88888877753 1 23332 2356789999
Q ss_pred CCEEEEeecchHHHHHHHHHHhcCCCCcEE
Q 013877 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (434)
Q Consensus 179 ADiViLavpd~a~~~vl~eI~~~Lk~g~iL 208 (434)
||+||+.- -..+-..++.|..+-++...+
T Consensus 168 aD~viiTG-sTlvN~Tl~~LL~~~~~a~~v 196 (251)
T d2h1qa1 168 CDYVYITC-ASVVDKTLPRLLELSRNARRI 196 (251)
T ss_dssp CSEEEEET-HHHHHTCHHHHHHHTTTSSEE
T ss_pred CCEEEEEe-chhhcCCHHHHHHhCCcCCEE
Confidence 99988653 233334555666555554433
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.37 E-value=0.35 Score=43.81 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=31.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.+
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~ 39 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNED 39 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 788 999999976 5999999999999 999988877543
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.33 E-value=0.76 Score=41.46 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=27.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKV 145 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Viv 145 (434)
+.++| ++|+|-|+|++|..+|+.|. +. |..|+.
T Consensus 28 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~ 61 (239)
T d1gtma1 28 DTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVA 61 (239)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceee
Confidence 56899 99999999999999999885 45 766543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.32 E-value=0.059 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDS 133 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (434)
+||+|||.|.+|.+.|..|.++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 5899999999999999999998
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.16 E-value=0.4 Score=42.71 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=32.9
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchh
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s 153 (434)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++.
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l 42 (242)
T d1cyda_ 3 FSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDL 42 (242)
T ss_dssp CTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHH
Confidence 789 999999976 5999999999999 99998887764443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=0.83 Score=40.84 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-|+| |++-|-|. +-||.++|+.|.+. |.+|++..|+.++..+.+.+.+ . . ..-.+|+
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~-~-----~-----~~~~~Dv---- 60 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDESGGRALEQELP-G-----A-----VFILCDV---- 60 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCT-T-----E-----EEEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhcC-C-----C-----eEEEccC----
Confidence 5789 99999996 47999999999999 9999887775333222222211 0 0 0011232
Q ss_pred ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++.+.++++++.....+=.+|+..+|.
T Consensus 61 s~~~~v~~~~~~~~~~~g~iDilVnnAG~ 89 (250)
T d1ydea1 61 TQEDDVKTLVSETIRRFGRLDCVVNNAGH 89 (250)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 23344456777766554333367777775
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=86.91 E-value=0.53 Score=42.59 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=51.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEee
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLav 186 (434)
|+| |++-|-|. +-||.++|+.|.+. |.+|++..|+.++..+...+.|- ++..+..=+
T Consensus 3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~l~~~~~~~~~---------------~~~~~~~Dv 60 (276)
T d1bdba_ 3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSAERLAELETDHGD---------------NVLGIVGDV 60 (276)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHGG---------------GEEEEECCT
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCC---------------CeeEEeccc
Confidence 688 99999996 48999999999999 99998887764333222222221 111222222
Q ss_pred c-chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 187 S-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 187 p-d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
. ++...++++++.....+=.+|+..+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~g~idilvnnAG~ 89 (276)
T d1bdba_ 61 RSLEDQKQAASRCVARFGKIDTLIPNAGI 89 (276)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCcccccccccc
Confidence 3 333446666665554343466766775
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=86.88 E-value=0.57 Score=38.36 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcC----ccc---------------cC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE---------------EN 166 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~---------------~~ 166 (434)
...+| .+|-.||||.-- .+..|.+. |++| +|.+.++...+.|++.. ... ..
T Consensus 17 ~~~~~-~rvLd~GCG~G~--~a~~la~~------G~~V-~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 17 NVVPG-ARVLVPLCGKSQ--DMSWLSGQ------GYHV-VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp CCCTT-CEEEETTTCCSH--HHHHHHHH------CCEE-EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred CCCCC-CEEEEecCcCCH--HHHHHHHc------CCce-EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 44567 899999999854 55577777 9987 57777777777776521 100 00
Q ss_pred CCcCCH-HhhhccCCEEEE-----eecchHHHHHHHHHHhcCCCCcEEE
Q 013877 167 GTLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 167 ~~~~~~-~Ea~~~ADiViL-----avpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+...+. .+.....|+|+. ++++.....+++.+...||||..+.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 001111 122234566654 3455556678888999999998654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.70 E-value=0.42 Score=38.24 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~ 62 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA------GVHVSLVETQ 62 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence 8999999999999999999999 9998887654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.66 E-value=0.41 Score=37.63 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 54 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGA 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEec
Confidence 7899999999999999999998 9998887765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.58 E-value=0.44 Score=38.09 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=30.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 29 ~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 35 8999999999999999999999 9998877654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=86.47 E-value=0.43 Score=37.43 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=30.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
...+ ++|.|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 19 ~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 19 YEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp SCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 3456 9999999999999999999988 8888777654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.38 Score=38.00 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|..|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 53 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMF 53 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeec
Confidence 7899999999999999999998 9998887764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.80 E-value=0.98 Score=40.56 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=53.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEE
Q 013877 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (434)
Q Consensus 106 ~~~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViL 184 (434)
+.|+| |++-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+...+. +.+. ..+++.+
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~~~~~~~~~-----------~~~~--g~~~~~~ 62 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKEDEANSVLEE-----------IKKV--GGEAIAV 62 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHHH-----------HHHT--TCEEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHH-----------HHhc--CCcEEEE
Confidence 45899 98888885 47999999999999 999988887644322222110 0000 1122222
Q ss_pred e---ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 185 L---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 185 a---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
. +.++.+.++++++...+.+=.+|+..+|+
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCCEeecccee
Confidence 1 33444456777766554333467777775
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.79 E-value=1.1 Score=40.11 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=28.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVG 146 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLr-ds~~~~~~G~~Vivg 146 (434)
..++| ++|+|=|+|++|...|+.|. +. |..|+..
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~v 61 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAV 61 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEe
Confidence 45788 99999999999999999994 56 7766543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.60 E-value=0.41 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
.++|.|||.|.+|--+|..|... |.+|.+..+.
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CCEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 38999999999999999999988 9998887764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=85.51 E-value=0.98 Score=40.85 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=65.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH----cCccccCCCcCCHHhhh--ccCC
Q 013877 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI--SGSD 180 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~Ea~--~~AD 180 (434)
..+| ++|.=||||.-..++ .+.+. |.+| ++.+.++...+.|++ .|+.. .-...+..+.. ...|
T Consensus 118 ~~~g-~~VLDiGcGsG~l~i--~aa~~------g~~V-~gvDis~~av~~A~~na~~n~~~~-~~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 118 LRPG-DKVLDLGTGSGVLAI--AAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPFGPFD 186 (254)
T ss_dssp CCTT-CEEEEETCTTSHHHH--HHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGGGCCEE
T ss_pred cCcc-CEEEEcccchhHHHH--HHHhc------CCEE-EEEECChHHHHHHHHHHHHcCCce-eEEeccccccccccccc
Confidence 3567 899999999855444 45555 7776 588877766666653 45432 00124555544 4579
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+|+.........++++++...||||-.|+++ |+
T Consensus 187 ~V~ani~~~~l~~l~~~~~~~LkpGG~lilS-gi 219 (254)
T d2nxca1 187 LLVANLYAELHAALAPRYREALVPGGRALLT-GI 219 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE-EE
T ss_pred hhhhccccccHHHHHHHHHHhcCCCcEEEEE-ec
Confidence 9988777777788888999999999877653 44
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.49 E-value=0.26 Score=43.64 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 108 ~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
||| |++-|.|.+ -||.++|+.|.+. |.+|++..|+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~ 37 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARN 37 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECC
Confidence 688 999999975 5999999999999 9999887765
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=85.45 E-value=0.92 Score=38.76 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-c-CCchhHHHHHHcCccccCC-CcCCHHhhhccCCEEEEeec
Q 013877 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEARAAGFTEENG-TLGDIYETISGSDLVLLLIS 187 (434)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~-r-~~~~s~~~A~~~G~~~~~~-~~~~~~Ea~~~ADiViLavp 187 (434)
.|||||| .|..|.-+.+-|.+. . .+++.... + ...+........-....+- .....++..+++|+||+++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-C----CceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5899999 688888888877654 1 23543222 2 2222232222111110000 01223456688999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
...-.++...+ ...+.++.+.+++-
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADFR 105 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTTT
T ss_pred cchHHHHHHHH---HhcCcccccchhhh
Confidence 98887766433 34455566666653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.24 E-value=0.48 Score=42.31 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=34.4
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHH
Q 013877 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA 155 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~ 155 (434)
+-|+| |++-|.|.+. +|.++|+.|.+. |++|++..+++.+..+
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~~ 45 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAAE 45 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHHH
Confidence 45889 9999998664 999999999999 9999887776554333
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.07 E-value=0.57 Score=41.67 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~ 43 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQAD 43 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 3789 999999966 6999999999999 9999887776443
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.02 E-value=0.44 Score=40.95 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
+||+|||.|.-|.+-|..|+++ +.|++|.+..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6999999999999999999876 236788877654
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.95 E-value=0.68 Score=38.87 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=43.4
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCc----hhH----HHHHHcCccccCCCcCCHHhhhcc
Q 013877 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETISG 178 (434)
Q Consensus 108 ~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~~~~~~~Ea~~~ 178 (434)
|+| +||++||-|+ +..|++..+..- |+++.+...... ... +.+.+.|.... ...++.+++++
T Consensus 2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~~ 72 (170)
T d1otha2 2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAHG 72 (170)
T ss_dssp CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHTT
T ss_pred CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHhh
Confidence 688 9999999874 334444444443 887766543311 112 22333443211 15689999999
Q ss_pred CCEEEEeec
Q 013877 179 SDLVLLLIS 187 (434)
Q Consensus 179 ADiViLavp 187 (434)
+|+|+..+-
T Consensus 73 advi~~~~~ 81 (170)
T d1otha2 73 GNVLITDTW 81 (170)
T ss_dssp CSEEEECCS
T ss_pred hhheeeece
Confidence 999998654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.62 E-value=1 Score=40.01 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.+. ..++..+.
T Consensus 3 rL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~ 60 (251)
T d1zk4a1 3 RLDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHSDVGEKAAKSVGT---------------PDQIQFFQ 60 (251)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCC---------------CCcEEEEE
Confidence 3789 998888955 5999999999999 99998887764332222222110 11222222
Q ss_pred --ec-chHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 --IS-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 --vp-d~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+. ++.+.++++++...+.+=.+|+..+|.
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCceEEEecccc
Confidence 23 344456777766554332367767765
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=84.37 E-value=0.64 Score=42.55 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=45.3
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHH--H--c--Cc---cccC-CCcCCHHhhhcc
Q 013877 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A--A--GF---TEEN-GTLGDIYETISG 178 (434)
Q Consensus 110 g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~--~--~--G~---~~~~-~~~~~~~Ea~~~ 178 (434)
| |+|.|.| .|.+|..+++.|.+. |++|+...|+.++...... . . .. ...| ....+..+++.+
T Consensus 11 g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 83 (342)
T d1y1pa1 11 G-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp T-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTT
T ss_pred c-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhccc
Confidence 6 9999999 688999999999999 9998766765332211110 0 0 00 1000 001235578899
Q ss_pred CCEEEEeecc
Q 013877 179 SDLVLLLISD 188 (434)
Q Consensus 179 ADiViLavpd 188 (434)
+|.|+.+.-.
T Consensus 84 ~~~v~~~a~~ 93 (342)
T d1y1pa1 84 AAGVAHIASV 93 (342)
T ss_dssp CSEEEECCCC
T ss_pred chhhhhhccc
Confidence 9998865443
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.37 E-value=0.66 Score=40.34 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
..-.+ ++|.|||.|.-|.+.|..|++. |++|++..+.
T Consensus 45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~ 81 (233)
T d1djqa3 45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA 81 (233)
T ss_dssp CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence 34455 9999999999999999999999 9999887654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.30 E-value=0.54 Score=37.56 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeec
Confidence 7899999999999999999998 9999887764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.11 E-value=0.59 Score=37.86 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~ 67 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA 67 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence 8999999999999999999999 9998877654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.72 E-value=0.58 Score=40.17 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~ 149 (434)
.+|.|||.|.-|.+.|..|++. |+ +|.|..+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence 4899999999999999999999 96 88777664
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=83.68 E-value=0.68 Score=36.68 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|.+|.=+|..|++. |.+|.+..+.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~ 54 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAM 54 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEee
Confidence 7899999999999999999998 9998887764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.44 E-value=0.62 Score=37.15 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
+++.|||.|.+|.-+|..|.+. |.+|.+..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence 7899999999999999999998 9998877654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=83.11 E-value=0.6 Score=42.33 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=32.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 107 ~~~g~kkIgIIG-~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
.++| |||-|.| .|-+|..+++.|.+. |++|++..|..+
T Consensus 5 ~~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 5 FWQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAP 43 (356)
T ss_dssp HHTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCS
T ss_pred hhCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCC
Confidence 4788 9999999 889999999999999 999887766543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=83.07 E-value=0.75 Score=41.94 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=29.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg 146 (434)
..++| +||+|=|+|++|...|+.|.+. |.+|+..
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvav 65 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTL 65 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE
Confidence 46889 9999999999999999999998 9876543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=82.98 E-value=0.73 Score=41.22 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=31.7
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCch
Q 013877 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (434)
Q Consensus 108 ~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~ 152 (434)
|+| |+|-|.|... +|.++|+.|.+. |.+|++..|..++
T Consensus 3 l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~ 41 (254)
T d1sbya1 3 LTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN 41 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred CCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence 789 9999999874 999999999999 9887776665444
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.89 E-value=0.67 Score=36.76 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8999999999999999999998 9998876654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.63 E-value=1.5 Score=39.03 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCccccCCCcCCHHhhhccCCEEEEe
Q 013877 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (434)
Q Consensus 107 ~~~g~kkIgIIG~G-~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~ADiViLa 185 (434)
.|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++ .+.+.+ .+.+. ..+++.+.
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-~~~~~~-----------~l~~~--g~~~~~~~ 66 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDINADA-ANHVVD-----------EIQQL--GGQAFACR 66 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESCHHH-HHHHHH-----------HHHHT--TCCEEEEE
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHHc--CCcEEEEE
Confidence 3788 888888865 6999999999999 9999887765332 222211 01110 11233222
Q ss_pred ---ecchHHHHHHHHHHhcCCCCcEEEEeccc
Q 013877 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (434)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~ 214 (434)
+.++...++++++...+.+=.+|+..+|+
T Consensus 67 ~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 67 CDITSEQELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 22344456777766555333467777775
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.48 E-value=0.44 Score=43.44 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 111 ~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
|..|.|||.|.-|.+.|..|.+. |++|.|...+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKR 33 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECC
Confidence 56799999999999999999988 9998887654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=0.36 Score=42.80 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEE
Q 013877 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG 146 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg 146 (434)
+.|++ .||.|||+|-.|..++.+|... |+ ++.+.
T Consensus 26 ~kL~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lv 60 (247)
T d1jw9b_ 26 EALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLL 60 (247)
T ss_dssp HHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEE
T ss_pred HHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEE
Confidence 56888 9999999999999999999999 87 44444
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.44 E-value=0.72 Score=36.10 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 7899999999999999999998 9998776554
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.39 E-value=1.4 Score=36.38 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred CCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCcccc-CCCcCCHHhhh------ccCC
Q 013877 109 NGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (434)
Q Consensus 109 ~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~Ea~------~~AD 180 (434)
.| ++|.|+|.|. +|....+-.+.. |.+|++..++ ++..+.+++.|.... |-...+..+.+ ...|
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s-~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccc-hHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 46 8999996665 887777777777 9888776665 444678888885421 11123444433 2358
Q ss_pred EEEEeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 181 iViLavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
+|+-++...... .....++++-.++
T Consensus 100 ~v~d~~g~~~~~----~~~~~l~~~G~~v 124 (179)
T d1qora2 100 VVYDSVGRDTWE----RSLDCLQRRGLMV 124 (179)
T ss_dssp EEEECSCGGGHH----HHHHTEEEEEEEE
T ss_pred EEEeCccHHHHH----HHHHHHhcCCeee
Confidence 888888765433 3444555554443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.15 E-value=0.62 Score=41.86 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=32.2
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 013877 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (434)
Q Consensus 107 ~~~g~kkIgIIG~G~-mG~A~A~nLrds~~~~~~G~~Vivg~r~~~ 151 (434)
.||| |++-|.|.+. ||.++|+.|.+. |.+|++..|+..
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~~ 43 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNEY 43 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 4789 9999999774 999999999999 999888777533
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.80 E-value=0.45 Score=41.52 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHcCc-cc----------------c----CC
Q 013877 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TE----------------E----NG 167 (434)
Q Consensus 109 ~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~----------------~----~~ 167 (434)
+| .+|-.+|||.- ..+..|.+. |++| +|.+.++...+.|++..- .. . +-
T Consensus 45 ~~-~rvLd~GCG~G--~~a~~LA~~------G~~V-~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 114 (229)
T d2bzga1 45 SG-LRVFFPLCGKA--VEMKWFADR------GHSV-VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL 114 (229)
T ss_dssp CS-CEEEETTCTTC--THHHHHHHT------TCEE-EEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred CC-CEEEEeCCCCc--HHHHHHHhC------CCcE-EEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence 55 79999999993 557778888 9987 688877766666654211 00 0 00
Q ss_pred CcCCHHhh----hccCCEEE-----EeecchHHHHHHHHHHhcCCCCcEEE
Q 013877 168 TLGDIYET----ISGSDLVL-----LLISDAAQADNYEKIFSCMKPNSILG 209 (434)
Q Consensus 168 ~~~~~~Ea----~~~ADiVi-----Lavpd~a~~~vl~eI~~~Lk~g~iL~ 209 (434)
.+.|..+. ....|+|+ .++++......++++...||||..+.
T Consensus 115 ~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 115 YCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp EESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence 01222222 12345555 34667777788889999999998654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.76 E-value=1.4 Score=44.03 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEE
Q 013877 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG 146 (434)
Q Consensus 105 ~~~~~g~kkIgIIG~G~mG~A~A~nLrds~~~~~~G~-~Vivg 146 (434)
...|+. .+|.|||+|..|.-+++||.-+ |+ .+.+.
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itiv 55 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTII 55 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEE
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEE
Confidence 356777 9999999999999999999988 87 55554
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=81.13 E-value=1.3 Score=36.68 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=45.2
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecC----CchhHHHHHHcCccccCCCcCCHHhhhccC
Q 013877 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (434)
Q Consensus 108 ~~g~kkIgIIG~---G~mG~A~A~nLrds~~~~~~G~-~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~Ea~~~A 179 (434)
|+| .||++||= ++...|++..+..- |. .+.+.-.. +....+.+...|.... ...++.++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhccccc--cccCHHHHhCcC
Confidence 578 99999996 45899998888765 64 33343221 1222355556665421 146788999999
Q ss_pred CEEEEe
Q 013877 180 DLVLLL 185 (434)
Q Consensus 180 DiViLa 185 (434)
|+|...
T Consensus 73 Dvvy~~ 78 (160)
T d1ekxa2 73 DILYMT 78 (160)
T ss_dssp SEEEEC
T ss_pred ceEEee
Confidence 998854
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.99 E-value=0.67 Score=36.99 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=27.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r 148 (434)
++|.|||.|.+|.-+|..|++. |.+|.+..+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~ 51 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVR 51 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEES
T ss_pred CeEEEECCCccHHHHHHHHhhc------CCeEEEEEe
Confidence 6899999999999999999998 988877665
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.98 E-value=0.93 Score=40.49 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=51.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHH---cCccccCCCcCCHHhhhccCCEEE
Q 013877 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVL 183 (434)
Q Consensus 108 ~~g~kkIgIIG~-G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~Ea~~~ADiVi 183 (434)
|+| |.+-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+.+.+ .|.. ..++..
T Consensus 3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~ 61 (264)
T d1spxa_ 3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHAERLEETRQQILAAGVS--------------EQNVNS 61 (264)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------------GGGEEE
T ss_pred CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------------cCceEE
Confidence 788 77777775 57999999999999 99998887764332222221 1111 112222
Q ss_pred Ee---ecchHHHHHHHHHHhcCCCCcEEEEeccch
Q 013877 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (434)
Q Consensus 184 La---vpd~a~~~vl~eI~~~Lk~g~iL~~s~G~~ 215 (434)
+. +.+....++++++.....+=.+|+..+|..
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG~~ 96 (264)
T d1spxa_ 62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAA 96 (264)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC--
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEeecccccc
Confidence 22 234444567777665544434778777763
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=80.79 E-value=0.81 Score=40.86 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=32.5
Q ss_pred cccCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 013877 106 DAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (434)
Q Consensus 106 ~~~~g~kkIgIIG~G~---mG~A~A~nLrds~~~~~~G~~Vivg~r~ 149 (434)
-.|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|.
T Consensus 4 ~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 4 IDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 45899 9999999864 999999999999 9999887765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.33 E-value=1.2 Score=38.45 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCchhHHHHHHc----CccccCCCcCCHHhh--hccCCEEEEe
Q 013877 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYET--ISGSDLVLLL 185 (434)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~Ea--~~~ADiViLa 185 (434)
++|.=||||.- .++..|.+. |.+| +|.+.++...+.|++. +... .-...+.++. -..-|+|+++
T Consensus 43 ~~iLDiGcGtG--~~~~~l~~~------~~~v-~gvD~s~~mi~~a~~~~~~~~~~i-~~~~~d~~~l~~~~~fD~I~~~ 112 (251)
T d1wzna1 43 RRVLDLACGTG--IPTLELAER------GYEV-VGLDLHEEMLRVARRKAKERNLKI-EFLQGDVLEIAFKNEFDAVTMF 112 (251)
T ss_dssp CEEEEETCTTC--HHHHHHHHT------TCEE-EEEESCHHHHHHHHHHHHHTTCCC-EEEESCGGGCCCCSCEEEEEEC
T ss_pred CEEEEeCCCCC--ccchhhccc------ceEE-EEEeeccccccccccccccccccc-hheehhhhhcccccccchHhhh
Confidence 78999999983 445567777 8875 5777766666666543 3211 0002333332 1346888765
Q ss_pred ------ecchHHHHHHHHHHhcCCCCcEEEE
Q 013877 186 ------ISDAAQADNYEKIFSCMKPNSILGL 210 (434)
Q Consensus 186 ------vpd~a~~~vl~eI~~~Lk~g~iL~~ 210 (434)
+.+.....+++++...||||-++++
T Consensus 113 ~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 2233445788899999999987653
|